AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021745

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021745.t1 MTR_7g011130 65.714 350 50 5 1 281 1 349 6.03e-147 416
MS.gene021745.t1 MTR_7g011120 61.446 332 41 9 12 281 1 307 4.30e-123 354
MS.gene021745.t1 MTR_3g070040 55.874 349 58 7 12 281 1 332 4.30e-115 334
MS.gene021745.t1 MTR_3g070030 53.186 361 77 6 1 281 1 349 1.36e-109 321
MS.gene021745.t1 MTR_2g064730 85.526 76 10 1 159 233 6 81 8.52e-38 129
MS.gene021745.t1 MTR_6g012670 34.899 298 126 11 15 260 16 297 2.51e-32 121
MS.gene021745.t1 MTR_4g108760 32.061 262 112 9 5 210 2 253 3.22e-21 92.0
MS.gene021745.t1 MTR_3g435150 56.522 69 30 0 5 73 2 70 7.18e-17 79.3
MS.gene021745.t1 MTR_3g435150 45.455 110 45 4 66 175 124 218 1.70e-15 75.5
MS.gene021745.t1 MTR_2g078700 56.250 64 27 1 19 82 23 85 3.42e-16 78.2
MS.gene021745.t1 MTR_2g078700 40.741 108 40 2 66 156 133 233 3.43e-15 75.1
MS.gene021745.t1 MTR_7g085260 50.725 69 34 0 5 73 3 71 7.21e-16 77.0
MS.gene021745.t1 MTR_7g085260 43.089 123 48 6 66 186 129 231 3.69e-13 69.3
MS.gene021745.t1 MTR_6g032770 55.932 59 26 0 15 73 14 72 1.35e-15 76.3
MS.gene021745.t1 MTR_6g084430 51.562 64 30 1 19 82 5 67 8.71e-15 73.6
MS.gene021745.t1 MTR_3g109340 56.364 55 24 0 19 73 22 76 9.59e-15 73.9
MS.gene021745.t1 MTR_3g109340 56.364 55 24 0 19 73 22 76 9.64e-15 73.9
MS.gene021745.t1 MTR_1g008740 50.769 65 30 2 19 82 13 76 2.23e-14 72.8
MS.gene021745.t1 MTR_1g008740 50.769 65 30 2 19 82 27 90 2.45e-14 72.8
MS.gene021745.t1 MTR_8g059170 50.000 60 30 0 14 73 9 68 1.53e-12 67.0
MS.gene021745.t1 MTR_7g005280 29.518 166 46 4 16 121 12 166 2.71e-12 65.9
MS.gene021745.t1 MTR_2g064470 45.833 72 34 3 12 82 4 71 4.82e-12 65.5
MS.gene021745.t1 MTR_3g116070 47.692 65 32 2 19 82 23 86 5.68e-12 65.5
MS.gene021745.t1 MTR_2g079990 46.667 60 32 0 14 73 11 70 1.33e-11 64.7
MS.gene021745.t1 MTR_2g079990 46.667 60 32 0 14 73 11 70 1.54e-11 64.3
MS.gene021745.t1 MTR_3g064580 50.000 52 26 0 17 68 4 55 2.54e-11 64.3
MS.gene021745.t1 MTR_5g076850 50.000 52 26 0 17 68 4 55 4.72e-11 63.5
MS.gene021745.t1 MTR_3g088110 46.552 58 31 0 16 73 4 61 5.93e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021745.t1 AT5G07680 33.040 227 80 7 15 176 13 232 6.57e-21 90.9
MS.gene021745.t1 AT5G07680 33.184 223 77 7 19 176 3 218 2.99e-20 89.0
MS.gene021745.t1 AT5G61430 28.363 342 152 11 5 262 2 334 5.61e-20 88.6
MS.gene021745.t1 AT5G61430 41.322 121 50 3 66 175 61 171 8.16e-18 81.6
MS.gene021745.t1 AT5G53950 56.250 64 27 1 19 82 17 79 3.29e-17 81.3
MS.gene021745.t1 AT5G18270 59.322 59 24 0 15 73 17 75 8.52e-17 79.3
