Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02124.t1 | XP_012569675.2 | 40.4 | 891 | 232 | 11 | 1 | 878 | 1 | 605 | 1.20E-154 | 557.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02124.t1 | Q9FX31 | 35.1 | 507 | 283 | 10 | 32 | 528 | 43 | 513 | 2.7e-70 | 268.5 |
MS.gene02124.t1 | Q9FX31 | 38.1 | 97 | 60 | 0 | 781 | 877 | 548 | 644 | 5.8e-12 | 74.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02124.t1 | A0A1S3E1Q6 | 40.4 | 891 | 232 | 11 | 1 | 878 | 1 | 605 | 8.9e-155 | 557.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene02124.t1 | TF | HB-HD-ZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02124.t1 | MTR_2g030660 | 45.213 | 564 | 219 | 13 | 8 | 557 | 3 | 490 | 7.30e-136 | 421 |
MS.gene02124.t1 | MTR_2g030660 | 63.636 | 99 | 35 | 1 | 781 | 878 | 492 | 590 | 1.91e-32 | 135 |
MS.gene02124.t1 | MTR_2g030600 | 37.405 | 524 | 273 | 13 | 1 | 514 | 1 | 479 | 2.04e-97 | 320 |
MS.gene02124.t1 | MTR_2g030600 | 39.394 | 99 | 59 | 1 | 781 | 879 | 531 | 628 | 3.67e-15 | 80.5 |
MS.gene02124.t1 | MTR_2g030570 | 37.977 | 524 | 272 | 13 | 1 | 514 | 1 | 481 | 1.28e-95 | 316 |
MS.gene02124.t1 | MTR_2g030570 | 42.000 | 100 | 57 | 1 | 779 | 878 | 531 | 629 | 1.64e-16 | 84.7 |
MS.gene02124.t1 | MTR_6g477820 | 36.800 | 500 | 274 | 12 | 22 | 513 | 30 | 495 | 3.64e-93 | 310 |
MS.gene02124.t1 | MTR_4g047800 | 34.791 | 526 | 282 | 16 | 1 | 513 | 34 | 511 | 5.45e-80 | 274 |
MS.gene02124.t1 | MTR_7g427710 | 38.422 | 393 | 200 | 11 | 132 | 510 | 64 | 428 | 2.55e-71 | 248 |
MS.gene02124.t1 | MTR_7g427710 | 42.975 | 121 | 54 | 2 | 22 | 140 | 17 | 124 | 7.90e-23 | 104 |
MS.gene02124.t1 | MTR_2g088470 | 34.211 | 418 | 226 | 9 | 132 | 513 | 115 | 519 | 6.26e-64 | 229 |
MS.gene02124.t1 | MTR_2g088470 | 35.669 | 157 | 91 | 3 | 1 | 149 | 41 | 195 | 1.21e-21 | 101 |
MS.gene02124.t1 | MTR_2g101720 | 30.181 | 497 | 273 | 12 | 26 | 513 | 144 | 575 | 6.15e-63 | 228 |
MS.gene02124.t1 | MTR_5g029320 | 33.645 | 428 | 217 | 16 | 132 | 508 | 137 | 548 | 4.27e-59 | 217 |
MS.gene02124.t1 | MTR_5g029320 | 42.000 | 150 | 76 | 4 | 1 | 140 | 61 | 209 | 5.41e-22 | 102 |
MS.gene02124.t1 | MTR_8g432540 | 31.198 | 484 | 259 | 14 | 132 | 558 | 163 | 629 | 1.19e-58 | 216 |
MS.gene02124.t1 | MTR_8g432540 | 38.235 | 136 | 80 | 2 | 7 | 140 | 101 | 234 | 8.98e-19 | 92.0 |
MS.gene02124.t1 | MTR_8g432540 | 41.414 | 99 | 57 | 1 | 781 | 878 | 638 | 736 | 9.90e-15 | 79.0 |
MS.gene02124.t1 | MTR_7g427690 | 41.844 | 282 | 142 | 7 | 238 | 510 | 57 | 325 | 1.73e-58 | 207 |
MS.gene02124.t1 | MTR_7g076080 | 31.702 | 429 | 229 | 13 | 132 | 509 | 139 | 554 | 9.78e-58 | 213 |
MS.gene02124.t1 | MTR_7g076080 | 37.500 | 136 | 81 | 2 | 7 | 140 | 77 | 210 | 2.74e-18 | 90.5 |
MS.gene02124.t1 | MTR_7g076080 | 38.384 | 99 | 60 | 1 | 781 | 878 | 611 | 709 | 2.25e-13 | 74.7 |
MS.gene02124.t1 | MTR_0198s0030 | 28.831 | 496 | 304 | 12 | 27 | 508 | 61 | 521 | 1.09e-54 | 203 |
MS.gene02124.t1 | MTR_5g005600 | 29.012 | 486 | 292 | 10 | 32 | 508 | 56 | 497 | 4.46e-51 | 192 |
MS.gene02124.t1 | MTR_5g005600 | 38.621 | 145 | 83 | 2 | 740 | 878 | 510 | 654 | 4.05e-20 | 96.3 |
MS.gene02124.t1 | MTR_1g101280 | 27.664 | 441 | 253 | 8 | 124 | 509 | 96 | 525 | 3.01e-50 | 190 |
MS.gene02124.t1 | MTR_1g101280 | 42.975 | 121 | 65 | 2 | 22 | 140 | 57 | 175 | 1.10e-20 | 98.2 |
MS.gene02124.t1 | MTR_2g030690 | 63.636 | 99 | 35 | 1 | 781 | 878 | 122 | 220 | 1.69e-33 | 131 |
