AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021883

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021883.t1 MTR_7g013380 83.206 262 43 1 24 284 1 262 2.60e-148 418
MS.gene021883.t1 MTR_7g013380 65.263 95 32 1 25 118 174 268 1.66e-31 119
MS.gene021883.t1 MTR_4g133300 35.371 229 138 5 54 281 25 244 1.22e-34 126
MS.gene021883.t1 MTR_4g133300 34.118 170 104 5 28 195 81 244 1.84e-17 80.5
MS.gene021883.t1 MTR_4g133470 34.934 229 139 5 54 281 25 244 4.14e-33 122
MS.gene021883.t1 MTR_4g133470 34.706 170 103 5 28 195 81 244 3.81e-17 79.3
MS.gene021883.t1 MTR_3g006125 37.438 203 109 5 90 276 48 248 7.23e-27 105
MS.gene021883.t1 MTR_3g006125 40.854 164 88 4 34 190 87 248 1.13e-26 105
MS.gene021883.t1 MTR_3g006125 47.945 73 37 1 208 280 90 161 1.15e-11 63.9
MS.gene021883.t1 MTR_1g105955 43.796 137 70 2 140 276 33 162 8.17e-26 101
MS.gene021883.t1 MTR_1g105955 38.065 155 86 4 37 190 17 162 7.98e-20 85.1
MS.gene021883.t1 MTR_3g006185 36.416 173 103 3 114 281 1 171 8.67e-24 95.5
MS.gene021883.t1 MTR_3g006185 36.471 170 100 4 32 195 4 171 8.68e-22 90.5
MS.gene021883.t1 MTR_8g062700 37.427 171 98 5 107 272 25 191 1.09e-23 101
MS.gene021883.t1 MTR_8g062700 36.842 171 99 6 19 186 27 191 1.57e-21 95.1
MS.gene021883.t1 MTR_8g062700 40.860 93 54 1 193 284 25 117 8.22e-14 72.4
MS.gene021883.t1 MTR_8g062700 37.427 171 98 5 107 272 25 191 1.09e-23 101
MS.gene021883.t1 MTR_8g062700 36.842 171 99 6 19 186 27 191 1.54e-21 95.1
MS.gene021883.t1 MTR_8g062700 40.860 93 54 1 193 284 25 117 8.23e-14 72.4
MS.gene021883.t1 MTR_3g006105 36.994 173 100 4 114 280 1 170 1.64e-23 95.1
MS.gene021883.t1 MTR_3g006105 37.805 164 93 4 34 190 6 167 1.09e-22 92.8
MS.gene021883.t1 MTR_3g006105 45.000 80 43 1 208 287 9 87 1.10e-12 65.9
MS.gene021883.t1 MTR_3g006065 38.411 151 89 3 127 274 7 156 5.97e-23 94.0
MS.gene021883.t1 MTR_3g006065 38.971 136 80 3 55 188 22 156 3.28e-21 89.0
MS.gene021883.t1 MTR_3g006150 39.706 136 79 3 55 188 22 156 1.09e-22 92.4
MS.gene021883.t1 MTR_3g006150 37.748 151 90 3 127 274 7 156 1.16e-22 92.0
MS.gene021883.t1 MTR_1g104960 34.969 163 100 3 121 281 13 171 1.58e-22 92.4
MS.gene021883.t1 MTR_1g104960 32.099 162 103 4 34 192 11 168 1.69e-17 79.0
MS.gene021883.t1 MTR_1g104980 34.356 163 86 4 124 284 2 145 1.09e-20 87.4
MS.gene021883.t1 MTR_1g104980 35.404 161 86 5 39 198 2 145 4.16e-19 83.2
MS.gene021883.t1 MTR_5g036670 35.185 162 93 4 117 273 39 193 1.63e-19 89.4
MS.gene021883.t1 MTR_5g036670 36.170 141 81 4 52 187 57 193 2.15e-16 80.1
MS.gene021883.t1 MTR_5g036670 46.970 66 35 0 223 288 57 122 1.51e-11 65.5
