Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022566.t1 | XP_013443746.1 | 95.3 | 403 | 19 | 0 | 1 | 403 | 162 | 564 | 7.80E-226 | 792.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022566.t1 | Q9M219 | 46.0 | 402 | 214 | 2 | 1 | 401 | 155 | 554 | 7.2e-103 | 375.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022566.t1 | A0A072TKN3 | 95.3 | 403 | 19 | 0 | 1 | 403 | 162 | 564 | 5.6e-226 | 792.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene022566.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022566.t1 | MTR_8g005155 | 95.285 | 403 | 19 | 0 | 1 | 403 | 162 | 564 | 0.0 | 792 |
| MS.gene022566.t1 | MTR_7g080620 | 56.404 | 406 | 168 | 3 | 1 | 400 | 179 | 581 | 5.40e-162 | 473 |
| MS.gene022566.t1 | MTR_5g084810 | 21.914 | 324 | 241 | 5 | 70 | 391 | 262 | 575 | 1.16e-21 | 97.4 |
| MS.gene022566.t1 | MTR_7g093000 | 22.364 | 313 | 221 | 7 | 88 | 393 | 264 | 561 | 4.27e-20 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022566.t1 | AT3G60400 | 46.020 | 402 | 214 | 2 | 1 | 401 | 155 | 554 | 2.23e-126 | 376 |
| MS.gene022566.t1 | AT4G19650 | 21.696 | 401 | 283 | 7 | 1 | 391 | 205 | 584 | 4.52e-22 | 99.0 |
| MS.gene022566.t1 | AT4G19650 | 21.696 | 401 | 283 | 7 | 1 | 391 | 188 | 567 | 5.64e-22 | 98.6 |
| MS.gene022566.t1 | AT5G06811 | 24.615 | 325 | 219 | 8 | 76 | 390 | 262 | 570 | 8.75e-21 | 94.7 |
| MS.gene022566.t1 | AT5G45113 | 24.088 | 274 | 194 | 5 | 120 | 391 | 145 | 406 | 1.05e-18 | 87.8 |
| MS.gene022566.t1 | AT5G06810 | 27.801 | 241 | 150 | 7 | 157 | 390 | 351 | 574 | 2.52e-18 | 87.4 |
Find 77 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTAGAGTTTCAGGATTT+TGG | 0.108976 | 8.4:-80362130 | None:intergenic |
| TTTGATTGCCTTCTACATTT+AGG | 0.135769 | 8.4:+80362053 | MS.gene022566:CDS |
| GGGACACTCCTTAGAGCTTT+TGG | 0.239993 | 8.4:+80362181 | MS.gene022566:CDS |
| TAATTTCCTATGTCAGGATA+TGG | 0.244795 | 8.4:+80362160 | MS.gene022566:CDS |
| TCATGAAGCTCGAAATTTAT+TGG | 0.254864 | 8.4:-80362408 | None:intergenic |
| AAACATTTGATTCTTGAGTA+TGG | 0.263491 | 8.4:+80361528 | MS.gene022566:CDS |
| TTGATTGCCTTCTACATTTA+GGG | 0.265986 | 8.4:+80362054 | MS.gene022566:CDS |
| GAAAAGTGGTTCTGAGATAA+AGG | 0.272746 | 8.4:+80361227 | MS.gene022566:CDS |
| TTAAATTTCATGCATACTAT+TGG | 0.285045 | 8.4:+80361957 | MS.gene022566:CDS |
| AATTGCTCAAACCAATGTTT+TGG | 0.304518 | 8.4:-80362380 | None:intergenic |
| CTTTGTTTGTTGAAAAGATA+TGG | 0.308280 | 8.4:+80361255 | MS.gene022566:CDS |
| CATGAAGCTCGAAATTTATT+GGG | 0.313412 | 8.4:-80362407 | None:intergenic |
