Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021686.t1 | XP_003621170.1 | 95.2 | 271 | 13 | 0 | 1 | 271 | 1 | 271 | 2.40E-130 | 474.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021686.t1 | Q8LAT0 | 49.1 | 269 | 112 | 11 | 1 | 264 | 16 | 264 | 1.0e-36 | 155.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021686.t1 | G7KZX6 | 95.2 | 271 | 13 | 0 | 1 | 271 | 1 | 271 | 1.8e-130 | 474.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene021686.t1 | TF | HB-HD-ZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021686.t1 | MTR_7g010020 | 96.691 | 272 | 9 | 0 | 1 | 272 | 1 | 272 | 0.0 | 546 |
| MS.gene021686.t1 | MTR_6g011610 | 60.825 | 291 | 73 | 10 | 1 | 272 | 1 | 269 | 3.32e-108 | 314 |
| MS.gene021686.t1 | MTR_6g011610 | 58.741 | 286 | 68 | 10 | 1 | 272 | 1 | 250 | 3.63e-99 | 291 |
| MS.gene021686.t1 | MTR_8g468210 | 52.113 | 284 | 114 | 9 | 1 | 271 | 1 | 275 | 2.62e-77 | 236 |
| MS.gene021686.t1 | MTR_5g039000 | 49.645 | 282 | 122 | 8 | 1 | 271 | 4 | 276 | 6.87e-70 | 217 |
| MS.gene021686.t1 | MTR_3g080100 | 57.407 | 108 | 43 | 1 | 71 | 175 | 8 | 115 | 5.10e-33 | 120 |
| MS.gene021686.t1 | MTR_5g038280 | 59.459 | 111 | 43 | 1 | 65 | 175 | 74 | 182 | 6.15e-33 | 123 |
| MS.gene021686.t1 | MTR_3g080100 | 57.407 | 108 | 43 | 1 | 71 | 175 | 47 | 154 | 7.45e-33 | 121 |
| MS.gene021686.t1 | MTR_4g107650 | 49.630 | 135 | 60 | 2 | 48 | 175 | 57 | 190 | 1.55e-31 | 119 |
| MS.gene021686.t1 | MTR_6g007647 | 58.416 | 101 | 41 | 1 | 75 | 175 | 29 | 128 | 1.53e-30 | 115 |
| MS.gene021686.t1 | MTR_6g007647 | 58.416 | 101 | 41 | 1 | 75 | 175 | 63 | 162 | 4.19e-30 | 114 |
| MS.gene021686.t1 | MTR_3g086790 | 59.794 | 97 | 39 | 0 | 79 | 175 | 59 | 155 | 4.55e-30 | 115 |
| MS.gene021686.t1 | MTR_8g089895 | 57.732 | 97 | 41 | 0 | 79 | 175 | 53 | 149 | 5.16e-29 | 112 |
| MS.gene021686.t1 | MTR_7g103340 | 47.692 | 130 | 64 | 2 | 67 | 196 | 51 | 176 | 1.82e-28 | 108 |
| MS.gene021686.t1 | MTR_8g469430 | 58.333 | 96 | 40 | 0 | 80 | 175 | 89 | 184 | 1.12e-26 | 105 |
| MS.gene021686.t1 | MTR_1g061660 | 45.985 | 137 | 58 | 3 | 47 | 174 | 17 | 146 | 1.48e-24 | 98.6 |
| MS.gene021686.t1 | MTR_4g100550 | 39.241 | 158 | 87 | 2 | 16 | 173 | 61 | 209 | 4.42e-24 | 98.6 |
| MS.gene021686.t1 | MTR_3g092150 | 44.355 | 124 | 60 | 3 | 83 | 200 | 41 | 161 | 1.36e-21 | 90.9 |
| MS.gene021686.t1 | MTR_8g026960 | 49.451 | 91 | 39 | 1 | 87 | 170 | 41 | 131 | 7.23e-21 | 89.0 |
| MS.gene021686.t1 | MTR_5g013010 | 42.537 | 134 | 63 | 3 | 49 | 173 | 97 | 225 | 2.51e-20 | 88.6 |
| MS.gene021686.t1 | MTR_7g093430 | 40.157 | 127 | 69 | 1 | 48 | 174 | 128 | 247 | 5.14e-20 | 87.8 |
| MS.gene021686.t1 | MTR_1g054285 | 45.714 | 105 | 50 | 1 | 70 | 174 | 144 | 241 | 1.21e-19 | 86.7 |
| MS.gene021686.t1 | MTR_1g017090 | 48.958 | 96 | 42 | 1 | 79 | 174 | 129 | 217 | 3.41e-19 | 85.5 |
| MS.gene021686.t1 | MTR_4g097600 | 44.860 | 107 | 51 | 2 | 68 | 174 | 116 | 214 | 5.45e-19 | 84.3 |
| MS.gene021686.t1 | MTR_5g014890 | 45.192 | 104 | 50 | 1 | 71 | 174 | 114 | 210 | 6.37e-19 | 84.3 |
| MS.gene021686.t1 | MTR_8g006705 | 49.474 | 95 | 44 | 1 | 79 | 173 | 145 | 235 | 1.54e-18 | 84.0 |
| MS.gene021686.t1 | MTR_2g061030 | 44.954 | 109 | 56 | 2 | 68 | 176 | 188 | 292 | 2.74e-18 | 83.6 |