MS.gene021745.t1 AT3G29035 53.521 71 33 0 3 73 8 78 1.85e-16 78.6
MS.gene021745.t1 AT5G18270 57.627 59 25 0 15 73 17 75 2.06e-16 78.6
MS.gene021745.t1 AT3G18400 56.364 55 24 0 19 73 5 59 1.02e-15 76.3
MS.gene021745.t1 AT5G39610 51.429 70 30 1 8 73 5 74 4.94e-14 71.2
MS.gene021745.t1 AT5G39610 42.857 91 39 3 66 156 128 205 5.91e-11 62.0
MS.gene021745.t1 AT3G15170 52.381 63 29 1 20 82 21 82 5.25e-14 71.2
MS.gene021745.t1 AT1G76420 46.875 64 33 1 19 82 22 84 2.03e-13 69.7
MS.gene021745.t1 AT3G04060 55.932 59 26 0 15 73 16 74 3.19e-13 69.3
MS.gene021745.t1 AT3G04060 44.186 86 40 2 66 150 129 207 3.12e-11 63.5
MS.gene021745.t1 AT2G24430 50.847 59 29 0 15 73 12 70 5.01e-13 68.6
MS.gene021745.t1 AT2G24430 50.847 59 29 0 15 73 12 70 5.01e-13 68.6
MS.gene021745.t1 AT4G27410 46.667 60 32 0 14 73 9 68 5.26e-12 65.5
MS.gene021745.t1 AT5G17260 51.923 52 25 0 17 68 4 55 1.63e-11 64.7
MS.gene021745.t1 AT3G04070 52.727 55 26 0 19 73 10 64 2.28e-11 63.9
MS.gene021745.t1 AT3G04070 52.727 55 26 0 19 73 10 64 2.56e-11 63.9
MS.gene021745.t1 AT1G65910 50.000 52 26 0 17 68 4 55 4.73e-11 63.5
MS.gene021745.t1 AT3G03200 51.923 52 25 0 17 68 4 55 4.75e-11 63.2

Find 52 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATTGTTGCTTCAGTTAA+AGG 0.182371 7.4:+88178907 None:intergenic
ATCTCTATTGCCTCCATTGT+TGG 0.290405 7.4:-88179109 MS.gene021745:CDS
GATATCTCATCTGTGGTATA+TGG 0.312060 7.4:-88178793 MS.gene021745:CDS
TTTGGTTTCTCTGTTTGATT+TGG 0.323737 7.4:+88179012 None:intergenic
ATTTGATGGTCCTTCTTTAG+AGG 0.329672 7.4:+88179140 None:intergenic
TTCATCCTCTTCAAAACAAA+TGG 0.371961 7.4:-88178938 MS.gene021745:CDS
CTCTCCCAAAAGAAAACTCT+TGG 0.386693 7.4:+88178833 None:intergenic
CAATTGTTGCTTCAGTTAAA+GGG 0.406411 7.4:+88178908 None:intergenic
ATAGGTTGTGCTCAGGAAAA+AGG 0.408448 7.4:+88179793 None:intergenic
AGAGATGCAATAGTATTTGA+TGG 0.410698 7.4:+88179126 None:intergenic
GACATGCTTCAAAGGTGGTC+GGG 0.419512 7.4:-88178766 MS.gene021745:CDS
TTTATAAGCTCTTCATCAGT+TGG 0.426096 7.4:+88181004 None:intergenic
AAAATGAATGGTTCAAAACT+TGG 0.427761 7.4:-88179174 MS.gene021745:CDS
AATTCCTGACCATTGAGGTT+TGG 0.444618 7.4:+88178875 None:intergenic
AAATCAATACCTTGTCAAGA+AGG 0.466786 7.4:-88180984 MS.gene021745:CDS
GAAATCTCAGAAGCTATCAT+TGG 0.467463 7.4:+88178705 None:intergenic
CCTGACCATTGAGGTTTGGT+TGG 0.476475 7.4:+88178879 None:intergenic
GTCTTTGAGAAGCGTAATCA+TGG 0.493003 7.4:-88179201 MS.gene021745:CDS
CCAACCAAACCTCAATGGTC+AGG 0.513919 7.4:-88178879 MS.gene021745:CDS
AATCATGGAAAGAAAATGAA+TGG 0.519050 7.4:-88179186 MS.gene021745:CDS
TCTCCCAAAAGAAAACTCTT+GGG 0.526665 7.4:+88178834 None:intergenic
