AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene022306

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022306.t1 MTR_3g077650 98.806 335 4 0 1 335 113 447 0.0 697
MS.gene022306.t1 MTR_4g105660 58.438 320 119 6 1 314 111 422 2.32e-124 363
MS.gene022306.t1 MTR_5g049190 57.986 288 70 8 36 318 1 242 3.30e-108 316
MS.gene022306.t1 MTR_4g088015 71.756 131 37 0 63 193 215 345 4.31e-60 199
MS.gene022306.t1 MTR_7g037260 70.866 127 37 0 63 189 139 265 1.35e-59 195
MS.gene022306.t1 MTR_3g463400 53.723 188 76 3 15 192 75 261 1.02e-58 196
MS.gene022306.t1 MTR_7g451170 73.228 127 34 0 63 189 185 311 1.56e-58 194
MS.gene022306.t1 MTR_5g070020 61.379 145 48 2 54 191 108 251 1.63e-56 187
MS.gene022306.t1 MTR_7g037130 66.142 127 43 0 63 189 139 265 7.19e-54 181
MS.gene022306.t1 MTR_7g035350 53.205 156 72 1 62 216 218 373 1.56e-48 169
MS.gene022306.t1 MTR_7g450950 58.696 138 55 2 59 194 147 284 1.13e-47 164
MS.gene022306.t1 MTR_1g057980 44.131 213 108 4 5 216 17 219 2.14e-47 162
MS.gene022306.t1 MTR_7g061330 59.649 114 46 0 67 180 111 224 5.57e-41 150
MS.gene022306.t1 MTR_7g461410 59.649 114 46 0 67 180 111 224 5.57e-41 150
MS.gene022306.t1 MTR_7g061330 59.649 114 46 0 67 180 75 188 8.71e-41 149
MS.gene022306.t1 MTR_1g026870 58.252 103 43 0 67 169 83 185 3.66e-39 147
MS.gene022306.t1 MTR_3g110028 59.223 103 42 0 67 169 83 185 7.48e-39 147
MS.gene022306.t1 MTR_5g010650 57.143 98 42 0 66 163 107 204 2.08e-35 134
MS.gene022306.t1 MTR_4g094982 53.704 108 50 0 68 175 4 111 1.03e-34 128
MS.gene022306.t1 MTR_3g101290 39.869 153 90 1 62 214 30 180 1.17e-33 124
MS.gene022306.t1 MTR_5g016510 52.885 104 49 0 68 171 4 107 1.32e-33 126
MS.gene022306.t1 MTR_4g019370 53.922 102 47 0 68 169 37 138 3.24e-33 126
MS.gene022306.t1 MTR_5g082910 53.061 98 46 0 68 165 18 115 1.30e-30 117
MS.gene022306.t1 MTR_6g015455 49.038 104 53 0 68 171 4 107 3.79e-29 118
MS.gene022306.t1 MTR_3g052450 46.610 118 58 3 64 179 37 151 1.99e-28 115
MS.gene022306.t1 MTR_6g027340 47.525 101 53 0 69 169 16 116 1.07e-27 107
MS.gene022306.t1 MTR_4g100720 47.321 112 56 2 54 164 2 111 1.25e-27 106
MS.gene022306.t1 MTR_3g052430 46.552 116 57 3 66 179 40 152 1.48e-27 113
MS.gene022306.t1 MTR_5g079670 47.059 119 58 3 56 172 2 117 1.50e-27 107
MS.gene022306.t1 MTR_6g074860 44.800 125 67 1 69 193 4 126 3.52e-27 107
MS.gene022306.t1 MTR_2g089450 35.023 217 113 8 69 266 14 221 5.38e-27 107
MS.gene022306.t1 MTR_5g041570 40.136 147 84 2 52 198 117 259 9.80e-27 109
MS.gene022306.t1 MTR_4g082040 43.548 124 68 1 69 192 105 226 1.10e-26 109
MS.gene022306.t1 MTR_2g011660 48.039 102 52 1 69 169 15 116 1.41e-26 108
MS.gene022306.t1 MTR_6g027360 47.525 101 53 0 69 169 78 178 2.39e-26 106
MS.gene022306.t1 MTR_5g062790 39.597 149 78 4 69 207 11 157 2.54e-26 106
MS.gene022306.t1 MTR_2g089620 48.039 102 52 1 69 169 14 115 2.76e-26 107
MS.gene022306.t1 MTR_3g461490 44.545 110 60 1 63 171 8 117 2.80e-26 107
MS.gene022306.t1 MTR_8g042410 37.415 147 82 3 41 186 18 155 4.33e-26 108
MS.gene022306.t1 MTR_5g007370 47.573 103 51 2 69 169 14 115 4.41e-26 105
MS.gene022306.t1 MTR_4g073420 49.533 107 51 2 69 173 14 119 5.27e-26 105
MS.gene022306.t1 MTR_8g027345 47.059 102 53 1 64 164 9 110 5.33e-26 105
MS.gene022306.t1 MTR_3g011610 43.443 122 64 3 61 180 31 149 7.58e-26 108
MS.gene022306.t1 MTR_5g029840 43.636 110 61 1 64 172 9 118 8.78e-26 105
MS.gene022306.t1 MTR_2g089420 34.694 196 109 6 69 259 13 194 1.03e-25 107
MS.gene022306.t1 MTR_1g112760 43.925 107 57 2 69 173 15 120 1.06e-25 103
MS.gene022306.t1 MTR_8g020490 47.170 106 55 1 69 173 10 115 1.27e-25 103
MS.gene022306.t1 MTR_3g077110 43.925 107 57 2 69 173 14 119 1.61e-25 105
MS.gene022306.t1 MTR_7g086960 43.651 126 71 0 69 194 89 214 1.71e-25 105
MS.gene022306.t1 MTR_0008s0390 41.026 117 65 3 55 169 2 116 1.96e-25 103
MS.gene022306.t1 MTR_4g091490 47.059 102 53 1 69 169 15 116 2.00e-25 105
MS.gene022306.t1 MTR_1g043050 33.880 183 108 3 69 248 14 186 2.30e-25 102
MS.gene022306.t1 MTR_3g097450 48.598 107 51 3 69 172 14 119 2.49e-25 103
MS.gene022306.t1 MTR_4g125520 29.876 241 138 7 56 280 3 228 2.63e-25 103
MS.gene022306.t1 MTR_4g485530 44.167 120 63 3 56 173 2 119 2.84e-25 100
MS.gene022306.t1 MTR_5g078140 44.144 111 59 2 64 172 9 118 3.10e-25 103
MS.gene022306.t1 MTR_6g009430 42.727 110 62 1 64 172 9 118 3.16e-25 104
MS.gene022306.t1 MTR_4g478180 47.573 103 51 2 69 169 15 116 3.51e-25 104
MS.gene022306.t1 MTR_1g043080 45.098 102 55 1 69 169 14 115 4.11e-25 102
MS.gene022306.t1 MTR_3g089045 47.368 114 57 1 69 179 16 129 4.19e-25 102
MS.gene022306.t1 MTR_4g121460 44.444 108 59 1 63 169 8 115 4.33e-25 103
MS.gene022306.t1 MTR_8g095390 43.802 121 62 4 55 172 2 119 4.50e-25 103
MS.gene022306.t1 MTR_7g117730 46.078 102 54 1 64 164 9 110 4.60e-25 102
MS.gene022306.t1 MTR_4g105130 39.683 126 74 2 69 193 14 138 5.72e-25 103
MS.gene022306.t1 MTR_4g102380 43.243 111 60 2 64 172 9 118 5.89e-25 102
MS.gene022306.t1 MTR_1g110460 43.137 102 57 1 69 169 28 129 6.44e-25 102
MS.gene022306.t1 MTR_1g045610 30.213 235 123 7 69 275 23 244 7.44e-25 101
MS.gene022306.t1 MTR_0008s0470 41.748 103 57 2 69 169 15 116 9.46e-25 102
MS.gene022306.t1 MTR_3g065440 43.243 111 60 2 64 172 9 118 9.74e-25 102