MS.gene021883.t1 MTR_6g008970 35.256 156 95 3 119 272 61 212 6.20e-19 87.4
MS.gene021883.t1 MTR_6g008970 33.333 153 95 4 37 186 64 212 3.42e-15 76.3
MS.gene021883.t1 MTR_7g013410 33.784 148 88 5 40 185 2 141 6.64e-19 81.6
MS.gene021883.t1 MTR_7g013410 33.333 147 91 3 125 271 2 141 1.22e-18 80.9
MS.gene021883.t1 MTR_6g008995 33.766 154 98 2 119 272 35 184 2.40e-18 85.1
MS.gene021883.t1 MTR_6g008995 32.450 151 97 3 37 186 38 184 7.80e-16 77.8
MS.gene021883.t1 MTR_6g008995 33.594 128 83 1 145 272 2 127 1.06e-14 74.3
MS.gene021883.t1 MTR_6g008995 32.031 128 84 2 60 186 2 127 1.30e-12 68.2
MS.gene021883.t1 MTR_1g104937 45.455 77 40 1 122 198 13 87 2.72e-13 65.5
MS.gene021883.t1 MTR_1g104937 45.455 77 40 1 208 284 13 87 1.99e-12 63.2
MS.gene021883.t1 MTR_1g104937 43.750 80 42 2 34 112 10 87 7.26e-12 61.6
MS.gene021883.t1 MTR_1g104940 41.237 97 51 2 122 214 15 109 3.23e-13 65.5
MS.gene021883.t1 MTR_1g104940 43.750 80 43 1 205 284 12 89 9.95e-13 64.3
MS.gene021883.t1 MTR_1g105960 33.945 109 46 1 137 245 15 97 3.90e-12 62.4
MS.gene021883.t1 MTR_1g105010 41.667 84 45 2 122 205 17 96 1.20e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021883.t1 AT5G15020 40.260 154 88 3 119 272 50 199 2.45e-22 97.8
MS.gene021883.t1 AT5G15020 37.255 153 91 4 37 188 53 201 3.17e-18 85.5
MS.gene021883.t1 AT5G15020 40.260 154 88 3 119 272 50 199 2.61e-22 97.4
MS.gene021883.t1 AT5G15020 37.255 153 91 4 37 188 53 201 3.44e-18 85.5
MS.gene021883.t1 AT1G24190 38.272 162 94 5 113 272 6 163 1.08e-21 95.9
MS.gene021883.t1 AT1G24190 34.731 167 102 5 23 186 1 163 8.62e-19 87.0
MS.gene021883.t1 AT1G24190 38.272 162 94 5 113 272 6 163 1.13e-21 95.5
MS.gene021883.t1 AT1G24190 34.091 176 108 6 23 194 1 172 8.61e-19 87.0
MS.gene021883.t1 AT1G24190 38.272 162 94 5 113 272 6 163 1.27e-21 95.5
MS.gene021883.t1 AT1G24190 34.731 167 102 5 23 186 1 163 9.45e-19 87.0
MS.gene021883.t1 AT1G70030 35.897 156 90 4 119 271 9 157 4.38e-21 88.2
MS.gene021883.t1 AT1G70030 36.601 153 86 5 37 185 12 157 7.77e-20 84.7
MS.gene021883.t1 AT1G70060 36.196 163 97 4 113 272 6 164 4.31e-20 90.9
MS.gene021883.t1 AT1G70060 33.929 168 103 5 23 186 1 164 3.76e-18 85.1
MS.gene021883.t1 AT1G70060 36.196 163 97 4 113 272 6 164 4.31e-20 90.9
MS.gene021883.t1 AT1G70060 33.929 168 103 5 23 186 1 164 3.76e-18 85.1
MS.gene021883.t1 AT3G01320 35.714 154 94 3 119 271 55 204 4.49e-19 87.8
MS.gene021883.t1 AT3G01320 31.111 225 139 8 37 254 58 273 3.20e-17 82.4
MS.gene021883.t1 AT3G01320 47.619 63 33 0 223 285 71 133 5.29e-11 63.9
MS.gene021883.t1 AT3G01320 35.256 156 96 3 117 271 53 204 4.59e-19 87.8
MS.gene021883.t1 AT3G01320 31.111 225 139 8 37 254 58 273 3.48e-17 82.4