| ACCTTTATCATGCTCTTCAT+TGG | 0.329479 | 8.4:-80361874 | None:intergenic |
| TTCATGCATACTATTGGCTT+TGG | 0.365567 | 8.4:+80361963 | MS.gene022566:CDS |
| CATGTGATTTAAGATATTCA+TGG | 0.366992 | 8.4:-80362000 | None:intergenic |
| CCCAATGAAGAGCATGATAA+AGG | 0.371844 | 8.4:+80361873 | MS.gene022566:CDS |
| ATCTGAACCTCGGCTTAATT+CGG | 0.372746 | 8.4:-80362241 | None:intergenic |
| GGAGTTGTTGAGTCTCAATT+TGG | 0.376264 | 8.4:+80361638 | MS.gene022566:CDS |
| ATAGGTTGCTTTCTGATTTG+AGG | 0.392968 | 8.4:+80361367 | MS.gene022566:CDS |
| CCTTTATCATGCTCTTCATT+GGG | 0.406357 | 8.4:-80361873 | None:intergenic |
| AAAGATTAATTTCCTATGTC+AGG | 0.406425 | 8.4:+80362154 | MS.gene022566:CDS |
| CCATATGTGGGCTTTAGAAA+AGG | 0.410319 | 8.4:+80362265 | MS.gene022566:CDS |
| GGGCTATGGGTTTACGTGAA+TGG | 0.411227 | 8.4:+80361790 | MS.gene022566:CDS |
| TTATCGATGATGAGGTTGAT+AGG | 0.413270 | 8.4:+80361349 | MS.gene022566:CDS |
| ATGTTTGGTATGATGTTTGT+AGG | 0.414620 | 8.4:+80361439 | MS.gene022566:CDS |
| AAAAGTGTCCAAAAGCTCTA+AGG | 0.419374 | 8.4:-80362189 | None:intergenic |
| ATTCAATCCCTAAATGTAGA+AGG | 0.419800 | 8.4:-80362061 | None:intergenic |
| AGTGATGGTAAGGGGAAGAT+AGG | 0.419950 | 8.4:+80361486 | MS.gene022566:CDS |
| CATATGTGGGCTTTAGAAAA+GGG | 0.423473 | 8.4:+80362266 | MS.gene022566:CDS |
| ACCCATAGCCCTCATCAGAT+TGG | 0.427036 | 8.4:-80361778 | None:intergenic |
| CCCAATCTGATGAGGGCTAT+GGG | 0.435992 | 8.4:+80361777 | MS.gene022566:CDS |
| TTTGTAATGTGCAAATTGTT+GGG | 0.448783 | 8.4:+80361280 | MS.gene022566:CDS |
| GATTTGGGAGGGTGTGTTGA+AGG | 0.450135 | 8.4:+80361408 | MS.gene022566:CDS |
| AATTTCCTATGTCAGGATAT+GGG | 0.450989 | 8.4:+80362161 | MS.gene022566:CDS |
| GGAATGGATTCTAAAGGTCT+TGG | 0.453391 | 8.4:+80361699 | MS.gene022566:CDS |
| TCGGTTGATTCTACAAGGTT+CGG | 0.454814 | 8.4:+80361617 | MS.gene022566:CDS |
| AAGAACTATGCTCATGCGTT+GGG | 0.457899 | 8.4:+80361732 | MS.gene022566:CDS |
| AAAAGTGGTTCTGAGATAAA+GGG | 0.465819 | 8.4:+80361228 | MS.gene022566:CDS |
| TTGAAGGGAATGTGGATGTT+TGG | 0.467882 | 8.4:+80361424 | MS.gene022566:CDS |
| AGAAGAGGAGTTGATTGAAA+AGG | 0.470802 | 8.4:+80361551 | MS.gene022566:CDS |
| CCCATAGCCCTCATCAGATT+GGG | 0.475310 | 8.4:-80361777 | None:intergenic |
| AAACTATTCCATTGCAAGCA+TGG | 0.484064 | 8.4:+80362301 | MS.gene022566:CDS |
| TCCCAATCTGATGAGGGCTA+TGG | 0.486736 | 8.4:+80361776 | MS.gene022566:CDS |
| GATTCTTGAGTATGGAGAAG+AGG | 0.500875 | 8.4:+80361536 | MS.gene022566:CDS |
| CGAGGTTCAGATTCCATATG+TGG | 0.503568 | 8.4:+80362252 | MS.gene022566:CDS |
| ATTTGGGAGGGTGTGTTGAA+GGG | 0.510382 | 8.4:+80361409 | MS.gene022566:CDS |