TTACCATTCCATGTGTGGAT+AGG 0.526862 7.4:+88179775 None:intergenic
ATGGAAATGACATGCTTCAA+AGG 0.541226 7.4:-88178774 MS.gene021745:CDS
AGGTCTAACTCCTCTAAAGA+AGG 0.542820 7.4:-88179150 MS.gene021745:CDS
TGATGAATTCCTGACCATTG+AGG 0.543983 7.4:+88178870 None:intergenic
CAACCTATCCACACATGGAA+TGG 0.547037 7.4:-88179778 MS.gene021745:intron
ACATGCTTCAAAGGTGGTCG+GGG 0.553685 7.4:-88178765 MS.gene021745:CDS
TGATTCCAACCAAACCTCAA+TGG 0.559757 7.4:-88178884 MS.gene021745:CDS
TGACATGCTTCAAAGGTGGT+CGG 0.565490 7.4:-88178767 MS.gene021745:CDS
GTATTCATGCATGACCCAGT+TGG 0.566311 7.4:+88179848 None:intergenic
CAATATTACCATTCCATGTG+TGG 0.569497 7.4:+88179770 None:intergenic
AATTCACCTGGCAAATCCCA+TGG 0.572720 7.4:+88180902 None:intergenic
GAAAAGGTCAAATTTCCCGC+TGG 0.582719 7.4:-88181040 MS.gene021745:CDS
AGAGTGAGTTACCCTCCAAT+CGG 0.585613 7.4:+88179826 None:intergenic
GGTCATGCATGAATACCGAT+TGG 0.588791 7.4:-88179841 MS.gene021745:CDS
GCTGCAAGTCGAGTAGAAGC+TGG 0.589005 7.4:+88178727 None:intergenic
CATGCATGAATACCGATTGG+AGG 0.592763 7.4:-88179838 MS.gene021745:CDS
TGGAAAGAATCGATAACCAG+CGG 0.593934 7.4:+88181024 None:intergenic
TGAATGGTTCAAAACTTGGA+AGG 0.595179 7.4:-88179170 MS.gene021745:CDS
GGAAAGAATCGATAACCAGC+GGG 0.598033 7.4:+88181025 None:intergenic
TGTGAACCATGGGATTTGCC+AGG 0.615720 7.4:-88180908 MS.gene021745:intron
ATGCATGAATACCGATTGGA+GGG 0.621001 7.4:-88179837 MS.gene021745:CDS
TATGGAGAATAATCCAACAA+TGG 0.629197 7.4:+88179096 None:intergenic
TGTGTGGATAGGTTGTGCTC+AGG 0.631192 7.4:+88179786 None:intergenic
TGTCATCAACCTTCTTGACA+AGG 0.634308 7.4:+88180975 None:intergenic
TATGAATAAGTGTGAACCAT+GGG 0.641317 7.4:-88180918 MS.gene021745:CDS
GGAGAATAATCCAACAATGG+AGG 0.643665 7.4:+88179099 None:intergenic
TGATGCTGATATCTCATCTG+TGG 0.664657 7.4:-88178800 MS.gene021745:CDS
GAAATGACATGCTTCAAAGG+TGG 0.674513 7.4:-88178771 MS.gene021745:CDS
GAGCACAACCTATCCACACA+TGG 0.677713 7.4:-88179783 MS.gene021745:CDS
ATATGAATAAGTGTGAACCA+TGG 0.681966 7.4:-88180919 MS.gene021745:CDS
TACATAGGAAGAGCTCCGAG+CGG 0.756904 7.4:-88179879 MS.gene021745:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATAAAATATAAATTTT+AGG - chr7.4:88180401-88180420 MS.gene021745:intron 0.0%
!!! ATTATAAAATATAAATTTTA+GGG - chr7.4:88180402-88180421 MS.gene021745:intron 0.0%
!! AAAATGAAATAAAAACAATT+TGG - chr7.4:88179340-88179359 MS.gene021745:intron 10.0%
!!! ACTTATTTTATTTTTTAAAG+TGG - chr7.4:88179615-88179634 MS.gene021745:intron 10.0%
!!! TAAAAAAGTTACTTTTATTA+TGG + chr7.4:88180371-88180390 None:intergenic 10.0%
!! TAAATATTATATTAGTAGTC+TGG - chr7.4:88178949-88178968 MS.gene021745:CDS 15.0%
!!! AGTTTACTTTATTTAGAAAA+AGG + chr7.4:88180332-88180351 None:intergenic 15.0%