MS.gene022306.t1 MTR_1g085040 44.660 103 54 2 69 169 14 115 9.84e-25 103
MS.gene022306.t1 MTR_5g088080 44.737 114 59 3 69 180 14 125 1.11e-24 101
MS.gene022306.t1 MTR_5g088150 44.737 114 59 3 69 180 14 125 1.11e-24 101
MS.gene022306.t1 MTR_5g488210 44.737 114 59 3 69 180 14 125 1.11e-24 101
MS.gene022306.t1 MTR_5g088640 44.737 114 59 3 69 180 14 125 1.23e-24 101
MS.gene022306.t1 MTR_3g028740 43.443 122 61 2 56 169 4 125 1.51e-24 102
MS.gene022306.t1 MTR_5g088610 43.860 114 60 3 69 180 11 122 1.70e-24 102
MS.gene022306.t1 MTR_2g097910 45.098 102 55 1 69 169 22 123 1.71e-24 102
MS.gene022306.t1 MTR_0251s0050 39.655 116 68 2 55 169 2 116 1.86e-24 100
MS.gene022306.t1 MTR_7g096930 44.660 103 56 1 63 164 8 110 1.88e-24 100
MS.gene022306.t1 MTR_2g064160 43.689 103 55 2 69 169 13 114 2.04e-24 101
MS.gene022306.t1 MTR_5g488170 44.737 114 59 3 69 180 14 125 2.41e-24 99.8
MS.gene022306.t1 MTR_4g065017 42.857 119 63 2 56 169 2 120 3.77e-24 101
MS.gene022306.t1 MTR_7g115650 40.541 111 65 1 63 172 8 118 3.80e-24 98.2
MS.gene022306.t1 MTR_7g111290 48.454 97 47 2 69 163 14 109 4.34e-24 101
MS.gene022306.t1 MTR_6g027370 47.059 102 54 0 68 169 98 199 4.98e-24 101
MS.gene022306.t1 MTR_5g042030 42.727 110 62 1 61 169 1 110 6.06e-24 99.8
MS.gene022306.t1 MTR_1g073170 47.917 96 47 2 69 162 22 116 6.87e-24 99.0
MS.gene022306.t1 MTR_7g011170 42.342 111 63 1 63 172 8 118 7.82e-24 99.8
MS.gene022306.t1 MTR_3g074520 46.602 103 52 2 69 169 14 115 7.95e-24 100
MS.gene022306.t1 MTR_1g076150 39.831 118 68 2 63 178 8 124 8.00e-24 98.6
MS.gene022306.t1 MTR_7g110830 42.593 108 60 2 69 175 14 120 1.05e-23 100
MS.gene022306.t1 MTR_1g085640 41.667 108 61 2 69 175 14 120 1.05e-23 100
MS.gene022306.t1 MTR_1g021230 43.363 113 58 2 69 180 59 166 1.18e-23 101
MS.gene022306.t1 MTR_8g017440 39.474 114 66 2 69 180 14 126 1.27e-23 99.8
MS.gene022306.t1 MTR_2g034790 42.593 108 61 1 63 169 8 115 1.28e-23 99.8
MS.gene022306.t1 MTR_2g088170 46.774 124 61 3 59 180 21 141 1.42e-23 101
MS.gene022306.t1 MTR_5g010020 45.361 97 52 1 69 164 14 110 1.67e-23 99.4
MS.gene022306.t1 MTR_8g031360 47.170 106 48 4 64 164 10 112 1.87e-23 98.6
MS.gene022306.t1 MTR_8g098860 30.851 188 106 3 69 232 14 201 2.38e-23 98.6
MS.gene022306.t1 MTR_1g100653 41.593 113 64 2 69 180 14 125 2.52e-23 98.2
MS.gene022306.t1 MTR_8g006470 46.078 102 53 2 69 168 12 113 2.98e-23 97.8
MS.gene022306.t1 MTR_7g035075 45.263 95 51 1 69 162 16 110 3.53e-23 95.9
MS.gene022306.t1 MTR_8g017540 42.718 103 56 2 69 169 60 161 6.18e-23 98.6
MS.gene022306.t1 MTR_7g076740 35.928 167 77 6 69 230 14 155 1.05e-22 96.7
MS.gene022306.t1 MTR_4g063100 42.056 107 61 1 69 174 9 115 1.22e-22 95.5
MS.gene022306.t1 MTR_5g079290 33.929 168 104 4 69 234 19 181 1.25e-22 95.5
MS.gene022306.t1 MTR_2g099740 42.718 103 56 2 69 169 14 115 1.40e-22 97.8
MS.gene022306.t1 MTR_4g082230 37.324 142 78 4 63 194 8 148 1.91e-22 97.4
MS.gene022306.t1 MTR_0063s0090 42.373 118 60 3 69 184 14 125 2.04e-22 94.0
MS.gene022306.t1 MTR_7g017260 45.631 103 53 1 65 164 23 125 2.45e-22 95.1
MS.gene022306.t1 MTR_4g082290 36.879 141 80 3 63 194 8 148 2.81e-22 97.1
MS.gene022306.t1 MTR_8g017340 44.144 111 56 4 62 169 9 116 3.61e-22 97.4
MS.gene022306.t1 MTR_8g017500 41.748 103 57 2 69 169 14 115 3.79e-22 95.9
MS.gene022306.t1 MTR_4g029540 44.118 102 55 2 69 168 12 113 3.85e-22 95.1
MS.gene022306.t1 MTR_1g062940 39.655 116 67 2 66 179 5 119 4.17e-22 93.2
MS.gene022306.t1 MTR_5g079220 42.056 107 59 2 69 173 23 128 5.20e-22 94.4
MS.gene022306.t1 MTR_1g008970 59.459 74 29 1 92 164 113 186 5.57e-22 93.6
MS.gene022306.t1 MTR_6g012690 41.818 110 63 1 64 172 9 118 5.61e-22 95.5
MS.gene022306.t1 MTR_6g006030 40.741 108 63 1 56 162 3 110 6.99e-22 92.4
MS.gene022306.t1 MTR_8g017390 41.441 111 59 4 62 169 9 116 7.56e-22 96.3
MS.gene022306.t1 MTR_7g087130 41.441 111 64 1 63 172 8 118 7.74e-22 94.7
MS.gene022306.t1 MTR_5g078910 42.718 103 56 2 69 169 9 110 8.01e-22 94.0
MS.gene022306.t1 MTR_0247s0040 44.000 100 55 1 69 167 9 108 8.21e-22 91.3
MS.gene022306.t1 MTR_4g097570 44.660 103 54 2 64 163 9 111 9.27e-22 94.0
MS.gene022306.t1 MTR_6g055910 39.831 118 69 2 58 174 6 122 1.08e-21 93.6
MS.gene022306.t1 MTR_3g083540 39.216 102 61 1 64 164 38 139 1.31e-21 93.6
MS.gene022306.t1 MTR_8g017350 43.243 111 57 4 62 169 9 116 1.40e-21 95.9
MS.gene022306.t1 MTR_7g010210 41.121 107 62 1 69 174 14 120 1.44e-21 94.0
MS.gene022306.t1 MTR_7g010210 41.905 105 60 1 69 172 14 118 1.52e-21 92.8
MS.gene022306.t1 MTR_3g103570 42.982 114 62 3 64 174 9 122 1.58e-21 94.0
MS.gene022306.t1 MTR_5g078950 40.000 100 59 1 69 167 9 108 1.60e-21 92.4
MS.gene022306.t1 MTR_3g039990 41.441 111 64 1 63 172 9 119 1.68e-21 93.6
MS.gene022306.t1 MTR_1g017140 37.594 133 74 3 64 187 9 141 1.92e-21 93.6
MS.gene022306.t1 MTR_0197s0010 47.368 95 47 2 72 164 6 99 1.93e-21 91.7
MS.gene022306.t1 MTR_6g090405 40.171 117 66 3 56 170 3 117 2.33e-21 92.0
MS.gene022306.t1 MTR_0140s0030 39.640 111 66 1 63 172 9 119 2.74e-21 93.2
MS.gene022306.t1 MTR_0489s0020 39.640 111 66 1 63 172 9 119 2.74e-21 93.2
MS.gene022306.t1 MTR_0001s0360 39.623 106 63 1 69 173 9 114 3.39e-21 91.3
MS.gene022306.t1 MTR_5g078860 42.056 107 59 2 69 173 9 114 3.39e-21 92.4
MS.gene022306.t1 MTR_5g079120 38.346 133 70 3 60 184 54 182 3.50e-21 92.4
