AlfalfaGEDB | MS.gene021927

M. sativa cultivar XinJiangDaYe / MS.gene021927

KEGG: -
GO: -
PFAM: PF03634.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021927.t1	XP_013447599.1	96.9	351	11	0	1	351	1	351	3.30E-172	614.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021927.t1	Q9S7W5	63.7	124	42	1	6	129	26	146	7.3e-35	149.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021927.t1	A0A072U750	96.9	351	11	0	1	351	1	351	2.4e-172	614.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene021927.t1	TF	TCP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021927.t1	MTR_7g015010	97.151	351	10	0	1	351	1	351	0.0	697
MS.gene021927.t1	MTR_6g015350	42.973	370	154	16	1	351	2	333	1.45e-62	203
MS.gene021927.t1	MTR_4g109660	62.185	119	42	2	1	118	1	117	3.71e-45	157
MS.gene021927.t1	MTR_3g026050	44.783	230	101	9	1	209	1	225	1.67e-44	157
MS.gene021927.t1	MTR_8g463380	60.526	76	30	0	51	126	48	123	2.56e-24	103
MS.gene021927.t1	MTR_4g079580	58.442	77	32	0	51	127	16	92	6.87e-24	100
MS.gene021927.t1	MTR_2g078200	61.644	73	28	0	51	123	14	86	9.70e-24	99.8
MS.gene021927.t1	MTR_2g090960	60.811	74	29	0	51	124	18	91	2.92e-23	99.0
MS.gene021927.t1	MTR_4g111935	31.330	233	127	9	58	264	133	358	3.58e-15	76.3
MS.gene021927.t1	MTR_6g017055	39.623	106	58	3	58	158	127	231	9.46e-14	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021927.t1	AT3G02150	75.000	100	25	0	30	129	47	146	1.66e-45	157
MS.gene021927.t1	AT3G02150	75.000	100	25	0	30	129	47	146	4.05e-45	158
MS.gene021927.t1	AT5G08070	71.717	99	24	2	25	123	4	98	5.56e-42	147
MS.gene021927.t1	AT5G08070	71.717	99	24	2	25	123	4	98	5.56e-42	147
MS.gene021927.t1	AT5G60970	83.750	80	12	1	43	122	49	127	6.14e-42	150
MS.gene021927.t1	AT1G30210	75.000	72	18	0	47	118	40	111	9.20e-30	116
MS.gene021927.t1	AT1G30210	75.000	72	18	0	47	118	40	111	9.20e-30	116
MS.gene021927.t1	AT4G18390	35.000	260	112	8	47	298	32	242	3.00e-27	110
MS.gene021927.t1	AT4G18390	35.000	260	112	8	47	298	32	242	3.00e-27	110
MS.gene021927.t1	AT1G53230	61.842	76	29	0	51	126	43	118	2.06e-25	105

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Find 61 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTTAATGCAATGGAGA+TGG	0.523566	7.1:-81421019	MS.gene021927:CDS
AACAATTGTTCAATTTCAAT+AGG	0.377158	7.1:-81421452	MS.gene021927:CDS
AACCAATCAACAACTTTGCT+AGG	0.547433	7.1:+81421585	None:intergenic
AACCTAGCAAAGTTGTTGAT+TGG	0.387978	7.1:-81421587	MS.gene021927:CDS
AACTTTATGATCTTCAAGAT+AGG	0.421843	7.1:-81421623	MS.gene021927:CDS
AAGTTGAAATTTGTTCCTAC+AGG	0.474911	7.1:+81421507	None:intergenic
AATTCTCTTGAAACTTCTTT+AGG	0.204373	7.1:+81421372	None:intergenic
AATTCTTCTCAAATGATGTT+AGG	0.334825	7.1:-81421066	MS.gene021927:CDS
AATTTGGCCAAACTGAAGGA+TGG	0.562622	7.1:+81420898	None:intergenic
ACAGGTGGAAAATTAGGTAA+TGG	0.536982	7.1:+81421525	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTTAATGCAATGGAGA+TGG	-	chr7.1:81421694-81421713	MS.gene021927:CDS	30.0%
ACTTGGTACTAATTACCAAT+GGG	-	chr7.1:81421532-81421551	MS.gene021927:CDS	30.0%
AGTGAACTCTTGTTCTTTAT+TGG	+	chr7.1:81421867-81421886	None:intergenic	30.0%
ATGATCTTCAAGATAGGTTA+GGG	-	chr7.1:81421096-81421115	MS.gene021927:CDS	30.0%
ATTCTTGGATCTTTCAATCT+TGG	+	chr7.1:81420963-81420982	None:intergenic	30.0%
CTTCAAGTCAAAATTCTTCT+TGG	-	chr7.1:81421309-81421328	MS.gene021927:CDS	30.0%
GATTGAGAGATAGAAGAATA+AGG	-	chr7.1:81421045-81421064	MS.gene021927:CDS	30.0%
GCTGAAAATTCTTCTCAATT+GGG	-	chr7.1:81421572-81421591	MS.gene021927:CDS	30.0%
GTAGGAACAAATTTCAACTT+TGG	-	chr7.1:81421209-81421228	MS.gene021927:CDS	30.0%
TATGATCTTCAAGATAGGTT+AGG	-	chr7.1:81421095-81421114	MS.gene021927:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	81420840	81421895	81420840	ID=MS.gene021927
chr7.1	mRNA	81420840	81421895	81420840	ID=MS.gene021927.t1;Parent=MS.gene021927
chr7.1	exon	81420840	81421895	81420840	ID=MS.gene021927.t1.exon1;Parent=MS.gene021927.t1
chr7.1	CDS	81420840	81421895	81420840	ID=cds.MS.gene021927.t1;Parent=MS.gene021927.t1

