Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021819.t1 | AES77592.1 | 45.5 | 165 | 20 | 2 | 1 | 95 | 1 | 165 | 2.00E-24 | 122.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021819.t1 | Q38997 | 50.0 | 92 | 46 | 0 | 7 | 98 | 108 | 199 | 5.6e-20 | 99.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021819.t1 | G7L475 | 45.5 | 165 | 20 | 2 | 1 | 95 | 1 | 165 | 1.4e-24 | 122.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021819.t1 | MTR_7g012580 | 73.239 | 71 | 15 | 1 | 29 | 95 | 95 | 165 | 2.70e-29 | 107 |
MS.gene021819.t1 | MTR_6g012990 | 48.913 | 92 | 47 | 0 | 7 | 98 | 108 | 199 | 1.55e-23 | 95.5 |
MS.gene021819.t1 | MTR_6g012990 | 48.913 | 92 | 47 | 0 | 7 | 98 | 108 | 199 | 2.93e-23 | 95.5 |
MS.gene021819.t1 | MTR_6g048250 | 47.826 | 92 | 48 | 0 | 7 | 98 | 108 | 199 | 5.62e-23 | 94.0 |
MS.gene021819.t1 | MTR_6g048250 | 47.826 | 92 | 48 | 0 | 7 | 98 | 108 | 199 | 1.01e-22 | 94.0 |
MS.gene021819.t1 | MTR_6g048250 | 47.826 | 92 | 48 | 0 | 7 | 98 | 108 | 199 | 1.20e-22 | 94.0 |
MS.gene021819.t1 | MTR_3g099920 | 51.282 | 78 | 34 | 1 | 21 | 98 | 126 | 199 | 5.45e-20 | 86.3 |
MS.gene021819.t1 | MTR_6g012980 | 42.169 | 83 | 44 | 1 | 16 | 98 | 175 | 253 | 2.51e-15 | 72.8 |
MS.gene021819.t1 | MTR_5g075060 | 36.842 | 114 | 63 | 3 | 30 | 134 | 123 | 236 | 2.50e-13 | 67.4 |
MS.gene021819.t1 | MTR_4g131060 | 45.205 | 73 | 37 | 1 | 29 | 98 | 128 | 200 | 3.32e-13 | 67.0 |
MS.gene021819.t1 | MTR_3g466480 | 35.000 | 100 | 56 | 3 | 31 | 121 | 133 | 232 | 7.57e-13 | 65.9 |
MS.gene021819.t1 | MTR_5g088350 | 35.644 | 101 | 56 | 3 | 30 | 121 | 125 | 225 | 4.81e-12 | 63.2 |
MS.gene021819.t1 | MTR_5g088350 | 35.644 | 101 | 56 | 3 | 30 | 121 | 125 | 225 | 4.90e-12 | 63.5 |
MS.gene021819.t1 | MTR_4g114670 | 41.463 | 82 | 44 | 2 | 33 | 110 | 126 | 207 | 5.90e-12 | 63.2 |
MS.gene021819.t1 | MTR_5g088350 | 35.644 | 101 | 56 | 3 | 30 | 121 | 125 | 225 | 5.94e-12 | 63.2 |
MS.gene021819.t1 | MTR_4g114670 | 41.463 | 82 | 44 | 2 | 33 | 110 | 126 | 207 | 6.31e-12 | 63.2 |
MS.gene021819.t1 | MTR_3g466400 | 32.258 | 124 | 75 | 3 | 12 | 126 | 107 | 230 | 7.83e-12 | 62.8 |
MS.gene021819.t1 | MTR_1g103760 | 47.222 | 72 | 35 | 1 | 30 | 98 | 123 | 194 | 1.47e-11 | 62.0 |
MS.gene021819.t1 | MTR_8g086380 | 40.230 | 87 | 44 | 3 | 31 | 110 | 138 | 223 | 1.54e-11 | 62.0 |
MS.gene021819.t1 | MTR_5g067150 | 40.000 | 85 | 47 | 2 | 30 | 110 | 121 | 205 | 2.03e-11 | 61.6 |