MS.gene022306.t1 MTR_5g038910 42.982 114 62 2 59 170 17 129 4.76e-21 94.0
MS.gene022306.t1 MTR_6g012180 44.330 97 53 1 69 164 14 110 5.91e-21 92.0
MS.gene022306.t1 MTR_1g017000 38.938 113 61 3 59 169 10 116 6.87e-21 90.5
MS.gene022306.t1 MTR_2g096380 41.667 108 60 2 69 174 8 114 7.22e-21 90.1
MS.gene022306.t1 MTR_4g097570 44.118 102 55 2 64 163 9 110 8.27e-21 91.3
MS.gene022306.t1 MTR_5g038910 43.564 101 55 1 72 170 29 129 9.13e-21 92.4
MS.gene022306.t1 MTR_7g109320 39.216 153 90 2 63 212 8 160 1.12e-20 91.7
MS.gene022306.t1 MTR_5g078800 41.121 107 60 2 69 173 9 114 1.28e-20 90.1
MS.gene022306.t1 MTR_5g014990 41.667 108 61 2 64 169 9 116 1.80e-20 90.5
MS.gene022306.t1 MTR_1g100667 40.000 105 62 1 69 172 15 119 2.44e-20 89.4
MS.gene022306.t1 MTR_2g095520 43.689 103 56 2 64 164 9 111 2.83e-20 90.1
MS.gene022306.t1 MTR_0193s0090 41.584 101 58 1 69 168 9 109 4.39e-20 87.4
MS.gene022306.t1 MTR_1g086530 39.815 108 62 2 69 174 35 141 4.43e-20 89.0
MS.gene022306.t1 MTR_1g086510 40.187 107 63 1 69 174 23 129 4.46e-20 88.6
MS.gene022306.t1 MTR_8g468380 38.776 98 60 0 72 169 25 122 5.36e-20 90.5
MS.gene022306.t1 MTR_5g078930 43.878 98 52 2 69 164 11 107 5.46e-20 87.4
MS.gene022306.t1 MTR_8g060940 41.237 97 56 1 69 164 9 105 7.30e-20 87.4
MS.gene022306.t1 MTR_2g033170 37.838 111 67 2 64 173 21 130 1.43e-19 88.2
MS.gene022306.t1 MTR_4g128670 43.689 103 56 2 64 164 9 111 1.51e-19 88.6
MS.gene022306.t1 MTR_1g083630 40.566 106 62 1 65 169 10 115 1.70e-19 89.7
MS.gene022306.t1 MTR_0008s0280 39.175 97 58 1 69 164 14 110 2.01e-19 85.9
MS.gene022306.t1 MTR_7g035300 36.364 165 76 5 28 175 18 170 2.37e-19 85.9
MS.gene022306.t1 MTR_2g067420 42.268 97 55 1 69 164 16 112 8.60e-19 86.3
MS.gene022306.t1 MTR_4g128190 43.564 101 44 3 69 168 13 101 9.62e-19 84.3
MS.gene022306.t1 MTR_4g057635 39.815 108 63 2 64 169 9 116 1.49e-18 85.5
MS.gene022306.t1 MTR_7g102110 38.889 108 64 2 64 169 9 116 2.88e-18 83.6
MS.gene022306.t1 MTR_4g123040 41.000 100 56 2 65 162 22 120 3.25e-18 84.3
MS.gene022306.t1 MTR_7g111290 54.839 62 28 0 102 163 6 67 3.64e-18 84.3
MS.gene022306.t1 MTR_7g061550 40.741 108 61 2 71 175 9 116 5.01e-17 81.3
MS.gene022306.t1 MTR_3g045430 35.294 102 65 1 72 172 18 119 5.10e-17 80.5
MS.gene022306.t1 MTR_6g055910 43.836 73 41 0 102 174 21 93 7.29e-17 79.3
MS.gene022306.t1 MTR_4g063100 41.463 82 47 1 93 174 6 86 2.63e-16 77.4
MS.gene022306.t1 MTR_1g085880 38.739 111 64 3 72 180 17 125 1.77e-15 74.3
MS.gene022306.t1 MTR_1g085770 38.739 111 64 3 72 180 17 125 4.44e-15 75.1
MS.gene022306.t1 MTR_2g096380 39.726 73 44 0 102 174 23 95 4.49e-14 70.9
MS.gene022306.t1 MTR_6g080360 34.711 121 78 1 69 189 530 649 4.44e-13 70.9
MS.gene022306.t1 MTR_6g080360 35.052 97 62 1 66 162 476 571 3.15e-11 65.1
MS.gene022306.t1 MTR_5g007300 42.667 75 42 1 69 142 66 140 5.75e-13 65.9
MS.gene022306.t1 MTR_6g080360 34.711 121 78 1 69 189 310 429 1.01e-12 69.3
MS.gene022306.t1 MTR_6g080360 35.052 97 62 1 66 162 256 351 6.51e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022306.t1 AT4G18770 53.265 291 115 5 3 281 145 426 4.87e-95 289
MS.gene022306.t1 AT3G27785 64.000 150 50 2 53 198 173 322 2.76e-60 199
MS.gene022306.t1 AT5G58850 64.286 140 37 2 66 192 102 241 5.36e-55 186
MS.gene022306.t1 AT5G11050 45.064 233 115 5 66 292 102 327 2.77e-53 181
MS.gene022306.t1 AT5G40360 58.696 138 55 1 62 197 151 288 2.04e-50 172
MS.gene022306.t1 AT3G09370 59.167 120 47 1 66 183 132 251 1.35e-41 151
MS.gene022306.t1 AT3G09370 59.167 120 47 1 66 183 127 246 1.61e-41 151
MS.gene022306.t1 AT3G09370 59.167 120 47 1 66 183 140 259 1.76e-41 151
MS.gene022306.t1 AT5G02320 61.165 103 40 0 67 169 125 227 1.09e-39 147
MS.gene022306.t1 AT5G02320 61.165 103 40 0 67 169 125 227 1.09e-39 147
MS.gene022306.t1 AT5G02320 61.165 103 40 0 67 169 65 167 1.23e-39 146
MS.gene022306.t1 AT2G25230 48.529 136 70 0 60 195 17 152 4.96e-39 138
MS.gene022306.t1 AT5G11510 53.279 122 51 1 67 188 79 194 2.38e-38 145
MS.gene022306.t1 AT5G11510 53.279 122 51 1 67 188 79 194 2.38e-38 145
MS.gene022306.t1 AT5G11510 53.279 122 51 1 67 188 79 194 2.38e-38 145
MS.gene022306.t1 AT5G11510 53.279 122 51 1 67 188 79 194 2.58e-38 145
MS.gene022306.t1 AT5G11510 53.279 122 51 1 67 188 79 194 2.98e-38 145
MS.gene022306.t1 AT4G32730 55.000 120 49 1 67 186 85 199 3.16e-38 145
MS.gene022306.t1 AT4G32730 55.000 120 49 1 67 186 85 199 3.16e-38 145
MS.gene022306.t1 AT4G32730 55.000 120 49 1 67 186 85 199 3.16e-38 145
MS.gene022306.t1 AT4G32730 55.000 120 49 1 67 186 85 199 3.16e-38 145
MS.gene022306.t1 AT4G32730 55.000 120 49 1 67 186 85 199 4.21e-38 144
MS.gene022306.t1 AT3G55730 45.833 144 76 1 68 209 55 198 1.63e-36 136
MS.gene022306.t1 AT5G40430 46.154 143 74 3 60 201 45 185 2.16e-35 129
MS.gene022306.t1 AT4G37260 51.351 111 54 0 61 171 5 115 1.17e-33 126
MS.gene022306.t1 AT4G00540 59.615 104 39 1 69 169 103 206 1.70e-33 128
MS.gene022306.t1 AT2G23290 51.351 111 54 0 61 171 5 115 2.35e-33 125
MS.gene022306.t1 AT4G00540 59.615 104 39 1 69 169 101 204 5.10e-33 127
MS.gene022306.t1 AT3G09230 53.398 103 48 0 68 170 54 156 1.20e-31 122
MS.gene022306.t1 AT3G50060 48.077 104 54 0 68 171 5 108 4.32e-30 116
MS.gene022306.t1 AT5G67300 50.000 102 51 0 68 169 5 106 7.44e-30 116
