AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021401

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021401.t1 MTR_1g006650 94.767 344 14 2 1 340 1 344 0.0 648
MS.gene021401.t1 MTR_3g109760 55.455 330 106 8 19 340 22 318 2.45e-105 311
MS.gene021401.t1 MTR_8g013950 46.291 337 133 12 23 340 35 342 8.08e-77 239
MS.gene021401.t1 MTR_8g076340 45.854 205 93 5 96 300 102 288 1.58e-45 157
MS.gene021401.t1 MTR_4g071590 34.615 312 141 10 5 299 15 280 5.84e-44 153
MS.gene021401.t1 MTR_4g471590 34.615 312 141 10 5 299 15 280 5.84e-44 153
MS.gene021401.t1 MTR_3g117380 38.140 215 115 3 87 300 102 299 8.88e-40 142
MS.gene021401.t1 MTR_6g032830 38.696 230 106 7 101 296 30 258 1.72e-39 140
MS.gene021401.t1 MTR_5g021340 43.723 231 96 7 94 300 150 370 2.55e-39 143
MS.gene021401.t1 MTR_1g094930 35.144 313 143 11 27 294 9 306 2.24e-37 137
MS.gene021401.t1 MTR_1g046680 78.873 71 15 0 229 299 171 241 1.20e-34 127
MS.gene021401.t1 MTR_5g007600 74.648 71 18 0 229 299 258 328 4.68e-33 125
MS.gene021401.t1 MTR_5g007600 72.222 72 20 0 229 300 156 227 1.15e-29 116
MS.gene021401.t1 MTR_7g085410 39.545 220 93 8 105 294 43 252 6.02e-33 123
MS.gene021401.t1 MTR_1g094930 78.462 65 14 0 230 294 147 211 1.09e-32 122
MS.gene021401.t1 MTR_1g116010 55.963 109 43 2 209 316 142 246 6.44e-32 120
MS.gene021401.t1 MTR_2g094600 76.923 65 15 0 230 294 216 280 1.58e-31 120
MS.gene021401.t1 MTR_4g058910 73.134 67 18 0 230 296 314 380 2.84e-30 119
MS.gene021401.t1 MTR_7g446110 62.903 62 23 0 230 291 187 248 3.65e-21 91.3
MS.gene021401.t1 MTR_7g445950 58.065 62 26 0 230 291 120 181 5.10e-19 84.0
MS.gene021401.t1 MTR_7g446070 47.059 85 44 1 207 291 110 193 8.97e-19 83.6
MS.gene021401.t1 MTR_7g445980 62.712 59 21 1 234 291 37 95 1.48e-18 80.1
MS.gene021401.t1 MTR_7g112330 70.588 34 10 0 232 265 24 57 2.78e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021401.t1 AT5G25830 56.226 265 99 7 93 340 67 331 4.11e-90 273
MS.gene021401.t1 AT4G32890 43.284 335 133 9 21 340 16 308 8.21e-79 243
MS.gene021401.t1 AT3G60530 47.826 207 64 6 93 298 63 226 2.55e-49 165
MS.gene021401.t1 AT2G45050 42.857 238 80 7 89 310 60 257 9.07e-49 165
MS.gene021401.t1 AT5G66320 38.889 270 115 8 69 312 86 331 7.80e-41 146
MS.gene021401.t1 AT5G66320 38.889 270 115 8 69 312 86 331 7.80e-41 146
MS.gene021401.t1 AT4G36240 36.140 285 110 9 22 297 10 231 1.38e-36 132
MS.gene021401.t1 AT4G34680 38.249 217 83 5 90 299 77 249 4.87e-36 131
MS.gene021401.t1 AT4G34680 38.249 217 83 5 90 299 77 249 4.87e-36 131
MS.gene021401.t1 AT3G51080 33.981 309 158 10 6 298 11 289 1.45e-34 129
MS.gene021401.t1 AT3G24050 74.286 70 18 0 229 298 193 262 2.58e-33 124
MS.gene021401.t1 AT1G08010 65.476 84 23 1 225 302 215 298 4.14e-33 125
MS.gene021401.t1 AT1G08010 65.476 84 23 1 225 302 215 298 4.14e-33 125
MS.gene021401.t1 AT1G08010 65.476 84 23 1 225 302 215 298 4.14e-33 125
MS.gene021401.t1 AT1G08000 70.833 72 21 0 225 296 213 284 3.98e-31 119
MS.gene021401.t1 AT1G08000 70.833 72 21 0 225 296 213 284 3.98e-31 119
MS.gene021401.t1 AT3G54810 62.963 81 30 0 230 310 229 309 6.31e-31 119
