Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022416.t1 | XP_024642224.1 | 96.7 | 459 | 15 | 0 | 1 | 459 | 1 | 459 | 3.30E-273 | 950.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022416.t1 | Q9SZL8 | 39.2 | 434 | 255 | 5 | 33 | 458 | 72 | 504 | 2.1e-90 | 334.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022416.t1 | A0A2Z6M8U9 | 78.4 | 459 | 93 | 2 | 1 | 459 | 1 | 453 | 4.2e-217 | 763.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene022416.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022416.t1 | MTR_0856s0010 | 96.875 | 160 | 5 | 0 | 1 | 160 | 1 | 160 | 3.62e-112 | 327 |
| MS.gene022416.t1 | MTR_6g051425 | 35.602 | 191 | 122 | 1 | 104 | 293 | 94 | 284 | 5.91e-35 | 133 |
| MS.gene022416.t1 | MTR_7g115320 | 61.644 | 73 | 25 | 1 | 121 | 193 | 6 | 75 | 1.74e-24 | 97.1 |
| MS.gene022416.t1 | MTR_0558s0020 | 23.162 | 272 | 182 | 5 | 23 | 271 | 29 | 296 | 5.29e-21 | 93.6 |
| MS.gene022416.t1 | MTR_1g070355 | 29.412 | 238 | 148 | 8 | 40 | 265 | 80 | 309 | 2.18e-19 | 91.3 |
| MS.gene022416.t1 | MTR_8g446020 | 24.138 | 261 | 171 | 7 | 13 | 271 | 21 | 256 | 7.57e-19 | 86.3 |
| MS.gene022416.t1 | MTR_4g035820 | 26.087 | 253 | 173 | 7 | 34 | 275 | 75 | 324 | 1.68e-18 | 88.6 |
| MS.gene022416.t1 | MTR_1g008290 | 34.328 | 134 | 85 | 1 | 94 | 227 | 14 | 144 | 2.32e-18 | 82.0 |
| MS.gene022416.t1 | MTR_7g446510 | 30.952 | 168 | 115 | 1 | 117 | 283 | 166 | 333 | 2.53e-18 | 86.3 |
| MS.gene022416.t1 | MTR_7g446060 | 41.573 | 89 | 50 | 1 | 109 | 197 | 1 | 87 | 7.43e-18 | 80.5 |
| MS.gene022416.t1 | MTR_7g446480 | 30.952 | 168 | 115 | 1 | 117 | 283 | 151 | 318 | 1.09e-17 | 84.0 |
| MS.gene022416.t1 | MTR_7g446520 | 24.473 | 237 | 161 | 3 | 40 | 273 | 94 | 315 | 1.19e-14 | 75.5 |
| MS.gene022416.t1 | MTR_6g090505 | 24.865 | 185 | 137 | 2 | 88 | 270 | 46 | 230 | 2.01e-14 | 75.1 |
| MS.gene022416.t1 | MTR_1g083640 | 23.770 | 244 | 157 | 6 | 23 | 242 | 44 | 282 | 2.02e-14 | 73.9 |
| MS.gene022416.t1 | MTR_6g022070 | 30.233 | 129 | 82 | 2 | 325 | 451 | 1 | 123 | 1.92e-13 | 71.6 |
| MS.gene022416.t1 | MTR_3g012160 | 37.037 | 81 | 50 | 1 | 180 | 260 | 14 | 93 | 5.22e-12 | 62.4 |
| MS.gene022416.t1 | MTR_5g039760 | 26.531 | 196 | 118 | 4 | 32 | 224 | 8 | 180 | 1.52e-11 | 63.5 |
| MS.gene022416.t1 | MTR_7g074790 | 24.852 | 169 | 106 | 3 | 32 | 197 | 8 | 158 | 3.35e-11 | 63.5 |
| MS.gene022416.t1 | MTR_1g013060 | 21.586 | 227 | 168 | 4 | 14 | 231 | 4 | 229 | 3.63e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022416.t1 | AT4G38180 | 38.116 | 467 | 279 | 6 | 1 | 458 | 39 | 504 | 3.38e-102 | 322 |
| MS.gene022416.t1 | AT4G15090 | 37.527 | 461 | 277 | 7 | 8 | 458 | 21 | 480 | 3.67e-99 | 315 |
| MS.gene022416.t1 | AT4G15090 | 37.527 | 461 | 277 | 7 | 8 | 458 | 21 | 480 | 3.67e-99 | 315 |