MS.gene022306.t1 AT3G29020 50.000 106 50 1 69 171 65 170 9.06e-29 111
MS.gene022306.t1 AT3G29020 50.000 106 50 1 69 171 67 172 3.19e-28 111
MS.gene022306.t1 AT3G11440 46.491 114 56 3 69 180 43 153 5.91e-28 113
MS.gene022306.t1 AT2G39880 49.020 102 52 0 68 169 49 150 7.83e-28 112
MS.gene022306.t1 AT5G26660 36.527 167 100 4 69 233 14 176 1.22e-27 111
MS.gene022306.t1 AT3G11440 43.077 130 65 4 69 196 43 165 1.32e-27 113
MS.gene022306.t1 AT3G11440 43.077 130 65 4 69 196 43 165 1.32e-27 113
MS.gene022306.t1 AT3G11440 43.077 130 65 4 69 196 43 165 1.32e-27 113
MS.gene022306.t1 AT5G14750 40.000 120 71 1 67 185 16 135 1.58e-27 107
MS.gene022306.t1 AT2G26960 35.484 186 95 4 64 248 17 178 2.41e-27 111
MS.gene022306.t1 AT3G28470 37.013 154 95 2 64 216 9 161 2.47e-27 109
MS.gene022306.t1 AT1G22640 48.673 113 55 2 63 173 8 119 2.65e-27 108
MS.gene022306.t1 AT1G69560 41.549 142 75 2 44 179 92 231 2.92e-27 110
MS.gene022306.t1 AT1G69560 41.549 142 75 2 44 179 76 215 3.45e-27 109
MS.gene022306.t1 AT1G74430 46.226 106 56 1 69 173 14 119 4.32e-27 107
MS.gene022306.t1 AT4G28110 49.020 102 51 1 69 169 14 115 4.57e-27 108
MS.gene022306.t1 AT2G32460 47.826 115 53 4 69 180 20 130 1.03e-26 110
MS.gene022306.t1 AT4G26930 44.248 113 60 2 69 180 21 131 1.03e-26 109
MS.gene022306.t1 AT2G32460 47.826 115 53 4 69 180 8 118 1.07e-26 110
MS.gene022306.t1 AT4G38620 50.467 107 50 2 69 173 14 119 1.09e-26 107
MS.gene022306.t1 AT5G06100 44.737 114 58 3 69 180 34 144 1.32e-26 109
MS.gene022306.t1 AT5G55020 44.248 113 60 2 69 180 28 138 1.40e-26 110
MS.gene022306.t1 AT1G26780 46.154 117 61 1 69 185 98 212 1.44e-26 106
MS.gene022306.t1 AT4G05100 46.018 113 60 1 61 172 7 119 1.52e-26 107
MS.gene022306.t1 AT1G26780 46.154 117 61 1 69 185 98 212 2.34e-26 107
MS.gene022306.t1 AT5G06100 44.737 114 58 3 69 180 34 144 2.72e-26 109
MS.gene022306.t1 AT5G06100 44.737 114 58 3 69 180 34 144 2.72e-26 109
MS.gene022306.t1 AT5G06100 44.737 114 58 3 69 180 34 144 2.72e-26 109
MS.gene022306.t1 AT5G06100 44.737 114 58 3 69 180 34 144 2.72e-26 109
MS.gene022306.t1 AT4G21440 49.020 102 51 1 69 169 14 115 3.72e-26 107
MS.gene022306.t1 AT2G26950 43.200 125 60 3 61 180 10 128 3.98e-26 107
MS.gene022306.t1 AT4G33450 42.748 131 73 1 63 193 13 141 4.07e-26 104
MS.gene022306.t1 AT5G40330 34.503 171 95 4 63 226 8 168 5.15e-26 103
MS.gene022306.t1 AT3G27920 45.455 99 53 1 67 164 14 112 5.59e-26 103
MS.gene022306.t1 AT5G12870 45.714 105 56 1 69 172 20 124 6.96e-26 104
MS.gene022306.t1 AT1G57560 44.860 107 56 2 69 173 14 119 7.58e-26 105
MS.gene022306.t1 AT5G56110 45.455 110 59 1 63 171 8 117 8.05e-26 105
MS.gene022306.t1 AT4G22680 45.045 111 58 2 64 172 9 118 8.28e-26 104
MS.gene022306.t1 AT1G57560 44.860 107 56 2 69 173 14 119 8.58e-26 104
MS.gene022306.t1 AT1G09540 44.860 107 56 2 69 173 14 119 1.13e-25 105
MS.gene022306.t1 AT5G07690 48.649 111 54 2 55 164 2 110 1.55e-25 105
MS.gene022306.t1 AT3G12720 45.192 104 54 2 69 170 24 126 2.84e-25 103
MS.gene022306.t1 AT5G54230 38.333 180 95 6 69 237 14 188 3.01e-25 103
MS.gene022306.t1 AT1G66230 43.243 111 60 2 64 172 9 118 3.47e-25 103
MS.gene022306.t1 AT4G09460 48.039 102 52 1 69 169 14 115 3.50e-25 102
MS.gene022306.t1 AT5G35550 45.217 115 58 3 69 181 16 127 3.66e-25 102
MS.gene022306.t1 AT5G17800 42.241 116 67 0 69 184 93 208 9.24e-25 102
MS.gene022306.t1 AT4G34990 47.222 108 55 2 69 175 14 120 1.09e-24 101
MS.gene022306.t1 AT5G61420 44.828 116 61 2 55 169 2 115 1.16e-24 103
MS.gene022306.t1 AT2G16720 47.107 121 58 4 55 172 2 119 1.46e-24 100
MS.gene022306.t1 AT5G60890 48.148 108 54 2 69 175 14 120 1.47e-24 101
MS.gene022306.t1 AT3G61250 37.736 159 74 4 64 220 9 144 1.69e-24 101
MS.gene022306.t1 AT1G17950 42.017 119 66 1 69 184 5 123 1.70e-24 100
MS.gene022306.t1 AT5G07700 47.059 102 53 1 69 169 14 115 1.80e-24 102
MS.gene022306.t1 AT5G07700 47.059 102 53 1 69 169 14 115 1.80e-24 102
MS.gene022306.t1 AT1G35515 41.964 112 64 1 63 173 8 119 1.81e-24 99.4
MS.gene022306.t1 AT3G27810 33.133 166 91 2 69 233 22 168 2.69e-24 99.4
MS.gene022306.t1 AT4G12350 43.243 111 60 2 64 172 9 118 3.45e-24 100
MS.gene022306.t1 AT5G16600 43.243 111 60 2 64 172 9 118 4.71e-24 100
MS.gene022306.t1 AT2G47190 46.078 102 54 1 69 169 22 123 4.80e-24 99.8
MS.gene022306.t1 AT3G13540 37.607 117 72 1 54 169 10 126 6.01e-24 99.0
MS.gene022306.t1 AT1G63910 39.062 128 72 2 69 195 14 136 6.75e-24 101
MS.gene022306.t1 AT3G24310 45.946 111 52 3 69 177 20 124 7.40e-24 99.0
MS.gene022306.t1 AT3G23250 41.667 108 62 1 63 169 8 115 7.62e-24 99.4
MS.gene022306.t1 AT1G18570 42.478 113 64 1 62 173 8 120 8.25e-24 100
MS.gene022306.t1 AT5G16770 46.078 102 54 1 69 169 14 115 8.59e-24 100
MS.gene022306.t1 AT5G16770 46.078 102 54 1 69 169 14 115 8.59e-24 100
MS.gene022306.t1 AT5G14340 32.710 214 113 8 55 263 14 201 9.16e-24 99.0
MS.gene022306.t1 AT5G16770 46.078 102 54 1 69 169 14 115 1.15e-23 100
MS.gene022306.t1 AT5G16770 46.078 102 54 1 69 169 14 115 1.15e-23 100
MS.gene022306.t1 AT4G13480 40.496 121 69 2 69 187 8 127 1.72e-23 97.8
MS.gene022306.t1 AT5G10280 45.631 103 53 2 69 169 14 115 1.87e-23 99.4
MS.gene022306.t1 AT1G06180 42.982 114 60 3 63 172 8 120 1.88e-23 97.4