| MS.gene021686.t1 | MTR_4g126900 | 48.235 | 85 | 44 | 0 | 82 | 166 | 90 | 174 | 6.47e-18 | 80.5 |
| MS.gene021686.t1 | MTR_4g084750 | 45.263 | 95 | 48 | 1 | 79 | 173 | 64 | 154 | 2.04e-16 | 75.9 |
| MS.gene021686.t1 | MTR_5g019680 | 48.889 | 90 | 46 | 0 | 80 | 169 | 53 | 142 | 1.24e-15 | 73.9 |
| MS.gene021686.t1 | MTR_5g019650 | 54.167 | 72 | 33 | 0 | 80 | 151 | 53 | 124 | 1.26e-14 | 71.6 |
| MS.gene021686.t1 | MTR_3g103590 | 32.298 | 161 | 93 | 3 | 59 | 205 | 120 | 278 | 7.41e-14 | 70.5 |
| MS.gene021686.t1 | MTR_5g013010 | 41.304 | 92 | 44 | 2 | 49 | 131 | 97 | 187 | 4.15e-13 | 67.0 |
| MS.gene021686.t1 | MTR_2g038625 | 43.299 | 97 | 51 | 1 | 77 | 173 | 79 | 171 | 1.48e-12 | 65.5 |
| MS.gene021686.t1 | MTR_2g038580 | 43.299 | 97 | 51 | 1 | 77 | 173 | 79 | 171 | 1.48e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021686.t1 | AT3G01220 | 44.086 | 279 | 129 | 12 | 1 | 272 | 16 | 274 | 1.02e-63 | 201 |
| MS.gene021686.t1 | AT5G15150 | 45.051 | 293 | 125 | 12 | 1 | 271 | 22 | 300 | 2.12e-61 | 196 |
| MS.gene021686.t1 | AT1G69780 | 46.097 | 269 | 112 | 10 | 20 | 271 | 35 | 287 | 7.93e-60 | 192 |
| MS.gene021686.t1 | AT1G26960 | 42.599 | 277 | 117 | 11 | 1 | 271 | 8 | 248 | 3.69e-53 | 173 |
| MS.gene021686.t1 | AT5G65310 | 50.000 | 136 | 63 | 1 | 50 | 180 | 19 | 154 | 1.89e-33 | 123 |
| MS.gene021686.t1 | AT5G65310 | 45.509 | 167 | 81 | 3 | 22 | 180 | 8 | 172 | 1.89e-33 | 124 |
| MS.gene021686.t1 | AT2G22430 | 57.732 | 97 | 41 | 0 | 79 | 175 | 61 | 157 | 1.06e-30 | 117 |
| MS.gene021686.t1 | AT4G40060 | 56.701 | 97 | 42 | 0 | 79 | 175 | 58 | 154 | 1.86e-30 | 115 |
| MS.gene021686.t1 | AT3G01470 | 56.701 | 97 | 42 | 0 | 79 | 175 | 67 | 163 | 9.84e-30 | 113 |
| MS.gene021686.t1 | AT2G46680 | 50.549 | 91 | 45 | 0 | 83 | 173 | 35 | 125 | 8.05e-24 | 97.4 |
| MS.gene021686.t1 | AT1G27045 | 40.157 | 127 | 76 | 0 | 49 | 175 | 37 | 163 | 7.00e-23 | 94.0 |
| MS.gene021686.t1 | AT1G27045 | 40.323 | 124 | 74 | 0 | 49 | 172 | 37 | 160 | 2.85e-22 | 93.2 |
| MS.gene021686.t1 | AT5G03790 | 47.664 | 107 | 54 | 1 | 80 | 184 | 77 | 183 | 3.77e-22 | 92.4 |
| MS.gene021686.t1 | AT1G27045 | 44.545 | 110 | 61 | 0 | 66 | 175 | 11 | 120 | 5.62e-22 | 90.5 |
| MS.gene021686.t1 | AT1G27045 | 44.545 | 110 | 61 | 0 | 66 | 175 | 11 | 120 | 5.62e-22 | 90.5 |
| MS.gene021686.t1 | AT1G27045 | 44.545 | 110 | 61 | 0 | 66 | 175 | 3 | 112 | 6.76e-22 | 90.1 |
| MS.gene021686.t1 | AT3G61890 | 48.889 | 90 | 46 | 0 | 83 | 172 | 33 | 122 | 8.53e-22 | 91.3 |
| MS.gene021686.t1 | AT2G46680 | 48.837 | 86 | 44 | 0 | 83 | 168 | 35 | 120 | 2.18e-21 | 90.9 |
| MS.gene021686.t1 | AT5G03790 | 49.485 | 97 | 47 | 1 | 80 | 176 | 77 | 171 | 5.36e-21 | 88.2 |
| MS.gene021686.t1 | AT2G36610 | 45.946 | 111 | 45 | 2 | 72 | 174 | 63 | 166 | 4.71e-20 | 85.5 |
| MS.gene021686.t1 | AT4G17460 | 43.478 | 115 | 61 | 1 | 59 | 173 | 114 | 224 | 5.96e-20 | 87.4 |
| MS.gene021686.t1 | AT2G18550 | 33.871 | 186 | 96 | 5 | 15 | 195 | 7 | 170 | 2.35e-19 | 84.3 |
| MS.gene021686.t1 | AT5G47370 | 39.706 | 136 | 69 | 4 | 45 | 173 | 90 | 219 | 3.23e-19 | 85.5 |
| MS.gene021686.t1 | AT3G60390 | 45.536 | 112 | 52 | 3 | 65 | 173 | 146 | 251 | 8.98e-19 | 84.7 |