| GAAGAACTATGCTCATGCGT+TGG | 0.510932 | 8.4:+80361731 | MS.gene022566:CDS |
| TTATGATTTGAGTGATGGTA+AGG | 0.517430 | 8.4:+80361476 | MS.gene022566:CDS |
| AGGGTGTGTTGAAGGGAATG+TGG | 0.519392 | 8.4:+80361416 | MS.gene022566:CDS |
| GGGAAGATAGGTGAACTCAT+TGG | 0.519466 | 8.4:+80361498 | MS.gene022566:CDS |
| CACATTGGAATGGATTCTAA+AGG | 0.534379 | 8.4:+80361693 | MS.gene022566:CDS |
| ACCCGGCTGCTCCAAAACAT+TGG | 0.539925 | 8.4:+80362369 | MS.gene022566:CDS |
| GTTGCTTTCTGATTTGAGGT+TGG | 0.540360 | 8.4:+80361371 | MS.gene022566:CDS |
| TTAAGGCAATTCATGATGCA+AGG | 0.553764 | 8.4:+80361910 | MS.gene022566:CDS |
| GCTGTTGAAACACATTGGAA+TGG | 0.554139 | 8.4:+80361683 | MS.gene022566:CDS |
| CGAATCTTCCCAATCTGATG+AGG | 0.559311 | 8.4:+80361769 | MS.gene022566:CDS |
| CATGATAAAGGTTATCAAAG+TGG | 0.567037 | 8.4:+80361885 | MS.gene022566:CDS |
| TTGTAGATTCAGTGTCGAGA+AGG | 0.567935 | 8.4:+80361584 | MS.gene022566:CDS |
| AGTGTCCCATATCCTGACAT+AGG | 0.569168 | 8.4:-80362166 | None:intergenic |
| AGTCGCAACCATGCTTGCAA+TGG | 0.573982 | 8.4:-80362309 | None:intergenic |
| ATGATTTGAGTGATGGTAAG+GGG | 0.577556 | 8.4:+80361478 | MS.gene022566:CDS |
| AATATCTTAAATCACATGCA+TGG | 0.582398 | 8.4:+80362005 | MS.gene022566:CDS |
| ATAGCTCGGTTGATTCTACA+AGG | 0.584030 | 8.4:+80361612 | MS.gene022566:CDS |
| AATTTACTCATATTGTGAGA+CGG | 0.584295 | 8.4:-80361936 | None:intergenic |
| TATGATTTGAGTGATGGTAA+GGG | 0.587020 | 8.4:+80361477 | MS.gene022566:CDS |
| CATGGTTGCGACTAGTGACA+AGG | 0.592546 | 8.4:+80362319 | MS.gene022566:CDS |
| TAGATTCAGTGTCGAGAAGG+AGG | 0.595864 | 8.4:+80361587 | MS.gene022566:CDS |
| TTGAAGCTGTTGAAACACAT+TGG | 0.621474 | 8.4:+80361678 | MS.gene022566:CDS |
| GAATCTTCCCAATCTGATGA+GGG | 0.621938 | 8.4:+80361770 | MS.gene022566:CDS |
| CACATATGGAATCTGAACCT+CGG | 0.628454 | 8.4:-80362251 | None:intergenic |
| AGATAGGTGAACTCATTGGA+AGG | 0.629844 | 8.4:+80361502 | MS.gene022566:CDS |
| AAGTCAAAACATATAAACGC+CGG | 0.641278 | 8.4:-80362212 | None:intergenic |
| GTGGTTCTGAGATAAAGGGT+AGG | 0.659181 | 8.4:+80361232 | MS.gene022566:CDS |
| TCGAGAAGGAGGAAATAGCT+CGG | 0.662293 | 8.4:+80361598 | MS.gene022566:CDS |
| GAGGTTCAGATTCCATATGT+GGG | 0.667584 | 8.4:+80362253 | MS.gene022566:CDS |
| TAGAGAACCGAATTAAGCCG+AGG | 0.677310 | 8.4:+80362234 | MS.gene022566:CDS |
| ATGGTTGCGACTAGTGACAA+GGG | 0.685800 | 8.4:+80362320 | MS.gene022566:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTTCATGCATACTAT+TGG | + | chr8.4:80361957-80361976 | MS.gene022566:CDS | 20.0% |
| !!! | TTAACTTTTCCTTTTGTTTT+TGG | + | chr8.4:80361309-80361328 | MS.gene022566:CDS | 20.0% |