MS.gene021819.t1 | MTR_5g067150 | 40.000 | 85 | 47 | 2 | 30 | 110 | 121 | 205 | 2.15e-11 | 61.6 |
MS.gene021819.t1 | MTR_5g067150 | 40.000 | 85 | 47 | 2 | 30 | 110 | 121 | 205 | 2.19e-11 | 61.6 |
MS.gene021819.t1 | MTR_3g072320 | 43.056 | 72 | 38 | 1 | 30 | 98 | 121 | 192 | 2.40e-11 | 61.6 |
MS.gene021819.t1 | MTR_4g128820 | 42.029 | 69 | 40 | 0 | 30 | 98 | 122 | 190 | 3.14e-11 | 61.2 |
MS.gene021819.t1 | MTR_4g029020 | 39.726 | 73 | 41 | 1 | 29 | 98 | 122 | 194 | 4.59e-11 | 60.8 |
MS.gene021819.t1 | MTR_7g072575 | 34.653 | 101 | 57 | 3 | 30 | 121 | 123 | 223 | 4.95e-11 | 60.5 |
MS.gene021819.t1 | MTR_1g013700 | 41.667 | 72 | 39 | 1 | 30 | 98 | 124 | 195 | 5.92e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021819.t1 | AT3G29160 | 47.826 | 92 | 48 | 0 | 7 | 98 | 109 | 200 | 3.39e-24 | 97.1 |
MS.gene021819.t1 | AT3G01090 | 50.000 | 92 | 46 | 0 | 7 | 98 | 131 | 222 | 5.92e-24 | 97.8 |
MS.gene021819.t1 | AT3G01090 | 50.000 | 92 | 46 | 0 | 7 | 98 | 108 | 199 | 6.02e-24 | 97.8 |
MS.gene021819.t1 | AT3G01090 | 50.000 | 92 | 46 | 0 | 7 | 98 | 108 | 199 | 6.02e-24 | 97.8 |
MS.gene021819.t1 | AT3G29160 | 47.826 | 92 | 48 | 0 | 7 | 98 | 109 | 200 | 9.93e-24 | 97.1 |
MS.gene021819.t1 | AT3G29160 | 47.826 | 92 | 48 | 0 | 7 | 98 | 109 | 200 | 9.93e-24 | 97.1 |
MS.gene021819.t1 | AT5G39440 | 48.780 | 82 | 37 | 2 | 17 | 98 | 122 | 198 | 6.13e-19 | 83.6 |
MS.gene021819.t1 | AT5G57630 | 40.580 | 69 | 41 | 0 | 30 | 98 | 123 | 191 | 3.89e-13 | 66.6 |
MS.gene021819.t1 | AT5G57630 | 40.580 | 69 | 41 | 0 | 30 | 98 | 123 | 191 | 4.13e-13 | 66.6 |
MS.gene021819.t1 | AT5G57630 | 40.580 | 69 | 41 | 0 | 30 | 98 | 35 | 103 | 4.13e-13 | 66.2 |
MS.gene021819.t1 | AT5G01810 | 36.275 | 102 | 56 | 3 | 29 | 121 | 122 | 223 | 3.33e-12 | 63.9 |
MS.gene021819.t1 | AT5G01810 | 36.275 | 102 | 56 | 3 | 29 | 121 | 122 | 223 | 3.74e-12 | 63.9 |
MS.gene021819.t1 | AT5G01810 | 36.275 | 102 | 56 | 3 | 29 | 121 | 122 | 223 | 3.74e-12 | 63.9 |
MS.gene021819.t1 | AT5G58380 | 35.644 | 101 | 56 | 3 | 30 | 121 | 123 | 223 | 6.27e-12 | 63.2 |
MS.gene021819.t1 | AT5G35410 | 40.244 | 82 | 45 | 2 | 33 | 110 | 126 | 207 | 7.13e-12 | 63.2 |
MS.gene021819.t1 | AT5G35410 | 40.244 | 82 | 45 | 2 | 33 | 110 | 126 | 207 | 7.14e-12 | 63.2 |
MS.gene021819.t1 | AT4G24400 | 44.286 | 70 | 38 | 1 | 30 | 98 | 121 | 190 | 7.79e-12 | 62.8 |
