Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021695.t1 | XP_003621186.2 | 97.9 | 238 | 5 | 0 | 30 | 267 | 88 | 325 | 6.70E-125 | 456.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021695.t1 | P81392 | 43.6 | 234 | 105 | 8 | 30 | 251 | 88 | 306 | 2.8e-34 | 147.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021695.t1 | Q2HVT2 | 97.9 | 238 | 5 | 0 | 30 | 267 | 88 | 325 | 4.9e-125 | 456.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene021695.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021695.t1 | MTR_7g010210 | 97.899 | 238 | 5 | 0 | 30 | 267 | 88 | 325 | 7.10e-170 | 472 |
MS.gene021695.t1 | MTR_7g010210 | 69.874 | 239 | 16 | 3 | 30 | 267 | 88 | 271 | 3.25e-108 | 314 |
MS.gene021695.t1 | MTR_6g012180 | 57.322 | 239 | 73 | 8 | 30 | 256 | 88 | 309 | 5.81e-67 | 211 |
MS.gene021695.t1 | MTR_3g039990 | 41.667 | 240 | 99 | 9 | 30 | 257 | 89 | 299 | 8.17e-39 | 138 |
MS.gene021695.t1 | MTR_0140s0030 | 39.526 | 253 | 109 | 11 | 30 | 257 | 89 | 322 | 1.78e-35 | 129 |
MS.gene021695.t1 | MTR_0489s0020 | 39.526 | 253 | 109 | 11 | 30 | 257 | 89 | 322 | 1.78e-35 | 129 |
MS.gene021695.t1 | MTR_7g087130 | 28.179 | 291 | 126 | 10 | 7 | 249 | 68 | 323 | 3.59e-15 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021695.t1 | AT3G28910 | 41.909 | 241 | 99 | 8 | 30 | 250 | 12 | 231 | 5.45e-39 | 136 |
MS.gene021695.t1 | AT3G28910 | 41.909 | 241 | 99 | 8 | 30 | 250 | 88 | 307 | 1.49e-37 | 135 |
MS.gene021695.t1 | AT5G62470 | 40.856 | 257 | 110 | 6 | 30 | 251 | 88 | 337 | 1.01e-36 | 133 |
MS.gene021695.t1 | AT5G62470 | 40.856 | 257 | 110 | 6 | 30 | 251 | 87 | 336 | 1.01e-36 | 133 |
MS.gene021695.t1 | AT3G47600 | 40.079 | 252 | 98 | 9 | 30 | 251 | 82 | 310 | 2.45e-34 | 126 |
MS.gene021695.t1 | AT3G47600 | 39.300 | 257 | 113 | 9 | 21 | 251 | 77 | 316 | 2.62e-34 | 126 |
MS.gene021695.t1 | AT1G74650 | 38.636 | 264 | 104 | 11 | 25 | 260 | 1 | 234 | 1.50e-28 | 109 |
MS.gene021695.t1 | AT1G74650 | 37.209 | 258 | 105 | 10 | 30 | 260 | 12 | 239 | 5.29e-28 | 108 |
MS.gene021695.t1 | AT1G74650 | 38.760 | 258 | 101 | 10 | 30 | 260 | 88 | 315 | 7.61e-27 | 106 |
MS.gene021695.t1 | AT1G08810 | 33.745 | 243 | 77 | 8 | 28 | 252 | 3 | 179 | 1.40e-21 | 89.7 |
MS.gene021695.t1 | AT1G08810 | 33.745 | 243 | 77 | 8 | 28 | 252 | 3 | 179 | 1.40e-21 | 89.7 |
MS.gene021695.t1 | AT1G08810 | 32.830 | 265 | 87 | 10 | 7 | 251 | 68 | 261 | 2.72e-21 | 90.9 |
