Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022528.t1 | XP_003626678.1 | 71.8 | 301 | 59 | 5 | 5 | 303 | 3 | 279 | 2.90E-108 | 401.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022528.t1 | K4BIZ9 | 40.2 | 179 | 86 | 5 | 8 | 176 | 14 | 181 | 2.2e-19 | 97.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022528.t1 | G7LAR2 | 71.8 | 301 | 59 | 5 | 5 | 303 | 3 | 279 | 2.1e-108 | 401.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene022528.t1 | TF | WRKY |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022528.t1 | MTR_8g005750 | 81.063 | 301 | 31 | 5 | 5 | 303 | 3 | 279 | 4.91e-164 | 457 |
MS.gene022528.t1 | MTR_8g032510 | 47.727 | 308 | 119 | 10 | 6 | 301 | 7 | 284 | 3.81e-73 | 227 |
MS.gene022528.t1 | MTR_0002s1250 | 49.438 | 267 | 99 | 9 | 1 | 255 | 1 | 243 | 1.13e-69 | 217 |
MS.gene022528.t1 | MTR_7g073380 | 44.068 | 295 | 137 | 9 | 4 | 288 | 12 | 288 | 4.52e-62 | 199 |
MS.gene022528.t1 | MTR_7g073430 | 40.468 | 299 | 132 | 8 | 4 | 288 | 11 | 277 | 2.84e-61 | 196 |
MS.gene022528.t1 | MTR_2g075690 | 41.364 | 220 | 102 | 6 | 9 | 204 | 18 | 234 | 6.03e-44 | 152 |
MS.gene022528.t1 | MTR_2g075700 | 39.331 | 239 | 98 | 7 | 2 | 204 | 10 | 237 | 3.12e-38 | 137 |
MS.gene022528.t1 | MTR_2g075680 | 42.152 | 223 | 97 | 7 | 6 | 197 | 14 | 235 | 1.09e-36 | 133 |
MS.gene022528.t1 | MTR_5g067700 | 37.245 | 196 | 102 | 4 | 8 | 203 | 15 | 189 | 7.63e-34 | 124 |
MS.gene022528.t1 | MTR_2g075610 | 52.727 | 110 | 51 | 1 | 90 | 199 | 8 | 116 | 1.79e-32 | 119 |
MS.gene022528.t1 | MTR_3g093830 | 45.238 | 168 | 79 | 6 | 13 | 171 | 23 | 186 | 3.21e-32 | 121 |
MS.gene022528.t1 | MTR_2g075750 | 52.830 | 106 | 40 | 2 | 97 | 197 | 13 | 113 | 6.18e-31 | 114 |
MS.gene022528.t1 | MTR_7g117200 | 38.068 | 176 | 94 | 5 | 4 | 171 | 9 | 177 | 2.20e-27 | 109 |
MS.gene022528.t1 | MTR_3g090860 | 32.057 | 209 | 107 | 4 | 1 | 181 | 1 | 202 | 8.89e-25 | 102 |
MS.gene022528.t1 | MTR_8g099350 | 31.959 | 194 | 105 | 4 | 8 | 180 | 13 | 200 | 4.66e-22 | 95.1 |
MS.gene022528.t1 | MTR_8g027860 | 48.837 | 86 | 37 | 1 | 93 | 171 | 110 | 195 | 3.03e-20 | 89.7 |
MS.gene022528.t1 | MTR_5g067680 | 53.731 | 67 | 31 | 0 | 107 | 173 | 197 | 263 | 2.72e-18 | 84.3 |
MS.gene022528.t1 | MTR_7g028415 | 54.237 | 59 | 24 | 1 | 112 | 170 | 93 | 148 | 3.55e-14 | 69.7 |
MS.gene022528.t1 | MTR_7g028710 | 54.237 | 59 | 24 | 1 | 112 | 170 | 93 | 148 | 3.55e-14 | 69.7 |