MS.gene02124.t1 | MTR_2g030690 | 46.154 | 78 | 40 | 1 | 447 | 522 | 1 | 78 | 1.38e-15 | 78.6 |
MS.gene02124.t1 | MTR_7g068350 | 44.792 | 192 | 85 | 5 | 594 | 779 | 9 | 185 | 7.75e-33 | 127 |
MS.gene02124.t1 | MTR_2g451350 | 48.485 | 132 | 67 | 1 | 251 | 381 | 2 | 133 | 2.23e-31 | 120 |
MS.gene02124.t1 | MTR_7g427700 | 34.483 | 232 | 127 | 6 | 132 | 354 | 64 | 279 | 1.23e-28 | 120 |
MS.gene02124.t1 | MTR_7g427700 | 42.975 | 121 | 54 | 2 | 22 | 140 | 17 | 124 | 2.49e-23 | 104 |
MS.gene02124.t1 | MTR_2g083350 | 31.834 | 289 | 157 | 8 | 237 | 521 | 72 | 324 | 6.19e-26 | 114 |
MS.gene02124.t1 | MTR_5g098775 | 41.209 | 182 | 71 | 5 | 602 | 779 | 26 | 175 | 4.67e-25 | 103 |
MS.gene02124.t1 | MTR_2g083330 | 33.040 | 227 | 132 | 6 | 296 | 518 | 105 | 315 | 2.54e-24 | 108 |
MS.gene02124.t1 | MTR_7g027605 | 53.333 | 90 | 39 | 2 | 326 | 413 | 3 | 91 | 9.78e-23 | 93.6 |
MS.gene02124.t1 | MTR_2g030700 | 41.270 | 126 | 65 | 3 | 14 | 139 | 11 | 127 | 6.80e-19 | 85.1 |
MS.gene02124.t1 | MTR_2g030680 | 40.800 | 125 | 65 | 3 | 15 | 139 | 12 | 127 | 2.63e-18 | 83.6 |
MS.gene02124.t1 | MTR_5g046040 | 38.583 | 127 | 76 | 1 | 22 | 146 | 33 | 159 | 2.04e-17 | 85.5 |
MS.gene02124.t1 | MTR_2g451350 | 45.977 | 87 | 36 | 1 | 295 | 381 | 19 | 94 | 3.28e-17 | 78.2 |
MS.gene02124.t1 | MTR_7g027265 | 36.585 | 123 | 74 | 2 | 23 | 143 | 19 | 139 | 6.90e-17 | 78.6 |
MS.gene02124.t1 | MTR_2g030720 | 42.063 | 126 | 61 | 4 | 14 | 139 | 11 | 124 | 1.57e-16 | 78.2 |
MS.gene02124.t1 | MTR_2g030710 | 46.000 | 100 | 34 | 3 | 780 | 878 | 137 | 217 | 5.66e-15 | 75.9 |
MS.gene02124.t1 | MTR_6g027290 | 33.548 | 155 | 97 | 4 | 7 | 158 | 10 | 161 | 3.01e-14 | 72.0 |
MS.gene02124.t1 | MTR_0653s0020 | 43.210 | 81 | 41 | 2 | 430 | 510 | 8 | 83 | 3.84e-13 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02124.t1 | AT1G73360 | 35.944 | 498 | 275 | 10 | 22 | 509 | 33 | 496 | 3.30e-89 | 299 |
MS.gene02124.t1 | AT1G73360 | 37.755 | 98 | 61 | 0 | 781 | 878 | 548 | 645 | 1.04e-13 | 75.9 |
MS.gene02124.t1 | AT3G03260 | 32.857 | 560 | 319 | 14 | 1 | 552 | 1 | 511 | 3.36e-87 | 288 |
MS.gene02124.t1 | AT1G17920 | 35.992 | 489 | 270 | 9 | 26 | 509 | 26 | 476 | 2.39e-86 | 290 |
MS.gene02124.t1 | AT1G17920 | 35.992 | 489 | 270 | 9 | 26 | 509 | 26 | 476 | 2.39e-86 | 290 |
MS.gene02124.t1 | AT3G03260 | 32.857 | 560 | 319 | 14 | 1 | 552 | 1 | 511 | 1.10e-85 | 289 |
MS.gene02124.t1 | AT4G21750 | 33.333 | 492 | 289 | 8 | 22 | 509 | 63 | 519 | 2.72e-77 | 268 |
MS.gene02124.t1 | AT4G21750 | 33.333 | 492 | 289 | 8 | 22 | 509 | 63 | 519 | 2.72e-77 | 268 |
MS.gene02124.t1 | AT4G21750 | 33.333 | 492 | 289 | 8 | 22 | 509 | 63 | 519 | 2.72e-77 | 268 |
MS.gene02124.t1 | AT4G21750 | 33.333 | 492 | 289 | 8 | 22 | 509 | 63 | 519 | 2.72e-77 | 268 |
MS.gene02124.t1 | AT4G04890 | 32.994 | 491 | 283 | 9 | 22 | 509 | 63 | 510 | 1.05e-73 | 257 |
MS.gene02124.t1 | AT4G04890 | 32.994 | 491 | 283 | 9 | 22 | 509 | 63 | 510 | 1.05e-73 | 257 |
MS.gene02124.t1 | AT1G05230 | 33.464 | 511 | 282 | 12 | 7 | 513 | 51 | 507 | 7.91e-73 | 254 |
MS.gene02124.t1 | AT1G05230 | 35.714 | 98 | 62 | 1 | 781 | 878 | 559 | 655 | 2.78e-12 | 71.2 |
MS.gene02124.t1 | AT1G05230 | 33.464 | 511 | 282 | 12 | 7 | 513 | 51 | 507 | 1.05e-72 | 254 |
MS.gene02124.t1 | AT1G05230 | 34.343 | 99 | 64 | 1 | 781 | 878 | 559 | 657 | 3.87e-11 | 67.4 |
