Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021729.t1 | AES77465.1 | 82.1 | 487 | 76 | 3 | 1 | 477 | 1 | 486 | 1.60E-217 | 765.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021729.t1 | Q93ZL5 | 41.2 | 381 | 148 | 9 | 124 | 477 | 126 | 457 | 3.3e-54 | 214.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021729.t1 | G7L202 | 82.1 | 487 | 76 | 3 | 1 | 477 | 1 | 486 | 1.1e-217 | 765.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene021729.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021729.t1 | MTR_7g010950 | 89.117 | 487 | 42 | 3 | 1 | 477 | 1 | 486 | 0.0 | 869 |
MS.gene021729.t1 | MTR_6g012450 | 56.313 | 499 | 192 | 10 | 1 | 477 | 1 | 495 | 5.96e-170 | 488 |
MS.gene021729.t1 | MTR_4g082060 | 42.857 | 497 | 228 | 12 | 1 | 475 | 1 | 463 | 1.22e-111 | 338 |
MS.gene021729.t1 | MTR_3g435480 | 39.847 | 522 | 212 | 19 | 1 | 477 | 1 | 465 | 4.06e-89 | 280 |
MS.gene021729.t1 | MTR_5g041530 | 37.654 | 486 | 181 | 15 | 4 | 475 | 2 | 379 | 1.09e-69 | 227 |
MS.gene021729.t1 | MTR_8g044220 | 34.888 | 493 | 239 | 21 | 3 | 476 | 9 | 438 | 1.93e-66 | 220 |
MS.gene021729.t1 | MTR_5g041400 | 35.579 | 475 | 188 | 18 | 4 | 475 | 2 | 361 | 1.12e-65 | 216 |
MS.gene021729.t1 | MTR_5g041380 | 35.041 | 488 | 181 | 20 | 4 | 475 | 2 | 369 | 6.82e-62 | 206 |
MS.gene021729.t1 | MTR_7g086780 | 34.651 | 430 | 195 | 14 | 78 | 476 | 47 | 421 | 2.79e-50 | 177 |
MS.gene021729.t1 | MTR_5g041420 | 41.434 | 251 | 119 | 7 | 6 | 238 | 4 | 244 | 3.52e-40 | 147 |
MS.gene021729.t1 | MTR_6g027460 | 37.282 | 287 | 97 | 10 | 2 | 253 | 7 | 245 | 9.87e-40 | 147 |
MS.gene021729.t1 | MTR_6g027450 | 64.211 | 95 | 34 | 0 | 95 | 189 | 48 | 142 | 4.79e-37 | 139 |
MS.gene021729.t1 | MTR_2g016030 | 83.333 | 60 | 10 | 0 | 130 | 189 | 41 | 100 | 3.36e-33 | 123 |
MS.gene021729.t1 | MTR_3g091820 | 66.667 | 60 | 20 | 0 | 133 | 192 | 40 | 99 | 1.44e-24 | 103 |
MS.gene021729.t1 | MTR_8g079060 | 68.966 | 58 | 18 | 0 | 136 | 193 | 29 | 86 | 2.09e-24 | 101 |
MS.gene021729.t1 | MTR_8g027295 | 66.102 | 59 | 20 | 0 | 131 | 189 | 19 | 77 | 5.00e-24 | 101 |
MS.gene021729.t1 | MTR_8g479350 | 75.472 | 53 | 13 | 0 | 138 | 190 | 70 | 122 | 5.20e-24 | 103 |
MS.gene021729.t1 | MTR_2g093220 | 56.098 | 82 | 28 | 1 | 108 | 189 | 20 | 93 | 6.04e-24 | 102 |
MS.gene021729.t1 | MTR_4g109980 | 71.698 | 53 | 15 | 0 | 134 | 186 | 38 | 90 | 6.14e-24 | 102 |
MS.gene021729.t1 | MTR_1g056810 | 59.211 | 76 | 30 | 1 | 131 | 205 | 6 | 81 | 7.25e-24 | 101 |
MS.gene021729.t1 | MTR_8g015840 | 73.077 | 52 | 14 | 0 | 136 | 187 | 20 | 71 | 8.87e-24 | 99.8 |
MS.gene021729.t1 | MTR_2g059540 | 75.510 | 49 | 12 | 0 | 136 | 184 | 31 | 79 | 1.22e-23 | 99.0 |
MS.gene021729.t1 | MTR_4g022370 | 61.290 | 62 | 24 | 0 | 128 | 189 | 74 | 135 | 1.29e-23 | 102 |
MS.gene021729.t1 | MTR_4g088580 | 47.222 | 108 | 41 | 3 | 93 | 189 | 6 | 108 | 1.44e-23 | 102 |
MS.gene021729.t1 | MTR_2g096740 | 66.667 | 57 | 19 | 0 | 138 | 194 | 64 | 120 | 2.26e-23 | 100 |
MS.gene021729.t1 | MTR_7g024670 | 41.176 | 119 | 68 | 2 | 86 | 203 | 28 | 145 | 2.33e-23 | 101 |
MS.gene021729.t1 | MTR_2g096740 | 66.667 | 57 | 19 | 0 | 138 | 194 | 79 | 135 | 2.52e-23 | 100 |
MS.gene021729.t1 | MTR_4g461080 | 66.154 | 65 | 21 | 1 | 125 | 188 | 17 | 81 | 3.75e-23 | 99.4 |
MS.gene021729.t1 | MTR_8g068210 | 52.000 | 75 | 36 | 0 | 115 | 189 | 11 | 85 | 4.04e-23 | 100 |
MS.gene021729.t1 | MTR_3g090430 | 68.421 | 57 | 17 | 1 | 134 | 189 | 48 | 104 | 9.47e-23 | 99.4 |
MS.gene021729.t1 | MTR_1g077600 | 67.925 | 53 | 17 | 0 | 136 | 188 | 43 | 95 | 9.96e-23 | 97.8 |
MS.gene021729.t1 | MTR_1g077600 | 67.925 | 53 | 17 | 0 | 136 | 188 | 43 | 95 | 1.12e-22 | 98.2 |
MS.gene021729.t1 | MTR_4g063780 | 63.333 | 60 | 22 | 0 | 129 | 188 | 68 | 127 | 1.59e-22 | 98.6 |
MS.gene021729.t1 | MTR_2g013370 | 74.074 | 54 | 13 | 1 | 136 | 189 | 46 | 98 | 7.60e-22 | 95.5 |
MS.gene021729.t1 | MTR_4g089095 | 69.231 | 52 | 16 | 0 | 138 | 189 | 52 | 103 | 9.03e-22 | 95.9 |
MS.gene021729.t1 | MTR_5g031440 | 65.455 | 55 | 19 | 0 | 132 | 186 | 39 | 93 | 9.20e-22 | 96.7 |
MS.gene021729.t1 | MTR_4g089095 | 69.231 | 52 | 16 | 0 | 138 | 189 | 18 | 69 | 1.21e-21 | 94.7 |
MS.gene021729.t1 | MTR_2g014060 | 72.000 | 50 | 14 | 0 | 138 | 187 | 27 | 76 | 1.51e-21 | 95.9 |
MS.gene021729.t1 | MTR_2g014170 | 73.469 | 49 | 13 | 0 | 136 | 184 | 45 | 93 | 2.11e-21 | 95.1 |
