Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022385.t1 | KEH35023.1 | 98.8 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 6.70E-88 | 333.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022385.t1 | P51567 | 75.6 | 164 | 36 | 2 | 1 | 160 | 1 | 164 | 4.6e-69 | 262.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022385.t1 | G7J475 | 98.8 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 4.8e-88 | 333.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022385.t1 | MTR_3g076540 | 84.103 | 195 | 31 | 0 | 1 | 195 | 1 | 195 | 1.08e-115 | 336 |
| MS.gene022385.t1 | MTR_3g076540 | 84.103 | 195 | 31 | 0 | 1 | 195 | 1 | 195 | 2.00e-115 | 336 |
| MS.gene022385.t1 | MTR_4g104620 | 68.844 | 199 | 58 | 1 | 1 | 195 | 1 | 199 | 3.27e-92 | 276 |
| MS.gene022385.t1 | MTR_3g086530 | 59.259 | 162 | 59 | 3 | 3 | 160 | 1 | 159 | 1.15e-62 | 197 |
| MS.gene022385.t1 | MTR_3g086530 | 51.244 | 201 | 91 | 3 | 3 | 199 | 1 | 198 | 5.84e-62 | 197 |
| MS.gene022385.t1 | MTR_3g086530 | 51.244 | 201 | 91 | 3 | 3 | 199 | 1 | 198 | 1.15e-61 | 198 |
| MS.gene022385.t1 | MTR_3g076540 | 74.336 | 113 | 29 | 0 | 83 | 195 | 1 | 113 | 6.02e-49 | 163 |
| MS.gene022385.t1 | MTR_3g109390 | 47.799 | 159 | 51 | 4 | 12 | 160 | 4 | 140 | 1.37e-40 | 141 |
| MS.gene022385.t1 | MTR_3g109390 | 47.799 | 159 | 51 | 4 | 12 | 160 | 4 | 140 | 5.05e-40 | 141 |
| MS.gene022385.t1 | MTR_3g109390 | 47.799 | 159 | 51 | 4 | 12 | 160 | 4 | 140 | 5.14e-40 | 141 |
| MS.gene022385.t1 | MTR_3g109390 | 63.265 | 98 | 35 | 1 | 64 | 160 | 21 | 118 | 2.48e-38 | 136 |
| MS.gene022385.t1 | MTR_4g104620 | 90.909 | 66 | 6 | 0 | 95 | 160 | 5 | 70 | 3.28e-36 | 129 |
| MS.gene022385.t1 | MTR_3g076540 | 69.792 | 96 | 29 | 0 | 100 | 195 | 1 | 96 | 1.39e-35 | 127 |
| MS.gene022385.t1 | MTR_4g104620 | 95.082 | 61 | 3 | 0 | 100 | 160 | 1 | 61 | 8.96e-34 | 123 |
| MS.gene022385.t1 | MTR_3g109390 | 59.375 | 64 | 26 | 0 | 97 | 160 | 64 | 127 | 3.63e-19 | 84.7 |
| MS.gene022385.t1 | MTR_3g109390 | 59.375 | 64 | 26 | 0 | 97 | 160 | 86 | 149 | 4.47e-19 | 84.7 |
| MS.gene022385.t1 | MTR_3g072510 | 60.938 | 64 | 21 | 1 | 34 | 93 | 16 | 79 | 1.63e-16 | 73.2 |
| MS.gene022385.t1 | MTR_3g086530 | 73.810 | 42 | 11 | 0 | 119 | 160 | 1 | 42 | 3.67e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022385.t1 | AT4G24740 | 65.327 | 199 | 65 | 2 | 1 | 195 | 1 | 199 | 6.48e-88 | 262 |
| MS.gene022385.t1 | AT4G24740 | 65.327 | 199 | 65 | 2 | 1 | 195 | 1 | 199 | 9.35e-88 | 262 |
| MS.gene022385.t1 | AT4G24740 | 65.327 | 199 | 65 | 2 | 1 | 195 | 1 | 199 | 4.74e-87 | 263 |