MS.gene021401.t1 AT3G54810 62.963 81 30 0 230 310 229 309 6.31e-31 119
MS.gene021401.t1 AT3G45170 43.846 130 62 2 178 298 56 183 1.09e-26 105
MS.gene021401.t1 AT2G28340 69.841 63 19 0 232 294 193 255 1.27e-26 107

Find 118 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTCACTGTCCTTTCTTCT+TGG 0.090798 1.2:+12378341 None:intergenic
AAAACGATTCCTCATCAATA+TGG 0.237248 1.2:+12378654 None:intergenic
TCAAAAGATGCAACTGATAT+CGG 0.281999 1.2:-12378618 MS.gene021401:CDS
CCAATATCAGGAACGACATT+AGG 0.287162 1.2:+12379234 None:intergenic
GCAGTCTTTGCCTGCTTCCT+TGG 0.291400 1.2:+12378365 None:intergenic
TACTCTGATGTTGTAAAATC+TGG 0.292416 1.2:+12378063 None:intergenic
TATATTCAACAAGGAAGTTT+TGG 0.298704 1.2:-12378531 MS.gene021401:CDS
CTAGCTGCAGGCCTGTATTC+AGG 0.333508 1.2:+12378185 None:intergenic
CTCCGGAGACCTGTGTGTTC+CGG 0.345236 1.2:-12379184 MS.gene021401:intron
CCTAATGTCGTTCCTGATAT+TGG 0.361673 1.2:-12379234 MS.gene021401:CDS
AAAACTTCCTTGTTGAATAT+AGG 0.362486 1.2:+12378533 None:intergenic
CGACGTCATTGTTGAGGTTA+AGG 0.370723 1.2:+12379379 None:intergenic
TGTTGAATATAGGACTGTTT+CGG 0.382615 1.2:+12378543 None:intergenic
AAGACACCACAATGGCGAAC+CGG 0.386976 1.2:-12378272 MS.gene021401:CDS
ACGATGCGAGTTGGAGTGTT+TGG 0.387998 1.2:+12378145 None:intergenic
AAATTCTGACAGCCAATATC+AGG 0.389939 1.2:+12379222 None:intergenic
TTACTTGATTCACCAACATA+TGG 0.405233 1.2:-12378012 MS.gene021401:CDS
AGGACTGTTTCGGTTGGGTT+GGG 0.406165 1.2:+12378553 None:intergenic
GTTGGGTTGGGAAAGCTCAC+GGG 0.412320 1.2:+12378565 None:intergenic
CAATGGCGAACCGGGCCTAA+TGG 0.414512 1.2:-12378263 MS.gene021401:CDS
CACACAGGTCTCCGGAGAAA+TGG 0.416213 1.2:+12379190 None:intergenic
ATGATTTAGCGGCCCTGGAC+TGG 0.417138 1.2:-12378682 MS.gene021401:CDS
CAATATCAGGAACGACATTA+GGG 0.440367 1.2:+12379235 None:intergenic
CTCTTGCTACGGGCCTTAGC+TGG 0.442400 1.2:+12378506 None:intergenic
TGTCGGAGGAAAAGGTGGTT+TGG 0.443866 1.2:+12379436 None:intergenic
GGTTGGGTTGGGAAAGCTCA+CGG 0.448750 1.2:+12378564 None:intergenic
TACATCATCTGCCTAAAATC+AGG 0.450652 1.2:+12377987 None:intergenic
AACGGTAACGGTGGAGGAAG+AGG 0.459150 1.2:+12379296 None:intergenic
AATATAGGACTGTTTCGGTT+GGG 0.459476 1.2:+12378548 None:intergenic
GGAGGATGATTTAGCGGCCC+TGG 0.462612 1.2:-12378687 MS.gene021401:CDS
TAGGACTGTTTCGGTTGGGT+TGG 0.462649 1.2:+12378552 None:intergenic
AGTGTTGTTGTCGGAGGAAA+AGG 0.462952 1.2:+12379428 None:intergenic
AAGGACAGTGACGGAGGGTC+AGG 0.466229 1.2:-12378332 MS.gene021401:CDS
GAGGCAGAAGGAAATGTTGC+GGG 0.466463 1.2:-12378105 MS.gene021401:CDS
TACTTGATTCACCAACATAT+GGG 0.466490 1.2:-12378011 MS.gene021401:CDS
GTCGATTGGTGCCTGAATAC+AGG 0.470023 1.2:-12378196 MS.gene021401:CDS
AGACACCACAATGGCGAACC+GGG 0.471491 1.2:-12378271 MS.gene021401:CDS
GCCCACGAGTCCTCTTGCTA+CGG 0.473059 1.2:+12378495 None:intergenic
GAATATAGGACTGTTTCGGT+TGG 0.481982 1.2:+12378547 None:intergenic
GCTCACGGGGTTCTTCATCC+TGG 0.486213 1.2:+12378579 None:intergenic
GTTAGCTCGTCATCATTGTC+CGG 0.486841 1.2:-12379264 MS.gene021401:CDS
CAAAAGATGCAACTGATATC+GGG 0.494290 1.2:-12378617 MS.gene021401:CDS
AAACGATTCCTCATCAATAT+GGG 0.498163 1.2:+12378655 None:intergenic
AATCAAGTAATCATCATTGT+TGG 0.499207 1.2:+12378025 None:intergenic