| MS.gene022416.t1 | AT4G15090 | 37.527 | 461 | 277 | 7 | 8 | 458 | 21 | 480 | 3.67e-99 | 315 |
| MS.gene022416.t1 | AT4G15090 | 37.527 | 461 | 277 | 7 | 8 | 458 | 21 | 480 | 3.67e-99 | 315 |
| MS.gene022416.t1 | AT4G15090 | 37.527 | 461 | 277 | 7 | 8 | 458 | 21 | 480 | 3.67e-99 | 315 |
| MS.gene022416.t1 | AT1G52520 | 35.047 | 428 | 263 | 7 | 34 | 458 | 85 | 500 | 1.75e-86 | 279 |
| MS.gene022416.t1 | AT1G76320 | 34.353 | 425 | 267 | 6 | 38 | 458 | 1 | 417 | 1.64e-83 | 270 |
| MS.gene022416.t1 | AT1G76320 | 34.353 | 425 | 267 | 6 | 38 | 458 | 1 | 417 | 4.69e-83 | 271 |
| MS.gene022416.t1 | AT1G76320 | 34.353 | 425 | 267 | 6 | 38 | 458 | 1 | 417 | 4.69e-83 | 271 |
| MS.gene022416.t1 | AT1G76320 | 34.353 | 425 | 267 | 6 | 38 | 458 | 1 | 417 | 5.51e-83 | 270 |
| MS.gene022416.t1 | AT3G22170 | 33.542 | 480 | 268 | 8 | 8 | 458 | 32 | 489 | 1.40e-82 | 272 |
| MS.gene022416.t1 | AT3G22170 | 33.542 | 480 | 268 | 8 | 8 | 458 | 32 | 489 | 1.40e-82 | 272 |
| MS.gene022416.t1 | AT1G80010 | 33.996 | 453 | 286 | 6 | 14 | 455 | 73 | 523 | 4.43e-81 | 265 |
| MS.gene022416.t1 | AT2G27110 | 35.147 | 441 | 254 | 9 | 21 | 457 | 36 | 448 | 8.29e-80 | 265 |
| MS.gene022416.t1 | AT2G27110 | 35.147 | 441 | 254 | 9 | 21 | 457 | 36 | 448 | 8.29e-80 | 265 |
| MS.gene022416.t1 | AT2G27110 | 42.599 | 277 | 152 | 4 | 184 | 457 | 31 | 303 | 2.18e-71 | 239 |
| MS.gene022416.t1 | AT3G06250 | 33.099 | 426 | 239 | 11 | 33 | 455 | 189 | 571 | 9.10e-68 | 231 |
| MS.gene022416.t1 | AT3G06250 | 33.099 | 426 | 239 | 11 | 33 | 455 | 189 | 571 | 9.10e-68 | 231 |
| MS.gene022416.t1 | AT3G06250 | 33.099 | 426 | 239 | 11 | 33 | 455 | 189 | 571 | 9.10e-68 | 231 |
| MS.gene022416.t1 | AT2G32250 | 32.494 | 437 | 253 | 5 | 24 | 458 | 28 | 424 | 1.36e-67 | 230 |
| MS.gene022416.t1 | AT2G32250 | 32.494 | 437 | 253 | 5 | 24 | 458 | 28 | 424 | 3.21e-67 | 230 |
| MS.gene022416.t1 | AT2G32250 | 32.494 | 437 | 253 | 5 | 24 | 458 | 28 | 424 | 3.21e-67 | 230 |
| MS.gene022416.t1 | AT2G32250 | 32.494 | 437 | 253 | 5 | 24 | 458 | 28 | 424 | 3.21e-67 | 230 |
| MS.gene022416.t1 | AT2G32250 | 32.494 | 437 | 253 | 5 | 24 | 458 | 28 | 424 | 3.39e-67 | 229 |
| MS.gene022416.t1 | AT2G32250 | 32.494 | 437 | 253 | 5 | 24 | 458 | 28 | 424 | 3.39e-67 | 229 |
| MS.gene022416.t1 | AT2G32250 | 32.624 | 423 | 243 | 5 | 38 | 458 | 1 | 383 | 2.03e-66 | 227 |
| MS.gene022416.t1 | AT2G32250 | 32.624 | 423 | 243 | 5 | 38 | 458 | 1 | 383 | 2.11e-66 | 227 |
| MS.gene022416.t1 | AT5G18960 | 33.179 | 431 | 241 | 13 | 30 | 455 | 207 | 595 | 2.74e-65 | 224 |
| MS.gene022416.t1 | AT5G18960 | 33.179 | 431 | 241 | 13 | 30 | 455 | 207 | 595 | 2.74e-65 | 224 |
| MS.gene022416.t1 | AT4G19990 | 30.805 | 435 | 248 | 10 | 40 | 456 | 27 | 426 | 7.97e-63 | 217 |