!!! GTGAATTTAATGTTTTTTAT+AGG - chr7.4:88178907-88178926 MS.gene021745:CDS 15.0%
!!! TTATGCTTTCTTATTTTTTT+TGG - chr7.4:88179704-88179723 MS.gene021745:intron 15.0%
!! AAAAGAAGACTTAAATTATG+TGG - chr7.4:88179299-88179318 MS.gene021745:intron 20.0%
!! TAAAAAACATTAAATTCACC+TGG + chr7.4:88178906-88178925 None:intergenic 20.0%
!!! ATTTGATTTTCACTATTGTA+TGG + chr7.4:88180718-88180737 None:intergenic 20.0%
!!! TTTAAAGTTGCTAAAAAAAG+AGG - chr7.4:88179046-88179065 MS.gene021745:CDS 20.0%
! AAAATGAATGGTTCAAAACT+TGG - chr7.4:88180619-88180638 MS.gene021745:intron 25.0%
! AAACACTATACAATGACATT+AGG - chr7.4:88179253-88179272 MS.gene021745:intron 25.0%
! AAAGACAAAGAGATTTACAA+GGG - chr7.4:88179854-88179873 MS.gene021745:CDS 25.0%
! AAGAAAAAGAAGAAGAAAAG+TGG - chr7.4:88179418-88179437 MS.gene021745:intron 25.0%
! AATCATGGAAAGAAAATGAA+TGG - chr7.4:88180607-88180626 MS.gene021745:intron 25.0%
! ACAAGGGAAATTCATTAATT+GGG - chr7.4:88179870-88179889 MS.gene021745:CDS 25.0%
! ACAGATCTTTAGTAAATGTT+TGG + chr7.4:88180238-88180257 None:intergenic 25.0%
! AGATAACGACAATATATCTA+AGG + chr7.4:88179490-88179509 None:intergenic 25.0%
! TACAAGGGAAATTCATTAAT+TGG - chr7.4:88179869-88179888 MS.gene021745:CDS 25.0%
! TCGAAAAATGGAAATTGAAA+AGG - chr7.4:88178737-88178756 MS.gene021745:CDS 25.0%
!!! ATAAATTTTAGGGAAACTAC+TGG - chr7.4:88180412-88180431 MS.gene021745:intron 25.0%
!!! CTTCATTTTTCATCTTAATG+TGG + chr7.4:88179232-88179251 None:intergenic 25.0%
!!! GGTATTTTTTTTTTGTGTGA+GGG - chr7.4:88179763-88179782 MS.gene021745:intron 25.0%
!!! TGGTATTTTTTTTTTGTGTG+AGG - chr7.4:88179762-88179781 MS.gene021745:intron 25.0%
!!! TTTTTTGGTTTATTCAGAGA+TGG - chr7.4:88179719-88179738 MS.gene021745:intron 25.0%
AAATCAATACCTTGTCAAGA+AGG - chr7.4:88178809-88178828 MS.gene021745:CDS 30.0%
AATTGGGATGAAAAAAACAC+TGG - chr7.4:88179886-88179905 MS.gene021745:intron 30.0%
ACGTAATTCTATCAAACACA+TGG + chr7.4:88180131-88180150 None:intergenic 30.0%
AGAGATGCAATAGTATTTGA+TGG + chr7.4:88180670-88180689 None:intergenic 30.0%
ATATGAATAAGTGTGAACCA+TGG - chr7.4:88178874-88178893 MS.gene021745:CDS 30.0%
ATGATTTATACTCTGTCTAC+TGG - chr7.4:88180075-88180094 MS.gene021745:intron 30.0%
ATGTGGTGTATATTTGATTC+AGG + chr7.4:88179215-88179234 None:intergenic 30.0%
CAAAGACAAAGAGATTTACA+AGG - chr7.4:88179853-88179872 MS.gene021745:CDS 30.0%
TATGAATAAGTGTGAACCAT+GGG - chr7.4:88178875-88178894 MS.gene021745:CDS 30.0%
TATGGAGAATAATCCAACAA+TGG + chr7.4:88180700-88180719 None:intergenic 30.0%
TATTCAGAGATGGCTAAAAT+GGG - chr7.4:88179729-88179748 MS.gene021745:intron 30.0%
