AlfalfaGEDB | MS.gene021610

M. sativa cultivar XinJiangDaYe / MS.gene021610

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005509 GO:0005524 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016021 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030246 GO:0030247 GO:0030554 GO:0031224 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0071704 GO:0097159 GO:0097367 GO:0110165 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07645.18 PF07714.20 PF12947.10 PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021610.t1	KEH39807.1	90	699	62	3	1	694	1	696	0.00E+00	1281.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021610.t1	Q9LMN7	46.2	718	332	20	1	694	3	690	1.4e-159	564.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021610.t1	A0A072VDE9	90.0	699	62	3	1	694	1	696	0.0e+00	1281.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene021610.t1	MTR_1g010220	89.986	699	62	3	1	694	1	696	1291
MS.gene021610.t1	MTR_1g027570	63.324	698	230	12	4	694	15	693	869
MS.gene021610.t1	MTR_1g027580	62.123	697	242	10	4	694	13	693	862
MS.gene021610.t1	MTR_1g027660	63.314	676	221	12	25	694	16	670	849
MS.gene021610.t1	MTR_1g027490	61.686	676	241	10	25	694	15	678	823
MS.gene021610.t1	MTR_1g027640	59.429	700	259	12	6	694	13	698	817
MS.gene021610.t1	MTR_1g027600	59.885	698	259	12	4	694	13	696	813
MS.gene021610.t1	MTR_1g010260	59.444	720	219	21	2	694	8	681	775
MS.gene021610.t1	MTR_1g010240	52.111	687	183	22	28	694	35	595	608
MS.gene021610.t1	MTR_3g088775	47.050	695	326	15	20	691	46	721	607

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021610.t1	AT1G21230	46.518	718	330	21	1	694	3	690	0.0	574
MS.gene021610.t1	AT1G21270	45.557	709	340	18	7	694	3	686	0.0	566
MS.gene021610.t1	AT1G21240	44.538	714	350	16	4	694	7	697	0.0	556
MS.gene021610.t1	AT1G21250	44.648	710	347	18	4	694	9	691	0.0	545
MS.gene021610.t1	AT1G21210	44.556	698	333	19	23	694	23	692	0.0	543
MS.gene021610.t1	AT1G16130	39.180	707	380	19	3	687	12	690	1.19e-154	466
MS.gene021610.t1	AT1G16120	39.161	715	382	18	4	687	11	703	1.57e-147	447
MS.gene021610.t1	AT1G16260	38.913	699	369	18	4	687	9	664	5.25e-144	437
MS.gene021610.t1	AT1G16260	38.913	699	369	18	4	687	9	664	5.25e-144	437
MS.gene021610.t1	AT1G16260	38.770	699	361	17	4	687	9	655	7.46e-144	437