| MS.gene022416.t1 | AT4G19990 | 30.805 | 435 | 248 | 10 | 40 | 456 | 27 | 426 | 7.97e-63 | 217 |
| MS.gene022416.t1 | AT4G19990 | 30.805 | 435 | 248 | 10 | 40 | 456 | 27 | 426 | 9.25e-63 | 217 |
| MS.gene022416.t1 | AT4G19990 | 30.805 | 435 | 248 | 10 | 40 | 456 | 41 | 440 | 9.89e-63 | 217 |
| MS.gene022416.t1 | AT4G19990 | 30.805 | 435 | 248 | 10 | 40 | 456 | 27 | 426 | 1.61e-62 | 216 |
| MS.gene022416.t1 | AT4G19990 | 30.805 | 435 | 248 | 10 | 40 | 456 | 27 | 426 | 1.61e-62 | 216 |
| MS.gene022416.t1 | AT4G19990 | 32.133 | 361 | 208 | 6 | 98 | 456 | 44 | 369 | 6.53e-60 | 208 |
| MS.gene022416.t1 | AT4G38170 | 37.302 | 252 | 152 | 3 | 208 | 457 | 21 | 268 | 8.72e-56 | 194 |
| MS.gene022416.t1 | AT1G10240 | 28.868 | 433 | 286 | 10 | 34 | 450 | 48 | 474 | 1.02e-49 | 180 |
| MS.gene022416.t1 | AT1G10240 | 28.868 | 433 | 286 | 10 | 34 | 450 | 48 | 474 | 1.02e-49 | 180 |
| MS.gene022416.t1 | AT5G28530 | 26.964 | 471 | 312 | 11 | 9 | 454 | 30 | 493 | 8.56e-47 | 172 |
| MS.gene022416.t1 | AT5G28530 | 26.964 | 471 | 312 | 11 | 9 | 454 | 30 | 493 | 8.56e-47 | 172 |
| MS.gene022416.t1 | AT5G28530 | 26.981 | 467 | 309 | 11 | 9 | 450 | 30 | 489 | 2.09e-46 | 171 |
| MS.gene022416.t1 | AT5G28530 | 23.810 | 462 | 275 | 17 | 9 | 454 | 30 | 430 | 4.38e-19 | 90.5 |
| MS.gene022416.t1 | AT5G28530 | 23.799 | 458 | 272 | 17 | 9 | 450 | 30 | 426 | 9.04e-19 | 89.7 |
Find 72 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTTCATAGAAGAAATT+TGG | 0.144552 | 3.2:-67999612 | None:intergenic |
| CTCACATCTCTTTCATTAAA+TGG | 0.147918 | 3.2:-67999498 | None:intergenic |
| AGGGCTGCTTATGAGTATTT+TGG | 0.200825 | 3.2:+67999687 | MS.gene022416:CDS |
| CTCGCCACAGGTGGTGTTTA+TGG | 0.205906 | 3.2:+67999961 | MS.gene022416:CDS |
| TGTATAACGAACGTCATAAA+TGG | 0.226594 | 3.2:+68000156 | MS.gene022416:CDS |
| TTCATGTAAGGAATGTCTTT+TGG | 0.251842 | 3.2:+67999649 | MS.gene022416:CDS |
| CTTGGATGTGGGTTGCTATC+AGG | 0.301907 | 3.2:+67999807 | MS.gene022416:CDS |
| TTTCTTCTATGAAATAGATT+TGG | 0.305934 | 3.2:+67999617 | MS.gene022416:CDS |
| AGTATACACGCTTTCTTTGA+TGG | 0.331302 | 3.2:+68000239 | MS.gene022416:CDS |
| TTGAACAACCTTGCCTTTGT+AGG | 0.343323 | 3.2:-67999354 | None:intergenic |
| GCGGGTATGGTGATTATAAA+AGG | 0.352027 | 3.2:+68000015 | MS.gene022416:CDS |
| GTTCAAGGCTAACAAGAATA+TGG | 0.357986 | 3.2:+67999371 | MS.gene022416:CDS |
| TTGAGCTTCAACAAAATCAT+TGG | 0.360559 | 3.2:+68000123 | MS.gene022416:CDS |
| CATGGTCAATCAACATTACT+TGG | 0.375579 | 3.2:+67999789 | MS.gene022416:CDS |
| CAACAAAATCATTGGTTGAC+TGG | 0.393166 | 3.2:+68000131 | MS.gene022416:CDS |
| CACCACCTGTGGCGAGTTGT+AGG | 0.411093 | 3.2:-67999954 | None:intergenic |