Gene Sequence

>MS.gene021927

ATGAATAAGAATTCAAAAGAAGATTTTCCATTGAAACAAGAGGTTCATCAAAATTCAAACGATCATGAAAAAGAAAAGGCTAGTTCACCATCATCAAGCTCCTTAGCTTCATCACAATGGCCAAGATTGAAAGATCCAAGAATTGTCAGAGTATCAAGAGCTTTTGGTGGAAAAGATAGACATAGCAAAGTATGCACAATAAGAGGATTGAGAGATAGAAGAATAAGGCTTTCAGTACCAACAGCTATTCAACTTTATGATCTTCAAGATAGGTTAGGGCTTAATCAACCTAGCAAAGTTGTTGATTGGTTGCTCAATGCAGCTAAACATGACATTGATCAACTTCCACCATTACCTAATTTTCCACCTGTAGGAACAAATTTCAACTTTGGTTTTCCATCTTCTAATGAACTCAACAATCAACAATTGTTCAATTTCAATAGGAACAATATTCATTGGGAAGGTTCAACTTCAAGTCAAAATTCTTCTTGGAAATCAAACCCTAAAGAAGTTTCAAGAGAATTGGTTAATGATAAACCAAATTACTTGATGAATAGTACTCAAGAAGATGAAAATATTAACAAGCAAGGAAGCAATATTGAAGTTCCTACTGCAAATGTTTTTCCAAATAATAACAATATGTTACAAAGACCAAATCACCCTTCATTTATTGGTTTATTAAATCCTATGCCACTTGGTACTAATTACCAATGGGGAGGTACTTCCAATGATGCTGAAAATTCTTCTCAATTGGGAAACAATGGCTTTATTACATCTTTGCCACCAATGTTGTCTTTATCAACTGGAAATTCTTCTCAAATGATGTTAGGAACAACACAATCATATTTTTCTTCAAATGTTAATGCAATGGAGATGGATCATCATCATCAAAGAGAAATCCACAACCATCATTATCATCAAATGTTGAGTTCATCAAGTTCTTCTCAGAATCCAATGACTAATTCTCTCAACAATCCATCCTTCAGTTTGGCCAAATTTCTACAAAACAGCAGAGAAAATTCATCCAATAAAGAACAAGAGTTCACTACAAAGTGA

Protein sequence

>MS.gene021927.t1

MNKNSKEDFPLKQEVHQNSNDHEKEKASSPSSSSLASSQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHDIDQLPPLPNFPPVGTNFNFGFPSSNELNNQQLFNFNRNNIHWEGSTSSQNSSWKSNPKEVSRELVNDKPNYLMNSTQEDENINKQGSNIEVPTANVFPNNNNMLQRPNHPSFIGLLNPMPLGTNYQWGGTSNDAENSSQLGNNGFITSLPPMLSLSTGNSSQMMLGTTQSYFSSNVNAMEMDHHHQREIHNHHYHQMLSSSSSSQNPMTNSLNNPSFSLAKFLQNSRENSSNKEQEFTTK