MS.gene021695.t1 | AT5G15310 | 61.538 | 39 | 15 | 0 | 22 | 60 | 1 | 39 | 9.38e-12 | 63.9 |
MS.gene021695.t1 | AT3G01140 | 34.677 | 124 | 51 | 5 | 30 | 125 | 88 | 209 | 9.87e-11 | 61.6 |
Find 42 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATCATGAATACATTATTT+AGG | 0.228293 | 7.4:-89040774 | MS.gene021695:intron |
AACATAGCTCGTTTACTAAA+AGG | 0.252975 | 7.4:-89039709 | MS.gene021695:CDS |
CTTCTTTCCCATTGACCTCT+TGG | 0.294000 | 7.4:+89039892 | None:intergenic |
AAGAACATGGTCCTGGAAAT+TGG | 0.298566 | 7.4:-89040947 | None:intergenic |
AGTTGTCCTGAAAAGGTATT+AGG | 0.303742 | 7.4:-89039391 | MS.gene021695:CDS |
GAAACATTTGAATCTTTGTT+TGG | 0.358400 | 7.4:-89039571 | MS.gene021695:CDS |
ATGTCATTATCTGTTCTTTG+TGG | 0.377477 | 7.4:+89040027 | None:intergenic |
GTACTAACCGATGATTTGAT+TGG | 0.381105 | 7.4:+89039673 | None:intergenic |
GAAAATGAGTTACTATTTGT+AGG | 0.397920 | 7.4:+89039781 | None:intergenic |
GGAACAGCCCTCCAATTTCC+AGG | 0.403047 | 7.4:+89040936 | None:intergenic |
TATGAACTATTAACCTGTCT+TGG | 0.426618 | 7.4:+89040911 | None:intergenic |
AGATTGACCTGGTTCTTTAG+TGG | 0.427373 | 7.4:+89039756 | None:intergenic |
ATGATCAACAACAGTCCTCT+TGG | 0.437915 | 7.4:+89040790 | None:intergenic |
CCATTTCTCAAGCAAAGAAA+AGG | 0.449839 | 7.4:+89039429 | None:intergenic |
TCTTGTAAAACCGTTGCGTC+TGG | 0.450422 | 7.4:+89039487 | None:intergenic |
AACTATTAACCTGTCTTGGT+TGG | 0.452548 | 7.4:+89040915 | None:intergenic |
AAGAATTCCAAGAGGTCAAT+GGG | 0.456644 | 7.4:-89039899 | MS.gene021695:CDS |
ATTGTTTCCGAACCAACATC+AGG | 0.463985 | 7.4:+89039454 | None:intergenic |
AAAGAATTCCAAGAGGTCAA+TGG | 0.463998 | 7.4:-89039900 | MS.gene021695:CDS |
AAAATGAGTTACTATTTGTA+GGG | 0.472669 | 7.4:+89039782 | None:intergenic |
TGAAGCAAGTTGTCCTGAAA+AGG | 0.483879 | 7.4:-89039398 | MS.gene021695:CDS |
CATTATCTGTTCTTTGTGGA+AGG | 0.487830 | 7.4:+89040031 | None:intergenic |
AAGTAAGCCTGATGTTGGTT+CGG | 0.506124 | 7.4:-89039461 | MS.gene021695:CDS |
TATATACAAGAACATGGTCC+TGG | 0.507906 | 7.4:-89040954 | None:intergenic |
GCCTCTAGTAGTGGAACAAA+GGG | 0.509575 | 7.4:-89039607 | MS.gene021695:CDS |
GGCAGAATCAAAGTTGTTGA+AGG | 0.509963 | 7.4:+89039627 | None:intergenic |
AGGGCTGTTCCAACCAAGAC+AGG | 0.512302 | 7.4:-89040924 | MS.gene021695:intron |
AAGCTCAAGAAATCACAAAC+AGG | 0.513721 | 7.4:-89039973 | MS.gene021695:CDS |
TTTGATTCTGCCTCTAGTAG+TGG | 0.523596 | 7.4:-89039616 | MS.gene021695:CDS |
TAGCTCGTTTACTAAAAGGT+TGG | 0.524179 | 7.4:-89039705 | MS.gene021695:CDS |