| ! | AAACATTTGATTCTTGAGTA+TGG | + | chr8.4:80361528-80361547 | MS.gene022566:CDS | 25.0% |
| ! | AAAGATTAATTTCCTATGTC+AGG | + | chr8.4:80362154-80362173 | MS.gene022566:CDS | 25.0% |
| ! | AATATCTTAAATCACATGCA+TGG | + | chr8.4:80362005-80362024 | MS.gene022566:CDS | 25.0% |
| ! | AATTTACTCATATTGTGAGA+CGG | - | chr8.4:80361939-80361958 | None:intergenic | 25.0% |
| ! | TTTGTAATGTGCAAATTGTT+GGG | + | chr8.4:80361280-80361299 | MS.gene022566:CDS | 25.0% |
| !! | CATGTGATTTAAGATATTCA+TGG | - | chr8.4:80362003-80362022 | None:intergenic | 25.0% |
| !! | CTTTGTTTGTTGAAAAGATA+TGG | + | chr8.4:80361255-80361274 | MS.gene022566:CDS | 25.0% |
| !! | TTTTCGATAAAATCAAGGAT+GGG | + | chr8.4:80361814-80361833 | MS.gene022566:CDS | 25.0% |
| !! | TTTTGTAATGTGCAAATTGT+TGG | + | chr8.4:80361279-80361298 | MS.gene022566:CDS | 25.0% |
| !!! | ATGGTTTTTCGATAAAATCA+AGG | + | chr8.4:80361809-80361828 | MS.gene022566:CDS | 25.0% |
| !!! | GTGTTTTTGGATTTTGATTT+GGG | + | chr8.4:80361393-80361412 | MS.gene022566:CDS | 25.0% |
| !!! | TTTTTCGATAAAATCAAGGA+TGG | + | chr8.4:80361813-80361832 | MS.gene022566:CDS | 25.0% |
| AAGTCAAAACATATAAACGC+CGG | - | chr8.4:80362215-80362234 | None:intergenic | 30.0% | |
| AATTTCCTATGTCAGGATAT+GGG | + | chr8.4:80362161-80362180 | MS.gene022566:CDS | 30.0% | |
| ATGTTTGGTATGATGTTTGT+AGG | + | chr8.4:80361439-80361458 | MS.gene022566:CDS | 30.0% | |
| ATTCAATCCCTAAATGTAGA+AGG | - | chr8.4:80362064-80362083 | None:intergenic | 30.0% | |
| CATGAAGCTCGAAATTTATT+GGG | - | chr8.4:80362410-80362429 | None:intergenic | 30.0% | |
| CATGATAAAGGTTATCAAAG+TGG | + | chr8.4:80361885-80361904 | MS.gene022566:CDS | 30.0% | |
| TAATTTCCTATGTCAGGATA+TGG | + | chr8.4:80362160-80362179 | MS.gene022566:CDS | 30.0% | |
| TATGATTTGAGTGATGGTAA+GGG | + | chr8.4:80361477-80361496 | MS.gene022566:CDS | 30.0% | |
| TCATGAAGCTCGAAATTTAT+TGG | - | chr8.4:80362411-80362430 | None:intergenic | 30.0% | |
| TTATGATTTGAGTGATGGTA+AGG | + | chr8.4:80361476-80361495 | MS.gene022566:CDS | 30.0% | |
| TTGATTGCCTTCTACATTTA+GGG | + | chr8.4:80362054-80362073 | MS.gene022566:CDS | 30.0% | |
| TTTGATTGCCTTCTACATTT+AGG | + | chr8.4:80362053-80362072 | MS.gene022566:CDS | 30.0% | |
| ! | AATTGCTCAAACCAATGTTT+TGG | - | chr8.4:80362383-80362402 | None:intergenic | 30.0% |
| ! | GTGTTTTATGATTTGAGTGA+TGG | + | chr8.4:80361471-80361490 | MS.gene022566:CDS | 30.0% |
| !! | AAAAGTGGTTCTGAGATAAA+GGG | + | chr8.4:80361228-80361247 | MS.gene022566:CDS | 30.0% |
