AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021603

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 108 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACAATACCTTGCCTTCT+TGG 0.194452 1.4:-9530162 MS.gene021603:CDS
TCTTGGCTTGGTTCACCTTC+TGG 0.208371 1.4:-9530145 MS.gene021603:CDS
CCCCTCGCAACACCACAATT+TGG 0.211262 1.4:-9530091 MS.gene021603:CDS
TTGTTCACATGGGCGCCAAC+TGG 0.244584 1.4:+9530178 None:intergenic
TATAAGACATAAATCTTAAA+GGG 0.300674 1.4:+9529778 None:intergenic
AAGTCAAACACTTCGGGTTC+GGG 0.326066 1.4:-9530016 MS.gene021603:CDS
GAAATTTGGATGCCCTTGAT+AGG 0.340355 1.4:+9530222 None:intergenic
CCCTCGCAACACCACAATTT+GGG 0.344308 1.4:-9530090 MS.gene021603:CDS
GGTGTTGCGAGGGGTGAATT+TGG 0.357813 1.4:+9530100 None:intergenic
CAGGAAATTCTCTACTTATC+AGG 0.361888 1.4:-9530383 MS.gene021603:CDS
TTCGCCCTTCTCCAAGGCTT+TGG 0.364197 1.4:+9530486 None:intergenic
AAGTTAGCACTACGGAAATT+TGG 0.364201 1.4:+9530208 None:intergenic
AAAGTCAAACACTTCGGGTT+CGG 0.369088 1.4:-9530017 MS.gene021603:CDS
GAGGTTGGTGGTATTCCCTT+TGG 0.369855 1.4:+9530568 None:intergenic
AGGCTTTGGAAGTGGGCATT+GGG 0.371713 1.4:+9530500 None:intergenic
TTGGGCGGAAGCCAAGCCTT+AGG 0.373136 1.4:+9530518 None:intergenic
CTTCTCCAAGGCTTTGGAAG+TGG 0.377232 1.4:+9530492 None:intergenic
TGCTGCTGATGAACCTTTAC+CGG 0.384228 1.4:-9530443 MS.gene021603:CDS
AATACCTTGCCTTCTTGGCT+TGG 0.386051 1.4:-9530157 MS.gene021603:CDS
TTCTCTACTTATCAGGCTCT+TGG 0.389156 1.4:-9530376 MS.gene021603:CDS
AGAATTTCCATCGGAAATGC+TGG 0.407959 1.4:-9530655 MS.gene021603:CDS
TACTGGAGAAGGCATAATTC+AGG 0.408403 1.4:-9529888 MS.gene021603:CDS
CCACAAAAGTCAAACACTTC+GGG 0.409280 1.4:-9530022 MS.gene021603:CDS
GGTTCACCTTCTGGTGGCTA+TGG 0.410242 1.4:-9530136 MS.gene021603:CDS
TTCTCCAAGGCTTTGGAAGT+GGG 0.410767 1.4:+9530493 None:intergenic
GAACACGCTTATGACCGTTT+TGG 0.412218 1.4:+9530347 None:intergenic
AAGGCTTTGGAAGTGGGCAT+TGG 0.413114 1.4:+9530499 None:intergenic
TAGGGAGTAGGACTTGAAAA+TGG 0.414467 1.4:+9530241 None:intergenic
AAAACGGTCATAAGCGTGTT+CGG 0.415189 1.4:-9530345 MS.gene021603:CDS
GTAGGATCACGAGATAATAA+TGG 0.426831 1.4:+9529908 None:intergenic
TTATTATCTCGTGATCCTAC+TGG 0.438584 1.4:-9529905 MS.gene021603:CDS
TTCACGTCTTGCTCCGGTAA+AGG 0.446596 1.4:+9530430 None:intergenic
AAACGGTCATAAGCGTGTTC+GGG 0.452989 1.4:-9530344 MS.gene021603:CDS
TCAAGTCCTACTCCCTATCA+AGG 0.460041 1.4:-9530235 MS.gene021603:CDS
GATTAGCAGCTACGATCCTT+CGG 0.464322 1.4:+9530278 None:intergenic