ACTTCAAACAGATATTCAAA+TGG | 0.548282 | 7.4:-89039869 | MS.gene021695:CDS |
ATCTTTGTCACCAGACGCAA+CGG | 0.557723 | 7.4:-89039497 | MS.gene021695:CDS |
CATTTCTCAAGCAAAGAAAA+GGG | 0.562614 | 7.4:+89039430 | None:intergenic |
TGCCTCTAGTAGTGGAACAA+AGG | 0.565467 | 7.4:-89039608 | MS.gene021695:CDS |
GATGAAAGTAAGCCTGATGT+TGG | 0.577667 | 7.4:-89039466 | MS.gene021695:CDS |
ACCCTTTGTTCCACTACTAG+AGG | 0.586721 | 7.4:+89039606 | None:intergenic |
AACATGGTCCTGGAAATTGG+AGG | 0.614224 | 7.4:-89040944 | MS.gene021695:CDS |
GATGACTCCAAAGACTCCAA+AGG | 0.614822 | 7.4:+89039541 | None:intergenic |
ACATGGTCCTGGAAATTGGA+GGG | 0.621706 | 7.4:-89040943 | MS.gene021695:CDS |
GAAAAGGTATTAGGTTGTGA+TGG | 0.624953 | 7.4:-89039382 | MS.gene021695:CDS |
TAGGAAAATCATGATCCAAG+AGG | 0.661671 | 7.4:-89040805 | MS.gene021695:CDS |
GCATCTCAAAGAATTCCAAG+AGG | 0.704482 | 7.4:-89039907 | MS.gene021695:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAACTACTAAAAAAAT+TGG | + | chr7.4:89040174-89040193 | None:intergenic | 10.0% |
!! | ATACAAAAAATTATAGAAAT+AGG | + | chr7.4:89040033-89040052 | None:intergenic | 10.0% |
!! | TACAAAAAATTATAGAAATA+GGG | + | chr7.4:89040032-89040051 | None:intergenic | 10.0% |
!!! | ATTAATTTATTTGATTTTTG+TGG | - | chr7.4:89039631-89039650 | MS.gene021695:CDS | 10.0% |
!!! | ATTTTTTTAGTAGTTTTTTT+TGG | - | chr7.4:89040174-89040193 | MS.gene021695:intron | 10.0% |
!!! | TTTTATTTTTATTACTTAAC+TGG | - | chr7.4:89039550-89039569 | MS.gene021695:CDS | 10.0% |
!! | ATAATGACATAAAAAACTAT+TGG | - | chr7.4:89040287-89040306 | MS.gene021695:intron | 15.0% |
!! | TTATTCAAATTATGAAGAAA+AGG | + | chr7.4:89039805-89039824 | None:intergenic | 15.0% |
!! | TTTAAATATCCCTAAAAAAA+AGG | - | chr7.4:89040074-89040093 | MS.gene021695:intron | 15.0% |
!!! | AAATTAGAAGATAATTTTTG+TGG | + | chr7.4:89040487-89040506 | None:intergenic | 15.0% |
!! | AAAATGAGTTACTATTTGTA+GGG | + | chr7.4:89040522-89040541 | None:intergenic | 20.0% |
!! | ATCTTTATGGAATTAAAAAC+AGG | + | chr7.4:89039952-89039971 | None:intergenic | 20.0% |
!! | GTATATCATAGATCATTAAT+AGG | - | chr7.4:89039477-89039496 | MS.gene021695:CDS | 20.0% |
!! | TCATAACTAGTATATCTTTA+TGG | + | chr7.4:89039965-89039984 | None:intergenic | 20.0% |
!! | TGATCATGAATACATTATTT+AGG | - | chr7.4:89039527-89039546 | MS.gene021695:CDS | 20.0% |
!! | TTATGAAAGAATATAAGTGT+TGG | - | chr7.4:89039979-89039998 | MS.gene021695:CDS | 20.0% |
