AlfalfaGEDB | MS.gene021971

M. sativa cultivar XinJiangDaYe / MS.gene021971

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021971.t1	KEH21738.1	71	334	62	4	1	306	1	327	6.80E-121	443.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021971.t1	Q3E8W4	36.1	332	166	7	9	304	491	812	9.2e-42	172.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021971.t1	A0A072TXY1	71.0	334	62	4	1	306	1	327	4.9e-121	443.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021971.t1	MTR_7g015800	70.958	334	62	4	1	306	1	327	8.21e-164	459
MS.gene021971.t1	MTR_7g015800	65.135	370	64	4	1	306	1	369	4.95e-161	453
MS.gene021971.t1	MTR_7g018130	58.683	334	93	6	1	291	1	332	1.22e-127	367
MS.gene021971.t1	MTR_7g015760	60.661	333	85	6	1	291	1	329	5.38e-127	366
MS.gene021971.t1	MTR_7g015750	58.480	342	89	8	1	291	4	343	6.25e-125	361
MS.gene021971.t1	MTR_7g015760	57.958	333	80	6	1	291	1	315	2.09e-118	344
MS.gene021971.t1	MTR_7g073660	37.152	323	159	8	6	291	508	823	7.03e-53	186
MS.gene021971.t1	MTR_5g047070	36.066	305	154	8	24	291	257	557	1.61e-50	176
MS.gene021971.t1	MTR_6g015805	37.621	311	145	8	22	292	518	819	2.77e-50	178
MS.gene021971.t1	MTR_5g047120	36.066	305	154	8	24	291	498	798	6.83e-50	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene021971.t1	AT5G38990	37.931	319	160	7	10	292	496	812	3.58e-51	181
MS.gene021971.t1	AT3G51550	35.514	321	167	7	6	291	503	818	5.56e-51	181
MS.gene021971.t1	AT5G39000	37.618	319	161	7	10	292	489	805	1.59e-50	179
MS.gene021971.t1	AT5G28680	36.364	319	160	6	9	291	491	802	4.82e-50	177
MS.gene021971.t1	AT5G28680	36.364	319	160	6	9	291	491	802	4.82e-50	177
MS.gene021971.t1	AT3G04690	35.435	333	169	7	9	305	487	809	1.79e-49	176
MS.gene021971.t1	AT5G54380	35.202	321	167	7	6	291	477	791	1.96e-48	173
MS.gene021971.t1	AT5G59700	36.000	300	151	8	24	288	467	760	5.81e-46	166
MS.gene021971.t1	AT3G46290	34.494	316	164	7	9	288	455	763	9.50e-46	165
MS.gene021971.t1	AT1G30570	36.066	305	154	9	23	292	504	802	3.23e-44	161