TTATTCAGAGATGGCTAAAA+TGG - chr7.4:88179728-88179747 MS.gene021745:intron 30.0%
TTCATCCTCTTCAAAACAAA+TGG - chr7.4:88180855-88180874 MS.gene021745:intron 30.0%
TTGTCGTTATCTTACTTTGA+TGG - chr7.4:88179498-88179517 MS.gene021745:intron 30.0%
TTTATAAGCTCTTCATCAGT+TGG + chr7.4:88178792-88178811 None:intergenic 30.0%
! ATGTTGTCTTCTTGTGTTTT+TGG + chr7.4:88180802-88180821 None:intergenic 30.0%
! CAATTGTTGCTTCAGTTAAA+GGG + chr7.4:88180888-88180907 None:intergenic 30.0%
! TTTGGTTTCTCTGTTTGATT+TGG + chr7.4:88180784-88180803 None:intergenic 30.0%
!! ACAATTTGGACTAGTGATTT+CGG - chr7.4:88179354-88179373 MS.gene021745:intron 30.0%
!! TTCAATTTCCATTTTTCGAC+TGG + chr7.4:88178736-88178755 None:intergenic 30.0%
!!! AAAACACTGGTTTTCTACAT+AGG - chr7.4:88179899-88179918 MS.gene021745:intron 30.0%
!!! AACATCCATTTGTTTTGAAG+AGG + chr7.4:88180863-88180882 None:intergenic 30.0%
!!! AACCTTTTTTGTAGAGTGAA+TGG - chr7.4:88180557-88180576 MS.gene021745:intron 30.0%
!!! ACCTTTTTTGTAGAGTGAAT+GGG - chr7.4:88180558-88180577 MS.gene021745:intron 30.0%
!!! ACTACGTGTTGGATTTTTTT+TGG - chr7.4:88178981-88179000 MS.gene021745:CDS 30.0%
AAAAATACCCAACTGGTCAA+AGG - chr7.4:88179789-88179808 MS.gene021745:CDS 35.0%
ACCCATTCACTCTACAAAAA+AGG + chr7.4:88180562-88180581 None:intergenic 35.0%
ATGGAAATGACATGCTTCAA+AGG - chr7.4:88181019-88181038 MS.gene021745:CDS 35.0%
CAATATTACCATTCCATGTG+TGG + chr7.4:88180026-88180045 None:intergenic 35.0%
CTAAAATGGGAGAAACAGAA+TGG - chr7.4:88179742-88179761 MS.gene021745:intron 35.0%
CTTCTAGATCTACCAATGAA+GGG + chr7.4:88179401-88179420 None:intergenic 35.0%
GAATGTTTCCAGTCGAAAAA+TGG - chr7.4:88178725-88178744 MS.gene021745:CDS 35.0%
GATATCTCATCTGTGGTATA+TGG - chr7.4:88181000-88181019 MS.gene021745:CDS 35.0%
GGATTTGAAAAACTACGTGT+TGG - chr7.4:88178970-88178989 MS.gene021745:CDS 35.0%
GTAAATTTAACCACGTCTAG+TGG + chr7.4:88179597-88179616 None:intergenic 35.0%
TCTCCCAAAAGAAAACTCTT+GGG + chr7.4:88180962-88180981 None:intergenic 35.0%
TCTTCTAGATCTACCAATGA+AGG + chr7.4:88179402-88179421 None:intergenic 35.0%
TGAATGGTTCAAAACTTGGA+AGG - chr7.4:88180623-88180642 MS.gene021745:intron 35.0%
! ATTTGATGGTCCTTCTTTAG+AGG + chr7.4:88180656-88180675 None:intergenic 35.0%
! GCAATTGTTGCTTCAGTTAA+AGG + chr7.4:88180889-88180908 None:intergenic 35.0%
! TCTCCCAAGAGTTTTCTTTT+GGG - chr7.4:88180956-88180975 MS.gene021745:CDS 35.0%
! TTCTCCCAAGAGTTTTCTTT+TGG - chr7.4:88180955-88180974 MS.gene021745:CDS 35.0%
!! CAATTTGGACTAGTGATTTC+GGG - chr7.4:88179355-88179374 MS.gene021745:intron 35.0%
AAACCTAAACCACCCTTCAT+TGG - chr7.4:88179386-88179405 MS.gene021745:intron 40.0%
AATTCCTGACCATTGAGGTT+TGG + chr7.4:88180921-88180940 None:intergenic 40.0%