!!! | AGCATTTGATTTCATTTTTT+AGG | - | chr7.4:89039876-89039895 | MS.gene021695:CDS | 20.0% |
!!! | ATTAAATTTAGGACATAAGT+TGG | - | chr7.4:89039916-89039935 | MS.gene021695:CDS | 20.0% |
!!! | ATTAGCAAATCCTTTTTTTT+AGG | + | chr7.4:89040087-89040106 | None:intergenic | 20.0% |
!!! | TTAGCAAATCCTTTTTTTTA+GGG | + | chr7.4:89040086-89040105 | None:intergenic | 20.0% |
!!! | TTTTGTGGATTAATTTTTCA+GGG | - | chr7.4:89039646-89039665 | MS.gene021695:CDS | 20.0% |
!!! | TTTTTGTGGATTAATTTTTC+AGG | - | chr7.4:89039645-89039664 | MS.gene021695:CDS | 20.0% |
! | AACATTTATGATGTAACAGA+TGG | - | chr7.4:89040230-89040249 | MS.gene021695:intron | 25.0% |
! | ACATTTATGATGTAACAGAT+GGG | - | chr7.4:89040231-89040250 | MS.gene021695:intron | 25.0% |
! | ACTTCAAACAGATATTCAAA+TGG | - | chr7.4:89040432-89040451 | MS.gene021695:intron | 25.0% |
! | AGGGATATTTAAATCCATTT+AGG | + | chr7.4:89040067-89040086 | None:intergenic | 25.0% |
! | GAAAAATCCAATCAAATCAT+CGG | - | chr7.4:89040621-89040640 | MS.gene021695:intron | 25.0% |
! | GAAAATGAGTTACTATTTGT+AGG | + | chr7.4:89040523-89040542 | None:intergenic | 25.0% |
! | GAAACATTTGAATCTTTGTT+TGG | - | chr7.4:89040730-89040749 | MS.gene021695:intron | 25.0% |
! | TAGGGACACAAATTAAAAAT+AGG | + | chr7.4:89040014-89040033 | None:intergenic | 25.0% |
! | TATATTAGACTTGTCCTAAA+TGG | - | chr7.4:89040050-89040069 | MS.gene021695:CDS | 25.0% |
!!! | TTCAAGATCTTTTAGGAAAT+AGG | - | chr7.4:89039775-89039794 | MS.gene021695:CDS | 25.0% |
AACATAGCTCGTTTACTAAA+AGG | - | chr7.4:89040592-89040611 | MS.gene021695:intron | 30.0% | |
ATGTCATTATCTGTTCTTTG+TGG | + | chr7.4:89040277-89040296 | None:intergenic | 30.0% | |
CATTTCTCAAGCAAAGAAAA+GGG | + | chr7.4:89040874-89040893 | None:intergenic | 30.0% | |
TATGAACTATTAACCTGTCT+TGG | + | chr7.4:89039393-89039412 | None:intergenic | 30.0% | |
TTATGATTCACATGTCTAAC+TGG | - | chr7.4:89040205-89040224 | MS.gene021695:intron | 30.0% | |
TTCCTAAAAGATCTTGAAGA+TGG | + | chr7.4:89039773-89039792 | None:intergenic | 30.0% | |
! | ATCCATCTTCAAGATCTTTT+AGG | - | chr7.4:89039768-89039787 | MS.gene021695:CDS | 30.0% |
!! | TTAGATGGACTAATTACCTA+AGG | - | chr7.4:89039697-89039716 | MS.gene021695:CDS | 30.0% |
!!! | TGCTTCATTAAGTGCTTTTT+TGG | + | chr7.4:89040458-89040477 | None:intergenic | 30.0% |
!!! | TTTGTTTGGTTTTGAACCTT+TGG | - | chr7.4:89040744-89040763 | MS.gene021695:intron | 30.0% |