MS.gene021729.t1 | MTR_7g059400 | 69.231 | 52 | 16 | 0 | 138 | 189 | 78 | 129 | 2.28e-21 | 95.5 |
MS.gene021729.t1 | MTR_3g077750 | 59.091 | 66 | 26 | 1 | 122 | 186 | 46 | 111 | 4.58e-21 | 94.4 |
MS.gene021729.t1 | MTR_3g118510 | 80.435 | 46 | 5 | 1 | 61 | 106 | 29 | 70 | 1.42e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021729.t1 | AT5G39660 | 41.051 | 514 | 202 | 19 | 6 | 477 | 3 | 457 | 1.03e-89 | 281 |
MS.gene021729.t1 | AT5G39660 | 41.051 | 514 | 202 | 19 | 6 | 477 | 3 | 457 | 1.03e-89 | 281 |
MS.gene021729.t1 | AT5G39660 | 41.051 | 514 | 202 | 19 | 6 | 477 | 3 | 457 | 1.03e-89 | 281 |
MS.gene021729.t1 | AT3G47500 | 41.093 | 494 | 223 | 23 | 1 | 475 | 2 | 446 | 1.51e-81 | 260 |
MS.gene021729.t1 | AT5G62430 | 38.095 | 378 | 122 | 16 | 108 | 475 | 21 | 296 | 3.02e-55 | 186 |
MS.gene021729.t1 | AT1G69570 | 33.065 | 496 | 212 | 20 | 1 | 476 | 1 | 396 | 2.38e-50 | 176 |
MS.gene021729.t1 | AT1G26790 | 31.263 | 499 | 186 | 24 | 1 | 476 | 7 | 371 | 1.96e-38 | 144 |
MS.gene021729.t1 | AT1G29160 | 85.000 | 60 | 9 | 0 | 130 | 189 | 56 | 115 | 5.58e-35 | 129 |
MS.gene021729.t1 | AT2G34140 | 81.667 | 60 | 11 | 0 | 130 | 189 | 52 | 111 | 4.37e-33 | 123 |
MS.gene021729.t1 | AT5G60200 | 58.333 | 72 | 30 | 0 | 132 | 203 | 51 | 122 | 1.95e-25 | 105 |
MS.gene021729.t1 | AT3G45610 | 45.263 | 95 | 52 | 0 | 101 | 195 | 5 | 99 | 4.13e-25 | 103 |
MS.gene021729.t1 | AT5G60850 | 73.214 | 56 | 15 | 0 | 136 | 191 | 51 | 106 | 5.69e-25 | 105 |
MS.gene021729.t1 | AT1G51700 | 68.421 | 57 | 18 | 0 | 136 | 192 | 33 | 89 | 1.88e-24 | 100 |
MS.gene021729.t1 | AT3G61850 | 60.870 | 69 | 27 | 0 | 124 | 192 | 50 | 118 | 2.99e-24 | 102 |
MS.gene021729.t1 | AT3G61850 | 60.870 | 69 | 27 | 0 | 124 | 192 | 50 | 118 | 2.99e-24 | 102 |
MS.gene021729.t1 | AT3G61850 | 60.870 | 69 | 27 | 0 | 124 | 192 | 62 | 130 | 3.58e-24 | 102 |
MS.gene021729.t1 | AT3G61850 | 60.870 | 69 | 27 | 0 | 124 | 192 | 50 | 118 | 5.06e-24 | 102 |
MS.gene021729.t1 | AT3G61850 | 60.870 | 69 | 27 | 0 | 124 | 192 | 62 | 130 | 5.49e-24 | 102 |
MS.gene021729.t1 | AT3G50410 | 68.966 | 58 | 18 | 0 | 136 | 193 | 30 | 87 | 7.17e-24 | 100 |
MS.gene021729.t1 | AT3G55370 | 65.000 | 60 | 21 | 0 | 132 | 191 | 72 | 131 | 1.30e-23 | 101 |
MS.gene021729.t1 | AT3G21270 | 76.471 | 51 | 12 | 0 | 138 | 188 | 31 | 81 | 1.31e-23 | 98.6 |
MS.gene021729.t1 | AT3G55370 | 65.000 | 60 | 21 | 0 | 132 | 191 | 72 | 131 | 1.35e-23 | 102 |
MS.gene021729.t1 | AT4G24060 | 68.421 | 57 | 18 | 0 | 133 | 189 | 50 | 106 | 1.42e-23 | 102 |
MS.gene021729.t1 | AT3G55370 | 65.000 | 60 | 21 | 0 | 132 | 191 | 117 | 176 | 1.58e-23 | 102 |
MS.gene021729.t1 | AT1G07640 | 68.333 | 60 | 18 | 1 | 138 | 196 | 23 | 82 | 1.74e-23 | 100 |
MS.gene021729.t1 | AT2G28510 | 67.797 | 59 | 19 | 0 | 138 | 196 | 50 | 108 | 1.77e-23 | 100 |
MS.gene021729.t1 | AT1G07640 | 68.333 | 60 | 18 | 1 | 138 | 196 | 79 | 138 | 2.73e-23 | 100 |
MS.gene021729.t1 | AT1G07640 | 68.333 | 60 | 18 | 1 | 138 | 196 | 87 | 146 | 3.51e-23 | 100 |
MS.gene021729.t1 | AT4G38000 | 55.844 | 77 | 29 | 2 | 135 | 210 | 40 | 112 | 4.48e-23 | 98.6 |
MS.gene021729.t1 | AT2G28810 | 62.295 | 61 | 23 | 0 | 127 | 187 | 68 | 128 | 5.36e-23 | 99.8 |
MS.gene021729.t1 | AT2G37590 | 56.061 | 66 | 29 | 0 | 124 | 189 | 77 | 142 | 6.63e-23 | 99.8 |
MS.gene021729.t1 | AT5G66940 | 35.393 | 178 | 90 | 6 | 136 | 290 | 32 | 207 | 6.97e-23 | 97.4 |
MS.gene021729.t1 | AT2G28810 | 62.295 | 61 | 23 | 0 | 127 | 187 | 85 | 145 | 8.04e-23 | 99.8 |
MS.gene021729.t1 | AT1G28310 | 72.222 | 54 | 15 | 0 | 136 | 189 | 27 | 80 | 1.07e-22 | 99.0 |
MS.gene021729.t1 | AT1G28310 | 72.222 | 54 | 15 | 0 | 136 | 189 | 51 | 104 | 1.74e-22 | 98.6 |
MS.gene021729.t1 | AT5G65590 | 67.857 | 56 | 18 | 0 | 136 | 191 | 41 | 96 | 2.20e-22 | 97.8 |
MS.gene021729.t1 | AT3G52440 | 43.299 | 97 | 49 | 2 | 110 | 200 | 12 | 108 | 2.21e-22 | 97.1 |
MS.gene021729.t1 | AT1G64620 | 67.308 | 52 | 17 | 0 | 133 | 184 | 46 | 97 | 2.78e-22 | 98.2 |
MS.gene021729.t1 | AT3G52440 | 57.353 | 68 | 28 | 1 | 134 | 200 | 22 | 89 | 3.25e-22 | 95.9 |
MS.gene021729.t1 | AT1G21340 | 64.286 | 56 | 20 | 0 | 138 | 193 | 40 | 95 | 4.12e-22 | 95.9 |
MS.gene021729.t1 | AT1G47655 | 71.429 | 49 | 14 | 0 | 136 | 184 | 29 | 77 | 1.11e-21 | 93.6 |
MS.gene021729.t1 | AT4G00940 | 64.407 | 59 | 21 | 0 | 131 | 189 | 63 | 121 | 1.21e-21 | 95.5 |