MS.gene022528.t1 | MTR_7g079010 | 53.125 | 64 | 25 | 2 | 112 | 173 | 141 | 201 | 5.09e-14 | 70.1 |
MS.gene022528.t1 | MTR_8g028565 | 44.872 | 78 | 39 | 2 | 95 | 170 | 136 | 211 | 4.38e-13 | 69.3 |
MS.gene022528.t1 | MTR_8g092140 | 47.458 | 59 | 28 | 1 | 112 | 170 | 160 | 215 | 4.72e-13 | 67.8 |
MS.gene022528.t1 | MTR_5g091390 | 50.000 | 58 | 26 | 1 | 112 | 169 | 157 | 211 | 1.05e-12 | 67.8 |
MS.gene022528.t1 | MTR_3g095080 | 47.458 | 59 | 28 | 1 | 112 | 170 | 168 | 223 | 1.69e-12 | 66.2 |
MS.gene022528.t1 | MTR_3g095080 | 47.458 | 59 | 28 | 1 | 112 | 170 | 144 | 199 | 2.20e-12 | 65.9 |
MS.gene022528.t1 | MTR_7g062220 | 55.172 | 58 | 23 | 1 | 112 | 169 | 124 | 178 | 2.53e-12 | 66.6 |
MS.gene022528.t1 | MTR_4g094588 | 51.724 | 58 | 25 | 1 | 112 | 169 | 178 | 232 | 3.08e-12 | 66.6 |
MS.gene022528.t1 | MTR_5g073620 | 34.483 | 116 | 68 | 3 | 110 | 221 | 670 | 781 | 5.97e-12 | 66.6 |
MS.gene022528.t1 | MTR_5g043880 | 48.276 | 58 | 27 | 1 | 112 | 169 | 124 | 178 | 7.53e-12 | 65.1 |
MS.gene022528.t1 | MTR_8g007270 | 50.000 | 58 | 26 | 1 | 112 | 169 | 154 | 208 | 1.06e-11 | 63.9 |
MS.gene022528.t1 | MTR_8g096730 | 36.047 | 86 | 50 | 2 | 84 | 169 | 44 | 124 | 6.23e-11 | 60.1 |
MS.gene022528.t1 | MTR_1g086790 | 47.458 | 59 | 28 | 1 | 112 | 170 | 158 | 213 | 6.72e-11 | 62.4 |
MS.gene022528.t1 | MTR_7g079040 | 35.106 | 94 | 59 | 1 | 76 | 169 | 118 | 209 | 8.84e-11 | 62.4 |
MS.gene022528.t1 | MTR_2g033820 | 47.458 | 59 | 28 | 1 | 112 | 170 | 203 | 258 | 9.19e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022528.t1 | AT3G56400 | 37.500 | 184 | 91 | 6 | 6 | 175 | 10 | 183 | 2.74e-31 | 119 |
MS.gene022528.t1 | AT1G66550 | 32.683 | 205 | 109 | 6 | 6 | 202 | 8 | 191 | 8.34e-27 | 105 |
MS.gene022528.t1 | AT1G66600 | 34.536 | 194 | 107 | 4 | 6 | 198 | 8 | 182 | 1.21e-26 | 105 |
MS.gene022528.t1 | AT2G46400 | 35.079 | 191 | 113 | 4 | 9 | 199 | 6 | 185 | 4.06e-26 | 105 |
MS.gene022528.t1 | AT1G66550 | 32.212 | 208 | 101 | 5 | 6 | 202 | 8 | 186 | 6.27e-26 | 103 |
MS.gene022528.t1 | AT1G66560 | 36.224 | 196 | 99 | 6 | 7 | 198 | 9 | 182 | 2.06e-25 | 102 |
MS.gene022528.t1 | AT5G22570 | 32.673 | 202 | 115 | 5 | 5 | 196 | 8 | 198 | 5.44e-25 | 102 |
MS.gene022528.t1 | AT4G11070 | 30.435 | 207 | 99 | 4 | 3 | 174 | 7 | 203 | 2.03e-22 | 95.5 |
MS.gene022528.t1 | AT5G01900 | 36.628 | 172 | 98 | 4 | 4 | 171 | 5 | 169 | 2.52e-22 | 94.4 |