| MS.gene022385.t1 | AT4G24740 | 64.596 | 161 | 54 | 1 | 38 | 195 | 1 | 161 | 9.98e-68 | 213 |
| MS.gene022385.t1 | AT3G53570 | 46.377 | 207 | 100 | 3 | 1 | 199 | 3 | 206 | 3.77e-52 | 174 |
| MS.gene022385.t1 | AT3G53570 | 46.377 | 207 | 100 | 3 | 1 | 199 | 3 | 206 | 3.77e-52 | 174 |
| MS.gene022385.t1 | AT3G53570 | 46.377 | 207 | 100 | 3 | 1 | 199 | 17 | 220 | 4.67e-52 | 174 |
| MS.gene022385.t1 | AT3G53570 | 46.377 | 207 | 100 | 3 | 1 | 199 | 17 | 220 | 4.67e-52 | 174 |
| MS.gene022385.t1 | AT3G53570 | 46.377 | 207 | 100 | 3 | 1 | 199 | 17 | 220 | 4.67e-52 | 174 |
| MS.gene022385.t1 | AT4G32660 | 45.556 | 180 | 73 | 2 | 19 | 195 | 15 | 172 | 2.43e-44 | 151 |
| MS.gene022385.t1 | AT4G32660 | 45.556 | 180 | 73 | 2 | 19 | 195 | 7 | 164 | 3.47e-44 | 152 |
| MS.gene022385.t1 | AT4G32660 | 45.556 | 180 | 73 | 2 | 19 | 195 | 15 | 172 | 4.12e-44 | 152 |
| MS.gene022385.t1 | AT4G24740 | 65.625 | 96 | 33 | 0 | 100 | 195 | 1 | 96 | 7.47e-35 | 124 |
| MS.gene022385.t1 | AT4G24740 | 65.625 | 96 | 33 | 0 | 100 | 195 | 1 | 96 | 1.85e-34 | 125 |
| MS.gene022385.t1 | AT4G24740 | 65.625 | 96 | 33 | 0 | 100 | 195 | 1 | 96 | 1.85e-34 | 125 |
| MS.gene022385.t1 | AT4G24740 | 65.625 | 96 | 33 | 0 | 100 | 195 | 1 | 96 | 1.85e-34 | 125 |
| MS.gene022385.t1 | AT3G53030 | 39.744 | 78 | 46 | 1 | 80 | 156 | 27 | 104 | 3.36e-11 | 62.0 |
Find 44 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCACTAGTTCTCTGTTTA+AGG | 0.094574 | 3.1:+62743892 | MS.gene022385:CDS |
| TATCGCACGAACAACTTTAA+TGG | 0.165031 | 3.1:-62744396 | None:intergenic |
| AGGAACATTTGGACAGGTTT+TGG | 0.250768 | 3.1:+62744340 | MS.gene022385:CDS |
| CCCAATCGCGCTCTCTTTCT+CGG | 0.321999 | 3.1:-62742759 | None:intergenic |
| CAACAGGTGTTTGAGAAACT+TGG | 0.334035 | 3.1:+62744723 | MS.gene022385:intron |
| ATCACTAGTTCTCTGTTTAA+GGG | 0.336676 | 3.1:+62743893 | MS.gene022385:CDS |
| CGAGATTGGAAGACAACTAT+TGG | 0.340182 | 3.1:+62744809 | MS.gene022385:CDS |
| CTTGCAGTTGTGTGCAAATA+CGG | 0.358647 | 3.1:+62744584 | MS.gene022385:intron |
| ATTGATCTTGTTCGCGAGAT+TGG | 0.361635 | 3.1:+62744795 | MS.gene022385:CDS |
| CAGCATTTCAATTTCAATCA+TGG | 0.362427 | 3.1:-62744438 | None:intergenic |
| CAACTTGGGAAGCATGATAA+AGG | 0.415253 | 3.1:+62744464 | MS.gene022385:CDS |
| AAAATGGGTGAAGGAACATT+TGG | 0.420108 | 3.1:+62744329 | MS.gene022385:CDS |
| GAAAGAGAGCGCGATTGGGC+TGG | 0.428088 | 3.1:+62742763 | MS.gene022385:CDS |
| ACCGAGAAAGAGAGCGCGAT+TGG | 0.428099 | 3.1:+62742758 | MS.gene022385:CDS |
| TGGAGTGCTGGGACAGAGAA+AGG | 0.428372 | 3.1:+62744360 | MS.gene022385:CDS |
| GGCCATTACATGTTTGAGCT+TGG | 0.438463 | 3.1:+62743962 | MS.gene022385:CDS |