AAAGAATTCCAAGAGGTCAA+TGG | - | chr7.4:89040401-89040420 | MS.gene021695:intron | 35.0% | |
AACTATTAACCTGTCTTGGT+TGG | + | chr7.4:89039389-89039408 | None:intergenic | 35.0% | |
AAGAATTCCAAGAGGTCAAT+GGG | - | chr7.4:89040402-89040421 | MS.gene021695:intron | 35.0% | |
AAGCTCAAGAAATCACAAAC+AGG | - | chr7.4:89040328-89040347 | MS.gene021695:intron | 35.0% | |
CATTATCTGTTCTTTGTGGA+AGG | + | chr7.4:89040273-89040292 | None:intergenic | 35.0% | |
CCATTTCTCAAGCAAAGAAA+AGG | + | chr7.4:89040875-89040894 | None:intergenic | 35.0% | |
GTACTAACCGATGATTTGAT+TGG | + | chr7.4:89040631-89040650 | None:intergenic | 35.0% | |
TAGCTCGTTTACTAAAAGGT+TGG | - | chr7.4:89040596-89040615 | MS.gene021695:intron | 35.0% | |
TAGGAAAATCATGATCCAAG+AGG | - | chr7.4:89039496-89039515 | MS.gene021695:CDS | 35.0% | |
! | CCTTTTCTTTGCTTGAGAAA+TGG | - | chr7.4:89040872-89040891 | MS.gene021695:intron | 35.0% |
! | TCACAACCTAATACCTTTTC+AGG | + | chr7.4:89040919-89040938 | None:intergenic | 35.0% |
! | TTTTCTTCCACTAAAGAACC+AGG | - | chr7.4:89040538-89040557 | MS.gene021695:intron | 35.0% |
!! | AGTTGTCCTGAAAAGGTATT+AGG | - | chr7.4:89040910-89040929 | MS.gene021695:intron | 35.0% |
!! | GAAAAGGTATTAGGTTGTGA+TGG | - | chr7.4:89040919-89040938 | MS.gene021695:intron | 35.0% |
!!! | TTTTGAACCTTTGGAGTCTT+TGG | - | chr7.4:89040753-89040772 | MS.gene021695:intron | 35.0% |
ATGATCAACAACAGTCCTCT+TGG | + | chr7.4:89039514-89039533 | None:intergenic | 40.0% | |
ATTGTTTCCGAACCAACATC+AGG | + | chr7.4:89040850-89040869 | None:intergenic | 40.0% | |
GATGAAAGTAAGCCTGATGT+TGG | - | chr7.4:89040835-89040854 | MS.gene021695:intron | 40.0% | |
GCAAAAGTTGCAGACTTAGA+TGG | - | chr7.4:89039682-89039701 | MS.gene021695:CDS | 40.0% | |
GCATAGCAAAAAGATTGACC+TGG | + | chr7.4:89040559-89040578 | None:intergenic | 40.0% | |
GCATCTCAAAGAATTCCAAG+AGG | - | chr7.4:89040394-89040413 | MS.gene021695:intron | 40.0% | |
GGCAGAATCAAAGTTGTTGA+AGG | + | chr7.4:89040677-89040696 | None:intergenic | 40.0% | |
TGAAGCAAGTTGTCCTGAAA+AGG | - | chr7.4:89040903-89040922 | MS.gene021695:intron | 40.0% | |
TTTGATTCTGCCTCTAGTAG+TGG | - | chr7.4:89040685-89040704 | MS.gene021695:intron | 40.0% | |
! | AAGTAAGCCTGATGTTGGTT+CGG | - | chr7.4:89040840-89040859 | MS.gene021695:intron | 40.0% |
! | AGATTGACCTGGTTCTTTAG+TGG | + | chr7.4:89040548-89040567 | None:intergenic | 40.0% |
!! | AAGTTACCCCTTTTGATTCC+TGG | + | chr7.4:89039723-89039742 | None:intergenic | 40.0% |