MS.gene021883.t1 AT3G01320 47.619 63 33 0 223 285 71 133 5.10e-11 63.9
MS.gene021883.t1 AT1G59890 33.824 136 88 1 137 272 59 192 4.81e-18 84.7
MS.gene021883.t1 AT1G59890 32.450 151 97 3 37 186 46 192 1.03e-15 77.8
MS.gene021883.t1 AT1G59890 33.824 136 88 1 137 272 59 192 4.98e-18 84.7
MS.gene021883.t1 AT1G59890 32.450 151 97 3 37 186 46 192 1.04e-15 77.8
MS.gene021883.t1 AT1G59890 33.824 136 88 1 137 272 59 192 4.99e-18 84.7
MS.gene021883.t1 AT1G59890 32.450 151 97 3 37 186 46 192 1.07e-15 77.8
MS.gene021883.t1 AT1G59890 33.824 136 88 1 137 272 59 192 5.04e-18 84.7
MS.gene021883.t1 AT1G59890 32.450 151 97 3 37 186 46 192 1.07e-15 77.8
MS.gene021883.t1 AT1G10450 33.813 139 90 1 137 275 98 234 3.92e-17 82.0
MS.gene021883.t1 AT1G10450 31.410 156 103 3 54 208 100 252 1.39e-14 74.7
MS.gene021883.t1 AT1G10450 33.813 139 90 1 137 275 47 183 4.99e-17 82.0
MS.gene021883.t1 AT1G10450 31.410 156 103 3 54 208 49 201 1.60e-14 74.3
MS.gene021883.t1 AT1G10450 33.813 139 90 1 137 275 47 183 4.99e-17 82.0
MS.gene021883.t1 AT1G10450 31.410 156 103 3 54 208 49 201 1.60e-14 74.3
MS.gene021883.t1 AT1G24230 25.203 246 156 7 23 263 1 223 2.49e-16 77.0
MS.gene021883.t1 AT1G24230 27.545 167 105 4 117 283 10 160 7.80e-13 67.4
MS.gene021883.t1 AT1G24200 32.026 153 99 4 119 271 12 159 1.59e-14 71.2
MS.gene021883.t1 AT1G24200 29.878 164 108 6 24 185 1 159 4.65e-11 61.2
MS.gene021883.t1 AT1G70030 34.146 123 74 3 119 238 20 138 7.85e-13 65.1
MS.gene021883.t1 AT1G70030 37.255 102 57 3 119 217 20 117 5.12e-12 62.4

Find 55 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAACAATTTCACGTTAAAT+TGG 0.277062 7.1:+82408176 MS.gene021883:CDS
ATAGATTTATTCAAGTTAAC+AGG 0.306329 7.1:+82407132 MS.gene021883:CDS
AACATCATTGACAAATTCTT+TGG 0.313079 7.1:-82407822 None:intergenic
CCTAGGGCAACCCGTGATAA+TGG 0.332496 7.1:+82407046 MS.gene021883:CDS
TAGAATTGATGATGCAAATC+TGG 0.365588 7.1:+82408053 MS.gene021883:intron
TAACTTTCTGAATGTCTTGA+AGG 0.368309 7.1:+82407530 MS.gene021883:CDS
AGAACATTGTGACGTCAAAA+AGG 0.380889 7.1:+82407082 MS.gene021883:CDS
TAACTTTCTGATTGTGTTGA+AGG 0.383182 7.1:+82407886 MS.gene021883:CDS
ATCTGAGGAGGAACAATCTC+TGG 0.399947 7.1:+82407422 MS.gene021883:CDS
AGTAGTTCAATCTTGATATA+AGG 0.418112 7.1:-82407724 None:intergenic
AAGGGATTATTTGAAGGTCA+TGG 0.456386 7.1:+82407345 MS.gene021883:CDS
CCATTATCACGGGTTGCCCT+AGG 0.461628 7.1:-82407046 None:intergenic
AAATCTCAGTAAATTCTTGA+AGG 0.476028 7.1:+82407326 MS.gene021883:CDS
AACTTCATTGACGAATTCCT+TGG 0.476864 7.1:-82407105 None:intergenic
GAATCTTGGTGAATTATTGA+AGG 0.480427 7.1:+82407679 MS.gene021883:CDS