| MS.gene021686.t1 | AT5G53980 | 47.872 | 94 | 49 | 0 | 77 | 170 | 8 | 101 | 9.03e-19 | 81.3 |
| MS.gene021686.t1 | AT4G16780 | 44.545 | 110 | 57 | 1 | 64 | 173 | 113 | 218 | 1.26e-18 | 84.0 |
| MS.gene021686.t1 | AT5G06710 | 47.917 | 96 | 46 | 1 | 79 | 174 | 189 | 280 | 3.39e-18 | 83.2 |
| MS.gene021686.t1 | AT2G01430 | 44.118 | 102 | 57 | 0 | 66 | 167 | 125 | 226 | 4.62e-18 | 82.0 |
| MS.gene021686.t1 | AT4G37790 | 45.192 | 104 | 50 | 1 | 71 | 174 | 117 | 213 | 6.44e-18 | 81.6 |
| MS.gene021686.t1 | AT2G22800 | 42.241 | 116 | 51 | 3 | 59 | 174 | 101 | 200 | 2.96e-17 | 79.7 |
| MS.gene021686.t1 | AT2G44910 | 46.316 | 95 | 47 | 1 | 79 | 173 | 162 | 252 | 9.08e-17 | 79.0 |
| MS.gene021686.t1 | AT4G36740 | 42.056 | 107 | 57 | 1 | 80 | 181 | 55 | 161 | 3.50e-16 | 75.9 |
| MS.gene021686.t1 | AT4G36740 | 42.056 | 107 | 57 | 1 | 80 | 181 | 56 | 162 | 3.63e-16 | 75.9 |
| MS.gene021686.t1 | AT1G70920 | 41.818 | 110 | 58 | 2 | 64 | 173 | 55 | 158 | 1.68e-15 | 73.6 |
| MS.gene021686.t1 | AT1G70920 | 41.818 | 110 | 58 | 2 | 64 | 173 | 25 | 128 | 2.09e-15 | 72.8 |
| MS.gene021686.t1 | AT5G66700 | 48.750 | 80 | 38 | 1 | 66 | 145 | 60 | 136 | 1.40e-14 | 71.6 |
| MS.gene021686.t1 | AT5G06710 | 54.717 | 53 | 24 | 0 | 79 | 131 | 189 | 241 | 1.47e-11 | 63.5 |
| MS.gene021686.t1 | AT2G01430 | 48.485 | 66 | 34 | 0 | 66 | 131 | 125 | 190 | 2.38e-11 | 62.4 |
Find 53 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAGAAGAGCTTTGAATT+TGG | 0.186029 | 7.4:+89270739 | MS.gene021686:CDS |
| GTGCAACTTGCTAAGGCTTT+AGG | 0.214413 | 7.4:+89270787 | MS.gene021686:CDS |
| GAAGAAGATCAGGCTGAATT+TGG | 0.249178 | 7.4:+89270702 | MS.gene021686:CDS |
| AGAAGTTGGGGTATGTTGTT+AGG | 0.260017 | 7.4:-89272772 | None:intergenic |
| TGCAACTTGCTAAGGCTTTA+GGG | 0.260540 | 7.4:+89270788 | MS.gene021686:CDS |
| AAGTTGGTAGAAGGCTAATT+AGG | 0.295400 | 7.4:-89272741 | None:intergenic |
| TTGAGAAGAGCTTTGAATTT+GGG | 0.313267 | 7.4:+89270740 | MS.gene021686:CDS |
| AGCCTAGACAAATTGCTATA+TGG | 0.333381 | 7.4:+89270815 | MS.gene021686:CDS |
| TGAAAGAAACTGAGGGTTCA+TGG | 0.388104 | 7.4:+89272626 | MS.gene021686:CDS |
| AGCATCAGAACCTCTGGCCT+TGG | 0.392592 | 7.4:+89272860 | MS.gene021686:CDS |
| GGTTTAATGAAGTTGGTAGA+AGG | 0.399111 | 7.4:-89272750 | None:intergenic |
| TGATGTGAATTGAAGAAGTT+GGG | 0.408685 | 7.4:-89272785 | None:intergenic |
| GCTGAATTTGGATCAAGTTC+AGG | 0.410690 | 7.4:+89270714 | MS.gene021686:CDS |
| GTGGAGAGAAGAAGAAGATC+AGG | 0.413666 | 7.4:+89270692 | MS.gene021686:CDS |
| TTGTTAGGGTTTAATGAAGT+TGG | 0.422091 | 7.4:-89272757 | None:intergenic |
| GAAGTTGGGGTATGTTGTTA+GGG | 0.425644 | 7.4:-89272771 | None:intergenic |
| TCTTCTTCTTCTCTCCACTT+TGG | 0.431006 | 7.4:-89270687 | None:intergenic |
| TTGATGTGAATTGAAGAAGT+TGG | 0.467181 | 7.4:-89272786 | None:intergenic |
| AAGTGTTGAGGTGGAAAAGA+AGG | 0.489869 | 7.4:-89270116 | None:intergenic |
| AACAAGAAACTATGAGGTGG+TGG | 0.493336 | 7.4:-89270041 | None:intergenic |
| AAGAAAAGTGCAACTTGCTA+AGG | 0.504058 | 7.4:+89270780 | MS.gene021686:CDS |
| TTGATGAGCATCAGAACCTC+TGG | 0.507447 | 7.4:+89272854 | MS.gene021686:CDS |
| AGTGTTGAGGTGGAAAAGAA+GGG | 0.508674 | 7.4:-89270115 | None:intergenic |
| CAAATTCAAAGCTCTTCTCA+AGG | 0.519428 | 7.4:-89270738 | None:intergenic |