MS.gene021819.t1 | AT4G24400 | 44.286 | 70 | 38 | 1 | 30 | 98 | 121 | 190 | 1.09e-11 | 62.4 |
MS.gene021819.t1 | AT1G30270 | 37.931 | 87 | 48 | 2 | 30 | 110 | 46 | 132 | 1.44e-11 | 62.0 |
MS.gene021819.t1 | AT1G30270 | 37.931 | 87 | 48 | 2 | 30 | 110 | 143 | 229 | 1.64e-11 | 62.0 |
MS.gene021819.t1 | AT1G30270 | 37.931 | 87 | 48 | 2 | 30 | 110 | 143 | 229 | 1.86e-11 | 62.0 |
MS.gene021819.t1 | AT4G30960 | 35.644 | 101 | 56 | 3 | 30 | 121 | 135 | 235 | 2.20e-11 | 61.6 |
MS.gene021819.t1 | AT2G26980 | 39.726 | 73 | 41 | 1 | 29 | 98 | 125 | 197 | 2.43e-11 | 60.8 |
MS.gene021819.t1 | AT5G21326 | 41.667 | 72 | 39 | 1 | 30 | 98 | 125 | 196 | 2.54e-11 | 61.6 |
MS.gene021819.t1 | AT2G26980 | 40.278 | 72 | 40 | 1 | 30 | 98 | 126 | 197 | 3.71e-11 | 60.8 |
MS.gene021819.t1 | AT2G26980 | 40.278 | 72 | 40 | 1 | 30 | 98 | 126 | 197 | 4.18e-11 | 60.8 |
MS.gene021819.t1 | AT2G26980 | 40.278 | 72 | 40 | 1 | 30 | 98 | 126 | 197 | 4.31e-11 | 60.8 |
MS.gene021819.t1 | AT2G26980 | 40.278 | 72 | 40 | 1 | 30 | 98 | 136 | 207 | 4.81e-11 | 60.8 |
MS.gene021819.t1 | AT2G30360 | 36.047 | 86 | 49 | 2 | 31 | 110 | 135 | 220 | 6.64e-11 | 60.1 |
Find 38 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGAATATGTTAGTTGAAAT+TGG | 0.146112 | 7.1:+83518494 | MS.gene021819:CDS |
GATATGGCTGCTTAGGATTC+TGG | 0.195218 | 7.1:+83519027 | MS.gene021819:intron |
ACAGTATATTCTCAGGTTTA+AGG | 0.339212 | 7.1:-83518048 | None:intergenic |
CGTATTGTCTCCCTTCTCTA+TGG | 0.341746 | 7.1:-83518544 | None:intergenic |
AAAGTCGTTCCATGGGATTC+AGG | 0.345963 | 7.1:+83519122 | MS.gene021819:CDS |
TGGAACGACTTTCCTTCAAC+TGG | 0.348543 | 7.1:-83519111 | None:intergenic |
AATGTGAAGCTAGCTGATTT+TGG | 0.355745 | 7.1:+83518085 | MS.gene021819:CDS |
TCTGGATACTGAGGACTTCC+AGG | 0.362421 | 7.1:-83518151 | None:intergenic |
GATGTACAAACCTCAGGATC+TGG | 0.439271 | 7.1:-83518169 | None:intergenic |
CAGTAAACGTATAGTACATT+TGG | 0.444981 | 7.1:+83518024 | MS.gene021819:CDS |
AGGCAAGGTTTCCCAGTTGA+AGG | 0.468442 | 7.1:+83519099 | MS.gene021819:CDS |
CAACTTGACCGTATGGGATA+CGG | 0.472762 | 7.1:-83519056 | None:intergenic |
TGAAACGCAACTTGACCGTA+TGG | 0.502336 | 7.1:-83519063 | None:intergenic |
GCGTCCAACAGTATATTCTC+AGG | 0.527929 | 7.1:-83518055 | None:intergenic |
GTTGAAGGAAAGTCGTTCCA+TGG | 0.531030 | 7.1:+83519114 | MS.gene021819:CDS |
CTAATAGAACTCCATAGAGA+AGG | 0.537831 | 7.1:+83518533 | MS.gene021819:CDS |
TAAACCTGAGAATATACTGT+TGG | 0.550416 | 7.1:+83518051 | MS.gene021819:CDS |