AGGGACAAAAAATACCCAAC+TGG - chr7.4:88179782-88179801 MS.gene021745:CDS 40.0%
ATAGGTTGTGCTCAGGAAAA+AGG + chr7.4:88180003-88180022 None:intergenic 40.0%
ATCTCTATTGCCTCCATTGT+TGG - chr7.4:88180684-88180703 MS.gene021745:intron 40.0%
CCAGATCTAATCAATGACCT+TGG + chr7.4:88179168-88179187 None:intergenic 40.0%
CTCTCCCAAAAGAAAACTCT+TGG + chr7.4:88180963-88180982 None:intergenic 40.0%
CTGACACATCATAATGTGTC+AGG - chr7.4:88179552-88179571 MS.gene021745:intron 40.0%
GAAATGACATGCTTCAAAGG+TGG - chr7.4:88181022-88181041 MS.gene021745:CDS 40.0%
GACACATTATGATGTGTCAG+TGG + chr7.4:88179552-88179571 None:intergenic 40.0%
GGAGAATAATCCAACAATGG+AGG + chr7.4:88180697-88180716 None:intergenic 40.0%
TGATGAATTCCTGACCATTG+AGG + chr7.4:88180926-88180945 None:intergenic 40.0%
TGATGCTGATATCTCATCTG+TGG - chr7.4:88180993-88181012 MS.gene021745:CDS 40.0%
TGATTCCAACCAAACCTCAA+TGG - chr7.4:88180909-88180928 MS.gene021745:CDS 40.0%
TGGAAAGAATCGATAACCAG+CGG + chr7.4:88178772-88178791 None:intergenic 40.0%
TGTCATCAACCTTCTTGACA+AGG + chr7.4:88178821-88178840 None:intergenic 40.0%
TTACCATTCCATGTGTGGAT+AGG + chr7.4:88180021-88180040 None:intergenic 40.0%
! AAGAAAAGTGGTGACGAGTA+GGG - chr7.4:88179430-88179449 MS.gene021745:intron 40.0%
! AGGTCTAACTCCTCTAAAGA+AGG - chr7.4:88180643-88180662 MS.gene021745:intron 40.0%
! ATGCATGAATACCGATTGGA+GGG - chr7.4:88179956-88179975 MS.gene021745:intron 40.0%
! CCAAGGTCATTGATTAGATC+TGG - chr7.4:88179165-88179184 MS.gene021745:CDS 40.0%
! GTCTTTGAGAAGCGTAATCA+TGG - chr7.4:88180592-88180611 MS.gene021745:intron 40.0%
!! CTATATCATTGATGACGCCA+AGG - chr7.4:88179148-88179167 MS.gene021745:CDS 40.0%
AATTCACCTGGCAAATCCCA+TGG + chr7.4:88178894-88178913 None:intergenic 45.0%
ACCAACAGAGCTACTAATGC+TGG - chr7.4:88179812-88179831 MS.gene021745:CDS 45.0%
AGAGTGAGTTACCCTCCAAT+CGG + chr7.4:88179970-88179989 None:intergenic 45.0%
CAACCTATCCACACATGGAA+TGG - chr7.4:88180015-88180034 MS.gene021745:intron 45.0%
CTACCAATGAAGGGTGGTTT+AGG + chr7.4:88179392-88179411 None:intergenic 45.0%
CTAGATCTACCAATGAAGGG+TGG + chr7.4:88179398-88179417 None:intergenic 45.0%
GAAAAGGTCAAATTTCCCGC+TGG - chr7.4:88178753-88178772 MS.gene021745:CDS 45.0%
GAGCGGTGAAAAATCCAACT+GGG - chr7.4:88179931-88179950 MS.gene021745:intron 45.0%
GGAAAGAATCGATAACCAGC+GGG + chr7.4:88178771-88178790 None:intergenic 45.0%
GGTCATGCATGAATACCGAT+TGG - chr7.4:88179952-88179971 MS.gene021745:intron 45.0%
GTATTCATGCATGACCCAGT+TGG + chr7.4:88179948-88179967 None:intergenic 45.0%
TGACATGCTTCAAAGGTGGT+CGG - chr7.4:88181026-88181045 MS.gene021745:CDS 45.0%
TGTTGGTCCTTTGACCAGTT+GGG + chr7.4:88179799-88179818 None:intergenic 45.0%