MS.gene021729.t1 | AT4G00940 | 64.407 | 59 | 21 | 0 | 131 | 189 | 63 | 121 | 1.21e-21 | 95.5 |
MS.gene021729.t1 | AT4G00940 | 64.407 | 59 | 21 | 0 | 131 | 189 | 63 | 121 | 1.21e-21 | 95.5 |
MS.gene021729.t1 | AT5G02460 | 63.793 | 58 | 21 | 0 | 132 | 189 | 91 | 148 | 1.80e-21 | 96.7 |
MS.gene021729.t1 | AT2G46590 | 42.268 | 97 | 55 | 1 | 87 | 183 | 20 | 115 | 3.39e-21 | 95.1 |
MS.gene021729.t1 | AT2G46590 | 42.268 | 97 | 55 | 1 | 87 | 183 | 32 | 127 | 4.12e-21 | 95.1 |
MS.gene021729.t1 | AT4G21050 | 58.209 | 67 | 28 | 0 | 123 | 189 | 11 | 77 | 5.36e-21 | 91.7 |
MS.gene021729.t1 | AT5G62940 | 62.295 | 61 | 22 | 1 | 127 | 186 | 63 | 123 | 3.11e-20 | 92.8 |
MS.gene021729.t1 | AT4G21040 | 62.264 | 53 | 20 | 0 | 138 | 190 | 27 | 79 | 2.43e-18 | 84.3 |
MS.gene021729.t1 | AT4G21080 | 60.377 | 53 | 21 | 0 | 138 | 190 | 27 | 79 | 1.31e-17 | 82.8 |
MS.gene021729.t1 | AT4G21030 | 59.091 | 44 | 18 | 0 | 138 | 181 | 23 | 66 | 1.52e-11 | 63.9 |
Find 110 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAACATGAATTTCTGAAAT+TGG | 0.133092 | 7.4:+88323617 | None:intergenic |
CATTCTATCCTGCAACTTAT+TGG | 0.150210 | 7.4:-88321400 | MS.gene021729:CDS |
ATTCTATCCTGCAACTTATT+GGG | 0.232977 | 7.4:-88321399 | MS.gene021729:CDS |
TCCTCCGCGAAGACTCTTTC+AGG | 0.296594 | 7.4:-88321099 | MS.gene021729:CDS |
GCAAGAACTGCCAGAGATAT+TGG | 0.302290 | 7.4:-88321913 | MS.gene021729:CDS |
GAGAGTTTGTAGTAGAGTTA+TGG | 0.354581 | 7.4:+88321309 | None:intergenic |
GACTCTGCGATCAAACTGTT+TGG | 0.377035 | 7.4:-88323650 | MS.gene021729:CDS |
CAATGTAGCAACCTCCCTTT+CGG | 0.382427 | 7.4:+88322096 | None:intergenic |
AGCTCTTTCTGGACAACCCT+TGG | 0.392158 | 7.4:-88321149 | MS.gene021729:CDS |
ATCCTCCCCTTGTTCTTCAC+TGG | 0.395303 | 7.4:+88321634 | None:intergenic |
GTGCAAAATTACACAAGAAA+TGG | 0.400392 | 7.4:-88321698 | MS.gene021729:CDS |
TGCACCTTCCGTCGACTTTG+TGG | 0.406190 | 7.4:+88321586 | None:intergenic |
CCTTGTTCTTCACTGGTATG+AGG | 0.408705 | 7.4:+88321641 | None:intergenic |
CTCCCTTGAATGTTTACCTA+AGG | 0.416607 | 7.4:+88321283 | None:intergenic |
CTTGAATGTTTACCTAAGGT+TGG | 0.421534 | 7.4:+88321287 | None:intergenic |
AACGGTACAATCCTTACATT+TGG | 0.421611 | 7.4:-88321779 | MS.gene021729:CDS |
TCAGTTCTAGAAGTTGCATC+TGG | 0.425578 | 7.4:+88322142 | None:intergenic |
CAACCTTAGGTAAACATTCA+AGG | 0.427611 | 7.4:-88321286 | MS.gene021729:CDS |
AAGCGACACTTCAGAATTCT+CGG | 0.433945 | 7.4:-88321823 | MS.gene021729:CDS |
TTCAAAGACCGAAGAAGAAC+AGG | 0.434370 | 7.4:-88322068 | MS.gene021729:CDS |
TGTCTCGTCCTGTTCTTCTT+CGG | 0.435826 | 7.4:+88322060 | None:intergenic |
GTACAACCCCAATAAGTTGC+AGG | 0.438881 | 7.4:+88321392 | None:intergenic |
TGTGGTTTCCTAAAACTTTG+AGG | 0.440466 | 7.4:-88321199 | MS.gene021729:CDS |
TCATGAATCCAGAACACAAC+GGG | 0.441078 | 7.4:-88322232 | MS.gene021729:intron |
CCTAGACAATGCCGCCGGAT+TGG | 0.441868 | 7.4:+88321016 | None:intergenic |
GAGTTATGGTTTGCACCATT+CGG | 0.443392 | 7.4:+88321323 | None:intergenic |
TTTCTGCGACCGGCACCTAC+TGG | 0.444047 | 7.4:+88321863 | None:intergenic |
GCTCTTTCTGGACAACCCTT+GGG | 0.447364 | 7.4:-88321148 | MS.gene021729:CDS |
CACCTTGTGGTGGGAAGCTA+TGG | 0.449902 | 7.4:+88321525 | None:intergenic |
TTCAGTCTTGCAAGCCAATC+CGG | 0.451150 | 7.4:-88321030 | MS.gene021729:CDS |
TTCTATCCTGCAACTTATTG+GGG | 0.466905 | 7.4:-88321398 | MS.gene021729:CDS |
CACCGGCAGTCCAATATCTC+TGG | 0.470878 | 7.4:+88321903 | None:intergenic |
CTCGTTTGCATCGGATTCCA+TGG | 0.476868 | 7.4:+88321470 | None:intergenic |
GCAGTTCTTGCAGAAATGAC+GGG | 0.478653 | 7.4:+88321925 | None:intergenic |
GATTGTACCGTTGCATTTCA+AGG | 0.479174 | 7.4:+88321790 | None:intergenic |
CAATAAGTTGCAGGATAGAA+TGG | 0.479650 | 7.4:+88321401 | None:intergenic |
GGAAAATCCTGATGGACAAA+AGG | 0.486001 | 7.4:+88321427 | None:intergenic |
CCAATCCGGCGGCATTGTCT+AGG | 0.494145 | 7.4:-88321016 | MS.gene021729:CDS |
CCAATTTCAGAAATTCATGT+TGG | 0.497810 | 7.4:-88323617 | MS.gene021729:CDS |
GATGGACAAAAGGCCGGTGG+TGG | 0.498700 | 7.4:+88321437 | None:intergenic |
ACTACAAACTCTCCAACCTT+AGG | 0.501563 | 7.4:-88321299 | MS.gene021729:CDS |
GGCAGTTCTTGCAGAAATGA+CGG | 0.505612 | 7.4:+88321924 | None:intergenic |
ATCAGTGAGCTCGTTTGCAT+CGG | 0.516857 | 7.4:+88321461 | None:intergenic |
CGTGGAATGTTCCATGCACT+TGG | 0.517020 | 7.4:+88321365 | None:intergenic |
GTGAGTTGGATCCAAATGTA+AGG | 0.517691 | 7.4:+88321768 | None:intergenic |