MS.gene02124.t1 | AT1G05230 | 33.464 | 511 | 282 | 12 | 7 | 513 | 51 | 507 | 1.05e-72 | 254 |
MS.gene02124.t1 | AT1G05230 | 34.343 | 99 | 64 | 1 | 781 | 878 | 559 | 657 | 3.87e-11 | 67.4 |
MS.gene02124.t1 | AT1G05230 | 33.464 | 511 | 282 | 12 | 7 | 513 | 51 | 507 | 1.05e-72 | 254 |
MS.gene02124.t1 | AT1G05230 | 34.343 | 99 | 64 | 1 | 781 | 878 | 559 | 657 | 3.87e-11 | 67.4 |
MS.gene02124.t1 | AT1G05230 | 33.464 | 511 | 282 | 12 | 7 | 513 | 51 | 507 | 1.05e-72 | 254 |
MS.gene02124.t1 | AT1G05230 | 34.343 | 99 | 64 | 1 | 781 | 878 | 559 | 657 | 3.87e-11 | 67.4 |
MS.gene02124.t1 | AT1G05230 | 33.464 | 511 | 282 | 12 | 7 | 513 | 51 | 507 | 1.05e-72 | 254 |
MS.gene02124.t1 | AT1G05230 | 34.343 | 99 | 64 | 1 | 781 | 878 | 559 | 657 | 3.87e-11 | 67.4 |
MS.gene02124.t1 | AT1G05230 | 33.464 | 511 | 282 | 12 | 7 | 513 | 51 | 507 | 1.05e-72 | 254 |
MS.gene02124.t1 | AT1G05230 | 34.343 | 99 | 64 | 1 | 781 | 878 | 559 | 657 | 3.87e-11 | 67.4 |
MS.gene02124.t1 | AT1G05230 | 33.464 | 511 | 282 | 12 | 7 | 513 | 51 | 507 | 1.05e-72 | 254 |
MS.gene02124.t1 | AT1G05230 | 34.343 | 99 | 64 | 1 | 781 | 878 | 559 | 657 | 3.87e-11 | 67.4 |
MS.gene02124.t1 | AT1G05230 | 33.464 | 511 | 282 | 12 | 7 | 513 | 51 | 507 | 1.05e-72 | 254 |
MS.gene02124.t1 | AT1G05230 | 34.343 | 99 | 64 | 1 | 781 | 878 | 559 | 657 | 3.87e-11 | 67.4 |
MS.gene02124.t1 | AT1G05230 | 33.464 | 511 | 282 | 12 | 7 | 513 | 51 | 507 | 1.05e-72 | 254 |
MS.gene02124.t1 | AT1G05230 | 34.343 | 99 | 64 | 1 | 781 | 878 | 559 | 657 | 3.87e-11 | 67.4 |
MS.gene02124.t1 | AT1G05230 | 33.464 | 511 | 282 | 12 | 7 | 513 | 51 | 507 | 1.05e-72 | 254 |
MS.gene02124.t1 | AT1G05230 | 34.343 | 99 | 64 | 1 | 781 | 878 | 559 | 657 | 3.87e-11 | 67.4 |
MS.gene02124.t1 | AT1G05230 | 32.028 | 562 | 321 | 15 | 7 | 563 | 51 | 556 | 5.99e-72 | 249 |
MS.gene02124.t1 | AT3G61150 | 32.014 | 556 | 317 | 15 | 22 | 558 | 111 | 624 | 1.34e-71 | 253 |
MS.gene02124.t1 | AT3G61150 | 38.384 | 99 | 60 | 1 | 781 | 878 | 633 | 731 | 1.05e-13 | 75.9 |
MS.gene02124.t1 | AT1G34650 | 33.268 | 514 | 303 | 15 | 24 | 522 | 17 | 505 | 3.80e-69 | 244 |
MS.gene02124.t1 | AT1G34650 | 39.394 | 99 | 58 | 2 | 781 | 878 | 547 | 644 | 1.68e-13 | 75.1 |
MS.gene02124.t1 | AT2G32370 | 29.443 | 574 | 328 | 18 | 9 | 565 | 52 | 565 | 1.45e-61 | 223 |
MS.gene02124.t1 | AT5G46880 | 31.712 | 514 | 299 | 15 | 22 | 513 | 112 | 595 | 3.01e-61 | 223 |
MS.gene02124.t1 | AT5G46880 | 31.712 | 514 | 299 | 15 | 22 | 513 | 112 | 595 | 3.01e-61 | 223 |
MS.gene02124.t1 | AT5G46880 | 31.712 | 514 | 299 | 15 | 22 | 513 | 112 | 595 | 3.01e-61 | 223 |
MS.gene02124.t1 | AT5G17320 | 32.613 | 463 | 221 | 15 | 132 | 523 | 74 | 516 | 7.72e-60 | 218 |
MS.gene02124.t1 | AT1G79840 | 29.960 | 504 | 270 | 13 | 22 | 516 | 44 | 473 | 1.50e-56 | 207 |
MS.gene02124.t1 | AT1G79840 | 29.960 | 504 | 270 | 13 | 22 | 516 | 44 | 473 | 1.50e-56 | 207 |
MS.gene02124.t1 | AT1G79840 | 29.960 | 504 | 270 | 13 | 22 | 516 | 102 | 531 | 1.58e-56 | 208 |
MS.gene02124.t1 | AT4G00730 | 32.120 | 467 | 257 | 14 | 132 | 558 | 182 | 628 | 4.53e-56 | 208 |
MS.gene02124.t1 | AT4G00730 | 37.500 | 136 | 81 | 2 | 7 | 140 | 120 | 253 | 1.37e-18 | 91.7 |
MS.gene02124.t1 | AT4G00730 | 38.776 | 98 | 59 | 1 | 781 | 878 | 637 | 733 | 6.06e-12 | 70.1 |
MS.gene02124.t1 | AT1G79840 | 29.960 | 504 | 270 | 13 | 22 | 516 | 131 | 560 | 4.80e-56 | 207 |
MS.gene02124.t1 | AT1G79840 | 29.960 | 504 | 270 | 14 | 22 | 516 | 102 | 531 | 7.59e-56 | 204 |