ACCCTTTGTTCCACTACTAG+AGG | + | chr7.4:89040698-89040717 | None:intergenic | 45.0% | |
ACCTAAGGCCAGGAATCAAA+AGG | - | chr7.4:89039712-89039731 | MS.gene021695:CDS | 45.0% | |
ATCTTTGTCACCAGACGCAA+CGG | - | chr7.4:89040804-89040823 | MS.gene021695:CDS | 45.0% | |
CCTAAGGCCAGGAATCAAAA+GGG | - | chr7.4:89039713-89039732 | MS.gene021695:CDS | 45.0% | |
CTAAGGCCAGGAATCAAAAG+GGG | - | chr7.4:89039714-89039733 | MS.gene021695:CDS | 45.0% | |
CTTCTTTCCCATTGACCTCT+TGG | + | chr7.4:89040412-89040431 | None:intergenic | 45.0% | |
GATGACTCCAAAGACTCCAA+AGG | + | chr7.4:89040763-89040782 | None:intergenic | 45.0% | |
GGGTAACTTCACTGAACAAG+AGG | - | chr7.4:89039734-89039753 | MS.gene021695:CDS | 45.0% | |
TCTTGTAAAACCGTTGCGTC+TGG | + | chr7.4:89040817-89040836 | None:intergenic | 45.0% | |
TGGACTAATTACCTAAGGCC+AGG | - | chr7.4:89039702-89039721 | MS.gene021695:CDS | 45.0% | |
! | GCCTCTAGTAGTGGAACAAA+GGG | - | chr7.4:89040694-89040713 | MS.gene021695:intron | 45.0% |
! | TGCCTCTAGTAGTGGAACAA+AGG | - | chr7.4:89040693-89040712 | MS.gene021695:intron | 45.0% |
!! | TTCATTAAAATTATATTTAT+TGG | - | chr7.4:89039435-89039454 | MS.gene021695:CDS | 5.0% |
!!! | AAATTTAATTTTACAAAAAT+TGG | + | chr7.4:89039905-89039924 | None:intergenic | 5.0% |
!!! | ATTTTTGTAAAATTAAATTT+AGG | - | chr7.4:89039905-89039924 | MS.gene021695:CDS | 5.0% |
!! | CCCTTTTGATTCCTGGCCTT+AGG | + | chr7.4:89039716-89039735 | None:intergenic | 50.0% |
AGGGCTGTTCCAACCAAGAC+AGG | - | chr7.4:89039377-89039396 | MS.gene021695:CDS | 55.0% | |
GGAACAGCCCTCCAATTTCC+AGG | + | chr7.4:89039368-89039387 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 89039360 | 89040963 | 89039360 | ID=MS.gene021695 |
chr7.4 | mRNA | 89039360 | 89040963 | 89039360 | ID=MS.gene021695.t1;Parent=MS.gene021695 |
chr7.4 | exon | 89040925 | 89040963 | 89040925 | ID=MS.gene021695.t1.exon1;Parent=MS.gene021695.t1 |
chr7.4 | CDS | 89040925 | 89040963 | 89040925 | ID=cds.MS.gene021695.t1;Parent=MS.gene021695.t1 |
chr7.4 | exon | 89040775 | 89040824 | 89040775 | ID=MS.gene021695.t1.exon2;Parent=MS.gene021695.t1 |
chr7.4 | CDS | 89040775 | 89040824 | 89040775 | ID=cds.MS.gene021695.t1;Parent=MS.gene021695.t1 |
chr7.4 | exon | 89039360 | 89040074 | 89039360 | ID=MS.gene021695.t1.exon3;Parent=MS.gene021695.t1 |
chr7.4 | CDS | 89039360 | 89040074 | 89039360 | ID=cds.MS.gene021695.t1;Parent=MS.gene021695.t1 |
Gene Sequence |
Protein sequence |