AGCTTGTTCTTGAGATACAT+TGG | 0.519714 | 7.4:+88321559 | None:intergenic |
TTGTCCTCGTTGTAGTAGCA+TGG | 0.523986 | 7.4:-88321990 | MS.gene021729:CDS |
TGCCAGAGATATTGGACTGC+CGG | 0.524544 | 7.4:-88321905 | MS.gene021729:CDS |
ACCTACTGGTACGTTTCTCA+TGG | 0.524953 | 7.4:+88321877 | None:intergenic |
TACCGTTGCATTTCAAGGAA+GGG | 0.526711 | 7.4:+88321795 | None:intergenic |
TACGTTTCTCATGGTTCCAC+CGG | 0.531107 | 7.4:+88321886 | None:intergenic |
TGAATCACATAAAGGTGAGT+TGG | 0.531921 | 7.4:+88321754 | None:intergenic |
GATGCCACTGAATCACATAA+AGG | 0.533836 | 7.4:+88321746 | None:intergenic |
GTACCGTTGCATTTCAAGGA+AGG | 0.535966 | 7.4:+88321794 | None:intergenic |
TCTTGCAGAAATGACGGGGT+TGG | 0.542522 | 7.4:+88321930 | None:intergenic |
TTTGCACCATTCGGTGATGA+TGG | 0.554189 | 7.4:+88321332 | None:intergenic |
GGAAAATAGCCACCTTGTGG+TGG | 0.564170 | 7.4:+88321515 | None:intergenic |
CACCCTTCCTTGAAATGCAA+CGG | 0.569292 | 7.4:-88321797 | MS.gene021729:CDS |
TTGTTCTTGAGATACATTGG+TGG | 0.575585 | 7.4:+88321562 | None:intergenic |
GAACTCCTTGGCATTTACCA+TGG | 0.576696 | 7.4:-88321487 | MS.gene021729:CDS |
CAAGAACAAGCTATGTGGAA+TGG | 0.577149 | 7.4:-88321548 | MS.gene021729:CDS |
AACCTTAGGTAAACATTCAA+GGG | 0.580141 | 7.4:-88321285 | MS.gene021729:CDS |
CTCACCTTTATGTGATTCAG+TGG | 0.580504 | 7.4:-88321750 | MS.gene021729:CDS |
ATTCTTCTGTTGATTGTGCA+AGG | 0.584727 | 7.4:+88322173 | None:intergenic |
AATGCCTGAAAGAGTCTTCG+CGG | 0.584851 | 7.4:+88321095 | None:intergenic |
AATGGCATGGAAAATCCTGA+TGG | 0.590674 | 7.4:+88321419 | None:intergenic |
TATCTCAAGAACAAGCTATG+TGG | 0.592377 | 7.4:-88321553 | MS.gene021729:CDS |
TGTTACAGTATCCACCGAAA+GGG | 0.593158 | 7.4:-88322110 | MS.gene021729:CDS |
CAAGTGCATGGAACATTCCA+CGG | 0.594597 | 7.4:-88321364 | MS.gene021729:CDS |
CCTCATACCAGTGAAGAACA+AGG | 0.595660 | 7.4:-88321641 | MS.gene021729:CDS |
GGCCATAGCTTCCCACCACA+AGG | 0.598341 | 7.4:-88321527 | MS.gene021729:CDS |
AATCCTGATGGACAAAAGGC+CGG | 0.603585 | 7.4:+88321431 | None:intergenic |
GGATCAATCAAATAAATCGT+CGG | 0.604223 | 7.4:-88321615 | MS.gene021729:CDS |
ACCTTCCGTCGACTTTGTGG+AGG | 0.610776 | 7.4:+88321589 | None:intergenic |
GGATTCCATGGTAAATGCCA+AGG | 0.611774 | 7.4:+88321482 | None:intergenic |
CTGTTACAGTATCCACCGAA+AGG | 0.612746 | 7.4:-88322111 | MS.gene021729:CDS |
CTAAAATCAAGCGAAGGAGA+TGG | 0.613491 | 7.4:-88321251 | MS.gene021729:CDS |
TGTAGCAACCTCCCTTTCGG+TGG | 0.614289 | 7.4:+88322099 | None:intergenic |
GAAAATAGCCACCTTGTGGT+GGG | 0.619044 | 7.4:+88321516 | None:intergenic |
GATGATGGTTGTGCTTGCCG+TGG | 0.621977 | 7.4:+88321347 | None:intergenic |
ATGCTACTACAACGAGGACA+AGG | 0.624918 | 7.4:+88321992 | None:intergenic |
AGTTGCAGGATAGAATGGCA+TGG | 0.625575 | 7.4:+88321406 | None:intergenic |
GAGCTCACTGATTCCACCAC+CGG | 0.627819 | 7.4:-88321450 | MS.gene021729:CDS |
CAGTTCTTGCAGAAATGACG+GGG | 0.628674 | 7.4:+88321926 | None:intergenic |
GTTGTACTATGCCAAGTGCA+TGG | 0.629999 | 7.4:-88321376 | MS.gene021729:CDS |
TAAGCGAAGAAAAGAGCTTG+TGG | 0.632631 | 7.4:-88321217 | MS.gene021729:CDS |
TACCAGTGAAGAACAAGGGG+AGG | 0.634191 | 7.4:-88321636 | MS.gene021729:CDS |
TACAGTATCCACCGAAAGGG+AGG | 0.634842 | 7.4:-88322107 | MS.gene021729:CDS |
ACCTCCACAAAGTCGACGGA+AGG | 0.636006 | 7.4:-88321590 | MS.gene021729:CDS |
ACAAGAACATGAGATTGAGA+AGG | 0.637128 | 7.4:-88323507 | MS.gene021729:intron |
AACATGCTAAAATCAAGCGA+AGG | 0.639475 | 7.4:-88321257 | MS.gene021729:CDS |
CTCATACCAGTGAAGAACAA+GGG | 0.644364 | 7.4:-88321640 | MS.gene021729:CDS |
TCATACCAGTGAAGAACAAG+GGG | 0.646136 | 7.4:-88321639 | MS.gene021729:CDS |
AGAAACGTACCAGTAGGTGC+CGG | 0.653444 | 7.4:-88321872 | MS.gene021729:CDS |
AGCGACCTAGACAATGCCGC+CGG | 0.655136 | 7.4:+88321011 | None:intergenic |
TTTGAGGATCGATGACTCAG+AGG | 0.659653 | 7.4:-88321183 | MS.gene021729:CDS |
CAGAGATATTGGACTGCCGG+TGG | 0.661022 | 7.4:-88321902 | MS.gene021729:CDS |
CTTAGGTAAACATTCAAGGG+AGG | 0.664142 | 7.4:-88321282 | MS.gene021729:CDS |
GGTTACCTCCACAAAGTCGA+CGG | 0.667234 | 7.4:-88321594 | MS.gene021729:CDS |
TGAGGAAAATAGCCACCTTG+TGG | 0.671039 | 7.4:+88321512 | None:intergenic |
GCACAACCATCATCACCGAA+TGG | 0.672816 | 7.4:-88321338 | MS.gene021729:CDS |
ACCATGAGAAACGTACCAGT+AGG | 0.705884 | 7.4:-88321878 | MS.gene021729:CDS |
CCTGATGGACAAAAGGCCGG+TGG | 0.706000 | 7.4:+88321434 | None:intergenic |
GGACGAGACAAGTAACACAC+AGG | 0.712817 | 7.4:-88322047 | MS.gene021729:CDS |