TCACCTTCTGGTGGCTATGG+AGG 0.469395 1.4:-9530133 MS.gene021603:CDS
CACCTTCTGGTGGCTATGGA+GGG 0.473697 1.4:-9530132 MS.gene021603:CDS
AAACCTCAAGCGCAAAATGA+TGG 0.477017 1.4:-9530626 MS.gene021603:CDS
CCCAAATTGTGGTGTTGCGA+GGG 0.483551 1.4:+9530090 None:intergenic
TGGGCGGAAGCCAAGCCTTA+GGG 0.484232 1.4:+9530519 None:intergenic
GTTGATGATGAGGGCACATT+GGG 0.485254 1.4:+9529860 None:intergenic
AATTCCTTCACGTCTTGCTC+CGG 0.485955 1.4:+9530424 None:intergenic
TTCTCCGAGGTTGATTGAGT+TGG 0.486064 1.4:+9529818 None:intergenic
GCCAGAGTCAAAATCAGAAA+AGG 0.490448 1.4:-9530593 MS.gene021603:CDS
TGTTCACATGGGCGCCAACT+GGG 0.491409 1.4:+9530179 None:intergenic
GCGCAAAATGATGGAGGAGC+AGG 0.494153 1.4:-9530617 MS.gene021603:CDS
TTGAGGATTTGCTGACCCTA+AGG 0.499838 1.4:-9530534 MS.gene021603:CDS
GATTGAGTTGGTTCCTCTGA+GGG 0.507541 1.4:+9529830 None:intergenic
TTCCCTGTCAGTACTGTGAC+AGG 0.510555 1.4:-9530402 MS.gene021603:CDS
TCAAACTCCTCGATTGGCTG+AGG 0.513629 1.4:-9529975 MS.gene021603:CDS
GAAGGTGAACCAAGCCAAGA+AGG 0.514184 1.4:+9530148 None:intergenic
CACTTCCAAAGCCTTGGAGA+AGG 0.514520 1.4:-9530491 MS.gene021603:CDS
TCTACTTATCAGGCTCTTGG+AGG 0.515170 1.4:-9530373 MS.gene021603:CDS
GATTTGCTGACCCTAAGGCT+TGG 0.515203 1.4:-9530529 MS.gene021603:CDS
AAATTTGGATGCCCTTGATA+GGG 0.517754 1.4:+9530223 None:intergenic
AATGCCCACTTCCAAAGCCT+TGG 0.518064 1.4:-9530497 MS.gene021603:CDS
TCAACATCTGATTCAGAGGT+TGG 0.520729 1.4:+9530553 None:intergenic
AGCTAATCAAACTCCTCGAT+TGG 0.520876 1.4:-9529981 MS.gene021603:CDS
TCCACAAAAGTCAAACACTT+CGG 0.524677 1.4:-9530023 MS.gene021603:CDS
CTTGAAAATGGATGAGGGTA+TGG 0.526376 1.4:+9530253 None:intergenic
TCCCAAATTGTGGTGTTGCG+AGG 0.539071 1.4:+9530089 None:intergenic
GAATTTCCATCGGAAATGCT+GGG 0.539209 1.4:-9530654 MS.gene021603:CDS
TGGCTTGGTTCACCTTCTGG+TGG 0.546245 1.4:-9530142 MS.gene021603:CDS
GTAGGACTTGAAAATGGATG+AGG 0.549069 1.4:+9530247 None:intergenic
TGAATTATGCCTTCTCCAGT+AGG 0.553893 1.4:+9529890 None:intergenic
TTTCCTGTCACAGTACTGAC+AGG 0.555350 1.4:+9530399 None:intergenic
ACTTCCAAAGCCTTGGAGAA+GGG 0.557599 1.4:-9530490 MS.gene021603:CDS
AAAATCAGAAAAGGAGCCAA+AGG 0.571423 1.4:-9530584 MS.gene021603:CDS
GGATGCCCTTGATAGGGAGT+AGG 0.571516 1.4:+9530229 None:intergenic
CAAACTCCTCGATTGGCTGA+GGG 0.571646 1.4:-9529974 MS.gene021603:CDS
TGAAGGTTCGCCCTTCTCCA+AGG 0.573870 1.4:+9530480 None:intergenic
TCTCGTGATCCTACTGGAGA+AGG 0.573926 1.4:-9529899 MS.gene021603:CDS
GCTCTTGGAGGACACCAAAA+CGG 0.575138 1.4:-9530361 MS.gene021603:CDS