| AGTTCTATTTCTTCACAGAA+TGG | 0.521830 | 7.4:+89272712 | MS.gene021686:CDS |
| GAAGAAATTTGAAGCTGTCA+AGG | 0.526329 | 7.4:+89270900 | MS.gene021686:CDS |
| GATGATGACTTATCTGATGA+TGG | 0.529959 | 7.4:+89270661 | MS.gene021686:CDS |
| AAAAGCAAGGATTGGTGTGA+AGG | 0.539700 | 7.4:+89272586 | MS.gene021686:CDS |
| CCACCTCAACACTTTCAACA+AGG | 0.552469 | 7.4:+89270125 | MS.gene021686:CDS |
| CCTTGTTGAAAGTGTTGAGG+TGG | 0.554667 | 7.4:-89270125 | None:intergenic |
| AAGGTGTTAAGAGAAGTTGA+AGG | 0.567749 | 7.4:-89270092 | None:intergenic |
| TTGAGGTGGAAAAGAAGGGA+AGG | 0.568416 | 7.4:-89270111 | None:intergenic |
| AGCAAGGATTGGTGTGAAGG+TGG | 0.575668 | 7.4:+89272589 | MS.gene021686:CDS |
| TTTAGATCTCTCAAGAACAC+AGG | 0.581192 | 7.4:+89272681 | MS.gene021686:CDS |
| AGGTGTTAAGAGAAGTTGAA+GGG | 0.587354 | 7.4:-89270091 | None:intergenic |
| AAATTCAAAGCTCTTCTCAA+GGG | 0.589863 | 7.4:-89270737 | None:intergenic |
| AACCATATAGCAATTTGTCT+AGG | 0.597887 | 7.4:-89270817 | None:intergenic |
| ATGCATAATGAAAGAAACTG+AGG | 0.602715 | 7.4:+89272618 | MS.gene021686:CDS |
| ACTGAGGGTTCATGGAGCAA+TGG | 0.602832 | 7.4:+89272634 | MS.gene021686:CDS |
| ACAAGAAACTATGAGGTGGT+GGG | 0.605048 | 7.4:-89270040 | None:intergenic |
| TAATCAGAAACTACAAGGAG+AGG | 0.617126 | 7.4:+89270948 | MS.gene021686:CDS |
| GTTCATAATCAGAAACTACA+AGG | 0.617357 | 7.4:+89270943 | MS.gene021686:CDS |
| AGTTGATCATGATCTTCATG+AGG | 0.620183 | 7.4:-89270068 | None:intergenic |
| AAATGATGCATCTATGTCCA+AGG | 0.620204 | 7.4:-89272877 | None:intergenic |
| GGGTTAAACAAGAAACTATG+AGG | 0.624170 | 7.4:-89270047 | None:intergenic |
| CATGATCATCATGAAGTGCA+TGG | 0.624861 | 7.4:+89270637 | MS.gene021686:CDS |
| TCTGATGATGGATTCCAAAG+TGG | 0.629793 | 7.4:+89270673 | MS.gene021686:CDS |
| TGACCTTGTTGAAAGTGTTG+AGG | 0.631537 | 7.4:-89270128 | None:intergenic |
| TGCATAATGAAAGAAACTGA+GGG | 0.634219 | 7.4:+89272619 | MS.gene021686:CDS |
| GTTGATCATGATCTTCATGA+GGG | 0.635617 | 7.4:-89270067 | None:intergenic |
| GCATCTATGTCCAAGGCCAG+AGG | 0.638650 | 7.4:-89272870 | None:intergenic |
| GATGTGAATTGAAGAAGTTG+GGG | 0.704596 | 7.4:-89272784 | None:intergenic |
| TTAAACAAGAAACTATGAGG+TGG | 0.721896 | 7.4:-89270044 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAGTCAAATAAATAA+GGG | - | chr7.4:89271794-89271813 | None:intergenic | 10.0% |
| !!! | AATTTTTTGATATATTTCAA+CGG | + | chr7.4:89272238-89272257 | MS.gene021686:intron | 10.0% |
| !!! | TTAAATAACAATTTGTTATT+GGG | + | chr7.4:89271533-89271552 | MS.gene021686:intron | 10.0% |
| !!! | TTTAAATAACAATTTGTTAT+TGG | + | chr7.4:89271532-89271551 | MS.gene021686:intron | 10.0% |
| !! | GTAATAAAGTCAAATAAATA+AGG | - | chr7.4:89271795-89271814 | None:intergenic | 15.0% |
| !! | TAAATTTATATTGAAATTGG+TGG | + | chr7.4:89272197-89272216 | MS.gene021686:intron | 15.0% |
| !! | TATCTCTTTATATCATAAAA+AGG | + | chr7.4:89270169-89270188 | MS.gene021686:intron | 15.0% |
| !! | TTTATTTATATCAATCACAA+AGG | - | chr7.4:89271734-89271753 | None:intergenic | 15.0% |
| !!! | ATAAATTGATAATTTTGTGT+TGG | + | chr7.4:89271749-89271768 | MS.gene021686:intron | 15.0% |
| !!! | ATTTAAAACAACAATAAAAC+CGG | - | chr7.4:89270198-89270217 | None:intergenic | 15.0% |
| !! | AAGAGACTGATAATATTTAA+AGG | + | chr7.4:89272128-89272147 | MS.gene021686:intron | 20.0% |