GCCTGAAAGAGTCTTCGCGG+AGG | 0.713974 | 7.4:+88321098 | None:intergenic |
CATAGCTTCCCACCACAAGG+TGG | 0.714183 | 7.4:-88321524 | MS.gene021729:CDS |
AGTCTTGCAAGCCAATCCGG+CGG | 0.717524 | 7.4:-88321027 | MS.gene021729:CDS |
AAATGCCAAGGAGTTCCATG+AGG | 0.739950 | 7.4:+88321494 | None:intergenic |
TTCATGAATCCAGAACACAA+CGG | 0.740548 | 7.4:-88322233 | MS.gene021729:intron |
GTGTCCATGCTACTACAACG+AGG | 0.808267 | 7.4:+88321986 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAACTACATAGTATAATT+TGG | + | chr7.4:88321472-88321491 | None:intergenic | 15.0% |
!! | TTTATTTCATATACCAAATA+AGG | + | chr7.4:88321555-88321574 | None:intergenic | 15.0% |
!!! | AATAATTTTTTCACTTTTCA+AGG | - | chr7.4:88321378-88321397 | MS.gene021729:CDS | 15.0% |
!!! | ATATGAGAATTTTGATTTTT+TGG | - | chr7.4:88321177-88321196 | MS.gene021729:CDS | 15.0% |
!!! | TAAGTTTTTGAAGTTATATT+TGG | - | chr7.4:88321489-88321508 | MS.gene021729:CDS | 15.0% |
!!! | TTCTTTTTATGATATTAATG+TGG | - | chr7.4:88322351-88322370 | MS.gene021729:intron | 15.0% |
!! | ATTCTTCCATTTCAAATAAA+GGG | + | chr7.4:88321230-88321249 | None:intergenic | 20.0% |
!! | ATTGAAAGAATTACCTTATT+TGG | - | chr7.4:88321539-88321558 | MS.gene021729:CDS | 20.0% |
!! | CATGAATAAATACTAATCTT+TGG | - | chr7.4:88322396-88322415 | MS.gene021729:intron | 20.0% |
!! | GAAATGGAAGAATATTTAAT+GGG | - | chr7.4:88321237-88321256 | MS.gene021729:CDS | 20.0% |
!! | TATTCTTCCATTTCAAATAA+AGG | + | chr7.4:88321231-88321250 | None:intergenic | 20.0% |
!! | TGAAATGGAAGAATATTTAA+TGG | - | chr7.4:88321236-88321255 | MS.gene021729:CDS | 20.0% |
!! | TTTATTGCGAAAAAAACATT+TGG | + | chr7.4:88322219-88322238 | None:intergenic | 20.0% |
!!! | AAATCATGTTAGTTTATGTT+TGG | + | chr7.4:88321817-88321836 | None:intergenic | 20.0% |
!!! | CTTTTTCTTGTTTGAATTTT+GGG | - | chr7.4:88321849-88321868 | MS.gene021729:CDS | 20.0% |
!!! | TTTGAATTTTGGGTTTTATA+TGG | - | chr7.4:88321859-88321878 | MS.gene021729:CDS | 20.0% |
!! | ATTTTGGATTGTTTTCAATC+TGG | - | chr7.4:88321415-88321434 | MS.gene021729:CDS | 25.0% |
!! | TATTGAAAGGAAAGTGATTT+TGG | - | chr7.4:88321690-88321709 | MS.gene021729:CDS | 25.0% |
!! | TTAGTTTATGTTTGGAATCA+CGG | + | chr7.4:88321809-88321828 | None:intergenic | 25.0% |
!! | TTATGACCCTTTATTTGAAA+TGG | - | chr7.4:88321221-88321240 | MS.gene021729:CDS | 25.0% |
!! | TTTGAAGTTATATTTGGCTT+TGG | - | chr7.4:88321495-88321514 | MS.gene021729:CDS | 25.0% |
!! | TTTTGGATTGTTTTCAATCT+GGG | - | chr7.4:88321416-88321435 | MS.gene021729:CDS | 25.0% |
!!! | AAAATTCATTTGACTTGCTT+TGG | - | chr7.4:88321285-88321304 | MS.gene021729:CDS | 25.0% |
!!! | AAACTGTCGAATTTTAAAAC+TGG | - | chr7.4:88321899-88321918 | MS.gene021729:CDS | 25.0% |
!!! | GCTTTTTCTTGTTTGAATTT+TGG | - | chr7.4:88321848-88321867 | MS.gene021729:CDS | 25.0% |
!!! | GGTGAAGTTTTATTTATTCA+TGG | - | chr7.4:88321516-88321535 | MS.gene021729:CDS | 25.0% |
!!! | TTTAAAATTCGACAGTTTTC+TGG | + | chr7.4:88321897-88321916 | None:intergenic | 25.0% |
AACCTTAGGTAAACATTCAA+GGG | - | chr7.4:88323369-88323388 | MS.gene021729:intron | 30.0% | |
AGAATTAGGAAGCTATTGAA+AGG | - | chr7.4:88321677-88321696 | MS.gene021729:CDS | 30.0% | |
ATTCTATCCTGCAACTTATT+GGG | - | chr7.4:88323255-88323274 | MS.gene021729:intron | 30.0% | |
CACAAACTGATACAAAAACA+AGG | - | chr7.4:88322087-88322106 | MS.gene021729:CDS | 30.0% | |
CCAATTTCAGAAATTCATGT+TGG | - | chr7.4:88321037-88321056 | MS.gene021729:CDS | 30.0% | |
GGATCAATCAAATAAATCGT+CGG | - | chr7.4:88323039-88323058 | MS.gene021729:intron | 30.0% | |
GTGCAAAATTACACAAGAAA+TGG | - | chr7.4:88322956-88322975 | MS.gene021729:intron | 30.0% | |
GTTCAACAAAATCACAATCA+CGG | - | chr7.4:88321758-88321777 | MS.gene021729:CDS | 30.0% | |
TCGAATAAAAAGAACGAAGA+TGG | - | chr7.4:88322455-88322474 | MS.gene021729:intron | 30.0% | |
!! | CCAACATGAATTTCTGAAAT+TGG | + | chr7.4:88321040-88321059 | None:intergenic | 30.0% |
!! | GGAGTTTCAATGTTTGATTT+TGG | - | chr7.4:88321399-88321418 | MS.gene021729:CDS | 30.0% |
!!! | GTTGTTGTTTTTAATCCCAA+GGG | + | chr7.4:88323524-88323543 | None:intergenic | 30.0% |
AAACACCAGACATTAAACCA+AGG | + | chr7.4:88321995-88322014 | None:intergenic | 35.0% | |
AACACCAGACATTAAACCAA+GGG | + | chr7.4:88321994-88322013 | None:intergenic | 35.0% | |
AACATGCTAAAATCAAGCGA+AGG | - | chr7.4:88323397-88323416 | MS.gene021729:intron | 35.0% | |