ACATCTGATTCAGAGGTTGG+TGG 0.575544 1.4:+9530556 None:intergenic
TAGGACTTGAAAATGGATGA+GGG 0.575804 1.4:+9530248 None:intergenic
ATCCTCAACATCTGATTCAG+AGG 0.577188 1.4:+9530549 None:intergenic
AAGGCAAGGTATTGTTCACA+TGG 0.578550 1.4:+9530167 None:intergenic
CTTTGGAAGTGGGCATTGGG+CGG 0.581292 1.4:+9530503 None:intergenic
AGTTGATGATGAGGGCACAT+TGG 0.583838 1.4:+9529859 None:intergenic
AAATCAGAAAAGGAGCCAAA+GGG 0.585544 1.4:-9530583 MS.gene021603:CDS
AACCTCTGAATCAGATGTTG+AGG 0.586720 1.4:-9530551 MS.gene021603:CDS
TTTGTCCCCAGCATTTCCGA+TGG 0.589355 1.4:+9530648 None:intergenic
AGTCAAACACTTCGGGTTCG+GGG 0.589712 1.4:-9530015 MS.gene021603:CDS
TGAACCAAGCCAAGAAGGCA+AGG 0.593315 1.4:+9530153 None:intergenic
AAATTAGTCATCCCAAATTG+TGG 0.600013 1.4:+9530079 None:intergenic
CAAGTCCTACTCCCTATCAA+GGG 0.609231 1.4:-9530234 MS.gene021603:CDS
ATAAGACATAAATCTTAAAG+GGG 0.619171 1.4:+9529779 None:intergenic
ATGAGAATGAATTTGATCGA+TGG 0.622201 1.4:+9529937 None:intergenic
TGATTGAGTTGGTTCCTCTG+AGG 0.624213 1.4:+9529829 None:intergenic
AAGAGATAGATTTACTCCGA+AGG 0.627965 1.4:-9530294 MS.gene021603:CDS
GCTAACTTGCACAACCCAGT+TGG 0.635608 1.4:-9530193 MS.gene021603:CDS
ATCCCTCCATAGCCACCAGA+AGG 0.636300 1.4:+9530130 None:intergenic
TCTGCACCCTCAGCCAATCG+AGG 0.645887 1.4:+9529968 None:intergenic
TTTACCGGAGCAAGACGTGA+AGG 0.645972 1.4:-9530428 MS.gene021603:CDS
TAAGACATAAATCTTAAAGG+GGG 0.653670 1.4:+9529780 None:intergenic
CCTCAAGCGCAAAATGATGG+AGG 0.656497 1.4:-9530623 MS.gene021603:CDS
ATGGCTGAGAGAATTTCCAT+CGG 0.660705 1.4:-9530664 MS.gene021603:CDS
GCATTCTGAGATGAACGTGA+AGG 0.671407 1.4:+9530463 None:intergenic
CCAAATTGTGGTGTTGCGAG+GGG 0.675409 1.4:+9530091 None:intergenic
GGAACCAACTCAATCAACCT+CGG 0.676925 1.4:-9529822 MS.gene021603:CDS
AATTTCCATCGGAAATGCTG+GGG 0.677054 1.4:-9530653 MS.gene021603:CDS
GGTTGTGCAAGTTAGCACTA+CGG 0.678534 1.4:+9530200 None:intergenic
ATCAACTCAATCACCCTCAG+AGG 0.680896 1.4:-9529843 MS.gene021603:CDS
GGGTGATTGAGTTGATGATG+AGG 0.681787 1.4:+9529850 None:intergenic
GGTGATTGAGTTGATGATGA+GGG 0.690927 1.4:+9529851 None:intergenic
ATTCAAGTTGAGTTTCTCCG+AGG 0.691771 1.4:+9529805 None:intergenic
AGGCAAGGTATTGTTCACAT+GGG 0.701207 1.4:+9530168 None:intergenic
TTCCTGTCACAGTACTGACA+GGG 0.704758 1.4:+9530400 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTGGGATGACTAATTTT+TGG - chr1.4:9530382-9530401 MS.gene021603:CDS 25.0%
AAATTAGTCATCCCAAATTG+TGG + chr1.4:9530381-9530400 None:intergenic 30.0%
ATGAGAATGAATTTGATCGA+TGG + chr1.4:9530523-9530542 None:intergenic 30.0%