TATCGAGTGGAAGACAAACT+TGG | 0.558501 | 7.1:+83517564 | MS.gene021819:CDS |
AAACTTGGTGAAGGTGTCGT+TGG | 0.572778 | 7.1:+83517579 | MS.gene021819:CDS |
TTGAAGGAAAGTCGTTCCAT+GGG | 0.572927 | 7.1:+83519115 | MS.gene021819:CDS |
TAATAGAACTCCATAGAGAA+GGG | 0.577461 | 7.1:+83518534 | MS.gene021819:CDS |
GGCGGTGTACATATCAAGAC+TGG | 0.577536 | 7.1:+83517600 | MS.gene021819:CDS |
GGTTTGAACCGTATCCCATA+CGG | 0.579519 | 7.1:+83519048 | MS.gene021819:CDS |
CACATGATTATTCAATGAGA+AGG | 0.581214 | 7.1:-83519173 | None:intergenic |
CTTGGTGAAGGTGTCGTTGG+CGG | 0.581328 | 7.1:+83517582 | MS.gene021819:CDS |
GAAACGCAACTTGACCGTAT+GGG | 0.583992 | 7.1:-83519062 | None:intergenic |
GATTATTCAATGAGAAGGCA+AGG | 0.584110 | 7.1:-83519168 | None:intergenic |
TCAACTGGGAAACCTTGCCT+CGG | 0.590593 | 7.1:-83519096 | None:intergenic |
CTATGCGAAATCATGCGTAA+TGG | 0.591763 | 7.1:+83518109 | MS.gene021819:CDS |
GTCACAGGAAAACTGTATGC+GGG | 0.595347 | 7.1:+83518344 | MS.gene021819:CDS |
AATACTGTACCTGAATCCCA+TGG | 0.596953 | 7.1:-83519131 | None:intergenic |
GGAACGACTTTCCTTCAACT+GGG | 0.612973 | 7.1:-83519110 | None:intergenic |
ACCTCAGGATCTGGATACTG+AGG | 0.620043 | 7.1:-83518160 | None:intergenic |
GTGGAAGACAAACTTGGTGA+AGG | 0.634028 | 7.1:+83517570 | MS.gene021819:CDS |
TCCTCAGTATCCAGATCCTG+AGG | 0.644016 | 7.1:+83518159 | MS.gene021819:CDS |
CATTACGCATGATTTCGCAT+AGG | 0.660361 | 7.1:-83518108 | None:intergenic |
TGTCACAGGAAAACTGTATG+CGG | 0.666323 | 7.1:+83518343 | MS.gene021819:CDS |
TAGAGAAGGGAGACAATACG+AGG | 0.733509 | 7.1:+83518547 | MS.gene021819:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGAAAAAAAATATTACTT+AGG | - | chr7.1:83517729-83517748 | None:intergenic | 10.0% |
!!! | TTAATTTTGATTTTATGATA+TGG | + | chr7.1:83519011-83519030 | MS.gene021819:intron | 10.0% |
!!! | AATTTTGGTTAAAAACAAAT+CGG | - | chr7.1:83518447-83518466 | None:intergenic | 15.0% |
!!! | ATTTTGGTTAAAAACAAATC+GGG | - | chr7.1:83518446-83518465 | None:intergenic | 20.0% |
!!! | ATTTTTTACCTTTGAAAATG+TGG | + | chr7.1:83518957-83518976 | MS.gene021819:intron | 20.0% |
!!! | TTCAATATTTTATAATCGCT+CGG | + | chr7.1:83517773-83517792 | MS.gene021819:intron | 20.0% |
!!! | TTTTGGTATTACTTTTGTTA+AGG | + | chr7.1:83518405-83518424 | MS.gene021819:intron | 20.0% |
!!! | TTTTTTACCTTTGAAAATGT+GGG | + | chr7.1:83518958-83518977 | MS.gene021819:intron | 20.0% |