MS.gene02124.t1 | AT4G17710 | 32.398 | 392 | 223 | 13 | 132 | 509 | 136 | 499 | 5.90e-52 | 194 |
MS.gene02124.t1 | AT4G17710 | 28.218 | 202 | 117 | 5 | 22 | 207 | 89 | 278 | 2.01e-14 | 78.2 |
MS.gene02124.t1 | AT4G00730 | 33.073 | 384 | 211 | 9 | 132 | 482 | 182 | 552 | 2.70e-51 | 190 |
MS.gene02124.t1 | AT4G00730 | 37.500 | 136 | 81 | 2 | 7 | 140 | 120 | 253 | 1.96e-18 | 90.5 |
MS.gene02124.t1 | AT1G79840 | 29.783 | 460 | 242 | 13 | 22 | 474 | 102 | 487 | 1.34e-50 | 187 |
MS.gene02124.t1 | AT5G52170 | 30.435 | 391 | 226 | 12 | 132 | 508 | 105 | 463 | 4.97e-43 | 167 |
MS.gene02124.t1 | AT5G52170 | 41.026 | 117 | 65 | 2 | 26 | 140 | 62 | 176 | 4.64e-20 | 96.3 |
MS.gene02124.t1 | AT5G52170 | 30.848 | 389 | 222 | 13 | 132 | 508 | 105 | 458 | 5.33e-43 | 167 |
MS.gene02124.t1 | AT5G52170 | 41.026 | 117 | 65 | 2 | 26 | 140 | 62 | 176 | 4.44e-20 | 96.3 |
MS.gene02124.t1 | AT5G52170 | 30.848 | 389 | 222 | 13 | 132 | 508 | 105 | 458 | 5.33e-43 | 167 |
MS.gene02124.t1 | AT5G52170 | 41.026 | 117 | 65 | 2 | 26 | 140 | 62 | 176 | 4.44e-20 | 96.3 |
MS.gene02124.t1 | AT4G25530 | 26.627 | 507 | 284 | 11 | 23 | 513 | 42 | 476 | 2.78e-40 | 159 |
MS.gene02124.t1 | AT4G26920 | 25.620 | 242 | 149 | 8 | 182 | 417 | 15 | 231 | 3.54e-13 | 73.2 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATGAAGGTTTACCATTAA+TGG | 0.136704 | 2.2:+57509566 | None:intergenic |
TCAGTGGTTACTTTACTTAA+AGG | 0.217161 | 2.2:-57512743 | MS.gene02124:intron |
AACCAAAACTTCACTTGATT+TGG | 0.218865 | 2.2:+57518039 | None:intergenic |
CAATTATATTTCAATTATTC+AGG | 0.226703 | 2.2:-57510326 | MS.gene02124:intron |
ATGGAGGGATCTGGTGGATA+TGG | 0.227965 | 2.2:+57512345 | None:intergenic |
TTAAAATCCGGTATATTTAA+AGG | 0.243162 | 2.2:+57509594 | None:intergenic |
TCCACTTGGATGTTTCCTTC+TGG | 0.250199 | 2.2:-57514053 | MS.gene02124:CDS |
TCTTCATGATTCTTACAATA+TGG | 0.264773 | 2.2:+57516792 | None:intergenic |
AGAGAGAGAGGGAGGCCTTC+TGG | 0.265251 | 2.2:+57512231 | None:intergenic |
TAAGAACCAATGATCCCTTA+TGG | 0.268122 | 2.2:-57515307 | MS.gene02124:CDS |
TGGAGCAGAAAGATTGCTTT+TGG | 0.273244 | 2.2:-57513398 | MS.gene02124:CDS |
AATATTCATTAGAAATTTGA+TGG | 0.280982 | 2.2:+57514021 | None:intergenic |
ATCCAAATCAAGTGAAGTTT+TGG | 0.286140 | 2.2:-57518041 | MS.gene02124:CDS |
TCAGTTGATCTTGTGCTTGT+AGG | 0.289865 | 2.2:-57511612 | MS.gene02124:CDS |
TGTTTCGGATGAAAATATTT+TGG | 0.290522 | 2.2:-57515417 | MS.gene02124:CDS |
TTCAGCCTTTAGTCAATCTT+TGG | 0.293101 | 2.2:-57511637 | MS.gene02124:CDS |
TTCTCTTCTCTTTGTTGTCA+TGG | 0.302101 | 2.2:-57511718 | MS.gene02124:CDS |
TCTTCAATTCCTCTTTCATT+TGG | 0.310977 | 2.2:+57516835 | None:intergenic |
TCTTCAATTCCTCTTTCATT+TGG | 0.310977 | 2.2:+57517775 | None:intergenic |
AGAAGATTCAACTCTTGTTT+TGG | 0.315969 | 2.2:+57515199 | None:intergenic |
AGAATGCTTCATAGATCCTT+TGG | 0.334562 | 2.2:-57509637 | MS.gene02124:CDS |
GTCGATCACACAATTGCATT+TGG | 0.340096 | 2.2:-57513418 | MS.gene02124:CDS |
TCACATCTTTGCTTGTCGTT+TGG | 0.348151 | 2.2:+57518087 | None:intergenic |
CTCTATACAGACAGTGTGTT+TGG | 0.351748 | 2.2:+57513446 | None:intergenic |
TACCTATCAAACAAGTAAAC+TGG | 0.352064 | 2.2:-57519345 | MS.gene02124:CDS |
TGAATTATCACCACACCGTT+TGG | 0.357501 | 2.2:+57509660 | None:intergenic |
GAATTATCACCACACCGTTT+GGG | 0.358303 | 2.2:+57509661 | None:intergenic |
GGAGAAAATTCCTGTTGTTT+CGG | 0.362562 | 2.2:-57515432 | MS.gene02124:CDS |