MS.gene022306.t1 AT3G02940 45.098 102 55 1 69 169 14 115 2.56e-23 98.6
MS.gene022306.t1 AT3G08500 44.118 102 56 1 69 169 32 133 2.92e-23 99.0
MS.gene022306.t1 AT1G74080 40.602 133 77 2 69 200 14 145 3.23e-23 98.6
MS.gene022306.t1 AT3G02940 45.098 102 55 1 69 169 14 115 3.56e-23 98.2
MS.gene022306.t1 AT3G02940 45.098 102 55 1 69 169 14 115 3.56e-23 98.2
MS.gene022306.t1 AT4G01680 41.509 106 61 1 69 173 14 119 3.65e-23 96.7
MS.gene022306.t1 AT1G73410 46.729 107 54 1 69 172 6 112 4.17e-23 96.7
MS.gene022306.t1 AT3G13890 41.176 102 59 1 69 169 14 115 4.40e-23 98.6
MS.gene022306.t1 AT5G65230 45.631 103 53 2 69 169 14 115 4.54e-23 97.8
MS.gene022306.t1 AT5G62320 33.854 192 113 5 54 236 2 188 5.16e-23 96.3
MS.gene022306.t1 AT3G30210 44.860 107 54 2 69 174 29 131 5.54e-23 97.1
MS.gene022306.t1 AT4G01680 41.509 106 61 1 69 173 14 119 5.65e-23 98.2
MS.gene022306.t1 AT1G73410 46.729 107 54 1 69 172 6 112 5.98e-23 95.1
MS.gene022306.t1 AT1G68320 42.157 102 58 1 69 169 21 122 9.01e-23 96.7
MS.gene022306.t1 AT3G62610 41.667 108 62 1 63 169 8 115 9.32e-23 97.4
MS.gene022306.t1 AT3G01530 44.118 102 56 1 69 169 27 128 9.45e-23 94.7
MS.gene022306.t1 AT5G40350 41.818 110 62 2 69 177 19 127 9.70e-23 94.7
MS.gene022306.t1 AT1G25340 38.346 133 62 2 69 200 20 133 1.32e-22 95.9
MS.gene022306.t1 AT4G17785 43.689 103 55 2 69 169 15 116 1.40e-22 97.1
MS.gene022306.t1 AT5G62470 40.909 110 65 0 63 172 8 117 1.40e-22 97.1
MS.gene022306.t1 AT2G31180 39.640 111 66 1 63 172 8 118 1.69e-22 95.1
MS.gene022306.t1 AT3G60460 44.348 115 60 3 56 168 2 114 1.73e-22 95.9
MS.gene022306.t1 AT4G17785 43.689 103 55 2 69 169 15 116 1.74e-22 97.1
MS.gene022306.t1 AT3G13890 39.640 111 57 1 69 169 14 124 2.04e-22 97.1
MS.gene022306.t1 AT5G15310 41.818 110 63 1 64 172 9 118 2.19e-22 96.3
MS.gene022306.t1 AT5G15310 41.818 110 63 1 64 172 9 118 2.46e-22 94.4
MS.gene022306.t1 AT5G15310 41.818 110 63 1 64 172 9 118 2.47e-22 95.9
MS.gene022306.t1 AT5G59780 40.367 109 64 1 67 174 8 116 3.18e-22 94.0
MS.gene022306.t1 AT1G66370 40.870 115 59 2 69 178 10 120 4.34e-22 94.0
MS.gene022306.t1 AT5G26660 36.364 132 81 2 102 233 17 145 4.39e-22 95.1
MS.gene022306.t1 AT1G18710 42.593 108 60 2 69 175 14 120 4.75e-22 94.0
MS.gene022306.t1 AT1G25340 37.879 132 59 2 69 200 20 128 5.42e-22 94.4
MS.gene022306.t1 AT3G46130 42.593 108 59 2 69 174 11 117 6.28e-22 93.6
MS.gene022306.t1 AT1G48000 44.444 99 54 1 65 162 30 128 6.33e-22 93.2
MS.gene022306.t1 AT1G56160 39.496 119 67 3 55 171 4 119 6.39e-22 94.4
MS.gene022306.t1 AT5G52600 41.121 107 62 1 69 174 14 120 8.24e-22 92.0
MS.gene022306.t1 AT1G25340 37.879 132 59 2 69 200 20 128 8.74e-22 94.4
MS.gene022306.t1 AT3G01140 41.818 110 63 1 64 172 9 118 8.94e-22 94.7
MS.gene022306.t1 AT3G01140 41.818 110 63 1 64 172 52 161 9.32e-22 95.5
MS.gene022306.t1 AT3G53200 42.623 122 63 3 62 181 4 120 9.81e-22 92.8
MS.gene022306.t1 AT4G01680 38.983 118 59 2 69 173 14 131 1.31e-21 94.4
MS.gene022306.t1 AT1G08810 42.727 110 62 1 64 172 9 118 1.54e-21 93.2
MS.gene022306.t1 AT2G47460 39.815 108 64 1 63 169 8 115 1.81e-21 94.4
MS.gene022306.t1 AT1G34670 43.137 102 57 1 69 169 14 115 2.99e-21 93.6
MS.gene022306.t1 AT3G47600 40.909 110 64 1 64 172 9 118 3.06e-21 93.2
MS.gene022306.t1 AT5G39700 35.802 162 96 3 14 175 9 162 3.28e-21 90.1
MS.gene022306.t1 AT3G48920 43.564 101 56 1 69 168 20 120 3.53e-21 91.7
MS.gene022306.t1 AT1G16490 39.450 109 65 1 64 171 11 119 5.13e-21 91.3
MS.gene022306.t1 AT5G62470 40.541 111 65 1 63 172 8 118 5.42e-21 92.8
MS.gene022306.t1 AT1G79180 37.288 118 73 1 64 180 11 128 6.86e-21 91.7
MS.gene022306.t1 AT4G37780 37.838 111 67 2 69 177 14 124 8.31e-21 91.3
MS.gene022306.t1 AT1G66380 47.525 101 44 2 69 164 10 106 8.78e-21 87.4
MS.gene022306.t1 AT4G25560 39.815 108 64 1 69 175 12 119 9.80e-21 90.9
MS.gene022306.t1 AT5G49330 39.815 108 64 1 63 169 8 115 1.31e-20 91.7
MS.gene022306.t1 AT3G28910 41.905 105 60 1 69 172 14 118 1.50e-20 90.9
MS.gene022306.t1 AT1G74650 40.741 108 63 1 63 169 8 115 1.72e-20 90.9
MS.gene022306.t1 AT5G49620 39.130 115 68 2 60 173 19 132 3.52e-20 89.7
MS.gene022306.t1 AT5G65790 39.062 128 75 3 64 189 9 135 5.38e-20 90.1
MS.gene022306.t1 AT5G57620 40.708 113 65 2 64 174 9 121 8.23e-20 89.0
MS.gene022306.t1 AT5G35550 48.750 80 39 1 102 181 53 130 1.22e-19 87.4
MS.gene022306.t1 AT5G14750 39.326 89 52 1 99 185 13 101 1.68e-19 84.7
MS.gene022306.t1 AT1G56650 46.535 101 45 2 69 164 10 106 4.06e-19 85.5
MS.gene022306.t1 AT1G14350 40.860 93 55 0 72 164 28 120 4.20e-19 88.2
MS.gene022306.t1 AT1G14350 40.860 93 55 0 72 164 28 120 4.20e-19 88.2
MS.gene022306.t1 AT3G49690 41.667 108 61 2 64 169 9 116 5.42e-19 86.3
MS.gene022306.t1 AT3G12820 39.252 107 62 2 69 173 16 121 6.31e-19 85.1
MS.gene022306.t1 AT5G52260 42.453 106 58 2 69 172 14 118 9.03e-19 85.1
MS.gene022306.t1 AT2G02820 40.659 91 54 0 72 162 33 123 2.41e-18 84.7
MS.gene022306.t1 AT5G23000 40.678 118 64 3 55 169 2 116 2.50e-18 84.7
MS.gene022306.t1 AT2G02820 39.785 93 56 0 72 164 33 125 3.73e-18 85.5
MS.gene022306.t1 AT2G02820 39.785 93 56 0 72 164 33 125 4.84e-18 85.1
MS.gene022306.t1 AT1G66390 42.991 107 52 2 69 170 10 112 1.28e-17 81.6
MS.gene022306.t1 AT3G06490 37.273 110 66 2 55 162 7 115 1.33e-17 82.8
MS.gene022306.t1 AT1G79180 44.304 79 44 0 102 180 83 161 1.76e-17 82.4