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Find 139 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGACGTCTATAGCTT+TGG	0.412009	1.4:+9477980	MS.gene021610:CDS
AAACAAACAAGAGATCAAGA+AGG	0.606429	1.4:+9478150	MS.gene021610:CDS
AAATCATACACCATGTTACA+TGG	0.474621	1.4:+9475891	MS.gene021610:CDS
AACAACTCAAAATTAATCCG+TGG	0.642055	1.4:+9475940	MS.gene021610:CDS
AACAGCCCAATTAAGAACTA+CGG	0.531514	1.4:-9476445	None:intergenic
AAGACCAAGCATGAAGGAAG+TGG	0.554397	1.4:+9478216	MS.gene021610:CDS
AAGCATGAAGGAAGTGGCTA+TGG	0.511787	1.4:+9478222	MS.gene021610:CDS
AAGTTATTCAAGATGGTATG+TGG	0.467150	1.4:+9478119	MS.gene021610:CDS
AAGTTCTTTAAGCAGAATGG+AGG	0.586504	1.4:+9477320	MS.gene021610:CDS
AATAACAATGGAAAATGCAC+AGG	0.540870	1.4:+9476246	MS.gene021610:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAACAAGAGATCAAGA+AGG	+	chr1.4:9478150-9478169	MS.gene021610:CDS	30.0%
AAATCATACACCATGTTACA+TGG	+	chr1.4:9475891-9475910	MS.gene021610:CDS	30.0%
AACAACTCAAAATTAATCCG+TGG	+	chr1.4:9475940-9475959	MS.gene021610:CDS	30.0%
AACTGCAAAAACAAAAACAG+TGG	-	chr1.4:9476650-9476669	None:intergenic	30.0%
AAGTTATTCAAGATGGTATG+TGG	+	chr1.4:9478119-9478138	MS.gene021610:CDS	30.0%
AATAACAATGGAAAATGCAC+AGG	+	chr1.4:9476246-9476265	MS.gene021610:CDS	30.0%
AATTCATTTCCATTTGACCT+TGG	-	chr1.4:9475996-9476015	None:intergenic	30.0%
ACAAACTCATAAACCAACAA+AGG	-	chr1.4:9477647-9477666	None:intergenic	30.0%
AGCAAATTGTATGAACACTT+TGG	+	chr1.4:9476975-9476994	MS.gene021610:CDS	30.0%
ATAAGCTATATTCGCTTCTT+CGG	-	chr1.4:9476067-9476086	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	9475745	9478291	9475745	ID=MS.gene021610
chr1.4	mRNA	9475745	9478291	9475745	ID=MS.gene021610.t1;Parent=MS.gene021610
chr1.4	exon	9475745	9476621	9475745	ID=MS.gene021610.t1.exon1;Parent=MS.gene021610.t1
chr1.4	CDS	9475745	9476621	9475745	ID=cds.MS.gene021610.t1;Parent=MS.gene021610.t1
chr1.4	exon	9476932	9477096	9476932	ID=MS.gene021610.t1.exon2;Parent=MS.gene021610.t1
chr1.4	CDS	9476932	9477096	9476932	ID=cds.MS.gene021610.t1;Parent=MS.gene021610.t1
chr1.4	exon	9477243	9478291	9477243	ID=MS.gene021610.t1.exon3;Parent=MS.gene021610.t1
chr1.4	CDS	9477243	9478291	9477243	ID=cds.MS.gene021610.t1;Parent=MS.gene021610.t1