TCAAAAAACAGGAAGACAAA+AGG - chr1.4:9530139-9530158 MS.gene021603:CDS 30.0%
AAAATCAGAAAAGGAGCCAA+AGG - chr1.4:9529873-9529892 MS.gene021603:CDS 35.0%
AAATCAGAAAAGGAGCCAAA+GGG - chr1.4:9529874-9529893 MS.gene021603:CDS 35.0%
AAATTTGGATGCCCTTGATA+GGG + chr1.4:9530237-9530256 None:intergenic 35.0%
AAGAGATAGATTTACTCCGA+AGG - chr1.4:9530163-9530182 MS.gene021603:CDS 35.0%
AAGTTAGCACTACGGAAATT+TGG + chr1.4:9530252-9530271 None:intergenic 35.0%
CAGGAAATTCTCTACTTATC+AGG - chr1.4:9530074-9530093 MS.gene021603:CDS 35.0%
GTAGGATCACGAGATAATAA+TGG + chr1.4:9530552-9530571 None:intergenic 35.0%
TAGGACTTGAAAATGGATGA+GGG + chr1.4:9530212-9530231 None:intergenic 35.0%
TCCACAAAAGTCAAACACTT+CGG - chr1.4:9530434-9530453 MS.gene021603:CDS 35.0%
TTATTATCTCGTGATCCTAC+TGG - chr1.4:9530552-9530571 MS.gene021603:CDS 35.0%
!! GTGTTTGACTTTTGTGGAAT+TGG + chr1.4:9530432-9530451 None:intergenic 35.0%
!!! ATGACTAATTTTTGGCGTGT+AGG - chr1.4:9530390-9530409 MS.gene021603:CDS 35.0%
!!! TCCTTTTCTGATTTTGACTC+TGG + chr1.4:9529868-9529887 None:intergenic 35.0%
AAAACGGTCATAAGCGTGTT+CGG - chr1.4:9530112-9530131 MS.gene021603:CDS 40.0%
AAACCTCAAGCGCAAAATGA+TGG - chr1.4:9529831-9529850 MS.gene021603:CDS 40.0%
AACCTCTGAATCAGATGTTG+AGG - chr1.4:9529906-9529925 MS.gene021603:CDS 40.0%
AATTTCCATCGGAAATGCTG+GGG - chr1.4:9529804-9529823 MS.gene021603:CDS 40.0%
AGAATTTCCATCGGAAATGC+TGG - chr1.4:9529802-9529821 MS.gene021603:CDS 40.0%
AGCTAATCAAACTCCTCGAT+TGG - chr1.4:9530476-9530495 MS.gene021603:CDS 40.0%
ATCCTCAACATCTGATTCAG+AGG + chr1.4:9529911-9529930 None:intergenic 40.0%
ATGGCTGAGAGAATTTCCAT+CGG - chr1.4:9529793-9529812 MS.gene021603:CDS 40.0%
CCACAAAAGTCAAACACTTC+GGG - chr1.4:9530435-9530454 MS.gene021603:CDS 40.0%
CTTGAAAATGGATGAGGGTA+TGG + chr1.4:9530207-9530226 None:intergenic 40.0%
GAAATTTGGATGCCCTTGAT+AGG + chr1.4:9530238-9530257 None:intergenic 40.0%
GAATTTCCATCGGAAATGCT+GGG - chr1.4:9529803-9529822 MS.gene021603:CDS 40.0%
GCCAGAGTCAAAATCAGAAA+AGG - chr1.4:9529864-9529883 MS.gene021603:CDS 40.0%
GTAGGACTTGAAAATGGATG+AGG + chr1.4:9530213-9530232 None:intergenic 40.0%
TAGGGAGTAGGACTTGAAAA+TGG + chr1.4:9530219-9530238 None:intergenic 40.0%
TCAACATCTGATTCAGAGGT+TGG + chr1.4:9529907-9529926 None:intergenic 40.0%
TGAACAATACCTTGCCTTCT+TGG - chr1.4:9530295-9530314 MS.gene021603:CDS 40.0%
TGAATTATGCCTTCTCCAGT+AGG + chr1.4:9530570-9530589 None:intergenic 40.0%
TGTTCGGGTCTTCAAAAAAC+AGG - chr1.4:9530128-9530147 MS.gene021603:CDS 40.0%