MS.gene022528.t1 | AT2G40750 | 29.614 | 233 | 129 | 5 | 6 | 206 | 14 | 243 | 4.18e-22 | 95.1 |
MS.gene022528.t1 | AT2G40740 | 36.538 | 156 | 55 | 4 | 89 | 231 | 137 | 261 | 1.76e-20 | 89.7 |
MS.gene022528.t1 | AT1G80590 | 30.256 | 195 | 103 | 5 | 6 | 200 | 8 | 169 | 2.40e-20 | 88.2 |
MS.gene022528.t1 | AT2G40740 | 36.538 | 156 | 55 | 4 | 89 | 231 | 146 | 270 | 2.48e-20 | 89.4 |
MS.gene022528.t1 | AT4G11070 | 32.961 | 179 | 99 | 4 | 3 | 174 | 7 | 171 | 6.08e-20 | 88.2 |
MS.gene022528.t1 | AT5G24110 | 31.461 | 178 | 105 | 4 | 4 | 177 | 14 | 178 | 1.37e-18 | 84.7 |
MS.gene022528.t1 | AT4G23810 | 46.591 | 88 | 40 | 1 | 93 | 173 | 132 | 219 | 2.45e-18 | 84.3 |
MS.gene022528.t1 | AT2G46130 | 51.724 | 58 | 25 | 1 | 112 | 169 | 30 | 84 | 3.22e-13 | 65.5 |
MS.gene022528.t1 | AT1G64000 | 45.946 | 74 | 32 | 3 | 112 | 183 | 114 | 181 | 5.08e-13 | 67.0 |
MS.gene022528.t1 | AT4G01250 | 31.818 | 132 | 87 | 2 | 38 | 169 | 55 | 183 | 7.33e-13 | 68.2 |
MS.gene022528.t1 | AT5G49520 | 50.847 | 59 | 26 | 1 | 112 | 170 | 221 | 276 | 2.60e-12 | 67.4 |
MS.gene022528.t1 | AT1G69310 | 48.276 | 58 | 27 | 1 | 112 | 169 | 147 | 201 | 2.89e-12 | 66.2 |
MS.gene022528.t1 | AT1G69310 | 48.276 | 58 | 27 | 1 | 112 | 169 | 147 | 201 | 2.89e-12 | 66.2 |
MS.gene022528.t1 | AT1G69310 | 48.276 | 58 | 27 | 1 | 112 | 169 | 147 | 201 | 2.89e-12 | 66.2 |
MS.gene022528.t1 | AT5G46350 | 40.909 | 88 | 44 | 3 | 112 | 194 | 183 | 267 | 4.65e-12 | 66.2 |
MS.gene022528.t1 | AT2G44745 | 50.000 | 58 | 26 | 1 | 112 | 169 | 145 | 199 | 6.02e-12 | 64.3 |
MS.gene022528.t1 | AT5G41570 | 46.875 | 64 | 29 | 2 | 112 | 173 | 98 | 158 | 6.65e-12 | 63.5 |
MS.gene022528.t1 | AT4G39410 | 46.552 | 58 | 28 | 1 | 112 | 169 | 223 | 277 | 7.36e-12 | 65.5 |
MS.gene022528.t1 | AT1G29860 | 39.326 | 89 | 46 | 2 | 112 | 195 | 136 | 221 | 8.98e-12 | 64.7 |
MS.gene022528.t1 | AT4G18170 | 41.667 | 96 | 49 | 3 | 76 | 169 | 136 | 226 | 1.07e-11 | 65.1 |
MS.gene022528.t1 | AT5G13080 | 49.153 | 59 | 27 | 1 | 112 | 170 | 67 | 122 | 1.93e-11 | 61.6 |
MS.gene022528.t1 | AT5G45260 | 43.038 | 79 | 41 | 3 | 95 | 169 | 1187 | 1265 | 4.47e-11 | 64.3 |
MS.gene022528.t1 | AT5G52830 | 42.105 | 76 | 42 | 1 | 95 | 170 | 148 | 221 | 4.83e-11 | 63.2 |
Find 59 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATACACACCTTGAGTATT+TGG | 0.203884 | 8.4:+81196780 | None:intergenic |