AAGTATAATCTTGCTATCTA+AGG | 0.371432 | 2.2:+57512631 | None:intergenic |
AAAATTTATTGCTACACATA+TGG | 0.374508 | 2.2:-57515453 | MS.gene02124:CDS |
CCGTTGAAATGATCAATAAT+AGG | 0.379183 | 2.2:+57515224 | None:intergenic |
GGTTCTTCAGAAAATCAAAA+TGG | 0.382926 | 2.2:-57514335 | MS.gene02124:CDS |
AAGAACCAATGATCCCTTAT+GGG | 0.382977 | 2.2:-57515306 | MS.gene02124:CDS |
CTTAACCCATAAGGGATCAT+TGG | 0.393215 | 2.2:+57515301 | None:intergenic |
GTTAAACAGTTATCCGCCTT+TGG | 0.397568 | 2.2:-57512173 | MS.gene02124:CDS |
TATCCAGTTACGGATCAAAA+TGG | 0.401865 | 2.2:+57511758 | None:intergenic |
TTCCAGTTTACTTGTTTGAT+AGG | 0.405010 | 2.2:+57519343 | None:intergenic |
CCTCCCATTGATGTTGTTGA+TGG | 0.412139 | 2.2:+57512326 | None:intergenic |
GTGATATAGCCACGGAGCTT+GGG | 0.423366 | 2.2:-57518068 | MS.gene02124:CDS |
AAAACCAGTTGTTGGGTAGA+TGG | 0.428997 | 2.2:+57512131 | None:intergenic |
AACATGCAGAAGAACAGAAA+TGG | 0.430765 | 2.2:-57515387 | MS.gene02124:CDS |
TAGATTTAAAGCAAGCCATT+TGG | 0.434363 | 2.2:-57515159 | MS.gene02124:CDS |
ATTTCTAATGAATATTCTAA+AGG | 0.436655 | 2.2:-57514014 | MS.gene02124:CDS |
TGGAGGGATCTGGTGGATAT+GGG | 0.438639 | 2.2:+57512346 | None:intergenic |
ACAATGTCACTTCTTTCCTC+TGG | 0.439586 | 2.2:-57509543 | MS.gene02124:CDS |
TCTCTCTCATCGAATGGTTA+AGG | 0.440789 | 2.2:-57512702 | MS.gene02124:CDS |
TAGAAGATGGAAGCTGTTGA+TGG | 0.442071 | 2.2:-57511271 | MS.gene02124:intron |
AGAAGTGACATTGTTGATGA+AGG | 0.443329 | 2.2:+57509552 | None:intergenic |
CTAATGAATATTCTAAAGGT+TGG | 0.445734 | 2.2:-57514010 | MS.gene02124:CDS |
CCCTCCATCAACAACATCAA+TGG | 0.446930 | 2.2:-57512330 | MS.gene02124:CDS |
CTTGTTCACAATAGCGTAGA+AGG | 0.453227 | 2.2:+57514144 | None:intergenic |
ATGTTGTTGATGGAGGGATC+TGG | 0.453243 | 2.2:+57512336 | None:intergenic |
GAATGCTTCATAGATCCTTT+GGG | 0.455281 | 2.2:-57509636 | MS.gene02124:CDS |
ACCGCCATCTACCCAACAAC+TGG | 0.455561 | 2.2:-57512135 | MS.gene02124:CDS |
GAGATTGCACACATTTCAAC+TGG | 0.456031 | 2.2:-57510361 | MS.gene02124:CDS |
CCCACTAAGAAAATCAGATC+TGG | 0.461665 | 2.2:-57512282 | MS.gene02124:CDS |
ATTTCTGTTCTTCTGCATGT+TGG | 0.465349 | 2.2:+57515389 | None:intergenic |
AACAAGTTGAAGCTGGTACT+TGG | 0.466646 | 2.2:-57514127 | MS.gene02124:CDS |
GAAACATCCAAGTGGAAGAA+TGG | 0.468632 | 2.2:+57514060 | None:intergenic |
TCTTCATCAGAAAATTTATG+AGG | 0.468658 | 2.2:-57515255 | MS.gene02124:CDS |
CCCATTGATGTTGTTGATGG+AGG | 0.469880 | 2.2:+57512329 | None:intergenic |
TCTTGCTATCTAAGGATTGT+GGG | 0.474566 | 2.2:+57512639 | None:intergenic |
TGTGATATAGCCACGGAGCT+TGG | 0.475429 | 2.2:-57518069 | MS.gene02124:CDS |
TTAACATGAGGTGGCGGCTC+CGG | 0.476393 | 2.2:+57512191 | None:intergenic |
ACAATTGAAGTGCTTGAAGA+AGG | 0.478953 | 2.2:-57514356 | MS.gene02124:CDS |
CACTTCGCGCGGAGAATGAA+AGG | 0.480846 | 2.2:-57516875 | MS.gene02124:CDS |
AATTCTCGAGATGGTACAAA+AGG | 0.482781 | 2.2:+57514170 | None:intergenic |
GGTAACAACAAGAGGATTGA+TGG | 0.485391 | 2.2:+57512371 | None:intergenic |
TGAGGTGGCGGCTCCGGTGG+AGG | 0.485777 | 2.2:+57512197 | None:intergenic |
AATGTGAGACTTAACCCATA+AGG | 0.489274 | 2.2:+57515292 | None:intergenic |
ACCATGTGAGTCTAAAGAAC+GGG | 0.489947 | 2.2:+57512604 | None:intergenic |
ATGTGAGACTTAACCCATAA+GGG | 0.491613 | 2.2:+57515293 | None:intergenic |
AAACAAAAGGAGTCAACAAA+AGG | 0.492314 | 2.2:-57518013 | MS.gene02124:intron |