| !! | AGAGACTGATAATATTTAAA+GGG | + | chr7.4:89272129-89272148 | MS.gene021686:intron | 20.0% |
| !! | CATAACTAAAAATGGTAAAA+GGG | + | chr7.4:89271347-89271366 | MS.gene021686:intron | 20.0% |
| !! | TTAATGCATTATGATTCTAT+AGG | + | chr7.4:89271862-89271881 | MS.gene021686:intron | 20.0% |
| !! | TTATAAGTATCAAAATGTGT+TGG | + | chr7.4:89271303-89271322 | MS.gene021686:intron | 20.0% |
| !! | TTATATCATAAAAAGGTAAC+CGG | + | chr7.4:89270176-89270195 | MS.gene021686:intron | 20.0% |
| !!! | AAATTCATAGTTCTGAATTA+TGG | - | chr7.4:89270531-89270550 | None:intergenic | 20.0% |
| !!! | ATTAGAGTTATACTCTTTTA+TGG | - | chr7.4:89271562-89271581 | None:intergenic | 20.0% |
| !!! | ATTGATTTCTTCAACAAAAA+AGG | - | chr7.4:89270589-89270608 | None:intergenic | 20.0% |
| !!! | CATTTTTTTTGTTATGTCTT+AGG | + | chr7.4:89270559-89270578 | MS.gene021686:intron | 20.0% |
| !!! | CTTTTACCATTTTTAGTTAT+GGG | - | chr7.4:89271348-89271367 | None:intergenic | 20.0% |
| !!! | TCTTTTATGTTTTAACCTAA+TGG | + | chr7.4:89272538-89272557 | MS.gene021686:intron | 20.0% |
| !!! | TTTAAAATATATTCAGTGTC+TGG | + | chr7.4:89272312-89272331 | MS.gene021686:intron | 20.0% |
| !!! | TTTCATCTTGATTTGAATAT+AGG | + | chr7.4:89271118-89271137 | MS.gene021686:intron | 20.0% |
| !!! | TTTTACCATTTTTAGTTATG+GGG | - | chr7.4:89271347-89271366 | None:intergenic | 20.0% |
| ! | AACTAATATGCTTTAACACA+TGG | + | chr7.4:89272080-89272099 | MS.gene021686:intron | 25.0% |
| ! | ACTATTACTTTGATACACAA+AGG | - | chr7.4:89271421-89271440 | None:intergenic | 25.0% |
| ! | ATAATCCCCATAACTAAAAA+TGG | + | chr7.4:89271339-89271358 | MS.gene021686:intron | 25.0% |
| ! | ATGTGTTAAAGCATATTAGT+TGG | - | chr7.4:89272081-89272100 | None:intergenic | 25.0% |
| ! | CAATAATAGTTAATGACACA+TGG | - | chr7.4:89271188-89271207 | None:intergenic | 25.0% |
| ! | CCATAACTAAAAATGGTAAA+AGG | + | chr7.4:89271346-89271365 | MS.gene021686:intron | 25.0% |
| ! | GAAAGTTAATATGTGGATAT+TGG | - | chr7.4:89271910-89271929 | None:intergenic | 25.0% |
| ! | TTGAATGTAACTACATATGT+TGG | - | chr7.4:89272365-89272384 | None:intergenic | 25.0% |
| !! | AATTAGAAAAGAGAGAGTAT+AGG | - | chr7.4:89270992-89271011 | None:intergenic | 25.0% |
| !! | ATGAAAGTATAGTCCAATTA+TGG | - | chr7.4:89270501-89270520 | None:intergenic | 25.0% |
| !! | ATTAGAAAAGAGAGAGTATA+GGG | - | chr7.4:89270991-89271010 | None:intergenic | 25.0% |
| !! | ATTGAATATGAGAGTATGAT+AGG | + | chr7.4:89271263-89271282 | MS.gene021686:intron | 25.0% |
| !! | CAAAGTAATAGTGAAGTTTT+AGG | + | chr7.4:89271429-89271448 | MS.gene021686:intron | 25.0% |
| !! | TATCAATCTAAAGCCATAAT+TGG | + | chr7.4:89270485-89270504 | MS.gene021686:intron | 25.0% |
| !!! | AAGAAATCAATGTCATTTTC+GGG | + | chr7.4:89270598-89270617 | MS.gene021686:CDS | 25.0% |
| !!! | CCTTTTACCATTTTTAGTTA+TGG | - | chr7.4:89271349-89271368 | None:intergenic | 25.0% |
| !!! | GAAGAAATCAATGTCATTTT+CGG | + | chr7.4:89270597-89270616 | MS.gene021686:CDS | 25.0% |
| !!! | TTTTAGGAGCAATTCATAAA+GGG | + | chr7.4:89271445-89271464 | MS.gene021686:intron | 25.0% |
| AAATTCAAAGCTCTTCTCAA+GGG | - | chr7.4:89270740-89270759 | None:intergenic | 30.0% | |
| AACCATATAGCAATTTGTCT+AGG | - | chr7.4:89270820-89270839 | None:intergenic | 30.0% | |