Gene Sequence

>MS.gene021610

ATGCATCCATTGATAATTGTTTCATTAGCACTTTTGATAGAAACAGTTGCATATGATCAACCTCAACAAGTCTTACCTGGCTGCAGTTACACTTGTGGAGATGTAACAATTCCATATCCATTTGGCATAGGAAATTCAACAGCACAAAATCATACACCATGTTACATGGATTCAAAATTTGAACTCACTTGTGTAAACAACTCAAAATTAATCCGTGGTACGAATTTAGAAGTCCTAGATATAAATCCCCAAGGTCAAATGGAAATGAATTTTTTCGTCTCACATCTCTGTACGAATAGTAGTAGTAGTAGTAATAATACCGAAGAAGCGAATATAGCTTATCTCAGAGTTTCTCCTCACACAATTTCAAGTACGGAAAACAAATTCATAACAGTTGGTTGTGACAGTTACGGATATCTCAACAGTAATTTCACAGGTGCCACTTATTCAACAGGGTGCTTAACAAGATGTTATGATTATGATCCTAAAATAGTAATTGGGAATAACAATGGAAAATGCACAGGATTAGGGTGTTGCCAAGTGGATATTCCTTCTAGTATGAAAAATATCACTATTGAAGCATTTAAATTCCCAACTTCTACGCTATCTCAGGAAAATTGTAGCTATTCCTTTATTGCAAAACAAGGATCCTATAAATTTTCTGTAGACCATATAGATAATCTACCATATGAAACTTTCCCCGTAGTTCTTAATTGGGCTGTTGCAAATGAATCATGTCAAATAGCACAAACTACAGATAACTATGCCTGCAAGGAAAATAGTAAATGTGTCGATGACGAACCAGATTATGATGGTTACAGATGCAAGTGTTTAGAAGGTTTTGAAGGAAATCCGTACCTTCCTGGAGGCTGCACAGGTAACAAACAAAGCATAATATCGTACCACTGTTTTTGTTTTTGCAGTTTAATTAATTGATTGTGCTTCATATTTTCAATGTTTTATTGAACTTGGTTCCTCTTAATTGAGTCATTTTAAAAAGTGGTTGACTATACAAAGTTGACATAAGAGTGGTTGATTACATTTAATTTTTAGGCAGTCATTCATCAGGGTGCAAGCTAGATTTATTATCATACACACTAGATGTTGAATTTCATTTTTGTATCAAATCAATGTACGAATCACATGTATAGTAAGATACTAATGACAATGGTTTTATGGTTTTTCAGACATTGACGAATGTGCCACAAAAACTCATGTATGCAAAAATAAAGCAAATTGTATGAACACTTTGGGGAATCACACTTGTTTCTGTCCCAAGGGGCAAACCGGAGATGGAACAAAGGAAGGAGGATGCCAACCAGTTCATCTAAATGCAACTCAGATTGTCCTCGGTAAGCAACTAAGCATGCCTAATTGTATTTTAAGTTAATTTTTTTTTTATTATCAAATATTATGAGTGTTCATTAAGTATATATATGCTACTGATATTAGTCTGGGGAACAATCCAAAAATTGGGTTCAATATATTTTGAATACAGGAGCAGGAGCAGTACTATTTGTGGGGATAGTTTTCTTCATAATATACCAAAAAAGGAAATTTACCAAATTAAAAGAGAAGTTCTTTAAGCAGAATGGAGGTTCTATTTTGGAACAAAAACTTCTTCAAAGAAAAGACTCGTCTCAAATAGCTCACATTTTCAAAGAAAATGAACTAAAGAAAGCCACTAACAACTTTGATGAGAGCTTAATCATAGGTAGAGGAGGTTTTGGTACAGTTTTCAAAGGGGAACTTGATGATAATAGAATTGTTGCTATCAAAAAGTCCAAAACTATAGACGAAAGCCAAATTGAACAATTCATTAATGAGGTGGATGTTGTCTCTCAAATAAATCATAGGAATGTGGTCAAACTCTTAGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAGTTTGTTAGCAATGGTACTCTTTCTGAATTTATACACACACAAGGTGAGACGAACGATCTAACTTGGATAACTCGTCTTAGGATAGCTGCAGAGGTAGCTGGAGCTCTGTCATATCTGCATTCAGCTGCCTCAATACCAATTATCCATAGAGATGTCAAGAGTGCTAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCAGATTTTGGAGCTTCAAGATTGATTCCACTTGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGATCCAGAGTATATGCTAACAAGCCAATTGACTGAAAAAAGTGACGTCTATAGCTTTGGAGTAGTTCTTGTGGAGTTGCTAACGGGGGAGAAACCTTTTTGTTTTGGTAGGTCGGAAGAGAGAAGAAGTCTTGCTATGCATTTTCTATCTTGCTTGAAAAATGATAATGTGTTTGAAGTTATTCAAGATGGTATGTGGAATGAAGAAAACAAACAAGAGATCAAGAAGGTAGCTGTTCTTGCGGCGAACTGCTTGAGACTTATAGGGGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAGCACTCTTGGAGACCATAA

Protein sequence

>MS.gene021610.t1

MHPLIIVSLALLIETVAYDQPQQVLPGCSYTCGDVTIPYPFGIGNSTAQNHTPCYMDSKFELTCVNNSKLIRGTNLEVLDINPQGQMEMNFFVSHLCTNSSSSSNNTEEANIAYLRVSPHTISSTENKFITVGCDSYGYLNSNFTGATYSTGCLTRCYDYDPKIVIGNNNGKCTGLGCCQVDIPSSMKNITIEAFKFPTSTLSQENCSYSFIAKQGSYKFSVDHIDNLPYETFPVVLNWAVANESCQIAQTTDNYACKENSKCVDDEPDYDGYRCKCLEGFEGNPYLPGGCTDIDECATKTHVCKNKANCMNTLGNHTCFCPKGQTGDGTKEGGCQPVHLNATQIVLGAGAVLFVGIVFFIIYQKRKFTKLKEKFFKQNGGSILEQKLLQRKDSSQIAHIFKENELKKATNNFDESLIIGRGGFGTVFKGELDDNRIVAIKKSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSEFIHTQGETNDLTWITRLRIAAEVAGALSYLHSAASIPIIHRDVKSANILLDGTNTAKVSDFGASRLIPLDQTEVATMVQGTIGYLDPEYMLTSQLTEKSDVYSFGVVLVELLTGEKPFCFGRSEERRSLAMHFLSCLKNDNVFEVIQDGMWNEENKQEIKKVAVLAANCLRLIGEERPSMKEVAMELEGMRLMDKHSWRP