AGGATTGACGCTGCGAATCT+TGG 0.486810 7.1:+82407665 MS.gene021883:intron
AGCTTAATTTCAAATCCATC+AGG 0.487502 7.1:-82407396 None:intergenic
TTCTTGAAGGGATTATTTGA+AGG 0.491097 7.1:+82407339 MS.gene021883:CDS
AGCTTGATTTCATATCCATC+AGG 0.493606 7.1:-82408141 None:intergenic
AGCTTGATTTCAAATCCATC+GGG 0.513708 7.1:-82407752 None:intergenic
TTATTGAAGGGATTATTTCA+AGG 0.513778 7.1:+82407692 MS.gene021883:CDS
ATAATGAAGAAAATATTTGA+AGG 0.513952 7.1:+82408081 MS.gene021883:CDS
AGATTGAACTTCATGCCTGA+TGG 0.514475 7.1:+82407381 MS.gene021883:CDS
AATCTTGGTGAATTATTGAA+GGG 0.514858 7.1:+82407680 MS.gene021883:CDS
AATCTCAGTAAATTCTTGAA+GGG 0.520509 7.1:+82407327 MS.gene021883:CDS
TTTATTGAAGGTCAAACCTA+GGG 0.525127 7.1:+82407030 MS.gene021883:intron
TGAAATTAAGCTTCCATCTG+AGG 0.529531 7.1:+82407407 MS.gene021883:CDS
TGAAATCAAGCTTCCATTGG+AGG 0.531076 7.1:+82408152 MS.gene021883:CDS
AAGCTTGATTTCAAATCCAT+CGG 0.533316 7.1:-82407753 None:intergenic
AGAATGTCCTTCCATTATCA+CGG 0.534339 7.1:-82407057 None:intergenic
AGAGATTCTTCCTCCTCCGA+TGG 0.538054 7.1:-82407776 None:intergenic
GAATGTCCTTCCATTATCAC+GGG 0.538479 7.1:-82407056 None:intergenic
AGAGATTGTTCCTCCTCAGA+TGG 0.549137 7.1:-82407420 None:intergenic
TTAAACTACTTCCTACCTGA+TGG 0.558050 7.1:+82408126 MS.gene021883:CDS
TGAAATTGTTCCTCCTCCAA+TGG 0.571267 7.1:-82408165 None:intergenic
AATCAAGCTTCCATCGGAGG+AGG 0.577026 7.1:+82407766 MS.gene021883:CDS
ATATGAAATCAAGCTTCCAT+TGG 0.577817 7.1:+82408149 MS.gene021883:CDS
TTGAACTACTTCATGCCCGA+TGG 0.579628 7.1:+82407737 MS.gene021883:CDS
ATTTATTCAAGTTAATCAGA+GGG 0.582516 7.1:+82407853 MS.gene021883:CDS
TGATGCATTACAAGAAACAA+AGG 0.583155 7.1:+82407186 MS.gene021883:CDS
TGAAATCAAGCTTCCATCGG+AGG 0.587204 7.1:+82407763 MS.gene021883:CDS
GATTTATTCAAGTTAATCAG+AGG 0.587296 7.1:+82407496 MS.gene021883:CDS
GATTTATTCAAGTTAATCAG+AGG 0.587296 7.1:+82407852 MS.gene021883:CDS
AAAATCAGAAAAGCGCCTCA+TGG 0.587985 7.1:+82406594 MS.gene021883:CDS
ATTTATTCAAGTTAATCAGA+GGG 0.591574 7.1:+82407497 MS.gene021883:CDS
GATTTATTCAAGTTAACAGG+AGG 0.594070 7.1:+82407135 MS.gene021883:CDS
TGAAGGATTACAAGAGACAA+AGG 0.594478 7.1:+82407903 MS.gene021883:CDS
CTAAAATGCAAGAGTGTGTG+AGG 0.605592 7.1:+82406567 None:intergenic
AATCAAGCTTCCATTGGAGG+AGG 0.611644 7.1:+82408155 MS.gene021883:CDS
AATTAAGCTTCCATCTGAGG+AGG 0.614296 7.1:+82407410 MS.gene021883:CDS
GGGCAACCCGTGATAATGGA+AGG 0.616033 7.1:+82407050 MS.gene021883:CDS
ATTTATTCAAGTTAACAGGA+GGG 0.617938 7.1:+82407136 MS.gene021883:CDS
ATTTGAAATCAAGCTTCCAT+CGG 0.624462 7.1:+82407760 MS.gene021883:CDS
TGATTTCATATCCATCAGGT+AGG 0.626891 7.1:-82408137 None:intergenic