! CAGTTGGATTTTTCACCGCT+CGG + chr7.4:88179932-88179951 None:intergenic 45.0%
! CATGCATGAATACCGATTGG+AGG - chr7.4:88179955-88179974 MS.gene021745:intron 45.0%
! GAAGAAAAGTGGTGACGAGT+AGG - chr7.4:88179429-88179448 MS.gene021745:intron 45.0%
! GAGCTACTAATGCTGGCTAT+TGG - chr7.4:88179819-88179838 MS.gene021745:CDS 45.0%
ACATGCTTCAAAGGTGGTCG+GGG - chr7.4:88181028-88181047 MS.gene021745:CDS 50.0%
CAACATGACACCACTAGACG+TGG - chr7.4:88179584-88179603 MS.gene021745:intron 50.0%
CCAACCAAACCTCAATGGTC+AGG - chr7.4:88180914-88180933 MS.gene021745:CDS 50.0%
CGAGCGGTGAAAAATCCAAC+TGG - chr7.4:88179930-88179949 MS.gene021745:intron 50.0%
CTGTTGGTCCTTTGACCAGT+TGG + chr7.4:88179800-88179819 None:intergenic 50.0%
GACATGCTTCAAAGGTGGTC+GGG - chr7.4:88181027-88181046 MS.gene021745:CDS 50.0%
GAGCACAACCTATCCACACA+TGG - chr7.4:88180010-88180029 MS.gene021745:intron 50.0%
GCTGGCTATTGGAAAGCAAC+AGG - chr7.4:88179830-88179849 MS.gene021745:CDS 50.0%
TACATAGGAAGAGCTCCGAG+CGG - chr7.4:88179914-88179933 MS.gene021745:intron 50.0%
TGTGAACCATGGGATTTGCC+AGG - chr7.4:88178885-88178904 MS.gene021745:CDS 50.0%
TGTGTGGATAGGTTGTGCTC+AGG + chr7.4:88180010-88180029 None:intergenic 50.0%
TTGGCGAGGAGAAAAGTGAG+TGG - chr7.4:88179454-88179473 MS.gene021745:intron 50.0%
! AAGTGGTGACGAGTAGGGTT+TGG - chr7.4:88179435-88179454 MS.gene021745:intron 50.0%
! CCTGACCATTGAGGTTTGGT+TGG + chr7.4:88180917-88180936 None:intergenic 50.0%
! GCCAGCATTAGTAGCTCTGT+TGG + chr7.4:88179816-88179835 None:intergenic 50.0%
!! CACGTCTAGTGGTGTCATGT+TGG + chr7.4:88179586-88179605 None:intergenic 50.0%
GCTGCAAGTCGAGTAGAAGC+TGG + chr7.4:88181069-88181088 None:intergenic 55.0%
GTGACGAGTAGGGTTTGGCG+AGG - chr7.4:88179440-88179459 MS.gene021745:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 88178711 88181104 88178711 ID=MS.gene021745
chr7.4 mRNA 88178711 88181104 88178711 ID=MS.gene021745.t1;Parent=MS.gene021745
chr7.4 exon 88180909 88181104 88180909 ID=MS.gene021745.t1.exon1;Parent=MS.gene021745.t1
chr7.4 CDS 88180909 88181104 88180909 ID=cds.MS.gene021745.t1;Parent=MS.gene021745.t1
chr7.4 exon 88179779 88179894 88179779 ID=MS.gene021745.t1.exon2;Parent=MS.gene021745.t1
chr7.4 CDS 88179779 88179894 88179779 ID=cds.MS.gene021745.t1;Parent=MS.gene021745.t1
chr7.4 exon 88178711 88179244 88178711 ID=MS.gene021745.t1.exon3;Parent=MS.gene021745.t1
chr7.4 CDS 88178711 88179244 88178711 ID=cds.MS.gene021745.t1;Parent=MS.gene021745.t1
Gene Sequence

>MS.gene021745