TGTTTGGTCAGCACAAATGT+AGG 0.504596 1.2:+12378161 None:intergenic
ATCGTAAAGTGTTGGAGCTA+CGG 0.505579 1.2:-12378127 MS.gene021401:CDS
AAGGTTGGTGTCGGAAATGA+TGG 0.507635 1.2:+12379344 None:intergenic
GGTGGTTTGGAAAATGTTGT+TGG 0.508256 1.2:+12379449 None:intergenic
TACCGACAATTTCATTGTTG+AGG 0.524862 1.2:-12379406 MS.gene021401:CDS
TACCGGAACACACAGGTCTC+CGG 0.525459 1.2:+12379182 None:intergenic
ATTGACAACGGTAACGGTGG+AGG 0.527850 1.2:+12379290 None:intergenic
GAAATAGGAGGATGATTTAG+CGG 0.531982 1.2:-12378693 MS.gene021401:intron
GCCCGTAGCAAGAGGACTCG+TGG 0.533598 1.2:-12378497 MS.gene021401:CDS
AAGATACAAGTCGGGTCGAT+TGG 0.534399 1.2:-12378210 MS.gene021401:CDS
TTCCGACACCAACCTTGACT+CGG 0.534554 1.2:-12379337 MS.gene021401:CDS
CCCACGAGTCCTCTTGCTAC+GGG 0.537511 1.2:+12378496 None:intergenic
GGGCATGAAGGTGCGAAACC+AGG 0.537637 1.2:-12378597 MS.gene021401:CDS
GACGGAGGGTCAGGTGGAGA+TGG 0.539597 1.2:-12378323 MS.gene021401:CDS
GTTGTTGTCGGAGGAAAAGG+TGG 0.541025 1.2:+12379431 None:intergenic
TGGAACAGTGACGGTAGGTA+AGG 0.543018 1.2:+12378385 None:intergenic
AACAGTGACGGTAGGTAAGG+TGG 0.543787 1.2:+12378388 None:intergenic
GAGGGTCAGGTGGAGATGGT+CGG 0.544742 1.2:-12378319 MS.gene021401:CDS
CGTCACTGTTCCAAGGAAGC+AGG 0.545318 1.2:-12378375 MS.gene021401:CDS
CAACACTTTACGATGCGAGT+TGG 0.550252 1.2:+12378136 None:intergenic
CAATATGGGAAATCCAGTCC+AGG 0.555569 1.2:+12378669 None:intergenic
AAAGACTGCTCCAAGAAGAA+AGG 0.555772 1.2:-12378351 MS.gene021401:CDS
GACAGTGACGGAGGGTCAGG+TGG 0.558691 1.2:-12378329 MS.gene021401:CDS
ACAAATGTAGGGCTAGCTGC+AGG 0.560737 1.2:+12378173 None:intergenic
ACAGTGACGGTAGGTAAGGT+GGG 0.561238 1.2:+12378389 None:intergenic
GACGTGAGCTCCAGTCACAA+GGG 0.561794 1.2:+12378471 None:intergenic
AACGCTATTGACAACGGTAA+CGG 0.563315 1.2:+12379284 None:intergenic
GTCCTCAACAATGAAATTGT+CGG 0.566137 1.2:+12379404 None:intergenic
GCAACTGATATCGGGCATGA+AGG 0.569194 1.2:-12378609 MS.gene021401:CDS
TAAAATCAGGTCCCATATGT+TGG 0.573858 1.2:+12378000 None:intergenic
GTTTGGTCAGCACAAATGTA+GGG 0.574012 1.2:+12378162 None:intergenic
CCCGTAGCAAGAGGACTCGT+GGG 0.574146 1.2:-12378496 MS.gene021401:CDS
AGACGTGAGCTCCAGTCACA+AGG 0.578089 1.2:+12378470 None:intergenic
TTGGGTTGGGAAAGCTCACG+GGG 0.578980 1.2:+12378566 None:intergenic
CAGCTAAGGCCCGTAGCAAG+AGG 0.579929 1.2:-12378505 MS.gene021401:CDS
AGTTGATTGTGGCCGAGTCA+AGG 0.579938 1.2:+12379325 None:intergenic
GGCCGAGTCAAGGTTGGTGT+CGG 0.584263 1.2:+12379335 None:intergenic
TTAGGCCCGGTTCGCCATTG+TGG 0.587065 1.2:+12378266 None:intergenic
TTAGCTCGTCATCATTGTCC+GGG 0.587117 1.2:-12379263 MS.gene021401:CDS
TTGTGGTGTAAGATACAAGT+CGG 0.589234 1.2:-12378219 MS.gene021401:CDS
CTGCTTCCTTGGAACAGTGA+CGG 0.590093 1.2:+12378376 None:intergenic
ATTCCCTACGTAGGAATGGA+AGG 0.590186 1.2:-12379477 None:intergenic
ATTGTCGGTAGTGTTGTTGT+CGG 0.590207 1.2:+12379419 None:intergenic
GGTCAGGTGGAGATGGTCGG+AGG 0.590443 1.2:-12378316 MS.gene021401:CDS
GTCGGTAGTGTTGTTGTCGG+AGG 0.590547 1.2:+12379422 None:intergenic
TACCTACCGTCACTGTTCCA+AGG 0.593877 1.2:-12378382 MS.gene021401:CDS
CGTCGTCGACGTCATTGTTG+AGG 0.596242 1.2:+12379373 None:intergenic