CTAAAAGCAACTTAACCAAA+TGG | 0.494670 | 2.2:+57515144 | None:intergenic |
ACATGAGGTGGCGGCTCCGG+TGG | 0.498514 | 2.2:+57512194 | None:intergenic |
CCTCCATCAACAACATCAAT+GGG | 0.499717 | 2.2:-57512329 | MS.gene02124:CDS |
AGATGGCGGTAGCAGATCCA+TGG | 0.501008 | 2.2:+57512148 | None:intergenic |
ATCTTGCTATCTAAGGATTG+TGG | 0.501981 | 2.2:+57512638 | None:intergenic |
CCCAACTATTGTTACAAAAG+CGG | 0.502689 | 2.2:-57514381 | MS.gene02124:CDS |
CACTTCGAGCGGAGAATGAA+AGG | 0.507621 | 2.2:-57517815 | MS.gene02124:CDS |
CAAGAACAACCAAATGAAAG+AGG | 0.509196 | 2.2:-57516844 | MS.gene02124:CDS |
TCTTTATTGTATTTGAGATG+AGG | 0.509325 | 2.2:+57519387 | None:intergenic |
TGAGTAATCATATGATACAT+TGG | 0.511464 | 2.2:+57514097 | None:intergenic |
ATCATATGATTACTCAAAAG+AGG | 0.511798 | 2.2:-57514090 | MS.gene02124:CDS |
GCTTCCGGGGAGGCCGTACA+CGG | 0.513866 | 2.2:+57512081 | None:intergenic |
ACGATAGTCAATCTCATTCG+AGG | 0.514712 | 2.2:-57509507 | MS.gene02124:CDS |
CGAGAACAACCAAATGAAAG+AGG | 0.517989 | 2.2:-57517784 | MS.gene02124:CDS |
CATCGTTGCTCAGCCGTGTA+CGG | 0.520937 | 2.2:-57512094 | MS.gene02124:CDS |
CCTATTATTGATCATTTCAA+CGG | 0.522352 | 2.2:-57515224 | MS.gene02124:CDS |
TTAATGGAATCCTTAAAATC+CGG | 0.522496 | 2.2:+57509582 | None:intergenic |
GGCTGAGCAACGATGATGGA+TGG | 0.523890 | 2.2:+57512102 | None:intergenic |
CCTTTGTCAGACATAGAAGA+TGG | 0.524339 | 2.2:-57511284 | MS.gene02124:CDS |
GTTATCCGCCTTTGGCCCCA+TGG | 0.524925 | 2.2:-57512165 | MS.gene02124:CDS |
TTCATTCTCCGCTCGAAGTG+CGG | 0.534827 | 2.2:+57517818 | None:intergenic |
CTCGATCACACGTCCTCCAC+CGG | 0.537184 | 2.2:-57512210 | MS.gene02124:CDS |
CGAATGAGATTGACTATCGT+TGG | 0.541472 | 2.2:+57509510 | None:intergenic |
ATTTCGACTACACTTGGTCT+CGG | 0.541639 | 2.2:+57511374 | None:intergenic |
AACAAGCTCCGCACTTCGAG+CGG | 0.542911 | 2.2:-57517826 | MS.gene02124:CDS |
TAGTGGGATGATAATTATCA+AGG | 0.543064 | 2.2:-57510397 | MS.gene02124:CDS |
ATGGACTCCATTCTTCCACT+TGG | 0.544255 | 2.2:-57514067 | MS.gene02124:CDS |
CCATTGATGTTGTTGATGGA+GGG | 0.544928 | 2.2:+57512330 | None:intergenic |
TTCAAGTTGAAGTTGTTGCA+TGG | 0.545091 | 2.2:+57516758 | None:intergenic |
TTCAAGTTGAAGTTGTTGCA+TGG | 0.545091 | 2.2:+57517698 | None:intergenic |
TCAGCCGTGTACGGCCTCCC+CGG | 0.548043 | 2.2:-57512085 | MS.gene02124:CDS |
GAGAGGGAGGCCTTCTGGAT+CGG | 0.548661 | 2.2:+57512236 | None:intergenic |
ACACGGCTGAGCAACGATGA+TGG | 0.550995 | 2.2:+57512098 | None:intergenic |
GGAACCTGAAAACGTCCTGC+AGG | 0.552134 | 2.2:+57510912 | None:intergenic |
GCTGAGCAACGATGATGGAT+GGG | 0.554608 | 2.2:+57512103 | None:intergenic |
TGAAACCAAAGATTGACTAA+AGG | 0.558649 | 2.2:+57511632 | None:intergenic |
TAGCAGATCCATGGGGCCAA+AGG | 0.560298 | 2.2:+57512157 | None:intergenic |
GAGGATTGATGGTGGTGATG+TGG | 0.561686 | 2.2:+57512382 | None:intergenic |
GACTTCTTAAGAGATCCTGC+AGG | 0.565690 | 2.2:-57510927 | MS.gene02124:CDS |
GACGTGTGATCGAGAGAGAG+AGG | 0.566236 | 2.2:+57512219 | None:intergenic |
AACTAGCTCTGCACTTCGCG+CGG | 0.567018 | 2.2:-57516886 | MS.gene02124:CDS |
TAAAGGAGAAAACACAACAT+AGG | 0.568052 | 2.2:+57509611 | None:intergenic |
TATGATTACTCAAAAGAGGA+TGG | 0.568227 | 2.2:-57514086 | MS.gene02124:CDS |
GGATCGGAACCTCAGAGGAA+TGG | 0.569155 | 2.2:+57512252 | None:intergenic |
AACTGTTTAACATGAGGTGG+CGG | 0.570815 | 2.2:+57512185 | None:intergenic |
ACGCTCATTTCGACTACACT+TGG | 0.572036 | 2.2:+57511368 | None:intergenic |
GATGGCGGTAGCAGATCCAT+GGG | 0.572670 | 2.2:+57512149 | None:intergenic |