| !! | AGGTTATCAAAGTGGTTTTA+AGG | + | chr8.4:80361893-80361912 | MS.gene022566:CDS | 30.0% |
| !!! | ATCTTTTTCTCTAGAGTTTC+AGG | - | chr8.4:80362140-80362159 | None:intergenic | 30.0% |
| !!! | GGTGTTTTTGGATTTTGATT+TGG | + | chr8.4:80361392-80361411 | MS.gene022566:CDS | 30.0% |
| !!! | TTTTGGATTTTGATTTGGGA+GGG | + | chr8.4:80361397-80361416 | MS.gene022566:CDS | 30.0% |
| !!! | TTTTTGGATTTTGATTTGGG+AGG | + | chr8.4:80361396-80361415 | MS.gene022566:CDS | 30.0% |
| AAACTATTCCATTGCAAGCA+TGG | + | chr8.4:80362301-80362320 | MS.gene022566:CDS | 35.0% | |
| ACCTTTATCATGCTCTTCAT+TGG | - | chr8.4:80361877-80361896 | None:intergenic | 35.0% | |
| ATGATTTGAGTGATGGTAAG+GGG | + | chr8.4:80361478-80361497 | MS.gene022566:CDS | 35.0% | |
| CCTTTATCATGCTCTTCATT+GGG | - | chr8.4:80361876-80361895 | None:intergenic | 35.0% | |
| TGCGTTGGGAACAATAAAAA+TGG | + | chr8.4:80361746-80361765 | MS.gene022566:CDS | 35.0% | |
| TTAAGGCAATTCATGATGCA+AGG | + | chr8.4:80361910-80361929 | MS.gene022566:CDS | 35.0% | |
| TTGAAGCTGTTGAAACACAT+TGG | + | chr8.4:80361678-80361697 | MS.gene022566:CDS | 35.0% | |
| ! | AGAAGAGGAGTTGATTGAAA+AGG | + | chr8.4:80361551-80361570 | MS.gene022566:CDS | 35.0% |
| ! | ATAGGTTGCTTTCTGATTTG+AGG | + | chr8.4:80361367-80361386 | MS.gene022566:CDS | 35.0% |
| ! | CACATTGGAATGGATTCTAA+AGG | + | chr8.4:80361693-80361712 | MS.gene022566:CDS | 35.0% |
| ! | TGGGAATCATAAGCTTTTAG+TGG | + | chr8.4:80361833-80361852 | MS.gene022566:CDS | 35.0% |
| ! | TTATCGATGATGAGGTTGAT+AGG | + | chr8.4:80361349-80361368 | MS.gene022566:CDS | 35.0% |
| !! | AAAAGTGTCCAAAAGCTCTA+AGG | - | chr8.4:80362192-80362211 | None:intergenic | 35.0% |
| !! | CATATGTGGGCTTTAGAAAA+GGG | + | chr8.4:80362266-80362285 | MS.gene022566:CDS | 35.0% |
| !! | CCGGGTGAATTTTAAAAACA+CGG | - | chr8.4:80362355-80362374 | None:intergenic | 35.0% |
| !! | GAAAAGTGGTTCTGAGATAA+AGG | + | chr8.4:80361227-80361246 | MS.gene022566:CDS | 35.0% |
| !! | TTCATGCATACTATTGGCTT+TGG | + | chr8.4:80361963-80361982 | MS.gene022566:CDS | 35.0% |
| !!! | CCGTGTTTTTAAAATTCACC+CGG | + | chr8.4:80362352-80362371 | MS.gene022566:CDS | 35.0% |
| !!! | GGATTTTGGCTTAGAATCTT+TGG | - | chr8.4:80362119-80362138 | None:intergenic | 35.0% |
| !!! | TCTCTAGAGTTTCAGGATTT+TGG | - | chr8.4:80362133-80362152 | None:intergenic | 35.0% |
| !!! | TGATTTGAGGTTGGTGTTTT+TGG | + | chr8.4:80361380-80361399 | MS.gene022566:CDS | 35.0% |
| AAGAACTATGCTCATGCGTT+GGG | + | chr8.4:80361732-80361751 | MS.gene022566:CDS | 40.0% | |
| AGATAGGTGAACTCATTGGA+AGG | + | chr8.4:80361502-80361521 | MS.gene022566:CDS | 40.0% | |