AACGGTACAATCCTTACATT+TGG | - | chr7.4:88322875-88322894 | MS.gene021729:intron | 35.0% | |
AAGCAGAAAAAAGCTCTTTC+TGG | - | chr7.4:88323494-88323513 | MS.gene021729:intron | 35.0% | |
AATTCCCTTGGTTTAATGTC+TGG | - | chr7.4:88321987-88322006 | MS.gene021729:CDS | 35.0% | |
ACAAGAACATGAGATTGAGA+AGG | - | chr7.4:88321147-88321166 | MS.gene021729:CDS | 35.0% | |
ACCTTGTTGATGCTAGAATT+AGG | - | chr7.4:88321663-88321682 | MS.gene021729:CDS | 35.0% | |
CAACCTTAGGTAAACATTCA+AGG | - | chr7.4:88323368-88323387 | MS.gene021729:intron | 35.0% | |
CAATAAGTTGCAGGATAGAA+TGG | + | chr7.4:88323256-88323275 | None:intergenic | 35.0% | |
CAGTTTGTGTAGAATCTGTT+AGG | + | chr7.4:88322076-88322095 | None:intergenic | 35.0% | |
CATTAGCAGTAGACTCAATA+TGG | + | chr7.4:88322129-88322148 | None:intergenic | 35.0% | |
CATTCTATCCTGCAACTTAT+TGG | - | chr7.4:88323254-88323273 | MS.gene021729:intron | 35.0% | |
CTTGAATGTTTACCTAAGGT+TGG | + | chr7.4:88323370-88323389 | None:intergenic | 35.0% | |
GAGAGTTTGTAGTAGAGTTA+TGG | + | chr7.4:88323348-88323367 | None:intergenic | 35.0% | |
GTTAGGAAACATCGAATGAT+AGG | + | chr7.4:88322059-88322078 | None:intergenic | 35.0% | |
TATCTCAAGAACAAGCTATG+TGG | - | chr7.4:88323101-88323120 | MS.gene021729:intron | 35.0% | |
TCCTAATTCTAGCATCAACA+AGG | + | chr7.4:88321667-88321686 | None:intergenic | 35.0% | |
TCGAATGATAGGATCCAATT+TGG | + | chr7.4:88322048-88322067 | None:intergenic | 35.0% | |
TGAATCACATAAAGGTGAGT+TGG | + | chr7.4:88322903-88322922 | None:intergenic | 35.0% | |
TGTGGTTTCCTAAAACTTTG+AGG | - | chr7.4:88323455-88323474 | MS.gene021729:intron | 35.0% | |
TTAATGTCTGGTGTTTGTGT+CGG | - | chr7.4:88321999-88322018 | MS.gene021729:CDS | 35.0% | |
TTCATGAATCCAGAACACAA+CGG | - | chr7.4:88322421-88322440 | MS.gene021729:intron | 35.0% | |
TTCTATCCTGCAACTTATTG+GGG | - | chr7.4:88323256-88323275 | MS.gene021729:intron | 35.0% | |
TTGTTCTTGAGATACATTGG+TGG | + | chr7.4:88323095-88323114 | None:intergenic | 35.0% | |
! | AGCTTGTTCTTGAGATACAT+TGG | + | chr7.4:88323098-88323117 | None:intergenic | 35.0% |
! | ATTCGACAGTTTTCTGGATT+TGG | + | chr7.4:88321891-88321910 | None:intergenic | 35.0% |
! | ATTCTTCTGTTGATTGTGCA+AGG | + | chr7.4:88322484-88322503 | None:intergenic | 35.0% |
! | CTATTTTGTCCGGTTTTTTG+AGG | + | chr7.4:88322640-88322659 | None:intergenic | 35.0% |
! | TCAGTTTTACTCAATTCCCT+TGG | - | chr7.4:88321975-88321994 | MS.gene021729:CDS | 35.0% |
! | TCATCGATCCTCAAAGTTTT+AGG | + | chr7.4:88323466-88323485 | None:intergenic | 35.0% |
!!! | CGTTGTTGTTTTTAATCCCA+AGG | + | chr7.4:88323525-88323544 | None:intergenic | 35.0% |
AAGCGACACTTCAGAATTCT+CGG | - | chr7.4:88322831-88322850 | MS.gene021729:intron | 40.0% | |
AATGGCATGGAAAATCCTGA+TGG | + | chr7.4:88323238-88323257 | None:intergenic | 40.0% | |
ACTACAAACTCTCCAACCTT+AGG | - | chr7.4:88323355-88323374 | MS.gene021729:intron | 40.0% | |
ACTCTTGTAACTCTCAGTTC+AGG | - | chr7.4:88321633-88321652 | MS.gene021729:CDS | 40.0% | |
CAAGAACAAGCTATGTGGAA+TGG | - | chr7.4:88323106-88323125 | MS.gene021729:intron | 40.0% | |
CGGTGAATTTCACGAAATCA+TGG | + | chr7.4:88321789-88321808 | None:intergenic | 40.0% | |
CTAAAATCAAGCGAAGGAGA+TGG | - | chr7.4:88323403-88323422 | MS.gene021729:intron | 40.0% | |
CTCACCTTTATGTGATTCAG+TGG | - | chr7.4:88322904-88322923 | MS.gene021729:intron | 40.0% | |
CTCATACCAGTGAAGAACAA+GGG | - | chr7.4:88323014-88323033 | MS.gene021729:intron | 40.0% | |
CTCCCTTGAATGTTTACCTA+AGG | + | chr7.4:88323374-88323393 | None:intergenic | 40.0% | |
CTTAGGTAAACATTCAAGGG+AGG | - | chr7.4:88323372-88323391 | MS.gene021729:intron | 40.0% | |
GAACTGAGAGTTACAAGAGT+TGG | + | chr7.4:88321633-88321652 | None:intergenic | 40.0% | |
GATGCCACTGAATCACATAA+AGG | + | chr7.4:88322911-88322930 | None:intergenic | 40.0% | |
GATTGTACCGTTGCATTTCA+AGG | + | chr7.4:88322867-88322886 | None:intergenic | 40.0% | |
GGAATCTGCTCAAAGATGTT+AGG | + | chr7.4:88321925-88321944 | None:intergenic | 40.0% | |
GGATAAGCACCTCAAAAAAC+CGG | - | chr7.4:88322628-88322647 | MS.gene021729:intron | 40.0% | |
GGGGATTAACTCATCCAAAT+TGG | - | chr7.4:88322031-88322050 | MS.gene021729:CDS | 40.0% | |
TAAGCGAAGAAAAGAGCTTG+TGG | - | chr7.4:88323437-88323456 | MS.gene021729:intron | 40.0% | |
TACCGTTGCATTTCAAGGAA+GGG | + | chr7.4:88322862-88322881 | None:intergenic | 40.0% | |
TAGTAAAAGCCACACTTTCG+AGG | - | chr7.4:88321736-88321755 | MS.gene021729:CDS | 40.0% | |