GAAATAGAGTTATCTAAAAT+TGG | 0.244498 | 8.4:+81196331 | None:intergenic |
ACAAGATGTTGTGCAAATAA+TGG | 0.269160 | 8.4:+81197380 | None:intergenic |
TTGAATTCTTTGCACTTGTT+TGG | 0.303242 | 8.4:+81196630 | None:intergenic |
CAAGATGTTGTGCAAATAAT+GGG | 0.321057 | 8.4:+81197381 | None:intergenic |
TTTGCACTTGTTTGGTTGCT+AGG | 0.328601 | 8.4:+81196638 | None:intergenic |
TGATGTCGACGATGATAAAA+AGG | 0.331109 | 8.4:+81196450 | None:intergenic |
CAAGGAGAACTCACCTTCCT+TGG | 0.368416 | 8.4:-81196377 | MS.gene022528:CDS |
TTTGATGATGTTTGTTCAAA+AGG | 0.368943 | 8.4:+81197321 | None:intergenic |
ACAAGTGTGGTGGCCGTAAT+AGG | 0.383562 | 8.4:+81196582 | None:intergenic |
ACCTTGAGTATTTGGAATTG+AGG | 0.393271 | 8.4:+81196788 | None:intergenic |
GAGTTATCTAAAATTGGTTC+AGG | 0.405651 | 8.4:+81196337 | None:intergenic |
CAATCTTGTTCGGTTGGAGT+TGG | 0.410695 | 8.4:+81196475 | None:intergenic |
CAACAGATGATGGGCATGAA+TGG | 0.421200 | 8.4:-81196834 | MS.gene022528:CDS |
TTGTATAAGACCACCTATTA+CGG | 0.432341 | 8.4:-81196595 | MS.gene022528:CDS |
GTTGTTAAAGCTAAGCAATA+TGG | 0.446307 | 8.4:+81196504 | None:intergenic |
GGGCATGAATGGAGAAAGTA+TGG | 0.453906 | 8.4:-81196823 | MS.gene022528:CDS |
TCAGAAAGACCAACAGATGA+TGG | 0.460980 | 8.4:-81196844 | MS.gene022528:CDS |
AATCTTGTTCGGTTGGAGTT+GGG | 0.467320 | 8.4:+81196476 | None:intergenic |
AAGGAACAATCTTGTTCGGT+TGG | 0.485790 | 8.4:+81196469 | None:intergenic |
TTTGAACAAACATCATCAAA+GGG | 0.495098 | 8.4:-81197318 | MS.gene022528:CDS |
TTTAACTATTAAATCTGAAG+AGG | 0.496351 | 8.4:-81197282 | MS.gene022528:CDS |
CATTCATGCCCATCATCTGT+TGG | 0.504398 | 8.4:+81196835 | None:intergenic |
TGATAGAGATGAGGCAATGA+AGG | 0.505201 | 8.4:-81197483 | MS.gene022528:CDS |
CAATTGAATCTGATGATCAC+AGG | 0.507819 | 8.4:-81196270 | MS.gene022528:CDS |
AGTATTATCATGAGGAGAAG+TGG | 0.509303 | 8.4:+81196534 | None:intergenic |
AGGGATATGATGATAATGTA+TGG | 0.518222 | 8.4:-81196250 | MS.gene022528:CDS |
CTAGAGGATCTCACAAAAGA+AGG | 0.538260 | 8.4:-81197220 | MS.gene022528:intron |
GATGTTTGTTCAAAAGGAAG+AGG | 0.548943 | 8.4:+81197327 | None:intergenic |
GTGAGATCCTCTAGCACCAC+GGG | 0.549156 | 8.4:+81197229 | None:intergenic |
ATATATGCAGGGACTACTAC+AGG | 0.552760 | 8.4:-81196687 | MS.gene022528:intron |
TAGATAACTCTATTTCTACA+AGG | 0.554534 | 8.4:-81196324 | MS.gene022528:CDS |
TAATAGGTGGTCTTATACAA+GGG | 0.559513 | 8.4:+81196598 | None:intergenic |