| ATCTGAACCTCGGCTTAATT+CGG | - | chr8.4:80362244-80362263 | None:intergenic | 40.0% | |
| CACATATGGAATCTGAACCT+CGG | - | chr8.4:80362254-80362273 | None:intergenic | 40.0% | |
| GAATCTTCCCAATCTGATGA+GGG | + | chr8.4:80361770-80361789 | MS.gene022566:CDS | 40.0% | |
| GAGGTTCAGATTCCATATGT+GGG | + | chr8.4:80362253-80362272 | MS.gene022566:CDS | 40.0% | |
| GATTCTTGAGTATGGAGAAG+AGG | + | chr8.4:80361536-80361555 | MS.gene022566:CDS | 40.0% | |
| GCTGTTGAAACACATTGGAA+TGG | + | chr8.4:80361683-80361702 | MS.gene022566:CDS | 40.0% | |
| GGAGTTGTTGAGTCTCAATT+TGG | + | chr8.4:80361638-80361657 | MS.gene022566:CDS | 40.0% | |
| TTGAAGGGAATGTGGATGTT+TGG | + | chr8.4:80361424-80361443 | MS.gene022566:CDS | 40.0% | |
| ! | AGAGCTTTTGGACACTTTTC+CGG | + | chr8.4:80362193-80362212 | MS.gene022566:CDS | 40.0% |
| ! | ATAGCTCGGTTGATTCTACA+AGG | + | chr8.4:80361612-80361631 | MS.gene022566:CDS | 40.0% |
| ! | CCCAATGAAGAGCATGATAA+AGG | + | chr8.4:80361873-80361892 | MS.gene022566:CDS | 40.0% |
| ! | GGAATGGATTCTAAAGGTCT+TGG | + | chr8.4:80361699-80361718 | MS.gene022566:CDS | 40.0% |
| ! | GTTGCTTTCTGATTTGAGGT+TGG | + | chr8.4:80361371-80361390 | MS.gene022566:CDS | 40.0% |
| ! | TCGGTTGATTCTACAAGGTT+CGG | + | chr8.4:80361617-80361636 | MS.gene022566:CDS | 40.0% |
| ! | TTGTAGATTCAGTGTCGAGA+AGG | + | chr8.4:80361584-80361603 | MS.gene022566:CDS | 40.0% |
| !! | ACTAGTGACAAGGGTTTTGT+TGG | + | chr8.4:80362329-80362348 | MS.gene022566:CDS | 40.0% |
| !! | CCATATGTGGGCTTTAGAAA+AGG | + | chr8.4:80362265-80362284 | MS.gene022566:CDS | 40.0% |
| !!! | CCTTTTCTAAAGCCCACATA+TGG | - | chr8.4:80362268-80362287 | None:intergenic | 40.0% |
| AGGGGGATTTATCGATGATG+AGG | + | chr8.4:80361341-80361360 | MS.gene022566:CDS | 45.0% | |
| AGTGATGGTAAGGGGAAGAT+AGG | + | chr8.4:80361486-80361505 | MS.gene022566:CDS | 45.0% | |
| AGTGTCCCATATCCTGACAT+AGG | - | chr8.4:80362169-80362188 | None:intergenic | 45.0% | |
| ATCGATAAATCCCCCTTCCT+CGG | - | chr8.4:80361337-80361356 | None:intergenic | 45.0% | |
| ATGGTTGCGACTAGTGACAA+GGG | + | chr8.4:80362320-80362339 | MS.gene022566:CDS | 45.0% | |
| CGAATCTTCCCAATCTGATG+AGG | + | chr8.4:80361769-80361788 | MS.gene022566:CDS | 45.0% | |
| CGAGGTTCAGATTCCATATG+TGG | + | chr8.4:80362252-80362271 | MS.gene022566:CDS | 45.0% | |
| GAAGAACTATGCTCATGCGT+TGG | + | chr8.4:80361731-80361750 | MS.gene022566:CDS | 45.0% | |
| GGGAAGATAGGTGAACTCAT+TGG | + | chr8.4:80361498-80361517 | MS.gene022566:CDS | 45.0% | |
| TAGAGAACCGAATTAAGCCG+AGG | + | chr8.4:80362234-80362253 | MS.gene022566:CDS | 45.0% | |