TCATACCAGTGAAGAACAAG+GGG | - | chr7.4:88323015-88323034 | MS.gene021729:intron | 40.0% | |
TCATGAATCCAGAACACAAC+GGG | - | chr7.4:88322422-88322441 | MS.gene021729:intron | 40.0% | |
TGTTACAGTATCCACCGAAA+GGG | - | chr7.4:88322544-88322563 | MS.gene021729:intron | 40.0% | |
TTCAAAGACCGAAGAAGAAC+AGG | - | chr7.4:88322586-88322605 | MS.gene021729:intron | 40.0% | |
TTTGTTGAACCTCGAAAGTG+TGG | + | chr7.4:88321748-88321767 | None:intergenic | 40.0% | |
! | ATTTTCCTCATGGAACTCCT+TGG | - | chr7.4:88323155-88323174 | MS.gene021729:intron | 40.0% |
! | GAGTTATGGTTTGCACCATT+CGG | + | chr7.4:88323334-88323353 | None:intergenic | 40.0% |
! | GGAAAATCCTGATGGACAAA+AGG | + | chr7.4:88323230-88323249 | None:intergenic | 40.0% |
! | GGACAAGGAACTATTTTGTC+CGG | + | chr7.4:88322650-88322669 | None:intergenic | 40.0% |
! | GTGAGTTGGATCCAAATGTA+AGG | + | chr7.4:88322889-88322908 | None:intergenic | 40.0% |
! | TTTTCTCGTCGCACTTTGAA+GGG | + | chr7.4:88323585-88323604 | None:intergenic | 40.0% |
! | TTTTTCTCGTCGCACTTTGA+AGG | + | chr7.4:88323586-88323605 | None:intergenic | 40.0% |
!! | TCAGTTCTAGAAGTTGCATC+TGG | + | chr7.4:88322515-88322534 | None:intergenic | 40.0% |
AAATGCCAAGGAGTTCCATG+AGG | + | chr7.4:88323163-88323182 | None:intergenic | 45.0% | |
AAGTGCAGAGCATATGATGC+AGG | + | chr7.4:88321946-88321965 | None:intergenic | 45.0% | |
AATGCCTGAAAGAGTCTTCG+CGG | + | chr7.4:88323562-88323581 | None:intergenic | 45.0% | |
ACCATGAGAAACGTACCAGT+AGG | - | chr7.4:88322776-88322795 | MS.gene021729:intron | 45.0% | |
ACCTACTGGTACGTTTCTCA+TGG | + | chr7.4:88322780-88322799 | None:intergenic | 45.0% | |
AGTTGCAGGATAGAATGGCA+TGG | + | chr7.4:88323251-88323270 | None:intergenic | 45.0% | |
ATCAGTGAGCTCGTTTGCAT+CGG | + | chr7.4:88323196-88323215 | None:intergenic | 45.0% | |
ATGCTACTACAACGAGGACA+AGG | + | chr7.4:88322665-88322684 | None:intergenic | 45.0% | |
CAAGTGCATGGAACATTCCA+CGG | - | chr7.4:88323290-88323309 | MS.gene021729:intron | 45.0% | |
CAATGTAGCAACCTCCCTTT+CGG | + | chr7.4:88322561-88322580 | None:intergenic | 45.0% | |
CACCCTTCCTTGAAATGCAA+CGG | - | chr7.4:88322857-88322876 | MS.gene021729:intron | 45.0% | |
CAGTTCTTGCAGAAATGACG+GGG | + | chr7.4:88322731-88322750 | None:intergenic | 45.0% | |
CCTCATACCAGTGAAGAACA+AGG | - | chr7.4:88323013-88323032 | MS.gene021729:intron | 45.0% | |
CCTTGTTCTTCACTGGTATG+AGG | + | chr7.4:88323016-88323035 | None:intergenic | 45.0% | |
CTGTTACAGTATCCACCGAA+AGG | - | chr7.4:88322543-88322562 | MS.gene021729:intron | 45.0% | |
GAAAATAGCCACCTTGTGGT+GGG | + | chr7.4:88323141-88323160 | None:intergenic | 45.0% | |
GAACTCCTTGGCATTTACCA+TGG | - | chr7.4:88323167-88323186 | MS.gene021729:intron | 45.0% | |
GACTCTGCGATCAAACTGTT+TGG | - | chr7.4:88321004-88321023 | MS.gene021729:CDS | 45.0% | |
GCAAGAACTGCCAGAGATAT+TGG | - | chr7.4:88322741-88322760 | MS.gene021729:intron | 45.0% | |
GCAGTTCTTGCAGAAATGAC+GGG | + | chr7.4:88322732-88322751 | None:intergenic | 45.0% | |
GGATTCCATGGTAAATGCCA+AGG | + | chr7.4:88323175-88323194 | None:intergenic | 45.0% | |
GGCAGTTCTTGCAGAAATGA+CGG | + | chr7.4:88322733-88322752 | None:intergenic | 45.0% | |
GTACAACCCCAATAAGTTGC+AGG | + | chr7.4:88323265-88323284 | None:intergenic | 45.0% | |
GTACCGTTGCATTTCAAGGA+AGG | + | chr7.4:88322863-88322882 | None:intergenic | 45.0% | |
GTCTACTGCTAATGCTCTCA+TGG | - | chr7.4:88322135-88322154 | MS.gene021729:CDS | 45.0% | |
GTGCGACGAGAAAAATCACT+CGG | - | chr7.4:88323591-88323610 | MS.gene021729:CDS | 45.0% | |
GTTGTACTATGCCAAGTGCA+TGG | - | chr7.4:88323278-88323297 | MS.gene021729:intron | 45.0% | |
TACGTTTCTCATGGTTCCAC+CGG | + | chr7.4:88322771-88322790 | None:intergenic | 45.0% | |
TGAGGAAAATAGCCACCTTG+TGG | + | chr7.4:88323145-88323164 | None:intergenic | 45.0% | |
TGTCTCGTCCTGTTCTTCTT+CGG | + | chr7.4:88322597-88322616 | None:intergenic | 45.0% | |
TTCAGTCTTGCAAGCCAATC+CGG | - | chr7.4:88323624-88323643 | MS.gene021729:CDS | 45.0% | |
TTGTCCTCGTTGTAGTAGCA+TGG | - | chr7.4:88322664-88322683 | MS.gene021729:intron | 45.0% | |
TTTGAGGATCGATGACTCAG+AGG | - | chr7.4:88323471-88323490 | MS.gene021729:intron | 45.0% | |
! | AATCCTGATGGACAAAAGGC+CGG | + | chr7.4:88323226-88323245 | None:intergenic | 45.0% |
! | GTTTGTGTCGGTGCTTCATA+GGG | - | chr7.4:88322011-88322030 | MS.gene021729:CDS | 45.0% |
! | GTTTTTCTCCCGTTGTGTTC+TGG | + | chr7.4:88322433-88322452 | None:intergenic | 45.0% |