TTCTCTACTTATCAGGCTCT+TGG - chr1.4:9530081-9530100 MS.gene021603:CDS 40.0%
! AAAGTCAAACACTTCGGGTT+CGG - chr1.4:9530440-9530459 MS.gene021603:CDS 40.0%
! TACTGGAGAAGGCATAATTC+AGG - chr1.4:9530569-9530588 MS.gene021603:CDS 40.0%
!! AAGGCAAGGTATTGTTCACA+TGG + chr1.4:9530293-9530312 None:intergenic 40.0%
!! AGGCAAGGTATTGTTCACAT+GGG + chr1.4:9530292-9530311 None:intergenic 40.0%
!! ATTCAAGTTGAGTTTCTCCG+AGG + chr1.4:9530655-9530674 None:intergenic 40.0%
!! GGTGATTGAGTTGATGATGA+GGG + chr1.4:9530609-9530628 None:intergenic 40.0%
AAACGGTCATAAGCGTGTTC+GGG - chr1.4:9530113-9530132 MS.gene021603:CDS 45.0%
AATACCTTGCCTTCTTGGCT+TGG - chr1.4:9530300-9530319 MS.gene021603:CDS 45.0%
AATTCCTTCACGTCTTGCTC+CGG + chr1.4:9530036-9530055 None:intergenic 45.0%
ACATCTGATTCAGAGGTTGG+TGG + chr1.4:9529904-9529923 None:intergenic 45.0%
ACTTCCAAAGCCTTGGAGAA+GGG - chr1.4:9529967-9529986 MS.gene021603:CDS 45.0%
ATCAACTCAATCACCCTCAG+AGG - chr1.4:9530614-9530633 MS.gene021603:CDS 45.0%
CAAGTCCTACTCCCTATCAA+GGG - chr1.4:9530223-9530242 MS.gene021603:CDS 45.0%
GATTAGCAGCTACGATCCTT+CGG + chr1.4:9530182-9530201 None:intergenic 45.0%
GGAACCAACTCAATCAACCT+CGG - chr1.4:9530635-9530654 MS.gene021603:CDS 45.0%
GGTTGTGCAAGTTAGCACTA+CGG + chr1.4:9530260-9530279 None:intergenic 45.0%
TCAAGTCCTACTCCCTATCA+AGG - chr1.4:9530222-9530241 MS.gene021603:CDS 45.0%
TCTACTTATCAGGCTCTTGG+AGG - chr1.4:9530084-9530103 MS.gene021603:CDS 45.0%
TGCTGCTGATGAACCTTTAC+CGG - chr1.4:9530014-9530033 MS.gene021603:CDS 45.0%
! AAGTCAAACACTTCGGGTTC+GGG - chr1.4:9530441-9530460 MS.gene021603:CDS 45.0%
! GAACACGCTTATGACCGTTT+TGG + chr1.4:9530113-9530132 None:intergenic 45.0%
! TTCTCCGAGGTTGATTGAGT+TGG + chr1.4:9530642-9530661 None:intergenic 45.0%
!! AGTTGATGATGAGGGCACAT+TGG + chr1.4:9530601-9530620 None:intergenic 45.0%
!! CCCGAAGTGTTTGACTTTTG+TGG + chr1.4:9530438-9530457 None:intergenic 45.0%
!! GATTGAGTTGGTTCCTCTGA+GGG + chr1.4:9530630-9530649 None:intergenic 45.0%
!! GCATTCTGAGATGAACGTGA+AGG + chr1.4:9529997-9530016 None:intergenic 45.0%
!! GGGTGATTGAGTTGATGATG+AGG + chr1.4:9530610-9530629 None:intergenic 45.0%
!! GTTGATGATGAGGGCACATT+GGG + chr1.4:9530600-9530619 None:intergenic 45.0%
!! TGATTGAGTTGGTTCCTCTG+AGG + chr1.4:9530631-9530650 None:intergenic 45.0%
!! TTCCTGTCACAGTACTGACA+GGG + chr1.4:9530060-9530079 None:intergenic 45.0%
!! TTCTCCAAGGCTTTGGAAGT+GGG + chr1.4:9529967-9529986 None:intergenic 45.0%
!! TTGAGGATTTGCTGACCCTA+AGG - chr1.4:9529923-9529942 MS.gene021603:CDS 45.0%