MS.gene022306.t1 AT3G27810 32.576 132 70 1 102 233 7 119 4.12e-17 78.6
MS.gene022306.t1 AT5G49620 34.884 129 68 3 60 173 19 146 7.37e-17 80.5
MS.gene022306.t1 AT3G53200 47.500 80 38 1 102 181 12 87 9.14e-17 78.2
MS.gene022306.t1 AT2G36890 38.889 108 64 2 64 169 9 116 9.84e-17 79.7
MS.gene022306.t1 AT2G36890 38.889 108 64 2 64 169 50 157 1.31e-16 80.1
MS.gene022306.t1 AT3G12820 45.833 72 39 0 102 173 2 73 1.93e-16 77.0
MS.gene022306.t1 AT2G37630 42.056 107 59 2 71 174 6 112 2.08e-16 79.7
MS.gene022306.t1 AT3G18100 40.426 94 56 0 69 162 546 639 3.85e-16 80.1
MS.gene022306.t1 AT3G18100 29.032 155 102 4 9 162 441 588 4.70e-13 70.5
MS.gene022306.t1 AT3G18100 40.426 94 56 0 69 162 498 591 5.00e-16 79.7
MS.gene022306.t1 AT3G18100 29.032 155 102 4 9 162 393 540 4.32e-13 70.5
MS.gene022306.t1 AT3G18100 40.426 94 56 0 69 162 333 426 6.53e-16 79.0
MS.gene022306.t1 AT3G18100 29.032 155 102 4 9 162 228 375 8.15e-13 69.7
MS.gene022306.t1 AT3G18100 40.426 94 56 0 69 162 385 478 6.75e-16 79.0
MS.gene022306.t1 AT3G18100 29.032 155 102 4 9 162 280 427 8.62e-13 69.7
MS.gene022306.t1 AT5G40350 44.737 76 41 1 102 177 8 82 1.20e-15 74.3
MS.gene022306.t1 AT5G59780 41.096 73 43 0 102 174 23 95 2.14e-15 74.3
MS.gene022306.t1 AT1G22640 52.459 61 29 0 113 173 2 62 2.17e-15 74.3
MS.gene022306.t1 AT3G46130 41.096 73 43 0 102 174 23 95 6.12e-15 73.6
MS.gene022306.t1 AT3G46130 41.096 73 43 0 102 174 13 85 6.23e-15 73.6
MS.gene022306.t1 AT1G71030 41.176 68 40 0 105 172 5 72 2.60e-14 70.9
MS.gene022306.t1 AT1G71030 41.176 68 40 0 105 172 19 86 2.88e-14 70.9
MS.gene022306.t1 AT3G47600 36.842 95 49 1 78 172 29 112 4.67e-14 72.4
MS.gene022306.t1 AT5G14750 35.616 73 47 0 113 185 2 74 6.34e-14 68.6
MS.gene022306.t1 AT5G14750 35.616 73 47 0 113 185 2 74 6.34e-14 68.6
MS.gene022306.t1 AT1G66380 50.794 63 31 0 102 164 11 73 3.33e-13 65.5
MS.gene022306.t1 AT3G23250 45.614 57 31 0 113 169 2 58 9.89e-12 64.3

Find 56 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAAATGGAAAATAATTT+TGG 0.166549 3.4:-74561650 None:intergenic
AAGAAGATCAACTTTATAAA+AGG 0.205425 3.4:+74561816 MS.gene022306:CDS
GTTTCTTGAGAAATATTAAA+TGG 0.212262 3.4:-74561663 None:intergenic
GATGAGAATTTGTTTCAAAA+TGG 0.230233 3.4:+74563012 MS.gene022306:CDS
CTTTGATCTACCCTTTCTTT+TGG 0.231362 3.4:-74562767 None:intergenic
AGAAATGCCACTAGATATTA+TGG 0.284041 3.4:+74563122 MS.gene022306:CDS
TCATCTAAAGCCTGACATTA+AGG 0.317779 3.4:+74562127 MS.gene022306:CDS
GAGAACATGGTTTGAGAAAA+TGG 0.322172 3.4:+74562042 MS.gene022306:CDS
TAAGAAGGAGATGGATTTGA+TGG 0.326017 3.4:+74563167 MS.gene022306:CDS
TTTGTAGAAGAGTTCCTTTA+GGG 0.335398 3.4:-74562792 None:intergenic
TGGCATGAACAGAAATAATA+AGG 0.340684 3.4:+74561755 MS.gene022306:CDS
TGCTGAAGCTGATCAAATTA+TGG 0.373684 3.4:+74563071 MS.gene022306:CDS
TTCTCTTTGTTGCATTCCAA+TGG 0.381694 3.4:-74562735 None:intergenic
GGTACCAAACACTGATCATT+AGG 0.389697 3.4:-74562952 None:intergenic
ATGAGAATTTGTTTCAAAAT+GGG 0.396459 3.4:+74563013 MS.gene022306:CDS
AAACAGGTTGTTGGTTCAGC+TGG 0.412723 3.4:+74562016 MS.gene022306:intron
GAGAATTTGCCTGGTAGAAT+AGG 0.417263 3.4:+74562077 MS.gene022306:CDS
AATGGGCGGAGATAGCTAAA+AGG 0.422785 3.4:+74562680 MS.gene022306:CDS
TCAGGCTTTCTAGAGGCATA+AGG 0.428609 3.4:-74561783 None:intergenic
ATGAAGAGATAGGAAACAAA+TGG 0.432519 3.4:+74562662 MS.gene022306:CDS
GTTCAGCTGGTTGGAGAACA+TGG 0.436361 3.4:+74562029 MS.gene022306:CDS
GGAGATGGATTTGATGGAGA+TGG 0.438443 3.4:+74563173 MS.gene022306:CDS
GAATAATCAAATGGAAATGA+TGG 0.445628 3.4:+74561620 None:intergenic
CCTTATTGCAGAAGGACATA+TGG 0.449990 3.4:+74562605 MS.gene022306:intron
AAGACAATACTCCAAAAGAA+AGG 0.464183 3.4:+74562756 MS.gene022306:CDS
TAAGAATTCACCTTAATGTC+AGG 0.466977 3.4:-74562137 None:intergenic
AGAAGATCAACTTTATAAAA+GGG 0.467069 3.4:+74561817 MS.gene022306:CDS
GGACATATGGAGTGAGGAAG+AGG 0.467712 3.4:+74562618 MS.gene022306:CDS
CATATTGCTGAGAATTTGCC+TGG 0.468585 3.4:+74562068 MS.gene022306:CDS
ATCAAAGCACATGAAGAGAT+AGG 0.469111 3.4:+74562652 MS.gene022306:CDS
GTGAATTATTACAAAAGAGT+TGG 0.476372 3.4:+74561735 MS.gene022306:CDS
TACAACACTATTCAAAGGCT+TGG 0.480870 3.4:-74561685 None:intergenic
GATATGCATGAGACTTCATC+TGG 0.491162 3.4:-74561708 None:intergenic
GCTTGGAGTTGAAGTTAAGA+AGG 0.493540 3.4:+74563152 MS.gene022306:CDS
AGTTGAAGTTAAGAAGGAGA+TGG 0.502240 3.4:+74563158 MS.gene022306:CDS
GATATTATGGAATCTATGCT+TGG 0.512953 3.4:+74563135 MS.gene022306:CDS
TTTCTTCTATAATCTTTCGG+AGG 0.530747 3.4:-74562847 None:intergenic
TTTGGTAATGACATCAACAT+TGG 0.535795 3.4:+74563234 MS.gene022306:CDS
GGTAGATCAAAGTACCCTAA+AGG 0.542452 3.4:+74562778 MS.gene022306:CDS
AGGTTGTTGGTTCAGCTGGT+TGG 0.546665 3.4:+74562020 MS.gene022306:intron
AGACAATACTCCAAAAGAAA+GGG 0.551275 3.4:+74562757 MS.gene022306:CDS
TGAAGAGATAGGAAACAAAT+GGG 0.553849 3.4:+74562663 MS.gene022306:CDS
TCTGGTACAACACTATTCAA+AGG 0.554355 3.4:-74561690 None:intergenic
TTCTTCTATAATCTTTCGGA+GGG 0.559200 3.4:-74562846 None:intergenic
AACTTTCTCAGGCTTTCTAG+AGG 0.574016 3.4:-74561790 None:intergenic
GAGATAGCTAAAAGGTTACC+AGG 0.574186 3.4:+74562688 MS.gene022306:CDS
TTCAGTTTGTTGAGACTGAG+AGG 0.582327 3.4:-74562920 None:intergenic
GGATAATGTTGTGCATCTGT+TGG 0.585302 3.4:-74562899 None:intergenic