| AACAAGGAACGACGTGCAAT+TGG | 0.416589 | 3.2:+67999531 | MS.gene022416:CDS |
| TAGAGAATATGCTTTGAGAA+AGG | 0.418901 | 3.2:+67999104 | MS.gene022416:CDS |
| CAATCTCTTGTTAAAGATGC+AGG | 0.422205 | 3.2:+67999459 | MS.gene022416:CDS |
| CCACAATCCACAAAAGCATT+TGG | 0.424359 | 3.2:-67998964 | None:intergenic |
| TGGTCAGTCACAATACCAAC+AGG | 0.431128 | 3.2:-67999894 | None:intergenic |
| AGAGAATATGCTTTGAGAAA+GGG | 0.433857 | 3.2:+67999105 | MS.gene022416:CDS |
| TGAACAACCTTGCCTTTGTA+GGG | 0.436560 | 3.2:-67999353 | None:intergenic |
| CAACCTTGCCTTTGTAGGGC+TGG | 0.439468 | 3.2:-67999349 | None:intergenic |
| ACATCGAGAAAAGGAAATGA+TGG | 0.450797 | 3.2:+67999147 | MS.gene022416:CDS |
| TCATGGCTTCGTTGTATGCT+AGG | 0.452469 | 3.2:+67999864 | MS.gene022416:CDS |
| CAATCAACATTACTTGGATG+TGG | 0.465576 | 3.2:+67999795 | MS.gene022416:CDS |
| TACAAAGGCAAGGTTGTTCA+AGG | 0.468300 | 3.2:+67999356 | MS.gene022416:CDS |
| GTATAACGAACGTCATAAAT+GGG | 0.470238 | 3.2:+68000157 | MS.gene022416:CDS |
| TTTGGGCTGATGCAAGAAGT+AGG | 0.488323 | 3.2:+67999667 | MS.gene022416:CDS |
| AACTTGATACAAATCTTAGC+AGG | 0.490559 | 3.2:-67999270 | None:intergenic |
| TCTTGCATGCACAAGAGATC+GGG | 0.495635 | 3.2:+67999188 | MS.gene022416:CDS |
| TTCTTGCATGCACAAGAGAT+CGG | 0.498229 | 3.2:+67999187 | MS.gene022416:CDS |
| AAGACAAAGAGTCATTTGTA+TGG | 0.499454 | 3.2:+67999832 | MS.gene022416:CDS |
| AAGATTAGAACATCGAGAAA+AGG | 0.501177 | 3.2:+67999138 | MS.gene022416:CDS |
| TGTATCAAGTTGAAAGCAGA+TGG | 0.504773 | 3.2:+67999282 | MS.gene022416:CDS |
| TTGAAGACACGTCCAACAAT+GGG | 0.506967 | 3.2:+67999237 | MS.gene022416:CDS |
| ATTCAAATCAATGATGATGC+AGG | 0.511726 | 3.2:+67999414 | MS.gene022416:CDS |
| CTGGTATGATGAGAATGGTT+AGG | 0.513593 | 3.2:-67999330 | None:intergenic |
| CGACGTGCAATTGGAAAAGA+AGG | 0.525049 | 3.2:+67999540 | MS.gene022416:CDS |
| TCGTTGAGTTGTTGACATAC+CGG | 0.542230 | 3.2:-68000210 | None:intergenic |
| TTGGGCTGATGCAAGAAGTA+GGG | 0.542282 | 3.2:+67999668 | MS.gene022416:CDS |
| CATCGAGAAAAGGAAATGAT+GGG | 0.554779 | 3.2:+67999148 | MS.gene022416:CDS |
| ACCACCTGTGGCGAGTTGTA+GGG | 0.557062 | 3.2:-67999953 | None:intergenic |
| TGTGGTAGTATTCATGATGA+AGG | 0.558676 | 3.2:+67998982 | MS.gene022416:CDS |
| ATTGAAGACACGTCCAACAA+TGG | 0.565861 | 3.2:+67999236 | MS.gene022416:CDS |
| TAGGGCTGGTATGATGAGAA+TGG | 0.573797 | 3.2:-67999335 | None:intergenic |
| TATTGTGACTGACCAATGTA+AGG | 0.579574 | 3.2:+67999902 | MS.gene022416:CDS |
| AATCAACATTACTTGGATGT+GGG | 0.580091 | 3.2:+67999796 | MS.gene022416:CDS |
| AGTTGAAAGCAGATGGATTG+TGG | 0.593315 | 3.2:+67999289 | MS.gene022416:CDS |
| TGGAAAAGAAGGTGATGGCA+AGG | 0.598389 | 3.2:+67999551 | MS.gene022416:CDS |
| ATGTTGAAAATGAAGATACA+TGG | 0.603276 | 3.2:+67999025 | MS.gene022416:CDS |