| AAGCATTAAAAAGCAAGGAT+TGG | + | chr7.4:89272578-89272597 | MS.gene021686:CDS | 30.0% | |
| AATGTAACTACATATGTTGG+TGG | - | chr7.4:89272362-89272381 | None:intergenic | 30.0% | |
| ACTTTCTCTCGATTAATTGT+TGG | + | chr7.4:89271924-89271943 | MS.gene021686:intron | 30.0% | |
| ATCGAGAGAAAGTTAATATG+TGG | - | chr7.4:89271917-89271936 | None:intergenic | 30.0% | |
| ATGCATAATGAAAGAAACTG+AGG | + | chr7.4:89272618-89272637 | MS.gene021686:CDS | 30.0% | |
| CATGCAAAAACATATCACAA+TGG | - | chr7.4:89271607-89271626 | None:intergenic | 30.0% | |
| GAGTCCAATATAAGTTTCAA+AGG | - | chr7.4:89270317-89270336 | None:intergenic | 30.0% | |
| GTTACAAGCATTAAAAAGCA+AGG | + | chr7.4:89272573-89272592 | MS.gene021686:intron | 30.0% | |
| GTTCATAATCAGAAACTACA+AGG | + | chr7.4:89270943-89270962 | MS.gene021686:CDS | 30.0% | |
| TCTTCATGTCAATTTCAACA+TGG | - | chr7.4:89272112-89272131 | None:intergenic | 30.0% | |
| TGATGTGAATTGAAGAAGTT+GGG | - | chr7.4:89272788-89272807 | None:intergenic | 30.0% | |
| TGCATAATGAAAGAAACTGA+GGG | + | chr7.4:89272619-89272638 | MS.gene021686:CDS | 30.0% | |
| TTAAACAAGAAACTATGAGG+TGG | - | chr7.4:89270047-89270066 | None:intergenic | 30.0% | |
| TTAAGTCGAAGAAGAATTTG+AGG | - | chr7.4:89271145-89271164 | None:intergenic | 30.0% | |
| TTGATGTGAATTGAAGAAGT+TGG | - | chr7.4:89272789-89272808 | None:intergenic | 30.0% | |
| TTGGACTATACTTTCATTTG+TGG | + | chr7.4:89270504-89270523 | MS.gene021686:intron | 30.0% | |
| TTGTTAGGGTTTAATGAAGT+TGG | - | chr7.4:89272760-89272779 | None:intergenic | 30.0% | |
| TTTAGGAGCAATTCATAAAG+GGG | + | chr7.4:89271446-89271465 | MS.gene021686:intron | 30.0% | |
| ! | AAGTTTTCATCTTGAAGATC+TGG | - | chr7.4:89272814-89272833 | None:intergenic | 30.0% |
| ! | AGAGTTATACTCTTTTATGG+TGG | - | chr7.4:89271559-89271578 | None:intergenic | 30.0% |
| ! | AGTTCTATTTCTTCACAGAA+TGG | + | chr7.4:89272712-89272731 | MS.gene021686:CDS | 30.0% |
| ! | ATGATGATTGAAAGCATGTT+CGG | - | chr7.4:89272479-89272498 | None:intergenic | 30.0% |
| ! | TTTTGTGTTGGAAGAAAGAA+AGG | + | chr7.4:89271761-89271780 | MS.gene021686:intron | 30.0% |
| !! | TCTCTCTGGAGTAAAATATT+AGG | - | chr7.4:89271216-89271235 | None:intergenic | 30.0% |
| !! | TTGAGAAGAGCTTTGAATTT+GGG | + | chr7.4:89270740-89270759 | MS.gene021686:CDS | 30.0% |
| !!! | GTTGTTTTAAATTGCAGTTG+CGG | + | chr7.4:89270206-89270225 | MS.gene021686:intron | 30.0% |
| !!! | GTTTTAGGAGCAATTCATAA+AGG | + | chr7.4:89271444-89271463 | MS.gene021686:intron | 30.0% |
| AAATATATTCAGTGTCTGGC+AGG | + | chr7.4:89272316-89272335 | MS.gene021686:intron | 35.0% | |
| AGCCTAGACAAATTGCTATA+TGG | + | chr7.4:89270815-89270834 | MS.gene021686:CDS | 35.0% | |
| AGGTGTTAAGAGAAGTTGAA+GGG | - | chr7.4:89270094-89270113 | None:intergenic | 35.0% | |
| AGTTGATCATGATCTTCATG+AGG | - | chr7.4:89270071-89270090 | None:intergenic | 35.0% | |
| ATATGTTGTGACCGCAATTA+AGG | - | chr7.4:89270364-89270383 | None:intergenic | 35.0% | |
| ATGTCTTGTGCTTAGAAACA+TGG | - | chr7.4:89272045-89272064 | None:intergenic | 35.0% | |
| CAAATTCAAAGCTCTTCTCA+AGG | - | chr7.4:89270741-89270760 | None:intergenic | 35.0% | |
| GATGATGACTTATCTGATGA+TGG | + | chr7.4:89270661-89270680 | MS.gene021686:CDS | 35.0% | |