CTGGATTTCCCATATTGATG+AGG 0.600285 1.2:-12378663 MS.gene021401:CDS
AACGACATTAGGGTCGCACC+CGG 0.603894 1.2:+12379245 None:intergenic
CAACTCGCATCGTAAAGTGT+TGG 0.604228 1.2:-12378135 MS.gene021401:CDS
TGTGGTGTAAGATACAAGTC+GGG 0.608929 1.2:-12378218 MS.gene021401:CDS
GTTGGAGCTACGGAGGCAGA+AGG 0.611025 1.2:-12378117 MS.gene021401:CDS
CGTCATTGTTGAGGTTAAGG+AGG 0.612987 1.2:+12379382 None:intergenic
GATTGTGGCCGAGTCAAGGT+TGG 0.615453 1.2:+12379329 None:intergenic
AGAGGCGGTTGAGTTGATTG+TGG 0.620913 1.2:+12379314 None:intergenic
ACGTGAGCTCCAGTCACAAG+GGG 0.635190 1.2:+12378472 None:intergenic
GAAGAAAGGACAGTGACGGA+GGG 0.637953 1.2:-12378337 MS.gene021401:CDS
AAAACATTATGCAACGCTTG+TGG 0.638941 1.2:-12378236 MS.gene021401:CDS
CCAAGAAGAAAGGACAGTGA+CGG 0.640630 1.2:-12378341 MS.gene021401:CDS
AGAAGAAAGGACAGTGACGG+AGG 0.643844 1.2:-12378338 MS.gene021401:CDS
CAGTGACGGTAGGTAAGGTG+GGG 0.651207 1.2:+12378390 None:intergenic
AATATGGGAAATCCAGTCCA+GGG 0.656494 1.2:+12378670 None:intergenic
GCTATTGACAACGGTAACGG+TGG 0.661326 1.2:+12379287 None:intergenic
GTAAAGTGTTGGAGCTACGG+AGG 0.667005 1.2:-12378124 MS.gene021401:CDS
GGAGGCAGAAGGAAATGTTG+CGG 0.675658 1.2:-12378106 MS.gene021401:CDS
AGTTCTGACTCAGAAGAAGA+CGG 0.679246 1.2:+12378425 None:intergenic
TTCCTTGGAACAGTGACGGT+AGG 0.684302 1.2:+12378380 None:intergenic
AGTGACGGTAGGTAAGGTGG+GGG 0.685489 1.2:+12378391 None:intergenic
TATAATATACCGGAACACAC+AGG 0.691414 1.2:+12379175 None:intergenic
GGTAACGGTGGAGGAAGAGG+CGG 0.696096 1.2:+12379299 None:intergenic
AAACAGTCCTATATTCAACA+AGG 0.707758 1.2:-12378540 MS.gene021401:CDS
CGAGCTAACGCTATTGACAA+CGG 0.719172 1.2:+12379278 None:intergenic
CGTGAGCTCCAGTCACAAGG+GGG 0.727741 1.2:+12378473 None:intergenic
TGACAGACAAGACACCACAA+TGG 0.739729 1.2:-12378280 MS.gene021401:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATACACATATAATATAC+CGG + chr1.2:12378286-12378305 None:intergenic 20.0%
!!! TTTGTGTTGAAATTTGAAAT+AGG - chr1.2:12378740-12378759 MS.gene021401:intron 20.0%
!!! TTTTGTGATACTCAATAATT+TGG + chr1.2:12378586-12378605 None:intergenic 20.0%
! AAAACTTCCTTGTTGAATAT+AGG + chr1.2:12378918-12378937 None:intergenic 25.0%
! AATCAAGTAATCATCATTGT+TGG + chr1.2:12379426-12379445 None:intergenic 25.0%
! CTGAAATTATTGGCAAAAAA+GGG + chr1.2:12378468-12378487 None:intergenic 25.0%
! GTATGAGTTAGAAATTTACA+TGG + chr1.2:12378405-12378424 None:intergenic 25.0%
!! TATATTCAACAAGGAAGTTT+TGG - chr1.2:12378917-12378936 MS.gene021401:intron 25.0%
!!! GTTTTTTCTCCTGAAATTAT+TGG + chr1.2:12378478-12378497 None:intergenic 25.0%
AAAACGATTCCTCATCAATA+TGG + chr1.2:12378797-12378816 None:intergenic 30.0%
AAACAGTCCTATATTCAACA+AGG - chr1.2:12378908-12378927 MS.gene021401:intron 30.0%
AAACGATTCCTCATCAATAT+GGG + chr1.2:12378796-12378815 None:intergenic 30.0%
CCTGAAATTATTGGCAAAAA+AGG + chr1.2:12378469-12378488 None:intergenic 30.0%
TACTCTGATGTTGTAAAATC+TGG + chr1.2:12379388-12379407 None:intergenic 30.0%
TACTTGATTCACCAACATAT+GGG - chr1.2:12379437-12379456 MS.gene021401:CDS 30.0%
TAGGCTAAATACAACAGAAT+GGG - chr1.2:12378505-12378524 MS.gene021401:CDS 30.0%
TCAAAAGATGCAACTGATAT+CGG - chr1.2:12378830-12378849 MS.gene021401:intron 30.0%