TGAAGGATTACAAAACACAA+AGG 0.632152 7.1:+82407547 MS.gene021883:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATATAATAAAAAAATAG+TGG - chr7.1:82407588-82407607 None:intergenic 10.0%
!!! ATTGATATTTGTTAAATAAA+GGG + chr7.1:82406897-82406916 MS.gene021883:intron 10.0%
!!! TATTGATATTTGTTAAATAA+AGG + chr7.1:82406896-82406915 MS.gene021883:intron 10.0%
!!! TTTTTTATTATATTGTGAAA+TGG + chr7.1:82407592-82407611 MS.gene021883:intron 10.0%
!! ATAATGAAGAAAATATTTGA+AGG + chr7.1:82408081-82408100 MS.gene021883:CDS 15.0%
!! CATTACAATAAAAAAAATAG+TGG - chr7.1:82407227-82407246 None:intergenic 15.0%
!! CTTTATATACATAAATATGT+CGG - chr7.1:82406695-82406714 None:intergenic 15.0%
!! GCAATATAATAAAAAAATAG+TGG - chr7.1:82407944-82407963 None:intergenic 15.0%
!!! TAGTTTTTCTAATTTATCTA+TGG + chr7.1:82406937-82406956 MS.gene021883:intron 15.0%
!!! TTTCTGATTTTTTTTATTGA+AGG + chr7.1:82407018-82407037 MS.gene021883:intron 15.0%
!!! TTTTTTATTATATTGCGAAA+TGG + chr7.1:82407948-82407967 MS.gene021883:intron 15.0%
!! AACTAATTTATCTATCCTTT+CGG + chr7.1:82407279-82407298 MS.gene021883:intron 20.0%
!! ATTCTACAAAATATACCAAA+TGG - chr7.1:82408039-82408058 None:intergenic 20.0%
!!! AAATTTTTAATCATACCATG+AGG - chr7.1:82406612-82406631 None:intergenic 20.0%
!!! ATAGATTTATTCAAGTTAAC+AGG + chr7.1:82407132-82407151 MS.gene021883:CDS 20.0%
!!! ATTTATTCAAGTTAATCAGA+GGG + chr7.1:82407497-82407516 MS.gene021883:CDS 20.0%
!!! TATTAATTTGTCTATCCATT+TGG + chr7.1:82408021-82408040 MS.gene021883:intron 20.0%
!!! TGGATTCTATTAATTTTTGT+TGG + chr7.1:82407994-82408013 MS.gene021883:intron 20.0%
! AAATCTCAGTAAATTCTTGA+AGG + chr7.1:82407326-82407345 MS.gene021883:CDS 25.0%
! AACATCATTGACAAATTCTT+TGG - chr7.1:82407469-82407488 None:intergenic 25.0%
! AAGCAATTAGATTTCCAATT+GGG + chr7.1:82406867-82406886 MS.gene021883:intron 25.0%
! AATCTCAGTAAATTCTTGAA+GGG + chr7.1:82407327-82407346 MS.gene021883:CDS 25.0%
! AATCTTGGTGAATTATTGAA+GGG + chr7.1:82407680-82407699 MS.gene021883:CDS 25.0%
! AGTAGTTCAATCTTGATATA+AGG - chr7.1:82407727-82407746 None:intergenic 25.0%
! TATCAATAAAACAACCCAAT+TGG - chr7.1:82406884-82406903 None:intergenic 25.0%
! TTATTGAAGGGATTATTTCA+AGG + chr7.1:82407692-82407711 MS.gene021883:CDS 25.0%
!! ATTTATTCAAGTTAACAGGA+GGG + chr7.1:82407136-82407155 MS.gene021883:CDS 25.0%
!! GATTTATTCAAGTTAATCAG+AGG + chr7.1:82407496-82407515 MS.gene021883:CDS 25.0%
AAGAAAAGAAAGAAGAGATC+GGG - chr7.1:82406761-82406780 None:intergenic 30.0%
AAGCTTGATTTCAAATCCAT+CGG - chr7.1:82407756-82407775 None:intergenic 30.0%
AGCTTAATTTCAAATCCATC+AGG - chr7.1:82407399-82407418 None:intergenic 30.0%
ATATGAAATCAAGCTTCCAT+TGG + chr7.1:82408149-82408168 MS.gene021883:CDS 30.0%