| TCCTCGGCACCAAAAACAAA+AGG | - | chr8.4:80361321-80361340 | None:intergenic | 45.0% | |
| TCGAGAAGGAGGAAATAGCT+CGG | + | chr8.4:80361598-80361617 | MS.gene022566:CDS | 45.0% | |
| ! | ATTTGGGAGGGTGTGTTGAA+GGG | + | chr8.4:80361409-80361428 | MS.gene022566:CDS | 45.0% |
| ! | TAGATTCAGTGTCGAGAAGG+AGG | + | chr8.4:80361587-80361606 | MS.gene022566:CDS | 45.0% |
| !! | GTGGTTCTGAGATAAAGGGT+AGG | + | chr8.4:80361232-80361251 | MS.gene022566:CDS | 45.0% |
| !!! | AACCAATGTTTTGGAGCAGC+CGG | - | chr8.4:80362374-80362393 | None:intergenic | 45.0% |
| !!! | TCCTTTTGTTTTTGGTGCCG+AGG | + | chr8.4:80361317-80361336 | MS.gene022566:CDS | 45.0% |
| !!! | TTGTTTTTGGTGCCGAGGAA+GGG | + | chr8.4:80361322-80361341 | MS.gene022566:CDS | 45.0% |
| !!! | TTTGTTTTTGGTGCCGAGGA+AGG | + | chr8.4:80361321-80361340 | MS.gene022566:CDS | 45.0% |
| ACCCATAGCCCTCATCAGAT+TGG | - | chr8.4:80361781-80361800 | None:intergenic | 50.0% | |
| AGGGTGTGTTGAAGGGAATG+TGG | + | chr8.4:80361416-80361435 | MS.gene022566:CDS | 50.0% | |
| AGTCGCAACCATGCTTGCAA+TGG | - | chr8.4:80362312-80362331 | None:intergenic | 50.0% | |
| CATGGTTGCGACTAGTGACA+AGG | + | chr8.4:80362319-80362338 | MS.gene022566:CDS | 50.0% | |
| CCCAATCTGATGAGGGCTAT+GGG | + | chr8.4:80361777-80361796 | MS.gene022566:CDS | 50.0% | |
| CCCATAGCCCTCATCAGATT+GGG | - | chr8.4:80361780-80361799 | None:intergenic | 50.0% | |
| GGGCTATGGGTTTACGTGAA+TGG | + | chr8.4:80361790-80361809 | MS.gene022566:CDS | 50.0% | |
| TCCCAATCTGATGAGGGCTA+TGG | + | chr8.4:80361776-80361795 | MS.gene022566:CDS | 50.0% | |
| ! | GATTTGGGAGGGTGTGTTGA+AGG | + | chr8.4:80361408-80361427 | MS.gene022566:CDS | 50.0% |
| ! | GGGACACTCCTTAGAGCTTT+TGG | + | chr8.4:80362181-80362200 | MS.gene022566:CDS | 50.0% |
| !!! | ACCAATGTTTTGGAGCAGCC+GGG | - | chr8.4:80362373-80362392 | None:intergenic | 50.0% |
| !!! | TGTTTTTGGTGCCGAGGAAG+GGG | + | chr8.4:80361323-80361342 | MS.gene022566:CDS | 50.0% |
| ACCCGGCTGCTCCAAAACAT+TGG | + | chr8.4:80362369-80362388 | MS.gene022566:CDS | 55.0% | |
| !!! | GTTTTTGGTGCCGAGGAAGG+GGG | + | chr8.4:80361324-80361343 | MS.gene022566:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 80361219 | 80362430 | 80361219 | ID=MS.gene022566 |
| chr8.4 | mRNA | 80361219 | 80362430 | 80361219 | ID=MS.gene022566.t1;Parent=MS.gene022566 |
| chr8.4 | exon | 80361219 | 80362430 | 80361219 | ID=MS.gene022566.t1.exon1;Parent=MS.gene022566.t1 |
| chr8.4 | CDS | 80361219 | 80362430 | 80361219 | ID=cds.MS.gene022566.t1;Parent=MS.gene022566.t1 |
| Gene Sequence |
| Protein sequence |