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Find 54 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTTGAAATATGCAT+TGG	0.504966	7.1:-80520256	MS.gene021971:CDS
AAAGGTTATGTCAAACATAA+TGG	0.427207	7.1:-80520514	MS.gene021971:CDS
AAATGTTGAACATTGTTTCT+TGG	0.277907	7.1:+80520642	None:intergenic
AAGGAATTTACCACCAACTT+CGG	0.503752	7.1:+80520063	None:intergenic
AATCCAAATCGTGAGAGTTT+TGG	0.353062	7.1:+80520133	None:intergenic
AATCTCTCTCATGGAAGAAA+AGG	0.443511	7.1:-80520273	MS.gene021971:CDS
ACAAGGGAAGCTCTCTAAAT+CGG	0.433806	7.1:-80520104	MS.gene021971:CDS
ACCAAATGAAAGACCAGCTA+TGG	0.458376	7.1:-80516453	MS.gene021971:CDS
ACCAGCTATGGGTGAGGTTG+AGG	0.453206	7.1:-80516441	MS.gene021971:CDS
ACCTCAACCTCACCCATAGC+TGG	0.548466	7.1:+80516440	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGCTTGAAATATGCAT+TGG	-	chr7.1:80516763-80516782	MS.gene021971:intron	30.0%
AACAAGTACAGAGATGAATA+CGG	+	chr7.1:80519029-80519048	None:intergenic	30.0%
AATATCCATCCATCTACAAA+AGG	+	chr7.1:80517191-80517210	None:intergenic	30.0%
AATCAAAGATGAACTCAGAA+TGG	-	chr7.1:80519566-80519585	MS.gene021971:intron	30.0%
AATGTATCCGGTCTATATAT+AGG	+	chr7.1:80517407-80517426	None:intergenic	30.0%
AATTCAATTCACATCTGTTC+CGG	+	chr7.1:80517958-80517977	None:intergenic	30.0%
AATTGACCTCATGTAATATC+TGG	+	chr7.1:80517894-80517913	None:intergenic	30.0%
ATTATCCAATAGCATTGTTG+CGG	-	chr7.1:80516536-80516555	MS.gene021971:CDS	30.0%
CAAAAATAAAGTCAAATGGG+TGG	-	chr7.1:80518909-80518928	MS.gene021971:intron	30.0%
CACACCTTAATAAAAACTAG+TGG	+	chr7.1:80518310-80518329	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	80516343	80520698	80516343	ID=MS.gene021971
chr7.1	mRNA	80516343	80520698	80516343	ID=MS.gene021971.t1;Parent=MS.gene021971
chr7.1	exon	80520428	80520698	80520428	ID=MS.gene021971.t1.exon1;Parent=MS.gene021971.t1
chr7.1	CDS	80520428	80520698	80520428	ID=cds.MS.gene021971.t1;Parent=MS.gene021971.t1
chr7.1	exon	80520074	80520346	80520074	ID=MS.gene021971.t1.exon2;Parent=MS.gene021971.t1
chr7.1	CDS	80520074	80520346	80520074	ID=cds.MS.gene021971.t1;Parent=MS.gene021971.t1
chr7.1	exon	80516343	80516728	80516343	ID=MS.gene021971.t1.exon3;Parent=MS.gene021971.t1
chr7.1	CDS	80516343	80516728	80516343	ID=cds.MS.gene021971.t1;Parent=MS.gene021971.t1