ATCCTACAAAATATACCGAA+AGG - chr7.1:82407297-82407316 None:intergenic 30.0%
CAAGCAATTAGATTTCCAAT+TGG + chr7.1:82406866-82406885 MS.gene021883:intron 30.0%
GAAGAAAAGAAAGAAGAGAT+CGG - chr7.1:82406762-82406781 None:intergenic 30.0%
GAATCTTGGTGAATTATTGA+AGG + chr7.1:82407679-82407698 MS.gene021883:CDS 30.0%
GGAACAATTTCACGTTAAAT+TGG + chr7.1:82408176-82408195 MS.gene021883:CDS 30.0%
TAACTTTCTGAATGTCTTGA+AGG + chr7.1:82407530-82407549 MS.gene021883:CDS 30.0%
TAACTTTCTGATTGTGTTGA+AGG + chr7.1:82407886-82407905 MS.gene021883:CDS 30.0%
TGAAGGATTACAAAACACAA+AGG + chr7.1:82407547-82407566 MS.gene021883:CDS 30.0%
TGATGCATTACAAGAAACAA+AGG + chr7.1:82407186-82407205 MS.gene021883:CDS 30.0%
TTCTTGAAGGGATTATTTGA+AGG + chr7.1:82407339-82407358 MS.gene021883:CDS 30.0%
TTTATTGAAGGTCAAACCTA+GGG + chr7.1:82407030-82407049 MS.gene021883:intron 30.0%
! ATCCTTTCGGTATATTTTGT+AGG + chr7.1:82407292-82407311 MS.gene021883:intron 30.0%
! ATTTGAAATCAAGCTTCCAT+CGG + chr7.1:82407760-82407779 MS.gene021883:CDS 30.0%
! GACAAATTCTTTCGCATTTT+TGG - chr7.1:82407460-82407479 None:intergenic 30.0%
! GATTTATTCAAGTTAACAGG+AGG + chr7.1:82407135-82407154 MS.gene021883:CDS 30.0%
! TTTTATTGAAGGTCAAACCT+AGG + chr7.1:82407029-82407048 MS.gene021883:intron 30.0%
!! TAGAATTGATGATGCAAATC+TGG + chr7.1:82408053-82408072 MS.gene021883:intron 30.0%
AACTTCATTGACGAATTCCT+TGG - chr7.1:82407108-82407127 None:intergenic 35.0%
AAGGGATTATTTGAAGGTCA+TGG + chr7.1:82407345-82407364 MS.gene021883:CDS 35.0%
AGAACATTGTGACGTCAAAA+AGG + chr7.1:82407082-82407101 MS.gene021883:CDS 35.0%
AGAATGTCCTTCCATTATCA+CGG - chr7.1:82407060-82407079 None:intergenic 35.0%
AGATCGGGAAAGAACAAAAA+GGG - chr7.1:82406746-82406765 None:intergenic 35.0%
AGCTTGATTTCAAATCCATC+GGG - chr7.1:82407755-82407774 None:intergenic 35.0%
AGCTTGATTTCATATCCATC+AGG - chr7.1:82408144-82408163 None:intergenic 35.0%
ATAATGAGCACAAGGAAGTT+TGG - chr7.1:82406646-82406665 None:intergenic 35.0%
ATATGTCGGTCGTAAAGTTT+AGG - chr7.1:82406681-82406700 None:intergenic 35.0%
GTGTTCATCTGAATTCTTCT+AGG + chr7.1:82406792-82406811 MS.gene021883:intron 35.0%
TAATGAGCACAAGGAAGTTT+GGG - chr7.1:82406645-82406664 None:intergenic 35.0%
TATGTCGGTCGTAAAGTTTA+GGG - chr7.1:82406680-82406699 None:intergenic 35.0%
TGAAATTAAGCTTCCATCTG+AGG + chr7.1:82407407-82407426 MS.gene021883:CDS 35.0%
TGAAGGATTACAAGAGACAA+AGG + chr7.1:82407903-82407922 MS.gene021883:CDS 35.0%
TGATTTCATATCCATCAGGT+AGG - chr7.1:82408140-82408159 None:intergenic 35.0%
TTAAACTACTTCCTACCTGA+TGG + chr7.1:82408126-82408145 MS.gene021883:CDS 35.0%
AATTAAGCTTCCATCTGAGG+AGG + chr7.1:82407410-82407429 MS.gene021883:CDS 40.0%