| TTTAAGGGAGTTGCTCGAAA+TGG | 0.446694 | 3.1:+62743908 | MS.gene022385:CDS |
| AAAGAGAGCGCGATTGGGCT+GGG | 0.450018 | 3.1:+62742764 | MS.gene022385:CDS |
| TGAATTCTCTCGCAATTACA+TGG | 0.453142 | 3.1:+62742728 | MS.gene022385:CDS |
| ATCTCGCGAACAAGATCAAT+GGG | 0.463178 | 3.1:-62744792 | None:intergenic |
| CGAAGAAAATCGTATAAGCT+TGG | 0.464676 | 3.1:-62744747 | None:intergenic |
| CTTCCGTACAATCATGGAGA+TGG | 0.471197 | 3.1:+62742695 | None:intergenic |
| CTTTGTCGTCATCTCGCCAT+GGG | 0.478622 | 3.1:-62743937 | None:intergenic |
| TTGAAATGCTGCAGCAACTT+GGG | 0.485900 | 3.1:+62744450 | MS.gene022385:CDS |
| CTCCAAGCTCAAACATGTAA+TGG | 0.492085 | 3.1:-62743964 | None:intergenic |
| AATCTCGCGAACAAGATCAA+TGG | 0.492792 | 3.1:-62744793 | None:intergenic |
| ATCGCGCTCTCTTTCTCGGT+GGG | 0.493235 | 3.1:-62742755 | None:intergenic |
| CCGAGAAAGAGAGCGCGATT+GGG | 0.493659 | 3.1:+62742759 | MS.gene022385:CDS |
| TCTTTGTCGTCATCTCGCCA+TGG | 0.511594 | 3.1:-62743938 | None:intergenic |
| GGGTGAAGGAACATTTGGAC+AGG | 0.523233 | 3.1:+62744334 | MS.gene022385:CDS |
| GTGCTGGGACAGAGAAAGGA+AGG | 0.538248 | 3.1:+62744364 | MS.gene022385:CDS |
| ATTGAAATGCTGCAGCAACT+TGG | 0.544165 | 3.1:+62744449 | MS.gene022385:CDS |
| CTAGTGATATTATGTTCTGA+AGG | 0.569411 | 3.1:-62743878 | None:intergenic |
| AGCATGATAAAGGTGGCAAT+CGG | 0.573992 | 3.1:+62744474 | MS.gene022385:CDS |
| TGGCGAGATGACGACAAAGA+TGG | 0.586699 | 3.1:+62743941 | MS.gene022385:CDS |
| GGACAGAGAAAGGAAGGAGA+TGG | 0.597586 | 3.1:+62744370 | MS.gene022385:CDS |
| AATCGCGCTCTCTTTCTCGG+TGG | 0.606061 | 3.1:-62742756 | None:intergenic |
| AATCATGGAGATGGAACGCA+TGG | 0.617183 | 3.1:+62742704 | None:intergenic |
| GGCTGTGTGTAGGCTCAGGT+AGG | 0.618570 | 3.1:+62743812 | MS.gene022385:intron |
| ATGATTACAGATAGAGTCCA+CGG | 0.624047 | 3.1:+62744305 | MS.gene022385:intron |
| TTTGTCGTCATCTCGCCATG+GGG | 0.644464 | 3.1:-62743936 | None:intergenic |
| CTTGGGAAGCATGATAAAGG+TGG | 0.653683 | 3.1:+62744467 | MS.gene022385:CDS |
| TGCGATAAAGAAGTATCGAG+AGG | 0.676523 | 3.1:+62744412 | MS.gene022385:CDS |
| TTGTCGTCATCTCGCCATGG+GGG | 0.690882 | 3.1:-62743935 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATAATTAAAAAAAAT+TGG | - | chr3.1:62743014-62743033 | None:intergenic | 0.0% |
| !! | AACAAAAACACTATAATTAA+TGG | - | chr3.1:62743443-62743462 | None:intergenic | 15.0% |
| !! | ATTTAAACAACAAAATTTAC+AGG | + | chr3.1:62743610-62743629 | MS.gene022385:intron | 15.0% |
| !! | TATCTGTAATCATATAAAAT+GGG | - | chr3.1:62744298-62744317 | None:intergenic | 15.0% |
| !!! | AATTTTTAGGATGAAAAATT+AGG | - | chr3.1:62742814-62742833 | None:intergenic | 15.0% |