! | AAAAGTAATACCAAAACTCA+CGG | - | chr7.1:83518401-83518420 | None:intergenic | 25.0% |
! | AATCACTTCATCAAATAAAG+CGG | - | chr7.1:83518755-83518774 | None:intergenic | 25.0% |
! | CTGAATATGTTAGTTGAAAT+TGG | + | chr7.1:83518494-83518513 | MS.gene021819:CDS | 25.0% |
!! | AATCTGGAAAATCACAATTT+TGG | - | chr7.1:83518462-83518481 | None:intergenic | 25.0% |
!! | TATTTTCTTCAGAAAATTCC+TGG | + | chr7.1:83518133-83518152 | MS.gene021819:CDS | 25.0% |
!! | TCAATATTTTATAATCGCTC+GGG | + | chr7.1:83517774-83517793 | MS.gene021819:intron | 25.0% |
!! | TGATTTTCCAGATTGATAAA+GGG | + | chr7.1:83518468-83518487 | MS.gene021819:intron | 25.0% |
!!! | TTTGTTTTCGACAAACTATA+TGG | - | chr7.1:83517637-83517656 | None:intergenic | 25.0% |
AATAACATACAGTAGCAATC+TGG | - | chr7.1:83518610-83518629 | None:intergenic | 30.0% | |
ACAGTATATTCTCAGGTTTA+AGG | - | chr7.1:83518051-83518070 | None:intergenic | 30.0% | |
ATAACATACAGTAGCAATCT+GGG | - | chr7.1:83518609-83518628 | None:intergenic | 30.0% | |
ATATCTTGAAGTACATCAAG+AGG | + | chr7.1:83517876-83517895 | MS.gene021819:intron | 30.0% | |
CAACTATGTTCAAGCTATAA+AGG | - | chr7.1:83518929-83518948 | None:intergenic | 30.0% | |
CAGTAAACGTATAGTACATT+TGG | + | chr7.1:83518024-83518043 | MS.gene021819:CDS | 30.0% | |
TAAACCTGAGAATATACTGT+TGG | + | chr7.1:83518051-83518070 | MS.gene021819:CDS | 30.0% | |
TAATAGAACTCCATAGAGAA+GGG | + | chr7.1:83518534-83518553 | MS.gene021819:CDS | 30.0% | |
! | AGAAGAGTATGAATCATAAG+AGG | - | chr7.1:83518312-83518331 | None:intergenic | 30.0% |
! | ATTTTATGATATGGCTGCTT+AGG | + | chr7.1:83519020-83519039 | MS.gene021819:intron | 30.0% |
! | GGTATCTAAAGTGAAAATGA+AGG | - | chr7.1:83518580-83518599 | None:intergenic | 30.0% |
! | GTGATTTTCCAGATTGATAA+AGG | + | chr7.1:83518467-83518486 | MS.gene021819:intron | 30.0% |
! | TACTTTTGTTAAGGCACAAA+AGG | + | chr7.1:83518414-83518433 | MS.gene021819:intron | 30.0% |
! | TAGAAAACCCACATTTTCAA+AGG | - | chr7.1:83518968-83518987 | None:intergenic | 30.0% |
!!! | TTCATACTCTTCTTTTTTGC+AGG | + | chr7.1:83518319-83518338 | MS.gene021819:intron | 30.0% |
AAGTACATCAAGAGGAACAA+AGG | + | chr7.1:83517884-83517903 | MS.gene021819:intron | 35.0% | |
ACTATAGATGTACAAACCTC+AGG | - | chr7.1:83518178-83518197 | None:intergenic | 35.0% | |
AGTACATCAAGAGGAACAAA+GGG | + | chr7.1:83517885-83517904 | MS.gene021819:intron | 35.0% | |
ATGAGCTTTGCATAGTATCA+AGG | - | chr7.1:83518992-83519011 | None:intergenic | 35.0% | |