TCCTCAATTCCAAATACTCA+AGG | 0.566315 | 8.4:-81196789 | MS.gene022528:intron |
GTATTATCATGAGGAGAAGT+GGG | 0.567061 | 8.4:+81196535 | None:intergenic |
TTGTTCGGTTGGAGTTGGGA+AGG | 0.567594 | 8.4:+81196480 | None:intergenic |
CAGAAAGACCAACAGATGAT+GGG | 0.573763 | 8.4:-81196843 | MS.gene022528:CDS |
ATGTTTGTTCAAAAGGAAGA+GGG | 0.576811 | 8.4:+81197328 | None:intergenic |
GTAATAGGTGGTCTTATACA+AGG | 0.578341 | 8.4:+81196597 | None:intergenic |
AGTTCCACCCGTGGTGCTAG+AGG | 0.580528 | 8.4:-81197236 | MS.gene022528:CDS |
AGAGAGCAGGTATTCATCCA+AGG | 0.581141 | 8.4:+81196360 | None:intergenic |
GCAATATTCCACTGAATGTG+AGG | 0.603090 | 8.4:+81196399 | None:intergenic |
AGCAGGTATTCATCCAAGGA+AGG | 0.605278 | 8.4:+81196364 | None:intergenic |
GAAAGCCATGAAAAGTGTGA+AGG | 0.611078 | 8.4:+81196191 | None:intergenic |
ACATTCAGTGGAATATTGCA+AGG | 0.616091 | 8.4:-81196395 | MS.gene022528:CDS |
GTTAAAGCTAAGCAATATGG+AGG | 0.618068 | 8.4:+81196507 | None:intergenic |
GAGGAAGTAGTATTATCATG+AGG | 0.627255 | 8.4:+81196526 | None:intergenic |
AAATTGGTTCAGGAGAGAGC+AGG | 0.628355 | 8.4:+81196347 | None:intergenic |
GCAATGAAGGAGCTTGTGAG+AGG | 0.633274 | 8.4:-81197470 | MS.gene022528:CDS |
CAATGAAGGAGCTTGTGAGA+GGG | 0.635141 | 8.4:-81197469 | MS.gene022528:CDS |
TGTGAGATCCTCTAGCACCA+CGG | 0.642464 | 8.4:+81197228 | None:intergenic |
TACTGTCTTTGTTACAAGTG+TGG | 0.643734 | 8.4:+81196569 | None:intergenic |
AGATCCTCTAGCACCACGGG+TGG | 0.645633 | 8.4:+81197232 | None:intergenic |
AGTGTGGTGGCCGTAATAGG+TGG | 0.645916 | 8.4:+81196585 | None:intergenic |
AAATATGGATGATAGAGATG+AGG | 0.650081 | 8.4:-81197492 | None:intergenic |
AATTGAATCTGATGATCACA+GGG | 0.653639 | 8.4:-81196269 | MS.gene022528:CDS |
TGTCTTTGTTACAAGTGTGG+TGG | 0.672952 | 8.4:+81196572 | None:intergenic |
TAGGTGGTCTTATACAAGGG+AGG | 0.682870 | 8.4:+81196601 | None:intergenic |
TACAAGACTAGTTCCACCCG+TGG | 0.693459 | 8.4:-81197245 | MS.gene022528:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATATATATATATA+TGG | - | chr8.4:81196535-81196554 | MS.gene022528:CDS | 0.0% |
!! | TATATATATTAATAATATAT+TGG | + | chr8.4:81196523-81196542 | None:intergenic | 0.0% |
!! | TATATATTAATTCAATTCAT+TGG | + | chr8.4:81196969-81196988 | None:intergenic | 10.0% |
!! | AATTGAATTAATATATATGC+AGG | - | chr8.4:81196972-81196991 | MS.gene022528:intron | 15.0% |
!! | ATTGAATTAATATATATGCA+GGG | - | chr8.4:81196973-81196992 | MS.gene022528:intron | 15.0% |