Gene Sequence

>MS.gene021971

ATGCTTGCAAAATACTCAAAGCATAAAAGTTCGTCCAAGAAACAATGTTCAACATTTATAAAAGAGCTATGCCATGAGTTTTCTCTGGACAAGCTTAAGAAAGCTACTAATAACTTTCACGAAGATCGAAAAATTGGAGAAGTAGACGAAAATGAAGTGTACAAAGGTTATGTCAAACATAATGGTGAAAATGATTATCCAATAGCATTGTTGCGGATAACAGATATATACATACAACGAGAAGAGTTCAAGAATGAAATAGAATTCAACTGTCAGCTTTGTCACCCAAATTTGATATCTTTGATAGGATTTTGTGACCAAAAAAATGAGAAAATTCTCGTGTATAAATAAGATGAAATGGTCAATGACTCTCTCCGTGATCACTTATGTTCAAGGGATATGGAATCTCTCTCATGGAAGAAAAGGCTTGAAATATGCATTGGAGCTGCAAAAGGAATACACTACCTTCACACTGGAGCAAAGCGCACGATTTTTCACCGTGACGTAAAGCCAGGCAGCATTCTTTTGAATAACAATATGGAACCAAAACTCTCACGATTTGGATTATCCTTACAAGGGAAGCTCTCTAAATCGGAGTCAATACCAATTAAAGCCGAAGTTGGTGGTAAATTCCTTTTTTATTTTTATTTTTAAAAGTAAACACTCAAATTAGCTATGCACATTCTTATTTACTCATCAATGAAAGCTGAGTGAGAATTATCCATCTGAATTGAGATTGATAAAAACTATTCATTTGTCTTCAATTGTTTATAACATAAATAGTGGAATACAAATGAATGATTTTAATTTATGTCAATTTAGATGGGTAACATAACATTTACCTACCTTTTGTAGATGGATGGATATTGGTGTTGTCACTTTTTTTATTTTAAGTTTTATCTCCTTTAAATTAGGATTTGAGTTTTTTTAAATACAATTCCTACCTTCAGTGGCAGAGGAAAAAAAAAATTGGACGGGTCGCCAAAATAAACTACTCCCTCCGGTCACATTTATAAGCAAAAAGTAATTTTTTAAGTTCATTGAATGGCTAATGTATCTAACCTATATATAGACCGGATACATTAGATATTCAATGAATGTAAAAAGTTGTTTTTTGCTTATAAATGTGACCGGAGGGAGTACGATATAGTATACTCCCTCCGTCCCTTAATGTAACCTCCCTTTGCTTTTTTCACATTTCTTAAGAAAAGTTGTCAGTGTAATTATTATGTCTGTTTTGTGTGTTAATATTACCATATTGTCCTTTGTTTGTATATGTATTAAGACTTTTTCTAGTTACGCCCCAAAAAAATCTAGTTACACCCAAAATCTCTTAAAATTAAATCATAATACCCATAAAGCCCTTGTTCATAATACTCACAAACATCCATTGAAATTGATCGATTTTGATGAACAGTTAAAGATCGAAGCATAAGGTCTTCTATCAATACTCAATTCCATAATTAAATCACCATTTCAGTGATTTCTATGTTATTTTATTTTTACTTTTTTGACACAATTAACATACCACATGTAAAATCAGAATTTCCAGATATTACATGAGGTCAATTAACATATGCTTACGATGACTTGAAGGTTTTGGGTAACACCACCGGAACAGATGTGAATTGAATTGTATGTATATGTGAATTTAAAACATGAATTAAATTGCAAGATGTGGCATAGGCATCTGATTGTTTTGTAACATATGGTTATTTACTTATTCATGTACATGTCAAGCGTGAATTGAATCGTTACTAAAAAAAGCGTGAATTGAATCTTCAAAGTAATCCTGTTTAACCCTGTCAGCATTGGTTCGAGGCTTCGAGCAAAGTAATCTAGAAATAACAGCGTCTGAATTGAATAAGCCAGGATCAAGGGTATACGTAAACTGAAATAACATATATGATTTAAAGAAATTGAGAGTGATATATTTATATATATAGGGGTTTGCTAGGATACACCCACTAGTTTTTATTAAGGTGTGTTTTAGCAAAGATATAACTAAAAAGTTGTTAAATACACCTTAAGGTGAATGTTGCTAAAACACACCTTCTTAAAAATAAGTGGGTGTACATTAGCAACTCCTATAGGCATTTGCTAGAATACACCCACTTATTTTTTAGAAGATGTGTTTTAGCAAGTTATAACTAAAAAGTAATTAAATACACCCTAAGGTGTAGCTTGCTAAAACACTCCCACATAAAAACTAGTGGGTGTGTTCTAGCAAATCCCATATATATATATATATGTGTGTGTGTGTGTGTGTGTGAATTCAATTTACTTGACTGTACATGAACTAAATTTTTTTTTTGAAGAAATGAACTAAATTAACTTGTATTTTGAAGAAAAAACTAGAATAGGAGAATAATCTAAAAATGAAATTAAGGGTATTTTTGTCTGAAAGGGGTGTAACCTAAAGTTCATGGGGTGTAACTAGAATGACTCATGTATTAAATTTGACTTTTTAAATTTCAAGATAAGTTATTAGTATTAATTAGGGGTATGTTTAGGAAAAAAATAATAAATGCATCTAGTAATTTGAAAAGGGGTTTAGATTTAGGGACAAAAATAAAGTCAAATGGGTGGTTAGATATAGGAACGGAGGGAGATTAAATCACTCACTTAACAGTGCACGTGCCTTTGTCTTTGTTTAGCGTGCCTCTTTTCCTTGTTCCTGCTTCCGTATTCATCTCTGTACTTGTTCTTCCTCCCAACAAAACACTAATACCTTCCAAAATCACTGTACTGTAATGGTTGAAGTTAGCTCAATCCATGTCAAAGATCCCTAATTCTTTCTACAATCAGAAACCCATTATAATTTTTCGAGTTTTTTCTTCATAAAATTTTAATGGGTTTTTTCTTCTTCATCAAAGATTAAGGGTCTCTTAATTTTTTGGAGTACTTTTCTTCATCGATGATTCATGATAAGAAACCCCTCAAATATTCAAAATGAATGGCTTGGAACCCGTTTTTTTTTTTTTTAGGTCAGAGGGAAAATTGATACTTGTGTTTGCGAGATTCAATTAAACAAAAAGACTTGCGGCAGCTGTTGAAATTTCGTTTTTCAAATCTCATGACTCTCAAATCTGAACAAAAAAAAAAAACCATATGCTTTCTCATAGCTGCATAAATGGCACCAATTTTATGGATTACAATGATTAAAACCATGACTATAGGAGTTTTTTTCTTAACCAAAGATTTTTTTTTTATACAAATTCTTAATCAAAGATGAACTCAGAATGGAGCACAACATCGATGAACTGGAAAAAGGAATTTGATATGACTTTCAAATCTGAACAAAGAAGTTTAATGGCGTGTGAAGAAAATAAGAAAAAGCAGGCACGTGCAGATTTTTTAATTAAAAAAGAGAGATCAAAGTTCATTTTCATCCAATGGCTAATATTTGATGCTCTCACCTCTCATTTTAAGCCCTCCTCTCATTTGATACATCCCATATATATATATATACACACACACACACACACACACAAAAATTTATGTTTTCATAAGCATTAAATACAATGTTGACCATAAAAAAATAAATCACATACTTTAAAAATTCAAAATAATCATTTGTGCATTTCGAATGACTTGATAATGTAATAGTAATGCCTATTGATAATGTTTTATATTTTATACTTACAAATTAGTTTTAATTCAACCTTACAATATAGTTTATGTTAGGTACCACTTTTATTGAATTTTTTAATGTAGGACCTAAGTTTTTTTTTTTTTCCTTTCAATGAGAACGATAAAAGTCGCACATGTTAGACCCTAATGTGGGACTAGCGTGTTCTAATATTTTCATTCTCGGGCATTAATTATGTAAAAAATAAAATAAAAAATTCTTTAAGAACTGATATGGTATATGCATTTTTTGTCGTGAACTAATTTTGGCCTTTTCACATATTTTAATAACTTGGCTGCAGATAATTGTAGAAGTTAGACTAAATGCTTTTGCTGACAGGTACATTGGGTTTCATGGCACCAGAGTATATGGAAACCGAAACTTTCACAGATAAATGCGACGTTTTCTCCTTTGGTATGGTTCTACTTCAAGTAATTTCATGCATAAACGACTTTTACACCATCATTGAGAAGATGAACATGTTAGAGAGGTTCCCAGCTGATGAAATTATTGATCCCATTCTCACGAGATTGATTTCACCGGAATGTTTGGAAGTGTTCATGGATATCATGAAAAGATGCTTGAATATAGAACCAAATGAAAGACCAGCTATGGGTGAGGTTGAGGTTGAACTTGAGCATGCTTTGGCACTGCAGGAGGAAGCAGAGCGTGTGACAAGTATAACTTTTTTCACACCAACTAATGGTGCCCTAAAACTTCTGTGA

Protein sequence

>MS.gene021971.t1

MLAKYSKHKSSSKKQCSTFIKELCHEFSLDKLKKATNNFHEDRKIGEVDENEVYKGYVKHNGENDYPIALLRITDIYIQREEFKNEIEFNYEMVNDSLRDHLCSRDMESLSWKKRLEICIGAAKGIHYLHTGAKRTIFHRDVKPGSILLNNNMEPKLSRFGLSLQGKLSKSESIPIKAEVGGTLGFMAPEYMETETFTDKCDVFSFGMVLLQVISCINDFYTIIEKMNMLERFPADEIIDPILTRLISPECLEVFMDIMKRCLNIEPNERPAMGEVEVELEHALALQEEAERVTSITFFTPTNGALKLL