ACTTCCTTGTGCTCATTATC+TGG + chr7.1:82406647-82406666 MS.gene021883:intron 40.0%
AGATTGAACTTCATGCCTGA+TGG + chr7.1:82407381-82407400 MS.gene021883:CDS 40.0%
GAATGTCCTTCCATTATCAC+GGG - chr7.1:82407059-82407078 None:intergenic 40.0%
GAGATCGGGAAAGAACAAAA+AGG - chr7.1:82406747-82406766 None:intergenic 40.0%
GGGAAAGAACAAAAAGGGAT+GGG - chr7.1:82406741-82406760 None:intergenic 40.0%
TCTTCCAGATAATGAGCACA+AGG - chr7.1:82406654-82406673 None:intergenic 40.0%
TGAAATCAAGCTTCCATTGG+AGG + chr7.1:82408152-82408171 MS.gene021883:CDS 40.0%
TGAAATTGTTCCTCCTCCAA+TGG - chr7.1:82408168-82408187 None:intergenic 40.0%
!! AAAATCAGAAAAGCGCCTCA+TGG + chr7.1:82406594-82406613 MS.gene021883:CDS 40.0%
!!! TGGCTTTGATTTTCCTGTGT+TGG + chr7.1:82406957-82406976 MS.gene021883:intron 40.0%
AATCAAGCTTCCATTGGAGG+AGG + chr7.1:82408155-82408174 MS.gene021883:CDS 45.0%
AGAGATTGTTCCTCCTCAGA+TGG - chr7.1:82407423-82407442 None:intergenic 45.0%
ATCTGAGGAGGAACAATCTC+TGG + chr7.1:82407422-82407441 MS.gene021883:CDS 45.0%
CGGGAAAGAACAAAAAGGGA+TGG - chr7.1:82406742-82406761 None:intergenic 45.0%
TGAAATCAAGCTTCCATCGG+AGG + chr7.1:82407763-82407782 MS.gene021883:CDS 45.0%
TTGAACTACTTCATGCCCGA+TGG + chr7.1:82407737-82407756 MS.gene021883:CDS 45.0%
TTGTGACGTCAAAAAGGCCA+AGG + chr7.1:82407088-82407107 MS.gene021883:CDS 45.0%
TTTGAACACATCGCCAACAC+AGG - chr7.1:82406973-82406992 None:intergenic 45.0%
! GGGAAAGAGAGAGTACACAA+AGG - chr7.1:82406721-82406740 None:intergenic 45.0%
!!! ATTTTTTTATTATATTTTGT+AGG + chr7.1:82407645-82407664 MS.gene021883:intron 5.0%
!!! TTTATTTTTAAATAATGAAA+TGG + chr7.1:82407974-82407993 MS.gene021883:intron 5.0%
AATCAAGCTTCCATCGGAGG+AGG + chr7.1:82407766-82407785 MS.gene021883:CDS 50.0%
AGAGATTCTTCCTCCTCCGA+TGG - chr7.1:82407779-82407798 None:intergenic 50.0%
AGGATTGACGCTGCGAATCT+TGG + chr7.1:82407665-82407684 MS.gene021883:intron 50.0%
CCTAGGGCAACCCGTGATAA+TGG + chr7.1:82407046-82407065 MS.gene021883:CDS 55.0%
! CCATTATCACGGGTTGCCCT+AGG - chr7.1:82407049-82407068 None:intergenic 55.0%
!! GGGCAACCCGTGATAATGGA+AGG + chr7.1:82407050-82407069 MS.gene021883:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 82406572 82408218 82406572 ID=MS.gene021883
chr7.1 mRNA 82406572 82408218 82406572 ID=MS.gene021883.t1;Parent=MS.gene021883
chr7.1 exon 82406572 82406615 82406572 ID=MS.gene021883.t1.exon1;Parent=MS.gene021883.t1
chr7.1 CDS 82406572 82406615 82406572 ID=cds.MS.gene021883.t1;Parent=MS.gene021883.t1
chr7.1 exon 82407040 82407207 82407040 ID=MS.gene021883.t1.exon2;Parent=MS.gene021883.t1
chr7.1 CDS 82407040 82407207 82407040 ID=cds.MS.gene021883.t1;Parent=MS.gene021883.t1