CAAGTTGCGTTTCAAAAAGT+AGG | + | chr7.1:83519072-83519091 | MS.gene021819:CDS | 35.0% | |
CTAATAGAACTCCATAGAGA+AGG | + | chr7.1:83518533-83518552 | MS.gene021819:CDS | 35.0% | |
CTACGAGGTTATACCAAATA+GGG | + | chr7.1:83517817-83517836 | MS.gene021819:intron | 35.0% | |
TATTTGGTATAACCTCGTAG+AGG | - | chr7.1:83517817-83517836 | None:intergenic | 35.0% | |
TCAGAATCCCTTTATCAATC+TGG | - | chr7.1:83518478-83518497 | None:intergenic | 35.0% | |
TCTACGAGGTTATACCAAAT+AGG | + | chr7.1:83517816-83517835 | MS.gene021819:intron | 35.0% | |
TCTTGAAGCTGAGTTTCAAA+AGG | + | chr7.1:83518670-83518689 | MS.gene021819:intron | 35.0% | |
TGTCAACTAACCTCTACTTT+GGG | + | chr7.1:83517988-83518007 | MS.gene021819:intron | 35.0% | |
TTGTCAACTAACCTCTACTT+TGG | + | chr7.1:83517987-83518006 | MS.gene021819:intron | 35.0% | |
! | TAGTTTGTCGAAAACAAACG+TGG | + | chr7.1:83517639-83517658 | MS.gene021819:intron | 35.0% |
!! | AATGTGAAGCTAGCTGATTT+TGG | + | chr7.1:83518085-83518104 | MS.gene021819:CDS | 35.0% |
!!! | AGCGAGAAAATTTTTTCAGC+AGG | + | chr7.1:83517922-83517941 | MS.gene021819:intron | 35.0% |
AATACTGTACCTGAATCCCA+TGG | - | chr7.1:83519134-83519153 | None:intergenic | 40.0% | |
CATTACGCATGATTTCGCAT+AGG | - | chr7.1:83518111-83518130 | None:intergenic | 40.0% | |
CTATGCGAAATCATGCGTAA+TGG | + | chr7.1:83518109-83518128 | MS.gene021819:CDS | 40.0% | |
GAAGTCTAAACACCTACTTC+AGG | - | chr7.1:83518371-83518390 | None:intergenic | 40.0% | |
GAGGTTATACCAAATAGGGA+AGG | + | chr7.1:83517821-83517840 | MS.gene021819:intron | 40.0% | |
TAGGTGTTTAGACTTCGACA+GGG | + | chr7.1:83518375-83518394 | MS.gene021819:intron | 40.0% | |
TATCGAGTGGAAGACAAACT+TGG | + | chr7.1:83517564-83517583 | MS.gene021819:CDS | 40.0% | |
TCGACAAACTATATGGCAAC+AGG | - | chr7.1:83517630-83517649 | None:intergenic | 40.0% | |
TGTCACAGGAAAACTGTATG+CGG | + | chr7.1:83518343-83518362 | MS.gene021819:CDS | 40.0% | |
TTCAACAACCACTTTCCTCT+TGG | + | chr7.1:83518638-83518657 | MS.gene021819:intron | 40.0% | |
TTGAAGGAAAGTCGTTCCAT+GGG | + | chr7.1:83519115-83519134 | MS.gene021819:CDS | 40.0% | |
!! | CATTTTTGAGCGTTATCGAG+TGG | + | chr7.1:83517551-83517570 | MS.gene021819:CDS | 40.0% |
!!! | TCTTTTTTGCAGGTTGTCAC+AGG | + | chr7.1:83518329-83518348 | MS.gene021819:intron | 40.0% |
AAAGTCGTTCCATGGGATTC+AGG | + | chr7.1:83519122-83519141 | MS.gene021819:CDS | 45.0% | |
AGACTGCTGCGTATTTCACA+CGG | - | chr7.1:83518844-83518863 | None:intergenic | 45.0% | |