TGTTGAATATAGGACTGTTT+CGG + chr1.2:12378908-12378927 None:intergenic 30.0%
TTACTTGATTCACCAACATA+TGG - chr1.2:12379436-12379455 MS.gene021401:CDS 30.0%
! GTGTTGAAATTTGAAATAGG+AGG - chr1.2:12378743-12378762 MS.gene021401:intron 30.0%
! TGTTTCAAGAGCATATATAG+AGG - chr1.2:12378706-12378725 MS.gene021401:intron 30.0%
!!! CCTTTTTTGCCAATAATTTC+AGG - chr1.2:12378466-12378485 MS.gene021401:CDS 30.0%
!!! GTTGTAAAATCTGGTTTTGT+TGG + chr1.2:12379379-12379398 None:intergenic 30.0%
AAAACATTATGCAACGCTTG+TGG - chr1.2:12379212-12379231 MS.gene021401:CDS 35.0%
AAATTCTGACAGCCAATATC+AGG + chr1.2:12378229-12378248 None:intergenic 35.0%
AATATAGGACTGTTTCGGTT+GGG + chr1.2:12378903-12378922 None:intergenic 35.0%
AGGAGAAAAAACAACTAGCT+AGG - chr1.2:12378486-12378505 MS.gene021401:CDS 35.0%
AGGCTAAATACAACAGAATG+GGG - chr1.2:12378506-12378525 MS.gene021401:CDS 35.0%
CAAAAGATGCAACTGATATC+GGG - chr1.2:12378831-12378850 MS.gene021401:intron 35.0%
CAATATCAGGAACGACATTA+GGG + chr1.2:12378216-12378235 None:intergenic 35.0%
CTAGGCTAAATACAACAGAA+TGG - chr1.2:12378504-12378523 MS.gene021401:CDS 35.0%
GAAATAGGAGGATGATTTAG+CGG - chr1.2:12378755-12378774 MS.gene021401:intron 35.0%
GTCCTCAACAATGAAATTGT+CGG + chr1.2:12378047-12378066 None:intergenic 35.0%
TAAAATCAGGTCCCATATGT+TGG + chr1.2:12379451-12379470 None:intergenic 35.0%
TACATCATCTGCCTAAAATC+AGG + chr1.2:12379464-12379483 None:intergenic 35.0%
TACCGACAATTTCATTGTTG+AGG - chr1.2:12378042-12378061 MS.gene021401:CDS 35.0%
TATAATATACCGGAACACAC+AGG + chr1.2:12378276-12378295 None:intergenic 35.0%
TTGTGGTGTAAGATACAAGT+CGG - chr1.2:12379229-12379248 MS.gene021401:CDS 35.0%
! AACATATGGGACCTGATTTT+AGG - chr1.2:12379450-12379469 MS.gene021401:CDS 35.0%
!! AAGCGTTGCATAATGTTTTC+GGG + chr1.2:12379211-12379230 None:intergenic 35.0%
!! CAAGCGTTGCATAATGTTTT+CGG + chr1.2:12379212-12379231 None:intergenic 35.0%
!!! AAATCTGGTTTTGTTGGTGT+TGG + chr1.2:12379373-12379392 None:intergenic 35.0%
AAAGACTGCTCCAAGAAGAA+AGG - chr1.2:12379097-12379116 MS.gene021401:intron 40.0%
AACGCTATTGACAACGGTAA+CGG + chr1.2:12378167-12378186 None:intergenic 40.0%
AATATGGGAAATCCAGTCCA+GGG + chr1.2:12378781-12378800 None:intergenic 40.0%
CCAATATCAGGAACGACATT+AGG + chr1.2:12378217-12378236 None:intergenic 40.0%
CCTAATGTCGTTCCTGATAT+TGG - chr1.2:12378214-12378233 MS.gene021401:CDS 40.0%
CTGGATTTCCCATATTGATG+AGG - chr1.2:12378785-12378804 MS.gene021401:intron 40.0%
GAATATAGGACTGTTTCGGT+TGG + chr1.2:12378904-12378923 None:intergenic 40.0%
GTTTGGTCAGCACAAATGTA+GGG + chr1.2:12379289-12379308 None:intergenic 40.0%
TGTGGTGTAAGATACAAGTC+GGG - chr1.2:12379230-12379249 MS.gene021401:CDS 40.0%
TGTTTGGTCAGCACAAATGT+AGG + chr1.2:12379290-12379309 None:intergenic 40.0%
! AGTTCTGACTCAGAAGAAGA+CGG + chr1.2:12379026-12379045 None:intergenic 40.0%
! ATTGTCGGTAGTGTTGTTGT+CGG + chr1.2:12378032-12378051 None:intergenic 40.0%
! GGTGGTTTGGAAAATGTTGT+TGG + chr1.2:12378002-12378021 None:intergenic 40.0%
! TTTTCTGACAGCCATTTCTC+CGG - chr1.2:12378247-12378266 MS.gene021401:CDS 40.0%
!! ATCGTAAAGTGTTGGAGCTA+CGG - chr1.2:12379321-12379340 MS.gene021401:CDS 40.0%