| !!! | TAAATTTTGTTGTTTAAATC+CGG | - | chr3.1:62743609-62743628 | None:intergenic | 15.0% |
| !!! | TTTTATATATTCAGTTTGTT+TGG | + | chr3.1:62742891-62742910 | MS.gene022385:intron | 15.0% |
| !! | ATATTGAATTATGTCGTTAT+CGG | + | chr3.1:62743304-62743323 | MS.gene022385:intron | 20.0% |
| !! | ATCTGTAATCATATAAAATG+GGG | - | chr3.1:62744297-62744316 | None:intergenic | 20.0% |
| !! | CTATCTGTAATCATATAAAA+TGG | - | chr3.1:62744299-62744318 | None:intergenic | 20.0% |
| !! | TAGAGTGATTATTTATTTGT+AGG | + | chr3.1:62743394-62743413 | MS.gene022385:intron | 20.0% |
| !!! | AAATTTTGTTGTTTAAATCC+GGG | - | chr3.1:62743608-62743627 | None:intergenic | 20.0% |
| !!! | GTAAACTTGTTAATTAATGA+TGG | - | chr3.1:62744022-62744041 | None:intergenic | 20.0% |
| ! | AAAACACTATAATTAATGGC+AGG | - | chr3.1:62743439-62743458 | None:intergenic | 25.0% |
| ! | AATCACATGTTATGTTATGT+AGG | - | chr3.1:62743284-62743303 | None:intergenic | 25.0% |
| ! | ATACGTGTCTTGATTATATT+GGG | + | chr3.1:62743533-62743552 | MS.gene022385:intron | 25.0% |
| ! | ATGAAAAATTAGGTTACCTT+GGG | - | chr3.1:62742804-62742823 | None:intergenic | 25.0% |
| !! | TTTGTGTGATGATTTTCATT+GGG | + | chr3.1:62743704-62743723 | MS.gene022385:intron | 25.0% |
| !! | TTTTGTGTGATGATTTTCAT+TGG | + | chr3.1:62743703-62743722 | MS.gene022385:intron | 25.0% |
| !!! | ATGTTAACTTGTGTTTTAAG+TGG | + | chr3.1:62743776-62743795 | MS.gene022385:intron | 25.0% |
| AATCATCACACAAAATGACA+AGG | - | chr3.1:62743698-62743717 | None:intergenic | 30.0% | |
| AATGAAAAGTTAGTACTAGC+TGG | + | chr3.1:62743046-62743065 | MS.gene022385:intron | 30.0% | |
| ATCATCACACAAAATGACAA+GGG | - | chr3.1:62743697-62743716 | None:intergenic | 30.0% | |
| ATTCCCTAAACTTTCAAACA+CGG | + | chr3.1:62744107-62744126 | MS.gene022385:intron | 30.0% | |
| CAGCATTTCAATTTCAATCA+TGG | - | chr3.1:62744441-62744460 | None:intergenic | 30.0% | |
| CATACGTGTCTTGATTATAT+TGG | + | chr3.1:62743532-62743551 | MS.gene022385:intron | 30.0% | |
| CTAGTGATATTATGTTCTGA+AGG | - | chr3.1:62743881-62743900 | None:intergenic | 30.0% | |
| GATGAAAAATTAGGTTACCT+TGG | - | chr3.1:62742805-62742824 | None:intergenic | 30.0% | |
| TGAAAAATTAGGTTACCTTG+GGG | - | chr3.1:62742803-62742822 | None:intergenic | 30.0% | |
| TGAATTCAAATGATTGCAAC+AGG | + | chr3.1:62744707-62744726 | MS.gene022385:intron | 30.0% | |
| TGACAAGGGTGATAAAAATA+AGG | - | chr3.1:62743683-62743702 | None:intergenic | 30.0% | |
| ! | AACACGAGATCTGAATTTTT+AGG | - | chr3.1:62742827-62742846 | None:intergenic | 30.0% |
| ! | ATCACTAGTTCTCTGTTTAA+GGG | + | chr3.1:62743893-62743912 | MS.gene022385:CDS | 30.0% |