AGCTGAGTTTCAAAAGGCAG+TGG | + | chr7.1:83518676-83518695 | MS.gene021819:intron | 45.0% | |
CAACTTGACCGTATGGGATA+CGG | - | chr7.1:83519059-83519078 | None:intergenic | 45.0% | |
CAGAGCACGATTTACTCATC+TGG | - | chr7.1:83518899-83518918 | None:intergenic | 45.0% | |
CGTATTGTCTCCCTTCTCTA+TGG | - | chr7.1:83518547-83518566 | None:intergenic | 45.0% | |
CGTTTCAAAAAGTAGGACCG+AGG | + | chr7.1:83519079-83519098 | MS.gene021819:CDS | 45.0% | |
GAAACGCAACTTGACCGTAT+GGG | - | chr7.1:83519065-83519084 | None:intergenic | 45.0% | |
GAGTTTCAAAAGGCAGTGGT+GGG | + | chr7.1:83518680-83518699 | MS.gene021819:intron | 45.0% | |
GATATGGCTGCTTAGGATTC+TGG | + | chr7.1:83519027-83519046 | MS.gene021819:intron | 45.0% | |
GATGTACAAACCTCAGGATC+TGG | - | chr7.1:83518172-83518191 | None:intergenic | 45.0% | |
GCACAAATGCCTTCCCTATT+TGG | - | chr7.1:83517833-83517852 | None:intergenic | 45.0% | |
GCGTCCAACAGTATATTCTC+AGG | - | chr7.1:83518058-83518077 | None:intergenic | 45.0% | |
GGAACGACTTTCCTTCAACT+GGG | - | chr7.1:83519113-83519132 | None:intergenic | 45.0% | |
GGTTTGAACCGTATCCCATA+CGG | + | chr7.1:83519048-83519067 | MS.gene021819:CDS | 45.0% | |
GTAGGTGTTTAGACTTCGAC+AGG | + | chr7.1:83518374-83518393 | MS.gene021819:intron | 45.0% | |
GTCACAGGAAAACTGTATGC+GGG | + | chr7.1:83518344-83518363 | MS.gene021819:CDS | 45.0% | |
GTTGAAGGAAAGTCGTTCCA+TGG | + | chr7.1:83519114-83519133 | MS.gene021819:CDS | 45.0% | |
TAGAGAAGGGAGACAATACG+AGG | + | chr7.1:83518547-83518566 | MS.gene021819:CDS | 45.0% | |
TCAAGATCGTCTTTGCCAAG+AGG | - | chr7.1:83518656-83518675 | None:intergenic | 45.0% | |
TGAAACGCAACTTGACCGTA+TGG | - | chr7.1:83519066-83519085 | None:intergenic | 45.0% | |
TGAGTTTCAAAAGGCAGTGG+TGG | + | chr7.1:83518679-83518698 | MS.gene021819:intron | 45.0% | |
TGGAACGACTTTCCTTCAAC+TGG | - | chr7.1:83519114-83519133 | None:intergenic | 45.0% | |
! | GTGGAAGACAAACTTGGTGA+AGG | + | chr7.1:83517570-83517589 | MS.gene021819:CDS | 45.0% |
!! | AAACTTGGTGAAGGTGTCGT+TGG | + | chr7.1:83517579-83517598 | MS.gene021819:CDS | 45.0% |
ACCTCAGGATCTGGATACTG+AGG | - | chr7.1:83518163-83518182 | None:intergenic | 50.0% | |
AGGCAAGGTTTCCCAGTTGA+AGG | + | chr7.1:83519099-83519118 | MS.gene021819:CDS | 50.0% | |
CAAAAAGTAGGACCGAGGCA+AGG | + | chr7.1:83519084-83519103 | MS.gene021819:CDS | 50.0% | |
CATACAGTAGCAATCTGGGC+AGG | - | chr7.1:83518605-83518624 | None:intergenic | 50.0% | |