chr7.1 exon 82407314 82407568 82407314 ID=MS.gene021883.t1.exon3;Parent=MS.gene021883.t1
chr7.1 CDS 82407314 82407568 82407314 ID=cds.MS.gene021883.t1;Parent=MS.gene021883.t1
chr7.1 exon 82407667 82407924 82407667 ID=MS.gene021883.t1.exon4;Parent=MS.gene021883.t1
chr7.1 CDS 82407667 82407924 82407667 ID=cds.MS.gene021883.t1;Parent=MS.gene021883.t1
chr7.1 exon 82408056 82408218 82408056 ID=MS.gene021883.t1.exon5;Parent=MS.gene021883.t1
chr7.1 CDS 82408056 82408218 82408056 ID=cds.MS.gene021883.t1;Parent=MS.gene021883.t1
Gene Sequence

>MS.gene021883

ATGCAAGAGTGTGTGAGGAAACAAAATCAGAAAAGCGCCTCATGGTATGATTAAAAATTTAATTCACGCGCCCAAACTTCCTTGTGCTCATTATCTGGAAGAAAGCCCTAAACTTTACGACCGACATATTTATGTATATAAAGTGACCTTTGTGTACTCTCTCTTTCCCATCCCTTTTTGTTCTTTCCCGATCTCTTCTTTCTTTTCTTCTCTTCATTTTGTGTTCATCTGAATTCTTCTAGGTACTGTTCATCTAAACTGCTTCGTGTTCTTTTTTATATGCATATGAATAATCAAGCAATTAGATTTCCAATTGGGTTGTTTTATTGATATTTGTTAAATAAAGGGAGTTTAAATTGTTTGTTTAGTTTTTCTAATTTATCTATGGCTTTGATTTTCCTGTGTTGGCGATGTGTTCAAATTGTCTCATAAATGTTTACTAACATTTTCTGATTTTTTTTATTGAAGGTCAAACCTAGGGCAACCCGTGATAATGGAAGGACATTCTCAAGAACATTGTGACGTCAAAAAGGCCAAGGAATTCGTCAATGAAGTTAAGCATAGATTTATTCAAGTTAACAGGAGGGATAAGTATGATGACTTTTTGAATGTCTTGATGCATTACAAGAAACAAAGGTTTGATCATGTGTGACCACTATTTTTTTTATTGTAATGTTAGATTGATTTTATTAAATATTGTTGATTGTAACTAATTTATCTATCCTTTCGGTATATTTTGTAGGATCGATGCTGCAAATCTCAGTAAATTCTTGAAGGGATTATTTGAAGGTCATGGAGATCTTATATCAAGATTGAACTTCATGCCTGATGGATTTGAAATTAAGCTTCCATCTGAGGAGGAACAATCTCTGGAGCATTTTGAAACCAAAAATGCGAAAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGATAAGTATGATAACTTTCTGAATGTCTTGAAGGATTACAAAACACAAAGGTTTGATCATTTGTGACCACTATTTTTTTATTATATTGTGAAATGGATTTTTATTTATTATTGTTGATTGTAACTAATTTTTTTATTATATTTTGTAGGATTGACGCTGCGAATCTTGGTGAATTATTGAAGGGATTATTTCAAGGTCATAGAGACCTTATATCAAGATTGAACTACTTCATGCCCGATGGATTTGAAATCAAGCTTCCATCGGAGGAGGAAGAATCTCTTGAACATTCTGAAGAAAAAACTGCCAAAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGAAAAGTATGTTAACTTTCTGATTGTGTTGAAGGATTACAAGAGACAAAGGTTTGATCATTTGTGACCACTATTTTTTTATTATATTGCGAAATGGATTTTTATTTTTAAATAATGAAATGGATTCTATTAATTTTTGTTGGTTGTTATTAATTTGTCTATCCATTTGGTATATTTTGTAGAATTGATGATGCAAATCTGGTTAAAATAATGAAGAAAATATTTGAAGGTCATAGCGATTTAATATCAAGATTAAACTACTTCCTACCTGATGGATATGAAATCAAGCTTCCATTGGAGGAGGAACAATTTCACGTTAAATTGGAAGATGCTACAAGTTCTTGA
Protein sequence

>MS.gene021883.t1

MQECVRKQNQKSASWSNLGQPVIMEGHSQEHCDVKKAKEFVNEVKHRFIQVNRRDKYDDFLNVLMHYKKQRIDAANLSKFLKGLFEGHGDLISRLNFMPDGFEIKLPSEEEQSLEHFETKNAKEFVNDVKCRFIQVNQRDKYDNFLNVLKDYKTQRIDAANLGELLKGLFQGHRDLISRLNYFMPDGFEIKLPSEEEESLEHSEEKTAKEFVNDVKCRFIQVNQREKYVNFLIVLKDYKRQRIDDANLVKIMKKIFEGHSDLISRLNYFLPDGYEIKLPLEEEQFHVKLEDATSS