| ! | CAACAACTTGTGATTTTGAA+AGG | - | chr3.1:62743495-62743514 | None:intergenic | 30.0% |
| ! | CAAGCTTATACGATTTTCTT+CGG | + | chr3.1:62744748-62744767 | MS.gene022385:CDS | 30.0% |
| ! | TATCACTAGTTCTCTGTTTA+AGG | + | chr3.1:62743892-62743911 | MS.gene022385:CDS | 30.0% |
| ! | TTGTGTGATGATTTTCATTG+GGG | + | chr3.1:62743705-62743724 | MS.gene022385:intron | 30.0% |
| !! | GAACTTTGGATGTTCTAAAA+TGG | + | chr3.1:62744227-62744246 | MS.gene022385:intron | 30.0% |
| !! | TGTAGAGTCATTTTGAACTT+TGG | + | chr3.1:62744213-62744232 | MS.gene022385:intron | 30.0% |
| !! | TGTTTTAAGTGGTACATGTA+TGG | + | chr3.1:62743787-62743806 | MS.gene022385:intron | 30.0% |
| !!! | ATGGATTTTGGAGTTTTTGT+TGG | + | chr3.1:62744246-62744265 | MS.gene022385:intron | 30.0% |
| !!! | GGATGTTCTAAAATGGATTT+TGG | + | chr3.1:62744234-62744253 | MS.gene022385:intron | 30.0% |
| AAAATGGGTGAAGGAACATT+TGG | + | chr3.1:62744329-62744348 | MS.gene022385:CDS | 35.0% | |
| AAGTCCGTGTTTGAAAGTTT+AGG | - | chr3.1:62744114-62744133 | None:intergenic | 35.0% | |
| AGTCCGTGTTTGAAAGTTTA+GGG | - | chr3.1:62744113-62744132 | None:intergenic | 35.0% | |
| ATGATTACAGATAGAGTCCA+CGG | + | chr3.1:62744305-62744324 | MS.gene022385:intron | 35.0% | |
| CGAAGAAAATCGTATAAGCT+TGG | - | chr3.1:62744750-62744769 | None:intergenic | 35.0% | |
| GAAAAATTAGGTTACCTTGG+GGG | - | chr3.1:62742802-62742821 | None:intergenic | 35.0% | |
| TATCGCACGAACAACTTTAA+TGG | - | chr3.1:62744399-62744418 | None:intergenic | 35.0% | |
| TATGTCTATTGTTGCAGATC+TGG | + | chr3.1:62742861-62742880 | MS.gene022385:intron | 35.0% | |
| TGAATTCTCTCGCAATTACA+TGG | + | chr3.1:62742728-62742747 | MS.gene022385:CDS | 35.0% | |
| TTAAGTGGTACATGTATGGA+TGG | + | chr3.1:62743791-62743810 | MS.gene022385:intron | 35.0% | |
| TTCCCCAATATACGTGATTT+GGG | + | chr3.1:62744670-62744689 | MS.gene022385:intron | 35.0% | |
| TTTCCCCAATATACGTGATT+TGG | + | chr3.1:62744669-62744688 | MS.gene022385:intron | 35.0% | |
| ! | TTAAGTACTTGTTACACCCT+AGG | + | chr3.1:62744132-62744151 | MS.gene022385:intron | 35.0% |
| !!! | TTCAGATCTCGTGTTTTTTG+AGG | + | chr3.1:62742832-62742851 | MS.gene022385:intron | 35.0% |
| !!! | TTTTGGAGTTTTTGTTGGCT+TGG | + | chr3.1:62744251-62744270 | MS.gene022385:intron | 35.0% |
| AACCCCCAAATCACGTATAT+TGG | - | chr3.1:62744677-62744696 | None:intergenic | 40.0% | |
| AACCGACGCAATGGAATAAA+AGG | - | chr3.1:62744549-62744568 | None:intergenic | 40.0% | |
| AACCTGAAACAGGATTACCT+AGG | - | chr3.1:62744152-62744171 | None:intergenic | 40.0% | |
| AATCTCGCGAACAAGATCAA+TGG | - | chr3.1:62744796-62744815 | None:intergenic | 40.0% | |
| ACCCCCAAATCACGTATATT+GGG | - | chr3.1:62744676-62744695 | None:intergenic | 40.0% | |
