AlfalfaGEDB | MS.gene022008

M. sativa cultivar XinJiangDaYe / MS.gene022008

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022008.t1	XP_003621577.1	95.1	349	15	1	1	349	1	347	6.20E-163	583.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022008.t1	Q9CAA4	40.1	304	139	6	49	345	42	309	1.5e-40	168.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022008.t1	G7KRZ1	95.1	349	15	1	1	349	1	347	4.5e-163	583.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene022008.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022008.t1	MTR_7g017320	94.842	349	16	1	1	349	1	347	0.0	610
MS.gene022008.t1	MTR_7g017320	94.815	270	12	1	1	270	1	268	4.10e-162	454
MS.gene022008.t1	MTR_5g048350	40.964	332	159	8	27	345	25	332	7.56e-65	209
MS.gene022008.t1	MTR_4g110040	40.489	368	177	14	1	345	86	434	2.15e-57	192
MS.gene022008.t1	MTR_4g110040	40.489	368	177	14	1	345	218	566	4.23e-56	192
MS.gene022008.t1	MTR_5g048350	39.157	332	156	9	27	345	25	323	7.08e-56	185

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022008.t1	AT1G69010	41.304	322	138	9	3	313	2	283	5.04e-58	190
MS.gene022008.t1	AT5G38860	38.284	303	153	7	47	346	27	298	7.40e-54	179
MS.gene022008.t1	AT5G08130	37.134	307	155	7	1	303	103	375	4.40e-45	159
MS.gene022008.t1	AT5G08130	36.808	307	157	7	1	303	103	376	1.32e-44	158
MS.gene022008.t1	AT5G08130	37.134	307	155	7	1	303	223	495	5.61e-44	159
MS.gene022008.t1	AT5G08130	37.134	307	155	7	1	303	227	499	5.70e-44	159
MS.gene022008.t1	AT5G08130	36.808	307	157	7	1	303	227	500	1.48e-43	157
MS.gene022008.t1	AT5G08130	36.808	307	157	7	1	303	223	496	1.57e-43	157
MS.gene022008.t1	AT5G08130	36.808	307	157	7	1	303	223	496	1.58e-43	157
MS.gene022008.t1	AT5G08130	36.808	307	157	7	1	303	223	496	1.58e-43	157