| GATGTGAATTGAAGAAGTTG+GGG | - | chr7.4:89272787-89272806 | None:intergenic | 35.0% | |
| GGGTTAAACAAGAAACTATG+AGG | - | chr7.4:89270050-89270069 | None:intergenic | 35.0% | |
| GTAGTCTGTAACCTTAATTG+CGG | + | chr7.4:89270350-89270369 | MS.gene021686:intron | 35.0% | |
| GTTGATCATGATCTTCATGA+GGG | - | chr7.4:89270070-89270089 | None:intergenic | 35.0% | |
| TAATCAGAAACTACAAGGAG+AGG | + | chr7.4:89270948-89270967 | MS.gene021686:CDS | 35.0% | |
| TCGTAGCATAATTACATCTG+CGG | + | chr7.4:89270457-89270476 | MS.gene021686:intron | 35.0% | |
| TGAAACTTATATTGGACTCG+TGG | + | chr7.4:89270318-89270337 | MS.gene021686:intron | 35.0% | |
| TGACATAGCAACCACAATTA+TGG | - | chr7.4:89270285-89270304 | None:intergenic | 35.0% | |
| TTCATAAAGGGGAACATGAT+TGG | + | chr7.4:89271457-89271476 | MS.gene021686:intron | 35.0% | |
| TTTAGATCTCTCAAGAACAC+AGG | + | chr7.4:89272681-89272700 | MS.gene021686:CDS | 35.0% | |
| ! | AAGGTGTTAAGAGAAGTTGA+AGG | - | chr7.4:89270095-89270114 | None:intergenic | 35.0% |
| ! | CAAGTTGCACTTTTCTTTCT+GGG | - | chr7.4:89270777-89270796 | None:intergenic | 35.0% |
| ! | GAAGAAATTTGAAGCTGTCA+AGG | + | chr7.4:89270900-89270919 | MS.gene021686:CDS | 35.0% |
| !! | AAGAAAAGTGCAACTTGCTA+AGG | + | chr7.4:89270780-89270799 | MS.gene021686:CDS | 35.0% |
| !! | AAGTTGGTAGAAGGCTAATT+AGG | - | chr7.4:89272744-89272763 | None:intergenic | 35.0% |
| !! | ATACTGACTCTTCACAAGAA+TGG | - | chr7.4:89271950-89271969 | None:intergenic | 35.0% |
| !! | CTTGAGAAGAGCTTTGAATT+TGG | + | chr7.4:89270739-89270758 | MS.gene021686:CDS | 35.0% |
| !! | GAGGCCTTTGAAACTTATAT+TGG | + | chr7.4:89270310-89270329 | MS.gene021686:intron | 35.0% |
| !! | GGTTTAATGAAGTTGGTAGA+AGG | - | chr7.4:89272753-89272772 | None:intergenic | 35.0% |
| AACAAGAAACTATGAGGTGG+TGG | - | chr7.4:89270044-89270063 | None:intergenic | 40.0% | |
| AACCACAATTATGGTCGCAT+CGG | - | chr7.4:89270276-89270295 | None:intergenic | 40.0% | |
| AACTGCAATGCAACACCATT+AGG | - | chr7.4:89272556-89272575 | None:intergenic | 40.0% | |
| ACAAGAAACTATGAGGTGGT+GGG | - | chr7.4:89270043-89270062 | None:intergenic | 40.0% | |
| AGAAGTTGGGGTATGTTGTT+AGG | - | chr7.4:89272775-89272794 | None:intergenic | 40.0% | |
| CATGATCATCATGAAGTGCA+TGG | + | chr7.4:89270637-89270656 | MS.gene021686:CDS | 40.0% | |
| GAAACTACAAGGAGAGGTAA+AGG | + | chr7.4:89270954-89270973 | MS.gene021686:intron | 40.0% | |
| GAAGAAGATCAGGCTGAATT+TGG | + | chr7.4:89270702-89270721 | MS.gene021686:CDS | 40.0% | |
| GAAGTTGGGGTATGTTGTTA+GGG | - | chr7.4:89272774-89272793 | None:intergenic | 40.0% | |
| GCTGAATTTGGATCAAGTTC+AGG | + | chr7.4:89270714-89270733 | MS.gene021686:CDS | 40.0% | |
| GTCTGTGCATCAGTACTTAA+AGG | + | chr7.4:89272422-89272441 | MS.gene021686:intron | 40.0% | |
| TCTTCTTCTTCTCTCCACTT+TGG | - | chr7.4:89270690-89270709 | None:intergenic | 40.0% | |
| TGAAAGAAACTGAGGGTTCA+TGG | + | chr7.4:89272626-89272645 | MS.gene021686:CDS | 40.0% | |
| TGCTACGAACGTTTATGTTG+CGG | - | chr7.4:89270445-89270464 | None:intergenic | 40.0% | |
| ! | AAAAGCAAGGATTGGTGTGA+AGG | + | chr7.4:89272586-89272605 | MS.gene021686:CDS | 40.0% |
| ! | AGTGTTGAGGTGGAAAAGAA+GGG | - | chr7.4:89270118-89270137 | None:intergenic | 40.0% |