| ACCTGAAACAGGATTACCTA+GGG | - | chr3.1:62744151-62744170 | None:intergenic | 40.0% | |
| AGATAGAGTCCACGGAAAAA+TGG | + | chr3.1:62744313-62744332 | MS.gene022385:intron | 40.0% | |
| AGCATGATAAAGGTGGCAAT+CGG | + | chr3.1:62744474-62744493 | MS.gene022385:CDS | 40.0% | |
| AGTATTGCACTTGTGATCGA+AGG | + | chr3.1:62743231-62743250 | MS.gene022385:intron | 40.0% | |
| ATCTCGCGAACAAGATCAAT+GGG | - | chr3.1:62744795-62744814 | None:intergenic | 40.0% | |
| ATGCTTCCTAAACCTGAAAC+AGG | - | chr3.1:62744162-62744181 | None:intergenic | 40.0% | |
| ATTGAAATGCTGCAGCAACT+TGG | + | chr3.1:62744449-62744468 | MS.gene022385:CDS | 40.0% | |
| ATTGATCTTGTTCGCGAGAT+TGG | + | chr3.1:62744795-62744814 | MS.gene022385:CDS | 40.0% | |
| CAACAGGTGTTTGAGAAACT+TGG | + | chr3.1:62744723-62744742 | MS.gene022385:intron | 40.0% | |
| CGAGATTGGAAGACAACTAT+TGG | + | chr3.1:62744809-62744828 | MS.gene022385:CDS | 40.0% | |
| CTCCAAGCTCAAACATGTAA+TGG | - | chr3.1:62743967-62743986 | None:intergenic | 40.0% | |
| CTTGCAGTTGTGTGCAAATA+CGG | + | chr3.1:62744584-62744603 | MS.gene022385:intron | 40.0% | |
| GATAGAGTCCACGGAAAAAT+GGG | + | chr3.1:62744314-62744333 | MS.gene022385:intron | 40.0% | |
| GGTTGTGAAATCATGATGGT+GGG | + | chr3.1:62743739-62743758 | MS.gene022385:intron | 40.0% | |
| TCCCCAATATACGTGATTTG+GGG | + | chr3.1:62744671-62744690 | MS.gene022385:intron | 40.0% | |
| TTCATTGGGGACAAGTACAT+GGG | + | chr3.1:62743718-62743737 | MS.gene022385:intron | 40.0% | |
| TTGAAATGCTGCAGCAACTT+GGG | + | chr3.1:62744450-62744469 | MS.gene022385:CDS | 40.0% | |
| TTTAAGGGAGTTGCTCGAAA+TGG | + | chr3.1:62743908-62743927 | MS.gene022385:CDS | 40.0% | |
| TTTCATTGGGGACAAGTACA+TGG | + | chr3.1:62743717-62743736 | MS.gene022385:intron | 40.0% | |
| ! | AGGAACATTTGGACAGGTTT+TGG | + | chr3.1:62744340-62744359 | MS.gene022385:CDS | 40.0% |
| ! | CAACTTGGGAAGCATGATAA+AGG | + | chr3.1:62744464-62744483 | MS.gene022385:CDS | 40.0% |
| ! | CACCTTTTATTCCATTGCGT+CGG | + | chr3.1:62744544-62744563 | MS.gene022385:intron | 40.0% |
| ! | CATGGGTTGTGAAATCATGA+TGG | + | chr3.1:62743735-62743754 | MS.gene022385:intron | 40.0% |
| !! | AGGATTGTTTTGTGGACAAG+AGG | + | chr3.1:62743832-62743851 | MS.gene022385:CDS | 40.0% |
| !! | ATTCCATTGCGTCGGTTAAA+TGG | + | chr3.1:62744552-62744571 | MS.gene022385:intron | 40.0% |
| !! | GGTAATCCTGTTTCAGGTTT+AGG | + | chr3.1:62744153-62744172 | MS.gene022385:intron | 40.0% |
| !! | TGCGATAAAGAAGTATCGAG+AGG | + | chr3.1:62744412-62744431 | MS.gene022385:CDS | 40.0% |
| ACCCTAGGTAATCCTGTTTC+AGG | + | chr3.1:62744147-62744166 | MS.gene022385:intron | 45.0% | |