| TCCCTACAACTCGCCACAGG+TGG | 0.604512 | 3.2:+67999952 | MS.gene022416:CDS |
| GGCAATGCAAAATGCAATCG+AGG | 0.608997 | 3.2:+67999923 | MS.gene022416:CDS |
| GCAATTGGAAAAGAAGGTGA+TGG | 0.609009 | 3.2:+67999546 | MS.gene022416:CDS |
| TCATCATACCAGCCCTACAA+AGG | 0.614008 | 3.2:+67999341 | MS.gene022416:CDS |
| CTCTTGTTAAAGATGCAGGC+GGG | 0.627598 | 3.2:+67999463 | MS.gene022416:CDS |
| TTTGTTGGTGTGAATCACCA+TGG | 0.635015 | 3.2:+67999771 | MS.gene022416:CDS |
| TGTGAGGAATTATGTTAACA+AGG | 0.648059 | 3.2:+67999515 | MS.gene022416:CDS |
| ATCGAGAAAAGGAAATGATG+GGG | 0.649742 | 3.2:+67999149 | MS.gene022416:CDS |
| TCTCTTGTTAAAGATGCAGG+CGG | 0.654412 | 3.2:+67999462 | MS.gene022416:CDS |
| TTGAAAATGAAGATACATGG+TGG | 0.661586 | 3.2:+67999028 | MS.gene022416:CDS |
| ATACCAGCCCTACAAAGGCA+AGG | 0.665308 | 3.2:+67999346 | MS.gene022416:CDS |
| CAAGTAATGTTGATTGACCA+TGG | 0.665568 | 3.2:-67999788 | None:intergenic |
| TGAAAATGAAGATACATGGT+GGG | 0.685627 | 3.2:+67999029 | MS.gene022416:CDS |
| GAGAAAAGGAAATGATGGGG+AGG | 0.686066 | 3.2:+67999152 | MS.gene022416:CDS |
| GGTCAGTCACAATACCAACA+GGG | 0.687173 | 3.2:-67999893 | None:intergenic |
| TATGCCATAAACACCACCTG+TGG | 0.687731 | 3.2:-67999965 | None:intergenic |
| GTCAGTCACAATACCAACAG+GGG | 0.694377 | 3.2:-67999892 | None:intergenic |
| TCAATGATGATGCAGGTGTG+AGG | 0.717261 | 3.2:+67999421 | MS.gene022416:CDS |
| CATTTAATGAAAGAGATGTG+AGG | 0.724148 | 3.2:+67999499 | MS.gene022416:CDS |
| TCAGTCACAATACCAACAGG+GGG | 0.734277 | 3.2:-67999891 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTCTTAAGAAAATATTTTT+GGG | + | chr3.2:68000187-68000206 | MS.gene022416:CDS | 15.0% |
| !! | TCTATTTCATAGAAGAAATT+TGG | - | chr3.2:67999615-67999634 | None:intergenic | 20.0% |
| !! | TTGACAAAAATAGTTTATCA+AGG | - | chr3.2:67999577-67999596 | None:intergenic | 20.0% |
| !! | TTTCTTCTATGAAATAGATT+TGG | + | chr3.2:67999617-67999636 | MS.gene022416:CDS | 20.0% |
| !!! | AAACTATTTTTGTCAAATGA+GGG | + | chr3.2:67999581-67999600 | MS.gene022416:CDS | 20.0% |
| !!! | AAATATTTTCTTAAGAAGGT+TGG | - | chr3.2:68000185-68000204 | None:intergenic | 20.0% |
| !!! | CCAAAAATATTTTCTTAAGA+AGG | - | chr3.2:68000189-68000208 | None:intergenic | 20.0% |
| !!! | CCTTCTTAAGAAAATATTTT+TGG | + | chr3.2:68000186-68000205 | MS.gene022416:CDS | 20.0% |
| !!! | TAAACTATTTTTGTCAAATG+AGG | + | chr3.2:67999580-67999599 | MS.gene022416:CDS | 20.0% |
| ! | ATGTTGAAAATGAAGATACA+TGG | + | chr3.2:67999025-67999044 | MS.gene022416:CDS | 25.0% |
| !! | GAAAAACACATATCTGTTTT+AGG | - | chr3.2:67999057-67999076 | None:intergenic | 25.0% |
| !!! | AAGCTCAAATTTTTCAATGA+AGG | - | chr3.2:68000111-68000130 | None:intergenic | 25.0% |
| !!! | TAGATGATTTTGAAGAGAAA+TGG | + | chr3.2:68000081-68000100 | MS.gene022416:CDS | 25.0% |