!! | TATATATAGATGAATTAAGT+TGG | + | chr8.4:81196941-81196960 | None:intergenic | 15.0% |
!! | TTTAACTATTAAATCTGAAG+AGG | - | chr8.4:81196389-81196408 | MS.gene022528:CDS | 20.0% |
!!! | GAAATAGAGTTATCTAAAAT+TGG | + | chr8.4:81197343-81197362 | None:intergenic | 20.0% |
! | TAAAAAGGAACAATCTTGTT+CGG | + | chr8.4:81197209-81197228 | None:intergenic | 25.0% |
! | TTTGAACAAACATCATCAAA+GGG | - | chr8.4:81196353-81196372 | MS.gene022528:CDS | 25.0% |
!! | GAACATTTTCTATAGAATCA+TGG | - | chr8.4:81196709-81196728 | MS.gene022528:intron | 25.0% |
!! | TAGAATCATGGTTAAGTTTT+TGG | - | chr8.4:81196721-81196740 | MS.gene022528:intron | 25.0% |
!! | TTTTGAACAAACATCATCAA+AGG | - | chr8.4:81196352-81196371 | MS.gene022528:CDS | 25.0% |
!!! | TAGATAACTCTATTTCTACA+AGG | - | chr8.4:81197347-81197366 | MS.gene022528:CDS | 25.0% |
!!! | TTTGATGATGTTTGTTCAAA+AGG | + | chr8.4:81196353-81196372 | None:intergenic | 25.0% |
AACATGAAATTCTCATTGTG+TGG | - | chr8.4:81196629-81196648 | MS.gene022528:CDS | 30.0% | |
AATTGAATCTGATGATCACA+GGG | - | chr8.4:81197402-81197421 | MS.gene022528:CDS | 30.0% | |
ACAAGATGTTGTGCAAATAA+TGG | + | chr8.4:81196294-81196313 | None:intergenic | 30.0% | |
ATATACACACCTTGAGTATT+TGG | + | chr8.4:81196894-81196913 | None:intergenic | 30.0% | |
ATGTTTGTTCAAAAGGAAGA+GGG | + | chr8.4:81196346-81196365 | None:intergenic | 30.0% | |
CAAGATGTTGTGCAAATAAT+GGG | + | chr8.4:81196293-81196312 | None:intergenic | 30.0% | |
GTTGTTAAAGCTAAGCAATA+TGG | + | chr8.4:81197170-81197189 | None:intergenic | 30.0% | |
TTGAATTCTTTGCACTTGTT+TGG | + | chr8.4:81197044-81197063 | None:intergenic | 30.0% | |
TTGTATAAGACCACCTATTA+CGG | - | chr8.4:81197076-81197095 | MS.gene022528:intron | 30.0% | |
! | AGGGATATGATGATAATGTA+TGG | - | chr8.4:81197421-81197440 | MS.gene022528:CDS | 30.0% |
! | GAGTTATCTAAAATTGGTTC+AGG | + | chr8.4:81197337-81197356 | None:intergenic | 30.0% |
!! | TAATAGGTGGTCTTATACAA+GGG | + | chr8.4:81197076-81197095 | None:intergenic | 30.0% |
!! | TTTTAATTCCTCACATTCAG+TGG | - | chr8.4:81197264-81197283 | MS.gene022528:CDS | 30.0% |
!!! | CTGTTTTTAGAGTGTTAACA+AGG | + | chr8.4:81196663-81196682 | None:intergenic | 30.0% |
AAAAACTACAGAAACGTGTG+AGG | - | chr8.4:81196799-81196818 | MS.gene022528:CDS | 35.0% | |
ACATTCAGTGGAATATTGCA+AGG | - | chr8.4:81197276-81197295 | MS.gene022528:CDS | 35.0% | |