!! TTTCCTGTCACAGTACTGAC+AGG + chr1.4:9530061-9530080 None:intergenic 45.0%
AATGCCCACTTCCAAAGCCT+TGG - chr1.4:9529960-9529979 MS.gene021603:CDS 50.0%
CACTTCCAAAGCCTTGGAGA+AGG - chr1.4:9529966-9529985 MS.gene021603:CDS 50.0%
CCCTCGCAACACCACAATTT+GGG - chr1.4:9530367-9530386 MS.gene021603:CDS 50.0%
CCTCAAGCGCAAAATGATGG+AGG - chr1.4:9529834-9529853 MS.gene021603:CDS 50.0%
GAAGGTGAACCAAGCCAAGA+AGG + chr1.4:9530312-9530331 None:intergenic 50.0%
GCTCTTGGAGGACACCAAAA+CGG - chr1.4:9530096-9530115 MS.gene021603:CDS 50.0%
TCTCGTGATCCTACTGGAGA+AGG - chr1.4:9530558-9530577 MS.gene021603:CDS 50.0%
TGAACCAAGCCAAGAAGGCA+AGG + chr1.4:9530307-9530326 None:intergenic 50.0%
TTCACGTCTTGCTCCGGTAA+AGG + chr1.4:9530030-9530049 None:intergenic 50.0%
TTCCCTGTCAGTACTGTGAC+AGG - chr1.4:9530055-9530074 MS.gene021603:CDS 50.0%
TTTACCGGAGCAAGACGTGA+AGG - chr1.4:9530029-9530048 MS.gene021603:CDS 50.0%
TTTGTCCCCAGCATTTCCGA+TGG + chr1.4:9529812-9529831 None:intergenic 50.0%
! AGTCAAACACTTCGGGTTCG+GGG - chr1.4:9530442-9530461 MS.gene021603:CDS 50.0%
! CAAACTCCTCGATTGGCTGA+GGG - chr1.4:9530483-9530502 MS.gene021603:CDS 50.0%
! CCTCCATCATTTTGCGCTTG+AGG + chr1.4:9529837-9529856 None:intergenic 50.0%
! GCTAACTTGCACAACCCAGT+TGG - chr1.4:9530264-9530283 MS.gene021603:CDS 50.0%
! TCAAACTCCTCGATTGGCTG+AGG - chr1.4:9530482-9530501 MS.gene021603:CDS 50.0%
!! AAGGCTTTGGAAGTGGGCAT+TGG + chr1.4:9529961-9529980 None:intergenic 50.0%
!! AGGCTTTGGAAGTGGGCATT+GGG + chr1.4:9529960-9529979 None:intergenic 50.0%
!! CCAAATTGTGGTGTTGCGAG+GGG + chr1.4:9530369-9530388 None:intergenic 50.0%
!! CCCAAATTGTGGTGTTGCGA+GGG + chr1.4:9530370-9530389 None:intergenic 50.0%
!! CTTCTCCAAGGCTTTGGAAG+TGG + chr1.4:9529968-9529987 None:intergenic 50.0%
!! GAGGTTGGTGGTATTCCCTT+TGG + chr1.4:9529892-9529911 None:intergenic 50.0%
!! GATTTGCTGACCCTAAGGCT+TGG - chr1.4:9529928-9529947 MS.gene021603:CDS 50.0%
!! TCCCAAATTGTGGTGTTGCG+AGG + chr1.4:9530371-9530390 None:intergenic 50.0%
!! TCTTGGCTTGGTTCACCTTC+TGG - chr1.4:9530312-9530331 MS.gene021603:CDS 50.0%
ATCCCTCCATAGCCACCAGA+AGG + chr1.4:9530330-9530349 None:intergenic 55.0%
CACCTTCTGGTGGCTATGGA+GGG - chr1.4:9530325-9530344 MS.gene021603:CDS 55.0%
CCCCTCGCAACACCACAATT+TGG - chr1.4:9530366-9530385 MS.gene021603:CDS 55.0%
GGATGCCCTTGATAGGGAGT+AGG + chr1.4:9530231-9530250 None:intergenic 55.0%
GGTTCACCTTCTGGTGGCTA+TGG - chr1.4:9530321-9530340 MS.gene021603:CDS 55.0%