ATGGGATCAAATGAGAATGTTTCCAGTCGAAAAATGGAAATTGAAAAGGTCAAATTTCCCGCTGGTTATCGATTCTTTCCAACTGATGAAGAGCTTATAAATCAATACCTTGTCAAGAAGGTTGATGACAATAGCTTCTGTGCTATAGATATTGATGAAGCTGATATGAATAAGTGTGAACCATGGGATTTGCCAGGTGAATTTAATGTTTTTTATAGGCAAATGTTAGTTGTTATTATAAATATTATATTAGTAGTCTGGATTTGAAAAACTACGTGTTGGATTTTTTTTGGACAAATGAACGATGTTGATAGAGTACATTGATACAACATACATTTAAAGTTGCTAAAAAAAGAGGATGAATTTACGAAAAAAATAGCAAAATACACAAGTCTACAAATATGACTATTCAAGTGTCAAAAATGACGCTTGCAGATCTATATCATTGATGACGCCAAGGTCATTGATTAGATCTGGACAAGATCAACGCTAATCTTTCAACCTGAATCAAATATACACCACATTAAGATGAAAAATGAAGAAAACACTATACAATGACATTAGGACGACATAATGATAAAAACATACAAAAGAAGACTTAAATTATGTGGAAATCACTTATTTCACTAAAAATGAAATAAAAACAATTTGGACTAGTGATTTCGGGACAAAATTAAACCTAAACCACCCTTCATTGGTAGATCTAGAAGAAAAAGAAGAAGAAAAGTGGTGACGAGTAGGGTTTGGCGAGGAGAAAAGTGAGTGGCTTAATTACGCCTTAGATATATTGTCGTTATCTTACTTTGATGGTTATATATTATCTCTTAATTACTATGTACCACTGACACATCATAATGTGTCAGGTATCTGCACCAACATGACACCACTAGACGTGGTTAAATTTACTTATTTTATTTTTTAAAGTGGTTATGAGTGTCGATTTGTCAGTGTCATGTCTAATGTATGTTTGTCTTTCAGCGTTTCATAACTTAATTATGCTTTCTTATTTTTTTTGGTTTATTCAGAGATGGCTAAAATGGGAGAAACAGAATGGTATTTTTTTTTTGTGTGAGGGACAAAAAATACCCAACTGGTCAAAGGACCAACAGAGCTACTAATGCTGGCTATTGGAAAGCAACAGGCAAAGACAAAGAGATTTACAAGGGAAATTCATTAATTGGGATGAAAAAAACACTGGTTTTCTACATAGGAAGAGCTCCGAGCGGTGAAAAATCCAACTGGGTCATGCATGAATACCGATTGGAGGGTAACTCACTCTCTAAGCACAACCTTTTTCCTGAGCACAACCTATCCACACATGGAATGGTAATATTGCTATATTTTTTATTACTTTGTTTTTGTCAATGATTTATACTCTGTCTACTGGTGAAAATTTGTTAGTGTATGTTCACATCGACCATGTGTTTGATAGAATTACGTTTTGTTATCGTGATTTTGAAGAAAAAAAATTACTTTTAAAGTTTAACAAAGTTACATTTTATCATTGTCAAACTTATCGTAGATCCAAACATTTACTAAAGATCTGTTAGTAACAAATTATAAAAATAATGATTTTGATATATATATATATATATATATATAATTACGAGATTAATTTCCTTTTTCTAAATAAAGTAAACTATTTTATGTTTGATCACCATAATAAAAGTAACTTTTTTAAAAAAAAATCAATTATAAAATATAAATTTTAGGGAAACTACTGGAAACAACTTTTTGTTTGAAACATATATAATATTCTTTCAAATAGTATTTTATTTTAAAAATACTTTAATAAATGAATAAAAACTAAATAATGATAGTTTTTTTTATTTAATGTTAATGAGTTAACCTTTTTTGTAGAGTGAATGGGTTGTCACTAGAGTCTTTGAGAAGCGTAATCATGGAAAGAAAATGAATGGTTCAAAACTTGGAAGGTCTAACTCCTCTAAAGAAGGACCATCAAATACTATTGCATCTCTATTGCCTCCATTGTTGGATTATTCTCCATACAATAGTGAAAATCAAATCACTAATTCTGATTTCTCTCATGTGTTGAATTCATTCACAAATCCAAATCAAACAGAGAAACCAAAAACACAAGAAGACAACATTGTTCATAACAATGAAACTAGTATCATGAACATTTCATCCTCTTCAAAACAAATGGATGTTTACCCTTTAACTGAAGCAACAATTGCTGATTCCAACCAAACCTCAATGGTCAGGAATTCATCAAACTTTTTCTTCTCCCAAGAGTTTTCTTTTGGGAGAGACTTTGATGCTGATGCTGATATCTCATCTGTGGTATATGGAAATGACATGCTTCAAAGGTGGTCGGGGAATCAAGATTTGTCACCAGCTTCTACTCGACTTGCAGCCAATGATAGCTTCTGA
Protein sequence

>MS.gene021745.t1

MGSNENVSSRKMEIEKVKFPAGYRFFPTDEELINQYLVKKVDDNSFCAIDIDEADMNKCEPWDLPGRAPSGEKSNWVMHEYRLEGNSLSKHNLFPEHNLSTHGMSEWVVTRVFEKRNHGKKMNGSKLGRSNSSKEGPSNTIASLLPPLLDYSPYNSENQITNSDFSHVLNSFTNPNQTEKPKTQEDNIVHNNETSIMNISSSSKQMDVYPLTEATIADSNQTSMVRNSSNFFFSQEFSFGRDFDADADISSVVYGNDMLQRWSGNQDLSPASTRLAANDSF