AGTATTATCATGAGGAGAAG+TGG | + | chr8.4:81197140-81197159 | None:intergenic | 35.0% | |
CAATTGAATCTGATGATCAC+AGG | - | chr8.4:81197401-81197420 | MS.gene022528:CDS | 35.0% | |
GAGGAAGTAGTATTATCATG+AGG | + | chr8.4:81197148-81197167 | None:intergenic | 35.0% | |
GATGTTTGTTCAAAAGGAAG+AGG | + | chr8.4:81196347-81196366 | None:intergenic | 35.0% | |
GTATTATCATGAGGAGAAGT+GGG | + | chr8.4:81197139-81197158 | None:intergenic | 35.0% | |
GTTAAAGCTAAGCAATATGG+AGG | + | chr8.4:81197167-81197186 | None:intergenic | 35.0% | |
TACTGTCTTTGTTACAAGTG+TGG | + | chr8.4:81197105-81197124 | None:intergenic | 35.0% | |
TCCTCAATTCCAAATACTCA+AGG | - | chr8.4:81196882-81196901 | MS.gene022528:intron | 35.0% | |
TGATGTCGACGATGATAAAA+AGG | + | chr8.4:81197224-81197243 | None:intergenic | 35.0% | |
! | ACCTTGAGTATTTGGAATTG+AGG | + | chr8.4:81196886-81196905 | None:intergenic | 35.0% |
! | GATTTCCTTCACACTTTTCA+TGG | - | chr8.4:81197475-81197494 | MS.gene022528:CDS | 35.0% |
!! | GTAATAGGTGGTCTTATACA+AGG | + | chr8.4:81197077-81197096 | None:intergenic | 35.0% |
!! | TCATGGTTAAGTTTTTGGAG+TGG | - | chr8.4:81196726-81196745 | MS.gene022528:intron | 35.0% |
AAGGAACAATCTTGTTCGGT+TGG | + | chr8.4:81197205-81197224 | None:intergenic | 40.0% | |
AATCTTGTTCGGTTGGAGTT+GGG | + | chr8.4:81197198-81197217 | None:intergenic | 40.0% | |
ATATATGCAGGGACTACTAC+AGG | - | chr8.4:81196984-81197003 | MS.gene022528:intron | 40.0% | |
CAGAAAGACCAACAGATGAT+GGG | - | chr8.4:81196828-81196847 | MS.gene022528:CDS | 40.0% | |
CTAGAGGATCTCACAAAAGA+AGG | - | chr8.4:81196451-81196470 | MS.gene022528:CDS | 40.0% | |
GCAATATTCCACTGAATGTG+AGG | + | chr8.4:81197275-81197294 | None:intergenic | 40.0% | |
TCAGAAAGACCAACAGATGA+TGG | - | chr8.4:81196827-81196846 | MS.gene022528:CDS | 40.0% | |
TGATAGAGATGAGGCAATGA+AGG | - | chr8.4:81196188-81196207 | MS.gene022528:CDS | 40.0% | |
TGTCTTTGTTACAAGTGTGG+TGG | + | chr8.4:81197102-81197121 | None:intergenic | 40.0% | |
TTTGCACTTGTTTGGTTGCT+AGG | + | chr8.4:81197036-81197055 | None:intergenic | 40.0% | |
! | AGTCATGTTGTTTGCTAGCT+AGG | - | chr8.4:81196681-81196700 | MS.gene022528:intron | 40.0% |
! | GAAAGCCATGAAAAGTGTGA+AGG | + | chr8.4:81197483-81197502 | None:intergenic | 40.0% |
AGAGAGCAGGTATTCATCCA+AGG | + | chr8.4:81197314-81197333 | None:intergenic | 45.0% | |
AGCAGGTATTCATCCAAGGA+AGG | + | chr8.4:81197310-81197329 | None:intergenic | 45.0% | |