| ACCTCAACAAGCTTGAAGCA+CGG | - | chr3.1:62743360-62743379 | None:intergenic | 45.0% | |
| ATGTATGGATGGCTGTGTGT+AGG | + | chr3.1:62743802-62743821 | MS.gene022385:intron | 45.0% | |
| CCCCCAAATCACGTATATTG+GGG | - | chr3.1:62744675-62744694 | None:intergenic | 45.0% | |
| CGTATTTGCACACAACTGCA+AGG | - | chr3.1:62744586-62744605 | None:intergenic | 45.0% | |
| GCTTGTGACTTTGTAAAGCC+CGG | + | chr3.1:62743587-62743606 | MS.gene022385:intron | 45.0% | |
| GGCCATTACATGTTTGAGCT+TGG | + | chr3.1:62743962-62743981 | MS.gene022385:CDS | 45.0% | |
| GGGTTGTGAAATCATGATGG+TGG | + | chr3.1:62743738-62743757 | MS.gene022385:intron | 45.0% | |
| TATGTAGGACACCGACACAT+TGG | - | chr3.1:62743269-62743288 | None:intergenic | 45.0% | |
| ! | CCCCAATATACGTGATTTGG+GGG | + | chr3.1:62744672-62744691 | MS.gene022385:intron | 45.0% |
| ! | CTTGGGAAGCATGATAAAGG+TGG | + | chr3.1:62744467-62744486 | MS.gene022385:CDS | 45.0% |
| ! | TGATTTGGGGGTTAAGACGT+GGG | + | chr3.1:62744684-62744703 | MS.gene022385:intron | 45.0% |
| !! | GCTCAGGTAGGATTGTTTTG+TGG | + | chr3.1:62743824-62743843 | MS.gene022385:CDS | 45.0% |
| !! | TTCCTTCACCCATTTTTCCG+TGG | - | chr3.1:62744325-62744344 | None:intergenic | 45.0% |
| ACGCCATTTAACCGACGCAA+TGG | - | chr3.1:62744558-62744577 | None:intergenic | 50.0% | |
| AGGTTACCTTGGGGGTTTCA+GGG | - | chr3.1:62742794-62742813 | None:intergenic | 50.0% | |
| CTTTGTCGTCATCTCGCCAT+GGG | - | chr3.1:62743940-62743959 | None:intergenic | 50.0% | |
| GGACAGAGAAAGGAAGGAGA+TGG | + | chr3.1:62744370-62744389 | MS.gene022385:CDS | 50.0% | |
| GGGTGAAGGAACATTTGGAC+AGG | + | chr3.1:62744334-62744353 | MS.gene022385:CDS | 50.0% | |
| GTCCACGGAAAAATGGGTGA+AGG | + | chr3.1:62744320-62744339 | MS.gene022385:CDS | 50.0% | |
| GTGTCTGGTGTCCAATGTGT+CGG | + | chr3.1:62743255-62743274 | MS.gene022385:intron | 50.0% | |
| TAGGTTACCTTGGGGGTTTC+AGG | - | chr3.1:62742795-62742814 | None:intergenic | 50.0% | |
| TCTTTGTCGTCATCTCGCCA+TGG | - | chr3.1:62743941-62743960 | None:intergenic | 50.0% | |
| TGGCGAGATGACGACAAAGA+TGG | + | chr3.1:62743941-62743960 | MS.gene022385:CDS | 50.0% | |
| TTTGTCGTCATCTCGCCATG+GGG | - | chr3.1:62743939-62743958 | None:intergenic | 50.0% | |
| ! | CTTGTGATCGAAGGTGTGTC+TGG | + | chr3.1:62743240-62743259 | MS.gene022385:intron | 50.0% |
| ! | GTGATTTGGGGGTTAAGACG+TGG | + | chr3.1:62744683-62744702 | MS.gene022385:intron | 50.0% |
| !! | TCCGTGCTTCAAGCTTGTTG+AGG | + | chr3.1:62743356-62743375 | MS.gene022385:intron | 50.0% |
| !!! | TGGACAGGTTTTGGAGTGCT+GGG | + | chr3.1:62744349-62744368 | MS.gene022385:CDS | 50.0% |