GAAGCTGATCAAATTATGGA+AGG 0.586708 3.4:+74563075 MS.gene022306:CDS
ACATCATCAAAATCACAAGT+TGG 0.586726 3.4:-74562973 None:intergenic
TCAACTTTATAAAAGGGCAA+TGG 0.588167 3.4:+74561823 MS.gene022306:CDS
GAAAACAATGCAGAGAGAGA+TGG 0.604304 3.4:+74562099 MS.gene022306:CDS
AATGGACAGTAGAAGAAGAT+CGG 0.617069 3.4:+74561841 MS.gene022306:CDS
ATAGATTCCATAATATCTAG+TGG 0.637129 3.4:-74563129 None:intergenic
GCAGAAGGACATATGGAGTG+AGG 0.656245 3.4:+74562612 MS.gene022306:intron
AGAGATAGGAAACAAATGGG+CGG 0.736615 3.4:+74562666 MS.gene022306:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAATGGAAAATAATTT+TGG - chr3.4:74561653-74561672 None:intergenic 10.0%
!!! AAAAAAAAAGTACCTATAAA+AGG - chr3.4:74561943-74561962 None:intergenic 15.0%
!!! AAAAAGTACAAATAATAATG+TGG + chr3.4:74562339-74562358 MS.gene022306:intron 15.0%
!! AAGAAGATCAACTTTATAAA+AGG + chr3.4:74561816-74561835 MS.gene022306:CDS 20.0%
!! AGAAGATCAACTTTATAAAA+GGG + chr3.4:74561817-74561836 MS.gene022306:CDS 20.0%
!! GTTTCTTGAGAAATATTAAA+TGG - chr3.4:74561666-74561685 None:intergenic 20.0%
!! TTTAGATCAAAATTCCAAAT+TGG - chr3.4:74561967-74561986 None:intergenic 20.0%
!!! ATGAGAATTTGTTTCAAAAT+GGG + chr3.4:74563013-74563032 MS.gene022306:CDS 20.0%
!!! GTACTTTTTTTTTACCAATT+TGG + chr3.4:74561950-74561969 MS.gene022306:intron 20.0%
!!! TTTGGAATTTTGATCTAAAA+AGG + chr3.4:74561968-74561987 MS.gene022306:intron 20.0%
! AAAACTCAATCAAAAACCAT+TGG + chr3.4:74562719-74562738 MS.gene022306:CDS 25.0%
! ATAGATTCCATAATATCTAG+TGG - chr3.4:74563132-74563151 None:intergenic 25.0%
! GTGAATTATTACAAAAGAGT+TGG + chr3.4:74561735-74561754 MS.gene022306:CDS 25.0%
! TAATAAATCTTCGTTGAAGT+TGG + chr3.4:74562266-74562285 MS.gene022306:intron 25.0%
! TGTTTGCAATAAGATGTTTA+AGG + chr3.4:74562379-74562398 MS.gene022306:intron 25.0%
!! GATGAGAATTTGTTTCAAAA+TGG + chr3.4:74563012-74563031 MS.gene022306:CDS 25.0%
!! GGTTTTCTTCTATAATCTTT+CGG - chr3.4:74562853-74562872 None:intergenic 25.0%
!! TCTTTTGTAATAATTCACTG+AGG - chr3.4:74561733-74561752 None:intergenic 25.0%
!!! ATCTTCTTTTTAACTTTCTC+AGG - chr3.4:74561804-74561823 None:intergenic 25.0%
!!! TACTTCACATTTCTTGTTTT+TGG + chr3.4:74562408-74562427 MS.gene022306:intron 25.0%
AAGACAATACTCCAAAAGAA+AGG + chr3.4:74562756-74562775 MS.gene022306:CDS 30.0%
ACATCATCAAAATCACAAGT+TGG - chr3.4:74562976-74562995 None:intergenic 30.0%
ACTTCTTTATAGTCTATCGA+AGG - chr3.4:74562242-74562261 None:intergenic 30.0%
AGAAATGCCACTAGATATTA+TGG + chr3.4:74563122-74563141 MS.gene022306:CDS 30.0%
AGACAATACTCCAAAAGAAA+GGG + chr3.4:74562757-74562776 MS.gene022306:CDS 30.0%
AGATGAGACATACATTTGTT+AGG - chr3.4:74562300-74562319 None:intergenic 30.0%
ATGAAGAGATAGGAAACAAA+TGG + chr3.4:74562662-74562681 MS.gene022306:CDS 30.0%
CTTCTTTATAGTCTATCGAA+GGG - chr3.4:74562241-74562260 None:intergenic 30.0%
GATATTATGGAATCTATGCT+TGG + chr3.4:74563135-74563154 MS.gene022306:CDS 30.0%
TAAGAATTCACCTTAATGTC+AGG - chr3.4:74562140-74562159 None:intergenic 30.0%
TATTGCAAACACATGTGTAT+CGG - chr3.4:74562370-74562389 None:intergenic 30.0%
TCAACTTTATAAAAGGGCAA+TGG + chr3.4:74561823-74561842 MS.gene022306:CDS 30.0%
TGAAGAGATAGGAAACAAAT+GGG + chr3.4:74562663-74562682 MS.gene022306:CDS 30.0%
TGGCATGAACAGAAATAATA+AGG + chr3.4:74561755-74561774 MS.gene022306:CDS 30.0%
TTCTCATCGAAAGAAAAATC+CGG - chr3.4:74563000-74563019 None:intergenic 30.0%
TTCTTCTATAATCTTTCGGA+GGG - chr3.4:74562849-74562868 None:intergenic 30.0%
TTTCTTCTATAATCTTTCGG+AGG - chr3.4:74562850-74562869 None:intergenic 30.0%
TTTGTAGAAGAGTTCCTTTA+GGG - chr3.4:74562795-74562814 None:intergenic 30.0%
! GATGAGACATACATTTGTTA+GGG - chr3.4:74562299-74562318 None:intergenic 30.0%
! TGCAATAAGATGTTTAAGGT+AGG + chr3.4:74562383-74562402 MS.gene022306:intron 30.0%
! TTTTCCTAATGATCAGTGTT+TGG + chr3.4:74562948-74562967 MS.gene022306:CDS 30.0%
! TTTTGTAGAAGAGTTCCTTT+AGG - chr3.4:74562796-74562815 None:intergenic 30.0%
! TTTTTCATAGCATTAGCTGA+AGG - chr3.4:74562874-74562893 None:intergenic 30.0%
!! GTGACTGTTTTTCCTTTTAT+AGG + chr3.4:74561928-74561947 MS.gene022306:intron 30.0%
!! TTTGGTAATGACATCAACAT+TGG + chr3.4:74563234-74563253 MS.gene022306:CDS 30.0%
!!! TTTTCAAGTGACTCGTATTT+TGG + chr3.4:74563216-74563235 MS.gene022306:CDS 30.0%
AATGGACAGTAGAAGAAGAT+CGG + chr3.4:74561841-74561860 MS.gene022306:CDS 35.0%
AGTTGAAGTTAAGAAGGAGA+TGG + chr3.4:74563158-74563177 MS.gene022306:CDS 35.0%
ATATGTGTGCATGCAAAAAC+AGG + chr3.4:74562000-74562019 MS.gene022306:intron 35.0%
ATCAAAGCACATGAAGAGAT+AGG + chr3.4:74562652-74562671 MS.gene022306:CDS 35.0%
GAAGCTGATCAAATTATGGA+AGG + chr3.4:74563075-74563094 MS.gene022306:CDS 35.0%
GAGAACATGGTTTGAGAAAA+TGG + chr3.4:74562042-74562061 MS.gene022306:CDS 35.0%
TAAATCTTCGTTGAAGTTGG+TGG + chr3.4:74562269-74562288 MS.gene022306:intron 35.0%
TACAACACTATTCAAAGGCT+TGG - chr3.4:74561688-74561707 None:intergenic 35.0%
TCTCATCGAAAGAAAAATCC+GGG - chr3.4:74562999-74563018 None:intergenic 35.0%
TCTGGTACAACACTATTCAA+AGG - chr3.4:74561693-74561712 None:intergenic 35.0%
TGCTGAAGCTGATCAAATTA+TGG + chr3.4:74563071-74563090 MS.gene022306:CDS 35.0%
TTCTCTTTGTTGCATTCCAA+TGG - chr3.4:74562738-74562757 None:intergenic 35.0%
! ATTGAGTTTTCAGTTCTTCC+TGG - chr3.4:74562709-74562728 None:intergenic 35.0%
! CATTGTTTTCCTATTCTACC+AGG - chr3.4:74562089-74562108 None:intergenic 35.0%