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Find 80 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCTAGGTCTGCTAA+AGG	0.571124	7.1:-79694214	MS.gene022008:CDS
AACAACAACAATAATAACAA+TGG	0.621353	7.1:-79694118	MS.gene022008:intron
AACCTTTGAGCTATATTGAC+AGG	0.466561	7.1:+79689805	None:intergenic
AAGGTGGATGAACCCATCAG+AGG	0.649580	7.1:-79693926	MS.gene022008:CDS
AATCAAGCAATGGCATGTTC+AGG	0.511565	7.1:-79688653	MS.gene022008:CDS
AATCGCATTTGCATGGTCAG+GGG	0.653290	7.1:+79691781	None:intergenic
ACAATATGATTGTCCTTGTT+TGG	0.394063	7.1:+79691643	None:intergenic
ACCATACCACCGCTAACAAC+CGG	0.455738	7.1:+79691745	None:intergenic
ACCCAAGCGCTACAATCTTC+AGG	0.469010	7.1:-79689899	MS.gene022008:CDS
ACCCATGGAATTAATTTAGT+TGG	0.355118	7.1:+79693033	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACAGAGAAGGAATAG+TGG	+	chr7.1:79692044-79692063	None:intergenic	30.0%
AACGGTACAAATATATAACC+AGG	+	chr7.1:79690171-79690190	None:intergenic	30.0%
AAGGAATTGTGAATCATTGT+TGG	+	chr7.1:79688752-79688771	None:intergenic	30.0%
AAGTTCTTCACTTACGTAAA+AGG	+	chr7.1:79690063-79690082	None:intergenic	30.0%
ACAATATGATTGTCCTTGTT+TGG	+	chr7.1:79691160-79691179	None:intergenic	30.0%
ACATTGAGTAGAACAGATAA+TGG	+	chr7.1:79693716-79693735	None:intergenic	30.0%
ACCCATGGAATTAATTTAGT+TGG	+	chr7.1:79689770-79689789	None:intergenic	30.0%
ACGCAATAATGATGTGATAA+AGG	+	chr7.1:79691726-79691745	None:intergenic	30.0%
ACGGTACAAATATATAACCA+GGG	+	chr7.1:79690170-79690189	None:intergenic	30.0%
AGCCAACTAAATTAATTCCA+TGG	-	chr7.1:79689765-79689784	MS.gene022008:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	79688589	79694233	79688589	ID=MS.gene022008
chr7.1	mRNA	79688589	79694233	79688589	ID=MS.gene022008.t1;Parent=MS.gene022008
chr7.1	exon	79694119	79694233	79694119	ID=MS.gene022008.t1.exon1;Parent=MS.gene022008.t1
chr7.1	CDS	79694119	79694233	79694119	ID=cds.MS.gene022008.t1;Parent=MS.gene022008.t1
chr7.1	exon	79693854	79693950	79693854	ID=MS.gene022008.t1.exon2;Parent=MS.gene022008.t1
chr7.1	CDS	79693854	79693950	79693854	ID=cds.MS.gene022008.t1;Parent=MS.gene022008.t1
chr7.1	exon	79693244	79693313	79693244	ID=MS.gene022008.t1.exon3;Parent=MS.gene022008.t1
chr7.1	CDS	79693244	79693313	79693244	ID=cds.MS.gene022008.t1;Parent=MS.gene022008.t1
chr7.1	exon	79693035	79693130	79693035	ID=MS.gene022008.t1.exon4;Parent=MS.gene022008.t1
chr7.1	CDS	79693035	79693130	79693035	ID=cds.MS.gene022008.t1;Parent=MS.gene022008.t1
chr7.1	exon	79691556	79691986	79691556	ID=MS.gene022008.t1.exon5;Parent=MS.gene022008.t1
chr7.1	CDS	79691556	79691986	79691556	ID=cds.MS.gene022008.t1;Parent=MS.gene022008.t1
chr7.1	exon	79689808	79689937	79689808	ID=MS.gene022008.t1.exon6;Parent=MS.gene022008.t1
chr7.1	CDS	79689808	79689937	79689808	ID=cds.MS.gene022008.t1;Parent=MS.gene022008.t1
chr7.1	exon	79688589	79688699	79688589	ID=MS.gene022008.t1.exon7;Parent=MS.gene022008.t1
chr7.1	CDS	79688589	79688699	79688589	ID=cds.MS.gene022008.t1;Parent=MS.gene022008.t1