AATTATCACCACACCGTTTG+GGG | 0.574452 | 2.2:+57509662 | None:intergenic |
AACATGTCTATTTATGATAG+CGG | 0.583376 | 2.2:-57513337 | MS.gene02124:CDS |
CGGAAGCCGCCAGACAAAAG+TGG | 0.585502 | 2.2:-57512065 | MS.gene02124:intron |
TTGTTGATGGAGGGATCTGG+TGG | 0.586073 | 2.2:+57512339 | None:intergenic |
GGTTTCATGGGTTGAACATG+TGG | 0.586718 | 2.2:-57513485 | MS.gene02124:CDS |
ACAAGTTGAAGCTGGTACTT+GGG | 0.588116 | 2.2:-57514126 | MS.gene02124:CDS |
CTGAGCAACGATGATGGATG+GGG | 0.588696 | 2.2:+57512104 | None:intergenic |
AGAAGGTAAAATTCTCGAGA+TGG | 0.590134 | 2.2:+57514161 | None:intergenic |
ATGTGTGCAATCTCATGCAT+TGG | 0.597886 | 2.2:+57510370 | None:intergenic |
GATAACTGTTTAACATGAGG+TGG | 0.600038 | 2.2:+57512182 | None:intergenic |
TATAGCCACGGAGCTTGGGA+TGG | 0.601253 | 2.2:-57518064 | MS.gene02124:CDS |
AAATGCTCGTCTCAAAGAAG+AGG | 0.602513 | 2.2:-57516736 | MS.gene02124:intron |
AAATGCTCGTCTCAAAGAAG+AGG | 0.602513 | 2.2:-57517676 | MS.gene02124:intron |
TTGTCTGGCGGCTTCCGGGG+AGG | 0.605207 | 2.2:+57512071 | None:intergenic |
TATGGGTTGGTAACAACAAG+AGG | 0.605968 | 2.2:+57512363 | None:intergenic |
CAGATCCATGGGGCCAAAGG+CGG | 0.608132 | 2.2:+57512160 | None:intergenic |
TGATGGATCAAGCATCCAGA+AGG | 0.609676 | 2.2:+57514038 | None:intergenic |
TATTGTGAACAAGTTGAAGC+TGG | 0.610611 | 2.2:-57514134 | MS.gene02124:CDS |
GGTGCATCTCTCTCATCGAA+TGG | 0.618887 | 2.2:-57512708 | MS.gene02124:CDS |
GGGATCTGGTGGATATGGGT+TGG | 0.623009 | 2.2:+57512350 | None:intergenic |
TACCATGTGAGTCTAAAGAA+CGG | 0.624657 | 2.2:+57512603 | None:intergenic |
ACGTGTGATCGAGAGAGAGA+GGG | 0.625659 | 2.2:+57512220 | None:intergenic |
CTCTGAGGTTCCGATCCAGA+AGG | 0.630973 | 2.2:-57512246 | MS.gene02124:CDS |
TGTGATCGAGAGAGAGAGGG+AGG | 0.632404 | 2.2:+57512223 | None:intergenic |
GATGTTTGACTTGCTTAACA+AGG | 0.643929 | 2.2:+57512661 | None:intergenic |
AAGCACGTTTCGATTACAAG+TGG | 0.648165 | 2.2:+57511791 | None:intergenic |
AAGAATAAGATATCATGCAG+TGG | 0.648893 | 2.2:-57516816 | MS.gene02124:CDS |
AAGAATAAGATATCATGCAG+TGG | 0.648893 | 2.2:-57517756 | MS.gene02124:CDS |
CCATCTTCTATGTCTGACAA+AGG | 0.653287 | 2.2:+57511284 | None:intergenic |
ACTTAAAGGAAAGAAGAGTG+TGG | 0.653545 | 2.2:-57512729 | MS.gene02124:CDS |
ATGTCTATTTATGATAGCGG+AGG | 0.654390 | 2.2:-57513334 | MS.gene02124:intron |
GCGGATAACTGTTTAACATG+AGG | 0.654604 | 2.2:+57512179 | None:intergenic |
ATTATCACCACACCGTTTGG+GGG | 0.657117 | 2.2:+57509663 | None:intergenic |
ACCCGTTCTTTAGACTCACA+TGG | 0.658756 | 2.2:-57512605 | MS.gene02124:intron |
GCAAAGATGTGATATAGCCA+CGG | 0.659016 | 2.2:-57518076 | MS.gene02124:CDS |
ACCAGTTGTTGGGTAGATGG+CGG | 0.659939 | 2.2:+57512134 | None:intergenic |
AAAATGGACTCATCTTCAAG+AGG | 0.661814 | 2.2:-57519434 | MS.gene02124:CDS |
CTTCTGGATCGGAACCTCAG+AGG | 0.670793 | 2.2:+57512247 | None:intergenic |
AACACAACATAGGATCCCAA+AGG | 0.672462 | 2.2:+57509621 | None:intergenic |
ATTGCACACATTTCAACTGG+TGG | 0.679678 | 2.2:-57510358 | MS.gene02124:CDS |
CCATCAACAACATCAATGGG+AGG | 0.682921 | 2.2:-57512326 | MS.gene02124:CDS |
TCCAGAAGGAAACATCCAAG+TGG | 0.683818 | 2.2:+57514052 | None:intergenic |
CGTTGGAGTGACAAAGCCAG+AGG | 0.685710 | 2.2:+57509527 | None:intergenic |
GGATCTAAACCATTCCTCTG+AGG | 0.688037 | 2.2:-57512261 | MS.gene02124:CDS |
TAGTCGAAATGAGCGTGATG+TGG | 0.702627 | 2.2:-57511361 | MS.gene02124:CDS |