| !!! | TTAAGAAAATATTTTTGGGC+CGG | + | chr3.2:68000191-68000210 | MS.gene022416:CDS | 25.0% |
| !!! | TTGTATGGCTTTTTAATTCA+TGG | + | chr3.2:67999847-67999866 | MS.gene022416:CDS | 25.0% |
| AAAATTGCTGAAAAACTCAG+CGG | + | chr3.2:67999996-68000015 | MS.gene022416:CDS | 30.0% | |
| AACTTGATACAAATCTTAGC+AGG | - | chr3.2:67999273-67999292 | None:intergenic | 30.0% | |
| AAGACAAAGAGTCATTTGTA+TGG | + | chr3.2:67999832-67999851 | MS.gene022416:CDS | 30.0% | |
| AAGATTAGAACATCGAGAAA+AGG | + | chr3.2:67999138-67999157 | MS.gene022416:CDS | 30.0% | |
| AATCAACATTACTTGGATGT+GGG | + | chr3.2:67999796-67999815 | MS.gene022416:CDS | 30.0% | |
| CATTTAATGAAAGAGATGTG+AGG | + | chr3.2:67999499-67999518 | MS.gene022416:CDS | 30.0% | |
| CTCACATCTCTTTCATTAAA+TGG | - | chr3.2:67999501-67999520 | None:intergenic | 30.0% | |
| GTATAACGAACGTCATAAAT+GGG | + | chr3.2:68000157-68000176 | MS.gene022416:CDS | 30.0% | |
| TGAAAATGAAGATACATGGT+GGG | + | chr3.2:67999029-67999048 | MS.gene022416:CDS | 30.0% | |
| TGTATAACGAACGTCATAAA+TGG | + | chr3.2:68000156-68000175 | MS.gene022416:CDS | 30.0% | |
| TGTGAGGAATTATGTTAACA+AGG | + | chr3.2:67999515-67999534 | MS.gene022416:CDS | 30.0% | |
| TTGAAAATGAAGATACATGG+TGG | + | chr3.2:67999028-67999047 | MS.gene022416:CDS | 30.0% | |
| TTGAGCTTCAACAAAATCAT+TGG | + | chr3.2:68000123-68000142 | MS.gene022416:CDS | 30.0% | |
| ! | ATTCAAATCAATGATGATGC+AGG | + | chr3.2:67999414-67999433 | MS.gene022416:CDS | 30.0% |
| ! | TCATGTAAGGAATGTCTTTT+GGG | + | chr3.2:67999650-67999669 | MS.gene022416:CDS | 30.0% |
| ! | TTCATGTAAGGAATGTCTTT+TGG | + | chr3.2:67999649-67999668 | MS.gene022416:CDS | 30.0% |
| !! | AGAGAATATGCTTTGAGAAA+GGG | + | chr3.2:67999105-67999124 | MS.gene022416:CDS | 30.0% |
| !! | TAGAGAATATGCTTTGAGAA+AGG | + | chr3.2:67999104-67999123 | MS.gene022416:CDS | 30.0% |
| AAATTGCTGAAAAACTCAGC+GGG | + | chr3.2:67999997-68000016 | MS.gene022416:CDS | 35.0% | |
| ACACCAACAAAAACAGCAAA+AGG | - | chr3.2:67999762-67999781 | None:intergenic | 35.0% | |
| ACATCGAGAAAAGGAAATGA+TGG | + | chr3.2:67999147-67999166 | MS.gene022416:CDS | 35.0% | |
| AGTATACACGCTTTCTTTGA+TGG | + | chr3.2:68000239-68000258 | MS.gene022416:CDS | 35.0% | |
| ATCGAGAAAAGGAAATGATG+GGG | + | chr3.2:67999149-67999168 | MS.gene022416:CDS | 35.0% | |
| CAATCAACATTACTTGGATG+TGG | + | chr3.2:67999795-67999814 | MS.gene022416:CDS | 35.0% | |
| CAATCTCTTGTTAAAGATGC+AGG | + | chr3.2:67999459-67999478 | MS.gene022416:CDS | 35.0% | |
| CATCGAGAAAAGGAAATGAT+GGG | + | chr3.2:67999148-67999167 | MS.gene022416:CDS | 35.0% | |
| CATGGTCAATCAACATTACT+TGG | + | chr3.2:67999789-67999808 | MS.gene022416:CDS | 35.0% | |
| GTTCAAGGCTAACAAGAATA+TGG | + | chr3.2:67999371-67999390 | MS.gene022416:CDS | 35.0% | |