| ! | GCAAGTTGCACTTTTCTTTC+TGG | - | chr7.4:89270778-89270797 | None:intergenic | 40.0% |
| ! | GGGAGTAGTGTGCTATTAAT+CGG | + | chr7.4:89271367-89271386 | MS.gene021686:intron | 40.0% |
| ! | TGCGGTCACAACATATTTTG+AGG | + | chr7.4:89270368-89270387 | MS.gene021686:intron | 40.0% |
| !! | AAGTGTTGAGGTGGAAAAGA+AGG | - | chr7.4:89270119-89270138 | None:intergenic | 40.0% |
| !! | TCTGATGATGGATTCCAAAG+TGG | + | chr7.4:89270673-89270692 | MS.gene021686:CDS | 40.0% |
| !! | TGACCTTGTTGAAAGTGTTG+AGG | - | chr7.4:89270131-89270150 | None:intergenic | 40.0% |
| !! | TGCAACTTGCTAAGGCTTTA+GGG | + | chr7.4:89270788-89270807 | MS.gene021686:CDS | 40.0% |
| AACCACAGTTAAAGCCGCAT+TGG | + | chr7.4:89270409-89270428 | MS.gene021686:intron | 45.0% | |
| CCACCTCAACACTTTCAACA+AGG | + | chr7.4:89270125-89270144 | MS.gene021686:CDS | 45.0% | |
| GCTACGAACGTTTATGTTGC+GGG | - | chr7.4:89270444-89270463 | None:intergenic | 45.0% | |
| GTCTAACACACTGATGCGTT+AGG | - | chr7.4:89272455-89272474 | None:intergenic | 45.0% | |
| GTGGAGAGAAGAAGAAGATC+AGG | + | chr7.4:89270692-89270711 | MS.gene021686:CDS | 45.0% | |
| TTGAGGTGGAAAAGAAGGGA+AGG | - | chr7.4:89270114-89270133 | None:intergenic | 45.0% | |
| TTGATGAGCATCAGAACCTC+TGG | + | chr7.4:89272854-89272873 | MS.gene021686:CDS | 45.0% | |
| !! | ATATGTTGGTGGTCTCGTGT+CGG | - | chr7.4:89272351-89272370 | None:intergenic | 45.0% |
| !! | CCTTGTTGAAAGTGTTGAGG+TGG | - | chr7.4:89270128-89270147 | None:intergenic | 45.0% |
| !! | GTGCAACTTGCTAAGGCTTT+AGG | + | chr7.4:89270787-89270806 | MS.gene021686:CDS | 45.0% |
| !! | TAATAAATTTATATTGAAAT+TGG | + | chr7.4:89272194-89272213 | MS.gene021686:intron | 5.0% |
| ACTGAGGGTTCATGGAGCAA+TGG | + | chr7.4:89272634-89272653 | MS.gene021686:CDS | 50.0% | |
| CTTCTCTCTCTCTCTCTCTC+TGG | - | chr7.4:89271230-89271249 | None:intergenic | 50.0% | |
| GACCGATGCGACCATAATTG+TGG | + | chr7.4:89270271-89270290 | MS.gene021686:intron | 50.0% | |
| GCGGGAAAATGTGACCAATG+CGG | - | chr7.4:89270426-89270445 | None:intergenic | 50.0% | |
| TGGTTGCTATGTCATCGCAG+AGG | + | chr7.4:89270291-89270310 | MS.gene021686:intron | 50.0% | |
| ! | AGCAAGGATTGGTGTGAAGG+TGG | + | chr7.4:89272589-89272608 | MS.gene021686:CDS | 50.0% |
| ! | GACCAATGCGGCTTTAACTG+TGG | - | chr7.4:89270414-89270433 | None:intergenic | 50.0% |
| AGCATCAGAACCTCTGGCCT+TGG | + | chr7.4:89272860-89272879 | MS.gene021686:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 89270032 | 89272888 | 89270032 | ID=MS.gene021686 |
| chr7.4 | mRNA | 89270032 | 89272888 | 89270032 | ID=MS.gene021686.t1;Parent=MS.gene021686 |
| chr7.4 | exon | 89270032 | 89270146 | 89270032 | ID=MS.gene021686.t1.exon1;Parent=MS.gene021686.t1 |
| chr7.4 | CDS | 89270032 | 89270146 | 89270032 | ID=cds.MS.gene021686.t1;Parent=MS.gene021686.t1 |
| chr7.4 | exon | 89270581 | 89270969 | 89270581 | ID=MS.gene021686.t1.exon2;Parent=MS.gene021686.t1 |
| chr7.4 | CDS | 89270581 | 89270969 | 89270581 | ID=cds.MS.gene021686.t1;Parent=MS.gene021686.t1 |
| chr7.4 | exon | 89272574 | 89272888 | 89272574 | ID=MS.gene021686.t1.exon3;Parent=MS.gene021686.t1 |
| chr7.4 | CDS | 89272574 | 89272888 | 89272574 | ID=cds.MS.gene021686.t1;Parent=MS.gene021686.t1 |
| Gene Sequence |
| Protein sequence |