CCTCTACTTTGGGCAGAGTT+CGG | + | chr7.1:83517998-83518017 | MS.gene021819:intron | 50.0% | |
CGTCTTTGCCAAGAGGAAAG+TGG | - | chr7.1:83518649-83518668 | None:intergenic | 50.0% | |
GACTGCTGCGTATTTCACAC+GGG | - | chr7.1:83518843-83518862 | None:intergenic | 50.0% | |
GGCGGTGTACATATCAAGAC+TGG | + | chr7.1:83517600-83517619 | MS.gene021819:CDS | 50.0% | |
TCAACTGGGAAACCTTGCCT+CGG | - | chr7.1:83519099-83519118 | None:intergenic | 50.0% | |
TCCTCAGTATCCAGATCCTG+AGG | + | chr7.1:83518159-83518178 | MS.gene021819:CDS | 50.0% | |
TCTGGATACTGAGGACTTCC+AGG | - | chr7.1:83518154-83518173 | None:intergenic | 50.0% | |
CCGAACTCTGCCCAAAGTAG+AGG | - | chr7.1:83518001-83518020 | None:intergenic | 55.0% | |
CTGTATGCGGGACCTGAAGT+AGG | + | chr7.1:83518356-83518375 | MS.gene021819:intron | 55.0% | |
TCACGTCATACGCCTCTACG+AGG | + | chr7.1:83517802-83517821 | MS.gene021819:intron | 55.0% | |
! | TTCGACAGGGCCGTGAGTTT+TGG | + | chr7.1:83518388-83518407 | MS.gene021819:intron | 55.0% |
!! | CTTGGTGAAGGTGTCGTTGG+CGG | + | chr7.1:83517582-83517601 | MS.gene021819:CDS | 55.0% |
CAGTAGCAATCTGGGCAGGC+AGG | - | chr7.1:83518601-83518620 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 83517534 | 83519188 | 83517534 | ID=MS.gene021819 |
chr7.1 | mRNA | 83517534 | 83519188 | 83517534 | ID=MS.gene021819.t1;Parent=MS.gene021819 |
chr7.1 | exon | 83517534 | 83517621 | 83517534 | ID=MS.gene021819.t1.exon1;Parent=MS.gene021819.t1 |
chr7.1 | CDS | 83517534 | 83517621 | 83517534 | ID=cds.MS.gene021819.t1;Parent=MS.gene021819.t1 |
chr7.1 | exon | 83518014 | 83518180 | 83518014 | ID=MS.gene021819.t1.exon2;Parent=MS.gene021819.t1 |
chr7.1 | CDS | 83518014 | 83518180 | 83518014 | ID=cds.MS.gene021819.t1;Parent=MS.gene021819.t1 |
chr7.1 | exon | 83518341 | 83518373 | 83518341 | ID=MS.gene021819.t1.exon3;Parent=MS.gene021819.t1 |
chr7.1 | CDS | 83518341 | 83518373 | 83518341 | ID=cds.MS.gene021819.t1;Parent=MS.gene021819.t1 |
chr7.1 | exon | 83518479 | 83518568 | 83518479 | ID=MS.gene021819.t1.exon4;Parent=MS.gene021819.t1 |
chr7.1 | CDS | 83518479 | 83518568 | 83518479 | ID=cds.MS.gene021819.t1;Parent=MS.gene021819.t1 |
chr7.1 | exon | 83519042 | 83519188 | 83519042 | ID=MS.gene021819.t1.exon5;Parent=MS.gene021819.t1 |
chr7.1 | CDS | 83519042 | 83519188 | 83519042 | ID=cds.MS.gene021819.t1;Parent=MS.gene021819.t1 |
Gene Sequence |
Protein sequence |