| !!! | TTGGACAGGTTTTGGAGTGC+TGG | + | chr3.1:62744348-62744367 | MS.gene022385:CDS | 50.0% |
| AATCGCGCTCTCTTTCTCGG+TGG | - | chr3.1:62742759-62742778 | None:intergenic | 55.0% | |
| ATCGCGCTCTCTTTCTCGGT+GGG | - | chr3.1:62742758-62742777 | None:intergenic | 55.0% | |
| CCCAATCGCGCTCTCTTTCT+CGG | - | chr3.1:62742762-62742781 | None:intergenic | 55.0% | |
| CTCGAAATGGTTCTCCCCCA+TGG | + | chr3.1:62743921-62743940 | MS.gene022385:CDS | 55.0% | |
| GGATATCCCTGAAACCCCCA+AGG | + | chr3.1:62742785-62742804 | MS.gene022385:CDS | 55.0% | |
| GTGCTGGGACAGAGAAAGGA+AGG | + | chr3.1:62744364-62744383 | MS.gene022385:CDS | 55.0% | |
| TTGTCGTCATCTCGCCATGG+GGG | - | chr3.1:62743938-62743957 | None:intergenic | 55.0% | |
| ! | AAAGAGAGCGCGATTGGGCT+GGG | + | chr3.1:62742764-62742783 | MS.gene022385:CDS | 55.0% |
| ! | ACCGAGAAAGAGAGCGCGAT+TGG | + | chr3.1:62742758-62742777 | MS.gene022385:CDS | 55.0% |
| ! | CCGAGAAAGAGAGCGCGATT+GGG | + | chr3.1:62742759-62742778 | MS.gene022385:CDS | 55.0% |
| !! | TGGAGTGCTGGGACAGAGAA+AGG | + | chr3.1:62744360-62744379 | MS.gene022385:CDS | 55.0% |
| GGATGGCTGTGTGTAGGCTC+AGG | + | chr3.1:62743808-62743827 | MS.gene022385:intron | 60.0% | |
| GGCTGTGTGTAGGCTCAGGT+AGG | + | chr3.1:62743812-62743831 | MS.gene022385:intron | 60.0% | |
| ! | GAAAGAGAGCGCGATTGGGC+TGG | + | chr3.1:62742763-62742782 | MS.gene022385:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 62742708 | 62744843 | 62742708 | ID=MS.gene022385 |
| chr3.1 | mRNA | 62742708 | 62744843 | 62742708 | ID=MS.gene022385.t1;Parent=MS.gene022385 |
| chr3.1 | exon | 62742708 | 62742806 | 62742708 | ID=MS.gene022385.t1.exon1;Parent=MS.gene022385.t1 |
| chr3.1 | CDS | 62742708 | 62742806 | 62742708 | ID=cds.MS.gene022385.t1;Parent=MS.gene022385.t1 |
| chr3.1 | exon | 62743824 | 62744004 | 62743824 | ID=MS.gene022385.t1.exon2;Parent=MS.gene022385.t1 |
| chr3.1 | CDS | 62743824 | 62744004 | 62743824 | ID=cds.MS.gene022385.t1;Parent=MS.gene022385.t1 |
| chr3.1 | exon | 62744315 | 62744495 | 62744315 | ID=MS.gene022385.t1.exon3;Parent=MS.gene022385.t1 |
| chr3.1 | CDS | 62744315 | 62744495 | 62744315 | ID=cds.MS.gene022385.t1;Parent=MS.gene022385.t1 |
| chr3.1 | exon | 62744591 | 62744638 | 62744591 | ID=MS.gene022385.t1.exon4;Parent=MS.gene022385.t1 |
| chr3.1 | CDS | 62744591 | 62744638 | 62744591 | ID=cds.MS.gene022385.t1;Parent=MS.gene022385.t1 |
| chr3.1 | exon | 62744729 | 62744843 | 62744729 | ID=MS.gene022385.t1.exon5;Parent=MS.gene022385.t1 |
| chr3.1 | CDS | 62744729 | 62744843 | 62744729 | ID=cds.MS.gene022385.t1;Parent=MS.gene022385.t1 |
| Gene Sequence |
| Protein sequence |