!! CATAATGTTTTCGGGCCATT+AGG + chr1.2:12379203-12379222 None:intergenic 40.0%
AAGATACAAGTCGGGTCGAT+TGG - chr1.2:12379238-12379257 MS.gene021401:CDS 45.0%
ACAGAATGGGGCACATTTCA+CGG - chr1.2:12378518-12378537 MS.gene021401:CDS 45.0%
CAACACTTTACGATGCGAGT+TGG + chr1.2:12379315-12379334 None:intergenic 45.0%
CAACTCGCATCGTAAAGTGT+TGG - chr1.2:12379313-12379332 MS.gene021401:CDS 45.0%
CAATATGGGAAATCCAGTCC+AGG + chr1.2:12378782-12378801 None:intergenic 45.0%
CCAAGAAGAAAGGACAGTGA+CGG - chr1.2:12379107-12379126 MS.gene021401:intron 45.0%
CGACGTCATTGTTGAGGTTA+AGG + chr1.2:12378072-12378091 None:intergenic 45.0%
CGAGCTAACGCTATTGACAA+CGG + chr1.2:12378173-12378192 None:intergenic 45.0%
CGTCATTGTTGAGGTTAAGG+AGG + chr1.2:12378069-12378088 None:intergenic 45.0%
GTTAGCTCGTCATCATTGTC+CGG - chr1.2:12378184-12378203 MS.gene021401:CDS 45.0%
TGACAGACAAGACACCACAA+TGG - chr1.2:12379168-12379187 MS.gene021401:intron 45.0%
TTAGCTCGTCATCATTGTCC+GGG - chr1.2:12378185-12378204 MS.gene021401:CDS 45.0%
! AGTGTTGTTGTCGGAGGAAA+AGG + chr1.2:12378023-12378042 None:intergenic 45.0%
!! AAGGTTGGTGTCGGAAATGA+TGG + chr1.2:12378107-12378126 None:intergenic 45.0%
!! TGAGGAATCGTTTTCAAGCG+AGG - chr1.2:12378803-12378822 MS.gene021401:intron 45.0%
!!! GGAAGTTTTGGTTCCAGCTA+AGG - chr1.2:12378929-12378948 MS.gene021401:intron 45.0%
AACAGTGACGGTAGGTAAGG+TGG + chr1.2:12379063-12379082 None:intergenic 50.0%
AAGACACCACAATGGCGAAC+CGG - chr1.2:12379176-12379195 MS.gene021401:intron 50.0%
ACAGTGACGGTAGGTAAGGT+GGG + chr1.2:12379062-12379081 None:intergenic 50.0%
AGAAGAAAGGACAGTGACGG+AGG - chr1.2:12379110-12379129 MS.gene021401:intron 50.0%
AGGACTGTTTCGGTTGGGTT+GGG + chr1.2:12378898-12378917 None:intergenic 50.0%
AGTTGATTGTGGCCGAGTCA+AGG + chr1.2:12378126-12378145 None:intergenic 50.0%
CCGTCACTGTCCTTTCTTCT+TGG + chr1.2:12379110-12379129 None:intergenic 50.0%
CTGCTTCCTTGGAACAGTGA+CGG + chr1.2:12379075-12379094 None:intergenic 50.0%
GAGGCAGAAGGAAATGTTGC+GGG - chr1.2:12379343-12379362 MS.gene021401:CDS 50.0%
GCAACTGATATCGGGCATGA+AGG - chr1.2:12378839-12378858 MS.gene021401:intron 50.0%
GGAGGCAGAAGGAAATGTTG+CGG - chr1.2:12379342-12379361 MS.gene021401:CDS 50.0%
GTTGTTGTCGGAGGAAAAGG+TGG + chr1.2:12378020-12378039 None:intergenic 50.0%
TACCTACCGTCACTGTTCCA+AGG - chr1.2:12379066-12379085 MS.gene021401:intron 50.0%
TAGGACTGTTTCGGTTGGGT+TGG + chr1.2:12378899-12378918 None:intergenic 50.0%
TGGAACAGTGACGGTAGGTA+AGG + chr1.2:12379066-12379085 None:intergenic 50.0%
TGTCGGAGGAAAAGGTGGTT+TGG + chr1.2:12378015-12378034 None:intergenic 50.0%
TTCCGACACCAACCTTGACT+CGG - chr1.2:12378111-12378130 MS.gene021401:CDS 50.0%
TTCCTTGGAACAGTGACGGT+AGG + chr1.2:12379071-12379090 None:intergenic 50.0%
! ACGATGCGAGTTGGAGTGTT+TGG + chr1.2:12379306-12379325 None:intergenic 50.0%
! ATTGACAACGGTAACGGTGG+AGG + chr1.2:12378161-12378180 None:intergenic 50.0%
! GAAGAAAGGACAGTGACGGA+GGG - chr1.2:12379111-12379130 MS.gene021401:intron 50.0%
! GCTATTGACAACGGTAACGG+TGG + chr1.2:12378164-12378183 None:intergenic 50.0%
! GTCGATTGGTGCCTGAATAC+AGG - chr1.2:12379252-12379271 MS.gene021401:CDS 50.0%