| TATTGTGACTGACCAATGTA+AGG | + | chr3.2:67999902-67999921 | MS.gene022416:CDS | 35.0% | |
| TGTGGTAGTATTCATGATGA+AGG | + | chr3.2:67998982-67999001 | MS.gene022416:CDS | 35.0% | |
| ! | CAACAAAATCATTGGTTGAC+TGG | + | chr3.2:68000131-68000150 | MS.gene022416:CDS | 35.0% |
| ! | CAAGTAATGTTGATTGACCA+TGG | - | chr3.2:67999791-67999810 | None:intergenic | 35.0% |
| ! | CATTTTGCATTGCCTTACAT+TGG | - | chr3.2:67999917-67999936 | None:intergenic | 35.0% |
| ! | TGGATGACGATTTTCATGTA+AGG | + | chr3.2:67999637-67999656 | MS.gene022416:CDS | 35.0% |
| !! | CTTTGAGAAAGGGTTTTGAT+TGG | + | chr3.2:67999115-67999134 | MS.gene022416:CDS | 35.0% |
| !! | TGTATCAAGTTGAAAGCAGA+TGG | + | chr3.2:67999282-67999301 | MS.gene022416:CDS | 35.0% |
| !!! | ATGCCTTTTGCTGTTTTTGT+TGG | + | chr3.2:67999756-67999775 | MS.gene022416:CDS | 35.0% |
| ATTGAAGACACGTCCAACAA+TGG | + | chr3.2:67999236-67999255 | MS.gene022416:CDS | 40.0% | |
| CTGGTATGATGAGAATGGTT+AGG | - | chr3.2:67999333-67999352 | None:intergenic | 40.0% | |
| GCAATTGGAAAAGAAGGTGA+TGG | + | chr3.2:67999546-67999565 | MS.gene022416:CDS | 40.0% | |
| GCGGGTATGGTGATTATAAA+AGG | + | chr3.2:68000015-68000034 | MS.gene022416:CDS | 40.0% | |
| TACAAAGGCAAGGTTGTTCA+AGG | + | chr3.2:67999356-67999375 | MS.gene022416:CDS | 40.0% | |
| TCTCTTGTTAAAGATGCAGG+CGG | + | chr3.2:67999462-67999481 | MS.gene022416:CDS | 40.0% | |
| TGAACAACCTTGCCTTTGTA+GGG | - | chr3.2:67999356-67999375 | None:intergenic | 40.0% | |
| TTCTTGCATGCACAAGAGAT+CGG | + | chr3.2:67999187-67999206 | MS.gene022416:CDS | 40.0% | |
| TTGAACAACCTTGCCTTTGT+AGG | - | chr3.2:67999357-67999376 | None:intergenic | 40.0% | |
| TTGAAGACACGTCCAACAAT+GGG | + | chr3.2:67999237-67999256 | MS.gene022416:CDS | 40.0% | |
| TTTGTTGGTGTGAATCACCA+TGG | + | chr3.2:67999771-67999790 | MS.gene022416:CDS | 40.0% | |
| ! | AGGGCTGCTTATGAGTATTT+TGG | + | chr3.2:67999687-67999706 | MS.gene022416:CDS | 40.0% |
| ! | GGATAGTCCAAATGCTTTTG+TGG | + | chr3.2:67998957-67998976 | MS.gene022416:CDS | 40.0% |
| ! | TCGTTGAGTTGTTGACATAC+CGG | - | chr3.2:68000213-68000232 | None:intergenic | 40.0% |
| !! | AGTTGAAAGCAGATGGATTG+TGG | + | chr3.2:67999289-67999308 | MS.gene022416:CDS | 40.0% |
| !! | CCAAATGCTTTTGTGGATTG+TGG | + | chr3.2:67998964-67998983 | MS.gene022416:CDS | 40.0% |
| !! | CCACAATCCACAAAAGCATT+TGG | - | chr3.2:67998967-67998986 | None:intergenic | 40.0% |
| !! | GGACAACTTTTTCCCATTGT+TGG | - | chr3.2:67999252-67999271 | None:intergenic | 40.0% |
| AACAAGGAACGACGTGCAAT+TGG | + | chr3.2:67999531-67999550 | MS.gene022416:CDS | 45.0% | |
| CGACGTGCAATTGGAAAAGA+AGG | + | chr3.2:67999540-67999559 | MS.gene022416:CDS | 45.0% | |
| CTCTTGTTAAAGATGCAGGC+GGG | + | chr3.2:67999463-67999482 | MS.gene022416:CDS | 45.0% | |