! CTTTGATCTACCCTTTCTTT+TGG - chr3.4:74562770-74562789 None:intergenic 35.0%
! TAAGAAGGAGATGGATTTGA+TGG + chr3.4:74563167-74563186 MS.gene022306:CDS 35.0%
! TCATCTAAAGCCTGACATTA+AGG + chr3.4:74562127-74562146 MS.gene022306:CDS 35.0%
!!! TTGATGGAGATGGTTTTTTC+AGG + chr3.4:74563183-74563202 MS.gene022306:CDS 35.0%
!!! TTGTGATTTTGATGATGTCC+CGG + chr3.4:74562978-74562997 MS.gene022306:CDS 35.0%
AACTTTCTCAGGCTTTCTAG+AGG - chr3.4:74561793-74561812 None:intergenic 40.0%
AGAGATAGGAAACAAATGGG+CGG + chr3.4:74562666-74562685 MS.gene022306:CDS 40.0%
CATATTGCTGAGAATTTGCC+TGG + chr3.4:74562068-74562087 MS.gene022306:CDS 40.0%
CCATATGTCCTTCTGCAATA+AGG - chr3.4:74562608-74562627 None:intergenic 40.0%
CCTTATTGCAGAAGGACATA+TGG + chr3.4:74562605-74562624 MS.gene022306:intron 40.0%
GAAAACAATGCAGAGAGAGA+TGG + chr3.4:74562099-74562118 MS.gene022306:CDS 40.0%
GAGAATTTGCCTGGTAGAAT+AGG + chr3.4:74562077-74562096 MS.gene022306:CDS 40.0%
GAGATAGCTAAAAGGTTACC+AGG + chr3.4:74562688-74562707 MS.gene022306:CDS 40.0%
GATATGCATGAGACTTCATC+TGG - chr3.4:74561711-74561730 None:intergenic 40.0%
GCTTGGAGTTGAAGTTAAGA+AGG + chr3.4:74563152-74563171 MS.gene022306:CDS 40.0%
GGATAATGTTGTGCATCTGT+TGG - chr3.4:74562902-74562921 None:intergenic 40.0%
GGTACCAAACACTGATCATT+AGG - chr3.4:74562955-74562974 None:intergenic 40.0%
TGCATGCAAAAACAGGTTGT+TGG + chr3.4:74562007-74562026 MS.gene022306:intron 40.0%
! ATGTTGTGCCTTATTGCAGA+AGG + chr3.4:74562597-74562616 MS.gene022306:intron 40.0%
! GGTAGATCAAAGTACCCTAA+AGG + chr3.4:74562778-74562797 MS.gene022306:CDS 40.0%
!! TAGCACATTAGCACTGACTT+AGG + chr3.4:74562198-74562217 MS.gene022306:intron 40.0%
!! TTCAGTTTGTTGAGACTGAG+AGG - chr3.4:74562923-74562942 None:intergenic 40.0%
AATGGGCGGAGATAGCTAAA+AGG + chr3.4:74562680-74562699 MS.gene022306:CDS 45.0%
! GGAGATGGATTTGATGGAGA+TGG + chr3.4:74563173-74563192 MS.gene022306:CDS 45.0%
! TCAGGCTTTCTAGAGGCATA+AGG - chr3.4:74561786-74561805 None:intergenic 45.0%
!! AAACAGGTTGTTGGTTCAGC+TGG + chr3.4:74562016-74562035 MS.gene022306:intron 45.0%
GCAGAAGGACATATGGAGTG+AGG + chr3.4:74562612-74562631 MS.gene022306:intron 50.0%
GGACATATGGAGTGAGGAAG+AGG + chr3.4:74562618-74562637 MS.gene022306:CDS 50.0%
GTTCAGCTGGTTGGAGAACA+TGG + chr3.4:74562029-74562048 MS.gene022306:CDS 50.0%
! CTTTCGGAGGGTTTTCGTCT+AGG - chr3.4:74562837-74562856 None:intergenic 50.0%
!! AGGTTGTTGGTTCAGCTGGT+TGG + chr3.4:74562020-74562039 MS.gene022306:intron 50.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 74561630 74563263 74561630 ID=MS.gene022306
chr3.4 mRNA 74561630 74563263 74561630 ID=MS.gene022306.t1;Parent=MS.gene022306
chr3.4 exon 74561630 74561862 74561630 ID=MS.gene022306.t1.exon1;Parent=MS.gene022306.t1
chr3.4 CDS 74561630 74561862 74561630 ID=cds.MS.gene022306.t1;Parent=MS.gene022306.t1
chr3.4 exon 74562022 74562148 74562022 ID=MS.gene022306.t1.exon2;Parent=MS.gene022306.t1
chr3.4 CDS 74562022 74562148 74562022 ID=cds.MS.gene022306.t1;Parent=MS.gene022306.t1
chr3.4 exon 74562616 74563263 74562616 ID=MS.gene022306.t1.exon3;Parent=MS.gene022306.t1
chr3.4 CDS 74562616 74563263 74562616 ID=cds.MS.gene022306.t1;Parent=MS.gene022306.t1
Gene Sequence

>MS.gene022306

ATGGAAATGATGGTTACAAACCAAAATTATTTTCCATTTAATATTTCTCAAGAAACCAAGCCTTTGAATAGTGTTGTACCAGATGAAGTCTCATGCATATCCTCAGTGAATTATTACAAAAGAGTTGGCATGAACAGAAATAATAAGGCATATCCTTATGCCTCTAGAAAGCCTGAGAAAGTTAAAAAGAAGATCAACTTTATAAAAGGGCAATGGACAGTAGAAGAAGATCGGTACATACATAAAAACATGAAACATTTTTTTTTCTTACTATTATTTATCAGTTACTTTTTAATTTGTGACTGTTTTTCCTTTTATAGGTACTTTTTTTTTACCAATTTGGAATTTTGATCTAAAAAGGTTATGATGTATATGTGTGCATGCAAAAACAGGTTGTTGGTTCAGCTGGTTGGAGAACATGGTTTGAGAAAATGGTCTCATATTGCTGAGAATTTGCCTGGTAGAATAGGAAAACAATGCAGAGAGAGATGGCATAATCATCTAAAGCCTGACATTAAGGTGAATTCTTATTTACTATATTATATACATATACTTTTATCACTTAGCTTAGCACATTAGCACTGACTTAGGTTCAAATTTGACATTCTCCCTTCGATAGACTATAAAGAAGTTATATAATAAATCTTCGTTGAAGTTGGTGGTTTTCCCTAACAAATGTATGTCTCATCTAATCTAAATTTTTATCGATAAAAAGTACAAATAATAATGTGGAAATACCGATACACATGTGTTTGCAATAAGATGTTTAAGGTAGGTTTACTTCACATTTCTTGTTTTTGGTTTTTATTTTCAAATCAACTAATAAACATTATACGATATAGATTTAAAATTGAACTCGCTATTTTCTTTTACATTTTGTTCACTATTTGAGTCTTTCATCGCTTCTTAACAATTTAAAACGAATACAAATTTTAGATATCGAAACTAAAAAATAAATTTTCAATTCATGTTGTGCCTTATTGCAGAAGGACATATGGAGTGAGGAAGAGGACAACATATTGATCAAAGCACATGAAGAGATAGGAAACAAATGGGCGGAGATAGCTAAAAGGTTACCAGGAAGAACTGAAAACTCAATCAAAAACCATTGGAATGCAACAAAGAGAAGACAATACTCCAAAAGAAAGGGTAGATCAAAGTACCCTAAAGGAACTCTTCTACAAAAATATATCAAGAGCTTAAACCTAGACGAAAACCCTCCGAAAGATTATAGAAGAAAACCTTCAGCTAATGCTATGAAAAACAAAACCAACAGATGCACAACATTATCCTCTCAGTCTCAACAAACTGAACAATTTTTTCCTAATGATCAGTGTTTGGTACCAACTTGTGATTTTGATGATGTCCCGGATTTTTCTTTCGATGAGAATTTGTTTCAAAATGGGTGTAGTATTGATTCTCTACTAGATGATATGCAATGTGCTGAAGCTGATCAAATTATGGAAGGAAAAAAACATTTTGATGTTGAGACAGAAATGCCACTAGATATTATGGAATCTATGCTTGGAGTTGAAGTTAAGAAGGAGATGGATTTGATGGAGATGGTTTTTTCAGGTCAACGAAAATTTTCAAGTGACTCGTATTTTGGTAATGACATCAACATTGGTTTGTGA
Protein sequence

>MS.gene022306.t1

MEMMVTNQNYFPFNISQETKPLNSVVPDEVSCISSVNYYKRVGMNRNNKAYPYASRKPEKVKKKINFIKGQWTVEEDRLLVQLVGEHGLRKWSHIAENLPGRIGKQCRERWHNHLKPDIKKDIWSEEEDNILIKAHEEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKGRSKYPKGTLLQKYIKSLNLDENPPKDYRRKPSANAMKNKTNRCTTLSSQSQQTEQFFPNDQCLVPTCDFDDVPDFSFDENLFQNGCSIDSLLDDMQCAEADQIMEGKKHFDVETEMPLDIMESMLGVEVKKEMDLMEMVFSGQRKFSSDSYFGNDINIGL