!! ACAAATGTAGGGCTAGCTGC+AGG + chr1.2:12379278-12379297 None:intergenic 50.0%
!! AGAGGCGGTTGAGTTGATTG+TGG + chr1.2:12378137-12378156 None:intergenic 50.0%
!! GTAAAGTGTTGGAGCTACGG+AGG - chr1.2:12379324-12379343 MS.gene021401:CDS 50.0%
AACGACATTAGGGTCGCACC+CGG + chr1.2:12378206-12378225 None:intergenic 55.0%
ACGTGAGCTCCAGTCACAAG+GGG + chr1.2:12378979-12378998 None:intergenic 55.0%
AGACACCACAATGGCGAACC+GGG - chr1.2:12379177-12379196 MS.gene021401:intron 55.0%
AGACGTGAGCTCCAGTCACA+AGG + chr1.2:12378981-12379000 None:intergenic 55.0%
AGTGACGGTAGGTAAGGTGG+GGG + chr1.2:12379060-12379079 None:intergenic 55.0%
ATGATTTAGCGGCCCTGGAC+TGG - chr1.2:12378766-12378785 MS.gene021401:intron 55.0%
CACACAGGTCTCCGGAGAAA+TGG + chr1.2:12378261-12378280 None:intergenic 55.0%
CAGTGACGGTAGGTAAGGTG+GGG + chr1.2:12379061-12379080 None:intergenic 55.0%
CGTCACTGTTCCAAGGAAGC+AGG - chr1.2:12379073-12379092 MS.gene021401:intron 55.0%
CGTCGTCGACGTCATTGTTG+AGG + chr1.2:12378078-12378097 None:intergenic 55.0%
CTAGCTGCAGGCCTGTATTC+AGG + chr1.2:12379266-12379285 None:intergenic 55.0%
GACGTGAGCTCCAGTCACAA+GGG + chr1.2:12378980-12378999 None:intergenic 55.0%
GATTGTGGCCGAGTCAAGGT+TGG + chr1.2:12378122-12378141 None:intergenic 55.0%
GCAGTCTTTGCCTGCTTCCT+TGG + chr1.2:12379086-12379105 None:intergenic 55.0%
GTAAGGTGGGGGTGGGAATA+AGG + chr1.2:12379049-12379068 None:intergenic 55.0%
TACCGGAACACACAGGTCTC+CGG + chr1.2:12378269-12378288 None:intergenic 55.0%
! AACGGTAACGGTGGAGGAAG+AGG + chr1.2:12378155-12378174 None:intergenic 55.0%
! GTCGGTAGTGTTGTTGTCGG+AGG + chr1.2:12378029-12378048 None:intergenic 55.0%
!! GGTTGGGTTGGGAAAGCTCA+CGG + chr1.2:12378887-12378906 None:intergenic 55.0%
!! GTTGGGTTGGGAAAGCTCAC+GGG + chr1.2:12378886-12378905 None:intergenic 55.0%
!! TGTTTTCGGGCCATTAGGCC+CGG + chr1.2:12379198-12379217 None:intergenic 55.0%
!! TTGGGTTGGGAAAGCTCACG+GGG + chr1.2:12378885-12378904 None:intergenic 55.0%
ACGGTAGGTAAGGTGGGGGT+GGG + chr1.2:12379056-12379075 None:intergenic 60.0%
CAATGGCGAACCGGGCCTAA+TGG - chr1.2:12379185-12379204 MS.gene021401:CDS 60.0%
CAGCTAAGGCCCGTAGCAAG+AGG - chr1.2:12378943-12378962 MS.gene021401:intron 60.0%
CCCACGAGTCCTCTTGCTAC+GGG + chr1.2:12378955-12378974 None:intergenic 60.0%
CCCGTAGCAAGAGGACTCGT+GGG - chr1.2:12378952-12378971 MS.gene021401:intron 60.0%
CGTGAGCTCCAGTCACAAGG+GGG + chr1.2:12378978-12378997 None:intergenic 60.0%
CTCCGGAGACCTGTGTGTTC+CGG - chr1.2:12378264-12378283 MS.gene021401:CDS 60.0%
CTCTTGCTACGGGCCTTAGC+TGG + chr1.2:12378945-12378964 None:intergenic 60.0%
GAGGGTCAGGTGGAGATGGT+CGG - chr1.2:12379129-12379148 MS.gene021401:intron 60.0%
GCCCACGAGTCCTCTTGCTA+CGG + chr1.2:12378956-12378975 None:intergenic 60.0%
GCTCACGGGGTTCTTCATCC+TGG + chr1.2:12378872-12378891 None:intergenic 60.0%
GGAGGATGATTTAGCGGCCC+TGG - chr1.2:12378761-12378780 MS.gene021401:intron 60.0%
GTTGGAGCTACGGAGGCAGA+AGG - chr1.2:12379331-12379350 MS.gene021401:CDS 60.0%
! AAGGACAGTGACGGAGGGTC+AGG - chr1.2:12379116-12379135 MS.gene021401:intron 60.0%
! GGGCATGAAGGTGCGAAACC+AGG - chr1.2:12378851-12378870 MS.gene021401:intron 60.0%