TGGATCCATCCCAAGCTCCG+TGG | 0.704130 | 2.2:+57518059 | None:intergenic |
AACAACAAGAGGATTGATGG+TGG | 0.781816 | 2.2:+57512374 | None:intergenic |
ATGGCGGTAGCAGATCCATG+GGG | 0.791433 | 2.2:+57512150 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 57509482 | 57519453 | 57509482 | ID=MS.gene02124 |
chr2.2 | mRNA | 57509482 | 57519453 | 57509482 | ID=MS.gene02124.t1;Parent=MS.gene02124 |
chr2.2 | exon | 57519341 | 57519453 | 57519341 | ID=MS.gene02124.t1.exon1;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57519341 | 57519453 | 57519341 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57518014 | 57518131 | 57518014 | ID=MS.gene02124.t1.exon2;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57518014 | 57518131 | 57518014 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57517677 | 57517865 | 57517677 | ID=MS.gene02124.t1.exon3;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57517677 | 57517865 | 57517677 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57516737 | 57516925 | 57516737 | ID=MS.gene02124.t1.exon4;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57516737 | 57516925 | 57516737 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57515139 | 57515489 | 57515139 | ID=MS.gene02124.t1.exon5;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57515139 | 57515489 | 57515139 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57514322 | 57514423 | 57514322 | ID=MS.gene02124.t1.exon6;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57514322 | 57514423 | 57514322 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57513995 | 57514219 | 57513995 | ID=MS.gene02124.t1.exon7;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57513995 | 57514219 | 57513995 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57513335 | 57513506 | 57513335 | ID=MS.gene02124.t1.exon8;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57513335 | 57513506 | 57513335 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57512606 | 57512761 | 57512606 | ID=MS.gene02124.t1.exon9;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57512606 | 57512761 | 57512606 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57512066 | 57512419 | 57512066 | ID=MS.gene02124.t1.exon10;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57512066 | 57512419 | 57512066 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57511605 | 57511828 | 57511605 | ID=MS.gene02124.t1.exon11;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57511605 | 57511828 | 57511605 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57511272 | 57511415 | 57511272 | ID=MS.gene02124.t1.exon12;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57511272 | 57511415 | 57511272 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57510917 | 57510958 | 57510917 | ID=MS.gene02124.t1.exon13;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57510917 | 57510958 | 57510917 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57510327 | 57510416 | 57510327 | ID=MS.gene02124.t1.exon14;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57510327 | 57510416 | 57510327 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
chr2.2 | exon | 57509482 | 57509700 | 57509482 | ID=MS.gene02124.t1.exon15;Parent=MS.gene02124.t1 |
chr2.2 | CDS | 57509482 | 57509700 | 57509482 | ID=cds.MS.gene02124.t1;Parent=MS.gene02124.t1 |
Gene Sequence |
Protein sequence |