CAATCTTGTTCGGTTGGAGT+TGG | + | chr8.4:81197199-81197218 | None:intergenic | 45.0% | |
CAATGAAGGAGCTTGTGAGA+GGG | - | chr8.4:81196202-81196221 | MS.gene022528:CDS | 45.0% | |
CATTCATGCCCATCATCTGT+TGG | + | chr8.4:81196839-81196858 | None:intergenic | 45.0% | |
GGGCATGAATGGAGAAAGTA+TGG | - | chr8.4:81196848-81196867 | MS.gene022528:CDS | 45.0% | |
! | AAATTGGTTCAGGAGAGAGC+AGG | + | chr8.4:81197327-81197346 | None:intergenic | 45.0% |
!! | CAACAGATGATGGGCATGAA+TGG | - | chr8.4:81196837-81196856 | MS.gene022528:CDS | 45.0% |
!! | TAGGTGGTCTTATACAAGGG+AGG | + | chr8.4:81197073-81197092 | None:intergenic | 45.0% |
ACAAGTGTGGTGGCCGTAAT+AGG | + | chr8.4:81197092-81197111 | None:intergenic | 50.0% | |
CAAGGAGAACTCACCTTCCT+TGG | - | chr8.4:81197294-81197313 | MS.gene022528:CDS | 50.0% | |
GCAATGAAGGAGCTTGTGAG+AGG | - | chr8.4:81196201-81196220 | MS.gene022528:CDS | 50.0% | |
TGTGAGATCCTCTAGCACCA+CGG | + | chr8.4:81196446-81196465 | None:intergenic | 50.0% | |
TTGTTCGGTTGGAGTTGGGA+AGG | + | chr8.4:81197194-81197213 | None:intergenic | 50.0% | |
! | TACAAGACTAGTTCCACCCG+TGG | - | chr8.4:81196426-81196445 | MS.gene022528:CDS | 50.0% |
AGTGTGGTGGCCGTAATAGG+TGG | + | chr8.4:81197089-81197108 | None:intergenic | 55.0% | |
GTGAGATCCTCTAGCACCAC+GGG | + | chr8.4:81196445-81196464 | None:intergenic | 55.0% | |
AGATCCTCTAGCACCACGGG+TGG | + | chr8.4:81196442-81196461 | None:intergenic | 60.0% | |
! | AGTTCCACCCGTGGTGCTAG+AGG | - | chr8.4:81196435-81196454 | MS.gene022528:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 81196183 | 81197510 | 81196183 | ID=MS.gene022528 |
chr8.4 | mRNA | 81196183 | 81197510 | 81196183 | ID=MS.gene022528.t1;Parent=MS.gene022528 |
chr8.4 | exon | 81197221 | 81197510 | 81197221 | ID=MS.gene022528.t1.exon1;Parent=MS.gene022528.t1 |
chr8.4 | CDS | 81197221 | 81197510 | 81197221 | ID=cds.MS.gene022528.t1;Parent=MS.gene022528.t1 |
chr8.4 | exon | 81196790 | 81196894 | 81196790 | ID=MS.gene022528.t1.exon2;Parent=MS.gene022528.t1 |
chr8.4 | CDS | 81196790 | 81196894 | 81196790 | ID=cds.MS.gene022528.t1;Parent=MS.gene022528.t1 |
chr8.4 | exon | 81196183 | 81196699 | 81196183 | ID=MS.gene022528.t1.exon3;Parent=MS.gene022528.t1 |
chr8.4 | CDS | 81196183 | 81196699 | 81196183 | ID=cds.MS.gene022528.t1;Parent=MS.gene022528.t1 |
Gene Sequence |
Protein sequence |