! GGTAACGGTGGAGGAAGAGG+CGG + chr1.2:12378152-12378171 None:intergenic 60.0%
! TTAGGCCCGGTTCGCCATTG+TGG + chr1.2:12379185-12379204 None:intergenic 60.0%
!! GGCCGAGTCAAGGTTGGTGT+CGG + chr1.2:12378116-12378135 None:intergenic 60.0%
GACGGAGGGTCAGGTGGAGA+TGG - chr1.2:12379125-12379144 MS.gene021401:intron 65.0%
GACGGTAGGTAAGGTGGGGG+TGG + chr1.2:12379057-12379076 None:intergenic 65.0%
GCCCGTAGCAAGAGGACTCG+TGG - chr1.2:12378951-12378970 MS.gene021401:intron 65.0%
GGTCAGGTGGAGATGGTCGG+AGG - chr1.2:12379132-12379151 MS.gene021401:intron 65.0%
! GACAGTGACGGAGGGTCAGG+TGG - chr1.2:12379119-12379138 MS.gene021401:intron 65.0%
CTCGTGGGCCCCCTTGTGAC+TGG - chr1.2:12378967-12378986 MS.gene021401:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 12377986 12379484 12377986 ID=MS.gene021401
chr1.2 mRNA 12377986 12379484 12377986 ID=MS.gene021401.t1;Parent=MS.gene021401
chr1.2 exon 12379185 12379484 12379185 ID=MS.gene021401.t1.exon1;Parent=MS.gene021401.t1
chr1.2 CDS 12379185 12379484 12379185 ID=cds.MS.gene021401.t1;Parent=MS.gene021401.t1
chr1.2 exon 12377986 12378708 12377986 ID=MS.gene021401.t1.exon2;Parent=MS.gene021401.t1
chr1.2 CDS 12377986 12378708 12377986 ID=cds.MS.gene021401.t1;Parent=MS.gene021401.t1
Gene Sequence

>MS.gene021401

ATGGAAGGCACAACCAACAACATTTTCCAAACCACCTTTTCCTCCGACAACAACACTACCGACAATTTCATTGTTGAGGACCTCCTTAACCTCAACAATGACGTCGACGACGACGCTACCATCATTTCCGACACCAACCTTGACTCGGCCACAATCAACTCAACCGCCTCTTCCTCCACCGTTACCGTTGTCAATAGCGTTAGCTCGTCATCATTGTCCGGGTGCGACCCTAATGTCGTTCCTGATATTGGCTGTCAGAATTTTTCTGACAGCCATTTCTCCGGAGACCTGTGTGTTCCGGTATATTATATGTGTATATGCATTATCAATTATTATCTTTTTTTAAAAAATATATATAAAGCACGTAGACACTTCACATTTTCGTAACTCGTTTAATTTGACTTATTCTATTAGTTCCATGTAAATTTCTAACTCATACGTATAACATATAACATCACATTGCATTTGAAGATTTTGAACCCTTTTTTGCCAATAATTTCAGGAGAAAAAACAACTAGCTAGGCTAAATACAACAGAATGGGGCACATTTCACGGTTCGAAAACTAAATTTTATTGCAACATTTGTTTCAATTATTACCAAATTATTGAGTATCACAAAATAGTACACGTGAAAGCATTAGTACGACTATATGAACATAAAATGTGCATGCTTGATTAGTTATGTACAATGTAATATTATTATTACTACGTAGCAAATAATGTTTCAAGAGCATATATAGAGGAATAATTATTGTTTGTGTTGAAATTTGAAATAGGAGGATGATTTAGCGGCCCTGGACTGGATTTCCCATATTGATGAGGAATCGTTTTCAAGCGAGGATCTTCAAAAGATGCAACTGATATCGGGCATGAAGGTGCGAAACCAGGATGAAGAACCCCGTGAGCTTTCCCAACCCAACCGAAACAGTCCTATATTCAACAAGGAAGTTTTGGTTCCAGCTAAGGCCCGTAGCAAGAGGACTCGTGGGCCCCCTTGTGACTGGAGCTCACGTCTTCTTGTTTTGTCTCAAACAACACCGTCTTCTTCTGAGTCAGAACTCCTTATTCCCACCCCCACCTTACCTACCGTCACTGTTCCAAGGAAGCAGGCAAAGACTGCTCCAAGAAGAAAGGACAGTGACGGAGGGTCAGGTGGAGATGGTCGGAGGTGTCTGCATTGTATGACAGACAAGACACCACAATGGCGAACCGGGCCTAATGGCCCGAAAACATTATGCAACGCTTGTGGTGTAAGATACAAGTCGGGTCGATTGGTGCCTGAATACAGGCCTGCAGCTAGCCCTACATTTGTGCTGACCAAACACTCCAACTCGCATCGTAAAGTGTTGGAGCTACGGAGGCAGAAGGAAATGTTGCGGGCACACCAACACCAACAAAACCAGATTTTACAACATCAGAGTATGATGTTTGATATGTCCAACAATGATGATTACTTGATTCACCAACATATGGGACCTGATTTTAGGCAGATGATGTAG
Protein sequence

>MS.gene021401.t1

MEGTTNNIFQTTFSSDNNTTDNFIVEDLLNLNNDVDDDATIISDTNLDSATINSTASSSTVTVVNSVSSSSLSGCDPNVVPDIGCQNFSDSHFSGDLCVPEDDLAALDWISHIDEESFSSEDLQKMQLISGMKVRNQDEEPRELSQPNRNSPIFNKEVLVPAKARSKRTRGPPCDWSSRLLVLSQTTPSSSESELLIPTPTLPTVTVPRKQAKTAPRRKDSDGGSGGDGRRCLHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAHQHQQNQILQHQSMMFDMSNNDDYLIHQHMGPDFRQMM