Gene Sequence

>MS.gene022008

ATGGCTAGGTCTGCTAAAGGCCATCAAGATGAAGAATTGGTTGATGATGATGACGATCAAGACATCTTCACACCAAACACATCTTCCTCTCTCAACAACAACAATAATAACAATGGTACTCTCTCTCTCTCTCTCTCTTCTTTTTCTCTCTCTACAATACCCAACAATGATTCACAATTCCTTGATTAATGGGTGTTTCAAATTTCTTCTCTTTTTCCATTTTAATTGTGTTCTGCAATTCAATTTTATGTAAAAAATGCAATTTTGTGTTGTGACTTGGCAGTGAAGGTGGATGAACCCATCAGAGGGAAAAGGGCTAACCCTCATCGTTCTAAGCATTCAGAAACTGAGCAGCGTAGAAGAAGTAAAATTAATGAGAGGTAAATTTTCATGTTAAAATGTTATAAGAAATAAGATTTTTTTTATTAATTGTTGTATTATGTTTATATTTTGAGTCAAATTATGTTTTTCTTATTTGTTAATATTAATATTTAGTTATGATCTTTGTAGCACCGACACTTTGGCATGTCCGGTGTCTGACATGTGTCTGTGTCTGACGTGTCGACACATGTAATTACATTCAATTATATAATCAAAAGCTCCAATTTCTTATTTGTTAATATTAATATTTATGTTCGGATAGTTGAACAAAAAGTGTTAATATCAATTATATAATCAAAAGCTCCAATTTCTAGCTTCAAGTAGAATCAATTTTTGAGGCAAAATTAATTCTACTCGAGAGCAACCAAACATGTCAGAATCAATTATAAACTTCTAGAATCAATTTTGGCCCCTCTTTACGTGAAACCAAATATACACTTAAATTACTATCAACGTCGACGTGTTAGTGTTGTGTTCGGTGTTTGTGCTTCATAGGTGATGATTGGATGTTTGAATAAATATATATATTTTTGTGACAGATTTCAGGCTCTGAGAGATCTCATTCCTGAAAATGATTCAAAAAGAGATAAAGCTTCCTTTTTATTGGAGGTACTTGATTCCATCATTTGCTTCATGTATTCATCTTAATGATTATTTAAATTCTTGTAAATTAAATTGGGAATTTTGATCTTTGTTGTCCTTTGTTTTTGTCTTATGTGCAGGTTATTGAGTATATTCATTTCTTACAGGAAAAGTTACAAATTTATGAACATCCTTATGAAGGATGGAATCAGGAGCCAACTAAATTAATTCCATGGGTAAAGTTATTTGGAATATTGTTTGTGTTCATTTTTTACTTTGATTGCCAATGCATGACCATAGAAGTATGCATTTGTGGGTGAAGTACATTTAAATGCAAATGTTGATGAATAAAGCCATGAATGATATTATGTGTGTGTGCATAGCAATTTATGAATGTATTAAAATATCAACCGTTGATTGATTAGTATATGGGTTGAGATTAGTTATTTTACCCTGTAAAGCGAATTACTCGTTTAAGTTATCCATACACATATGTAAGATTATATGGCCTTTTACGTAAGTGAAGAACTTATTTTAGTAGAGAAGCTCCTCTAAGCTAGAATCCAGCTCAACTTGAGCCTTGATCCTAAAATTCAGGGATCTCGACATTGTTTCCCCTGGTTATATATTTGTACCGTTCTATGAATATATGGGAAACTGTTCGGATTCAAGTGATGCAACCTCATCTAAAACAATGTTGTTAAATAACGGCTATAGTGGTGATATAGCGTAGCAGAATTTTAACAAACTACTGTTATTTTGTGATACAAGCTTTAATATAGTGTTGCCAGTTAGCAGTTACAATAGTGCTATAGCATTGTAGCGTATTGGTATTTGAACAGATTGCTATTTTTTGCGATTTGCCATCGACAAACCTGATCTAAAATTTGATCTTGTCATGACACTCTAACTTGAAATACTAAGTTGCATAACATAAACTTGTGATTCTCTAATTGTATGAGAATTTATGTTTACATACTCGTCTTATCCTATTCCTGATTTGAATGCAAAAGAAACAACGCCAACCTCTAACTCTTATTCCTACCAAGCAGGGCTGCATATATTGTCATTGTCATGCCAATATACTTGATTGTGTATGTCATATTTCATGATGTCAAGTGCATAAAATTTATCATTCAAGAATTTAATTCTGTGGTGCTTAAGATTTTACCATCTTATGGCATTTGGCAAGTTCTCACAATGATTAGTTGCAATGTAAAGCCTTGGAATAATAGCACTGGCTCTTCATCTAAAATTTTATTGTGTTCAACTTTTTTTTTTCAGAGAAATCATCACGGACCTTCCGAAAATACTACAGATCATTCTCGAGCTATTCAAAATGGGTCTGTTGATGGAAAAAATAACGTCTCTCCATCATTGCCTAAAAATGTACAGAACCCAATAATGTCTGACCCCTCCACAACTATTCAGAAAGGTTGCATCCCTGGTTCATCCACAGAAGTAGTTCCCCTGACCATGCAAATGCGATTGGACATGTTTGATCCGGTTGTTAGCGGTGGTATGGTGACTCAACAGATGCTGGAGTTGCCTGTATCTAATCCTGACATGGCTTCAAATCTCCAGCCTCAAGTATGGCTTAGCAAACCAAACAAGGACAATCATATTGTTTCAGATAATACATTGAGAGAAAAAGAGGATTTGAAAATTGATAGTGGATCAGAATCAGATAGCATCTCAAGTGCCTACTCTCAAAGGTCAGTTTTTTTGATAAATTTAGAGCAGTATTTCTTGCCTGATTTCATGTTAACTATGTGCTTGAAACTACTTTATTGAGAGAGTGTGAACTCATTTTGTGTGTGTTACAAAATGAAATGATAATGTTCTTGTATTCATTTTTAGATTATCATAATTCTACTTTTAAGTTATGTTTGCGAGTTTTTAAGTTATTTGATCATAATGTTGGATTGGTTAACAGCCGCAGCAGTAGCCAGTAGGAGTGTCTCTTCATAGCTGTATACCGCAGTGTTGTCAAATAGAGGCTATAGCATTGTAACATTGTGGAATTTGAACAAATCTGTTTTCTGCGATCCGCGATGGACAGCATTGGTATATTGTATGTCTATGTTGTCAATTGCAGCACTATAGCGCGCTATCATGGACTCGAGTAGCAGCAATGTGGTCCGTTGTGTCGGTCGTGGCTGCAAATCATGCCTTTATCACATCATTATTGCGTCCCCGTCGCTCCTGCGCGTCTGCAATTAGGATTTAATGGGTGATATCCCTCGAATACCCAATAGTTTTAACTGTTTTATTTTTTAAGGGTATATAGGTCATTTCATTATATTTTATTATTCTTCACGTCTTCTATTTTTGTGTTTGCTTTCTGTGACTCTTTCTCCCCCATGCTTCGTGCAACTCTTCTTCTTCTGTGAAGCTCCATACCCATTCTCATTCTTCTGCATGCAAACTGCGAAGGGAAGCCATTCTTCTTCCTGCGAACGGAGAAAGCCTATGTTTCTCCTGTTTCTCCACTATTCCTTCTCTGTTTTTTGGCTTCCTTTGCTCTGATCTTTGAGTTTTCTGCGAGAACAATGGCATCCTCCTCGTCTGAAACACCAACCTCCAAGAATAAAGGTTAATTTAAGCCGACTGGTGACAACCTTGAAGTGGCTTGGGAATGGAATTCTTTGAAGGACATTAACAATAAAAAAATTGTTACCTCTTTAATTATTAACTATGACTATGATACTCCTTTAATTTTCTAGTATCTATATGTACCCTGTGTTTGTACACTGTTGTTTAGTCTTCGCAATAGCGGCTATCCGCTATATCAGTTTCGGGGTTTGTCACTTTACACCACTGTTTGAGATTAACAACATAGCTGTATGTATTATTAGTGTTAGAAATTTATTACTTAAAGCTGACAGAAGGTTTCTTCTATCGAAAATCTGCTGAAATTTTCCATTCCACATTCATATGATTTGTCAATCACCATTTTACTCGCTTGAGTTTTGTCAACTACTCTTCATAATTCTTATGACATATCACTGGTCCAAAAAAAATTATATGACCCATCCGACAAAATTATTAGAGCGCCACTTGGTTTACAATCGTGCACAAGATTCGGTTCTTGAAATAAAGAAAAAAATATTGACAAGAAAATGTTCAAGGGTTCGTTCCAGAATGTCTTATTGCAGTTGACAATTTGACATTGTTTTCTTTTAACATCTTCATGTATCATATAATTTTCAAAATAAGTGGTGCAACAATACATTTTCCAGGATATTAATTCTTCCACACATGAATCAATATGAGTACATTTTATTATATTCATGTCAATATATGATGTTGACTGGTTTCATGTTTAAACAGAATATTAGGTACTCTCACCCAAGCGCTACAATCTTCAGGTGTAGATTTGTCCCAGACCAATGTCTCGGTGGAAATTGATGTTGGTAGACGAACAAATACTGGATTTACCCCCTGTCAATATAGCTCAAAGGTTTGTTTATTTGTCATTTTTCTTCATTCTATGGCCCTGCAAAGTTTATTCATTCTTTTATGTTTATTTGAGAGGACTTTTTATTGCACTGAAGAGATTGAATTAGATGATCTAGTGTTACCAGAATGCATTAAAAAGGATGTAGGAAGAAGAAATTGCCAATGTATAAGCCTTATATTTGGACAGAGTCAGTTTAGGACTAGTAGGTGATGGTGGCGTTTGAAAAACGTTGTTGAGTTTATTTGAGTTTGCCACATGATATAATCATATAAGTACTTATGTAAGTTTTTGGATGAACTTATAAACATAATTTATGATACTTCATTAGATGTTTTCACTTTTCAGTATATTTTTGTAACTTATTCAAGATAGCATATGGAAATAGTGTATGCAGAGATTACAAGCTTAATTACCTCGTTGTTTTCCATCTGCCTCAAATTTTATTTTCAATGAAAACAAATGTCAGAGAAAGCAAATTACTTTACAACATGATATCCAAATACAAATAGCTTATTGAATTTAAGTGATTATCACATAAACTCTCATATAATAAACTAATGTCTGAGAATGCAAATTACTTTTCGATTTATTTATCCAAAAACAGATAGCTTATTGTATTTAAGTGATTATCACACAAACTCATAGCTCATAATAAACACTTAATTATGCTACTTAACCAAACACCCCTAAATATGTCACCATTATCTGTTCTACTCAATGTTTTAAAAACTGAGCTGAACCGGTCGGTTCAACCAATTTAACTGGAAACGGGCCATTTCACAGTTGCTTTGATCAGTTATATTGTTGTTGGATTGAACCGGGGTTAAAGCGGTTGAAACCACAGTTCAACTGCGGCTGGTTCAATCGGTTTTTATTCTTAGCAATTTTTATTAATTATTATACTTTTATAATACTTTTTATTTATTTATTTGTCATCTAGTTCAACCGTGGTTAAACCAATTGAACCGGTTGAACTACGACTCGAAAGTCTCACCGGTTCGATCTTTAGTCCGTTTCTAAGGATACAGACTTGGCATGGCCTTGTATTGTTTCTTTTCTCCTTAAAAATCATCTTATACCAATTTTTTTTTTTTTTTTTTTTTTGCAGAGTAATGAAAATCAATTTGTCAGCAATCAAGCAATGGCATGTTCAGGAATGAATTACTTCAGTGAGGATTCTGAACAAAGTCCAAAGAGGTTCAGAAGAGAAGCAAGCTAG

Protein sequence

>MS.gene022008.t1

MARSAKGHQDEELVDDDDDQDIFTPNTSSSLNNNNNNNVKVDEPIRGKRANPHRSKHSETEQRRRSKINERFQALRDLIPENDSKRDKASFLLEVIEYIHFLQEKLQIYEHPYEGWNQEPTKLIPWRNHHGPSENTTDHSRAIQNGSVDGKNNVSPSLPKNVQNPIMSDPSTTIQKGCIPGSSTEVVPLTMQMRLDMFDPVVSGGMVTQQMLELPVSNPDMASNLQPQVWLSKPNKDNHIVSDNTLREKEDLKIDSGSESDSISSAYSQRILGTLTQALQSSGVDLSQTNVSVEIDVGRRTNTGFTPCQYSSKSNENQFVSNQAMACSGMNYFSEDSEQSPKRFRREAS