| GGCAATGCAAAATGCAATCG+AGG | + | chr3.2:67999923-67999942 | MS.gene022416:CDS | 45.0% | |
| GGTCAGTCACAATACCAACA+GGG | - | chr3.2:67999896-67999915 | None:intergenic | 45.0% | |
| GTCAGTCACAATACCAACAG+GGG | - | chr3.2:67999895-67999914 | None:intergenic | 45.0% | |
| TATGCCATAAACACCACCTG+TGG | - | chr3.2:67999968-67999987 | None:intergenic | 45.0% | |
| TCAGTCACAATACCAACAGG+GGG | - | chr3.2:67999894-67999913 | None:intergenic | 45.0% | |
| TCATCATACCAGCCCTACAA+AGG | + | chr3.2:67999341-67999360 | MS.gene022416:CDS | 45.0% | |
| TCATGGCTTCGTTGTATGCT+AGG | + | chr3.2:67999864-67999883 | MS.gene022416:CDS | 45.0% | |
| TCTTGCATGCACAAGAGATC+GGG | + | chr3.2:67999188-67999207 | MS.gene022416:CDS | 45.0% | |
| TGGTCAGTCACAATACCAAC+AGG | - | chr3.2:67999897-67999916 | None:intergenic | 45.0% | |
| TTGGGCTGATGCAAGAAGTA+GGG | + | chr3.2:67999668-67999687 | MS.gene022416:CDS | 45.0% | |
| TTTGGGCTGATGCAAGAAGT+AGG | + | chr3.2:67999667-67999686 | MS.gene022416:CDS | 45.0% | |
| ! | GAGAAAAGGAAATGATGGGG+AGG | + | chr3.2:67999152-67999171 | MS.gene022416:CDS | 45.0% |
| ! | TAGGGCTGGTATGATGAGAA+TGG | - | chr3.2:67999338-67999357 | None:intergenic | 45.0% |
| ! | TCAATGATGATGCAGGTGTG+AGG | + | chr3.2:67999421-67999440 | MS.gene022416:CDS | 45.0% |
| ! | TGGAAAAGAAGGTGATGGCA+AGG | + | chr3.2:67999551-67999570 | MS.gene022416:CDS | 45.0% |
| ATACCAGCCCTACAAAGGCA+AGG | + | chr3.2:67999346-67999365 | MS.gene022416:CDS | 50.0% | |
| GCTGAAAAACTCAGCGGGTA+TGG | + | chr3.2:68000002-68000021 | MS.gene022416:CDS | 50.0% | |
| ! | CTTGGATGTGGGTTGCTATC+AGG | + | chr3.2:67999807-67999826 | MS.gene022416:CDS | 50.0% |
| ! | TTTTCCCTACAACTCGCCAC+AGG | + | chr3.2:67999949-67999968 | MS.gene022416:CDS | 50.0% |
| ACCACCTGTGGCGAGTTGTA+GGG | - | chr3.2:67999956-67999975 | None:intergenic | 55.0% | |
| ATGCTAGGTAAGCCCCCTGT+TGG | + | chr3.2:67999879-67999898 | MS.gene022416:CDS | 55.0% | |
| CAACCTTGCCTTTGTAGGGC+TGG | - | chr3.2:67999352-67999371 | None:intergenic | 55.0% | |
| CTCGCCACAGGTGGTGTTTA+TGG | + | chr3.2:67999961-67999980 | MS.gene022416:CDS | 55.0% | |
| CACCACCTGTGGCGAGTTGT+AGG | - | chr3.2:67999957-67999976 | None:intergenic | 60.0% | |
| TCCCTACAACTCGCCACAGG+TGG | + | chr3.2:67999952-67999971 | MS.gene022416:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 67998955 | 68000334 | 67998955 | ID=MS.gene022416 |
| chr3.2 | mRNA | 67998955 | 68000334 | 67998955 | ID=MS.gene022416.t1;Parent=MS.gene022416 |
| chr3.2 | exon | 67998955 | 68000334 | 67998955 | ID=MS.gene022416.t1.exon1;Parent=MS.gene022416.t1 |
| chr3.2 | CDS | 67998955 | 68000334 | 67998955 | ID=cds.MS.gene022416.t1;Parent=MS.gene022416.t1 |
| Gene Sequence |
| Protein sequence |