! | TGTTTGTGTCGGTGCTTCAT+AGG | - | chr7.4:88322010-88322029 | MS.gene021729:CDS | 45.0% |
! | TTTGCACCATTCGGTGATGA+TGG | + | chr7.4:88323325-88323344 | None:intergenic | 45.0% |
! | TTTGTGTCGGTGCTTCATAG+GGG | - | chr7.4:88322012-88322031 | MS.gene021729:CDS | 45.0% |
!! | CAAGGTGGCTATTTTCCTCA+TGG | - | chr7.4:88323145-88323164 | MS.gene021729:intron | 45.0% |
!!! | GCTCTTGTTTTTTCTGCGAC+CGG | + | chr7.4:88322804-88322823 | None:intergenic | 45.0% |
AGAAACGTACCAGTAGGTGC+CGG | - | chr7.4:88322782-88322801 | MS.gene021729:intron | 50.0% | |
AGCTCTTTCTGGACAACCCT+TGG | - | chr7.4:88323505-88323524 | MS.gene021729:intron | 50.0% | |
ATCCTCCCCTTGTTCTTCAC+TGG | + | chr7.4:88323023-88323042 | None:intergenic | 50.0% | |
CGTGGAATGTTCCATGCACT+TGG | + | chr7.4:88323292-88323311 | None:intergenic | 50.0% | |
CTCGTTTGCATCGGATTCCA+TGG | + | chr7.4:88323187-88323206 | None:intergenic | 50.0% | |
GCACAACCATCATCACCGAA+TGG | - | chr7.4:88323316-88323335 | MS.gene021729:intron | 50.0% | |
GCTCTTTCTGGACAACCCTT+GGG | - | chr7.4:88323506-88323525 | MS.gene021729:intron | 50.0% | |
GGAAAATAGCCACCTTGTGG+TGG | + | chr7.4:88323142-88323161 | None:intergenic | 50.0% | |
GGACGAGACAAGTAACACAC+AGG | - | chr7.4:88322607-88322626 | MS.gene021729:intron | 50.0% | |
GGTTACCTCCACAAAGTCGA+CGG | - | chr7.4:88323060-88323079 | MS.gene021729:intron | 50.0% | |
GTGTCCATGCTACTACAACG+AGG | + | chr7.4:88322671-88322690 | None:intergenic | 50.0% | |
TACAGTATCCACCGAAAGGG+AGG | - | chr7.4:88322547-88322566 | MS.gene021729:intron | 50.0% | |
TACCAGTGAAGAACAAGGGG+AGG | - | chr7.4:88323018-88323037 | MS.gene021729:intron | 50.0% | |
TGCCAGAGATATTGGACTGC+CGG | - | chr7.4:88322749-88322768 | MS.gene021729:intron | 50.0% | |
! | TCTTGCAGAAATGACGGGGT+TGG | + | chr7.4:88322727-88322746 | None:intergenic | 50.0% |
ACCTCCACAAAGTCGACGGA+AGG | - | chr7.4:88323064-88323083 | MS.gene021729:intron | 55.0% | |
AGTCTTGCAAGCCAATCCGG+CGG | - | chr7.4:88323627-88323646 | MS.gene021729:CDS | 55.0% | |
CACCGGCAGTCCAATATCTC+TGG | + | chr7.4:88322754-88322773 | None:intergenic | 55.0% | |
CAGAGATATTGGACTGCCGG+TGG | - | chr7.4:88322752-88322771 | MS.gene021729:intron | 55.0% | |
CATAGCTTCCCACCACAAGG+TGG | - | chr7.4:88323130-88323149 | MS.gene021729:intron | 55.0% | |
TCCTCCGCGAAGACTCTTTC+AGG | - | chr7.4:88323555-88323574 | MS.gene021729:CDS | 55.0% | |
TGTAGCAACCTCCCTTTCGG+TGG | + | chr7.4:88322558-88322577 | None:intergenic | 55.0% | |
! | CACCTTGTGGTGGGAAGCTA+TGG | + | chr7.4:88323132-88323151 | None:intergenic | 55.0% |
! | GATGATGGTTGTGCTTGCCG+TGG | + | chr7.4:88323310-88323329 | None:intergenic | 55.0% |
!! | ACCTTCCGTCGACTTTGTGG+AGG | + | chr7.4:88323068-88323087 | None:intergenic | 55.0% |
!! | GAGCTCACTGATTCCACCAC+CGG | - | chr7.4:88323204-88323223 | MS.gene021729:intron | 55.0% |
!! | TGCACCTTCCGTCGACTTTG+TGG | + | chr7.4:88323071-88323090 | None:intergenic | 55.0% |
AGCGACCTAGACAATGCCGC+CGG | + | chr7.4:88323646-88323665 | None:intergenic | 60.0% | |
CCAATCCGGCGGCATTGTCT+AGG | - | chr7.4:88323638-88323657 | MS.gene021729:CDS | 60.0% | |
CCTAGACAATGCCGCCGGAT+TGG | + | chr7.4:88323641-88323660 | None:intergenic | 60.0% | |
GATGGACAAAAGGCCGGTGG+TGG | + | chr7.4:88323220-88323239 | None:intergenic | 60.0% | |
GCCTGAAAGAGTCTTCGCGG+AGG | + | chr7.4:88323559-88323578 | None:intergenic | 60.0% | |
GGCCATAGCTTCCCACCACA+AGG | - | chr7.4:88323127-88323146 | MS.gene021729:intron | 60.0% | |
TTTCTGCGACCGGCACCTAC+TGG | + | chr7.4:88322794-88322813 | None:intergenic | 60.0% | |
! | CCACCGGCCTTTTGTCCATC+AGG | - | chr7.4:88323220-88323239 | MS.gene021729:intron | 60.0% |
! | CCTGATGGACAAAAGGCCGG+TGG | + | chr7.4:88323223-88323242 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 88320989 | 88323687 | 88320989 | ID=MS.gene021729 |
chr7.4 | mRNA | 88320989 | 88323687 | 88320989 | ID=MS.gene021729.t1;Parent=MS.gene021729 |
chr7.4 | exon | 88323508 | 88323687 | 88323508 | ID=MS.gene021729.t1.exon1;Parent=MS.gene021729.t1 |
chr7.4 | CDS | 88323508 | 88323687 | 88323508 | ID=cds.MS.gene021729.t1;Parent=MS.gene021729.t1 |
chr7.4 | exon | 88320989 | 88322242 | 88320989 | ID=MS.gene021729.t1.exon2;Parent=MS.gene021729.t1 |
chr7.4 | CDS | 88320989 | 88322242 | 88320989 | ID=cds.MS.gene021729.t1;Parent=MS.gene021729.t1 |
Gene Sequence |
Protein sequence |