TCACCTTCTGGTGGCTATGG+AGG - chr1.4:9530324-9530343 MS.gene021603:CDS 55.0%
TGAAGGTTCGCCCTTCTCCA+AGG + chr1.4:9529980-9529999 None:intergenic 55.0%
TGTTCACATGGGCGCCAACT+GGG + chr1.4:9530281-9530300 None:intergenic 55.0%
TTCGCCCTTCTCCAAGGCTT+TGG + chr1.4:9529974-9529993 None:intergenic 55.0%
TTGTTCACATGGGCGCCAAC+TGG + chr1.4:9530282-9530301 None:intergenic 55.0%
! GCGCAAAATGATGGAGGAGC+AGG - chr1.4:9529840-9529859 MS.gene021603:CDS 55.0%
! GGTGTTGCGAGGGGTGAATT+TGG + chr1.4:9530360-9530379 None:intergenic 55.0%
!! CTTTGGAAGTGGGCATTGGG+CGG + chr1.4:9529957-9529976 None:intergenic 55.0%
!! TGGCTTGGTTCACCTTCTGG+TGG - chr1.4:9530315-9530334 MS.gene021603:CDS 55.0%
TCTGCACCCTCAGCCAATCG+AGG + chr1.4:9530492-9530511 None:intergenic 60.0%
TGGGCGGAAGCCAAGCCTTA+GGG + chr1.4:9529941-9529960 None:intergenic 60.0%
TTGGGCGGAAGCCAAGCCTT+AGG + chr1.4:9529942-9529961 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 9529793 9530686 9529793 ID=MS.gene021603
chr1.4 mRNA 9529793 9530686 9529793 ID=MS.gene021603.t1;Parent=MS.gene021603
chr1.4 exon 9529793 9530686 9529793 ID=MS.gene021603.t1.exon1;Parent=MS.gene021603.t1
chr1.4 CDS 9529793 9530686 9529793 ID=cds.MS.gene021603.t1;Parent=MS.gene021603.t1
Gene Sequence

>MS.gene021603

ATGGCTGAGAGAATTTCCATCGGAAATGCTGGGGACAAAAACCTCAAGCGCAAAATGATGGAGGAGCAGGAGCCAGAGTCAAAATCAGAAAAGGAGCCAAAGGGAATACCACCAACCTCTGAATCAGATGTTGAGGATTTGCTGACCCTAAGGCTTGGCTTCCGCCCAATGCCCACTTCCAAAGCCTTGGAGAAGGGCGAACCTTCACGTTCATCTCAGAATGCTGCTGATGAACCTTTACCGGAGCAAGACGTGAAGGAATTTCCCTGTCAGTACTGTGACAGGAAATTCTCTACTTATCAGGCTCTTGGAGGACACCAAAACGGTCATAAGCGTGTTCGGGTCTTCAAAAAACAGGAAGACAAAAGGAAAGAGATAGATTTACTCCGAAGGATCGTAGCTGCTAATCAACCATACCCTCATCCATTTTCAAGTCCTACTCCCTATCAAGGGCATCCAAATTTCCGTAGTGCTAACTTGCACAACCCAGTTGGCGCCCATGTGAACAATACCTTGCCTTCTTGGCTTGGTTCACCTTCTGGTGGCTATGGAGGGATGCATATGCCAAATTCACCCCTCGCAACACCACAATTTGGGATGACTAATTTTTGGCGTGTAGGTCAAAATGCTGAATTGCCAATTCCACAAAAGTCAAACACTTCGGGTTCGGGGCTTTTTGCTCAAGCTAATCAAACTCCTCGATTGGCTGAGGGTGCAGAGAGAACTTCCATCGATCAAATTCATTCTCATGCTCTTCCATTATTATCTCGTGATCCTACTGGAGAAGGCATAATTCAGGCAAATCCCAATGTGCCCTCATCATCAACTCAATCACCCTCAGAGGAACCAACTCAATCAACCTCGGAGAAACTCAACTTGAATCTCCCCCTTTAA
Protein sequence

>MS.gene021603.t1

MAERISIGNAGDKNLKRKMMEEQEPESKSEKEPKGIPPTSESDVEDLLTLRLGFRPMPTSKALEKGEPSRSSQNAADEPLPEQDVKEFPCQYCDRKFSTYQALGGHQNGHKRVRVFKKQEDKRKEIDLLRRIVAANQPYPHPFSSPTPYQGHPNFRSANLHNPVGAHVNNTLPSWLGSPSGGYGGMHMPNSPLATPQFGMTNFWRVGQNAELPIPQKSNTSGSGLFAQANQTPRLAEGAERTSIDQIHSHALPLLSRDPTGEGIIQANPNVPSSSTQSPSEEPTQSTSEKLNLNLPL