AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023016

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023016.t1 MTR_7g053410 95.368 367 7 2 1 363 19 379 0.0 706
MS.gene023016.t1 MTR_7g053410 95.368 367 7 2 1 363 19 379 0.0 706
MS.gene023016.t1 MTR_8g012290 60.267 375 90 13 12 363 15 353 6.35e-122 361
MS.gene023016.t1 MTR_8g012290 60.267 375 90 13 12 363 15 353 6.50e-122 361
MS.gene023016.t1 MTR_1g017350 39.373 287 134 10 79 363 74 322 3.59e-41 149
MS.gene023016.t1 MTR_1g017350 39.373 287 134 10 79 363 74 322 4.17e-41 149
MS.gene023016.t1 MTR_1g017350 39.373 287 134 10 79 363 74 322 4.79e-41 149
MS.gene023016.t1 MTR_1g017350 39.373 287 134 10 79 363 74 322 5.28e-41 149
MS.gene023016.t1 MTR_5g037250 60.484 124 32 2 240 363 68 174 3.04e-39 140
MS.gene023016.t1 MTR_4g070320 63.200 125 35 3 246 363 85 205 1.37e-38 141
MS.gene023016.t1 MTR_8g062240 62.185 119 38 2 245 363 102 213 4.05e-38 138
MS.gene023016.t1 MTR_3g116770 64.912 114 36 2 254 363 140 253 4.08e-38 141
MS.gene023016.t1 MTR_3g116770 64.912 114 36 2 254 363 140 253 4.24e-38 140
MS.gene023016.t1 MTR_8g065740 40.076 262 124 9 116 363 125 367 1.86e-37 140
MS.gene023016.t1 MTR_3g498825 88.732 71 8 0 293 363 139 209 3.20e-36 134
MS.gene023016.t1 MTR_8g099880 85.915 71 10 0 293 363 137 207 4.37e-36 134
MS.gene023016.t1 MTR_1g059270 77.273 66 15 0 298 363 157 222 4.01e-31 119
MS.gene023016.t1 MTR_7g092510 78.788 66 14 0 298 363 170 235 6.81e-31 120
MS.gene023016.t1 MTR_1g059270 77.273 66 15 0 298 363 157 222 1.05e-30 119
MS.gene023016.t1 MTR_6g084120 63.750 80 29 0 279 358 133 212 2.62e-26 106
MS.gene023016.t1 MTR_4g131160 73.016 63 16 1 301 363 196 257 1.52e-21 95.5
MS.gene023016.t1 MTR_4g131160 73.016 63 16 1 301 363 199 260 1.87e-21 95.1
MS.gene023016.t1 MTR_1g080890 63.889 72 25 1 292 363 184 254 5.59e-21 93.2
MS.gene023016.t1 MTR_4g033295 55.556 63 28 0 301 363 118 180 1.39e-15 74.7
MS.gene023016.t1 MTR_2g098310 37.398 123 68 2 249 363 273 394 1.63e-15 77.8
MS.gene023016.t1 MTR_2g098310 36.885 122 68 2 249 362 273 393 8.13e-15 75.5
MS.gene023016.t1 MTR_4g065870 58.065 62 26 0 301 362 355 416 8.97e-15 75.5
MS.gene023016.t1 MTR_4g065870 58.065 62 26 0 301 362 355 416 1.03e-14 75.5
MS.gene023016.t1 MTR_4g033295 54.839 62 28 0 301 362 118 179 1.23e-14 72.0
MS.gene023016.t1 MTR_4g107320 70.213 47 13 1 319 364 60 106 2.82e-14 69.7
MS.gene023016.t1 MTR_1g070870 59.722 72 28 1 292 363 111 181 3.28e-14 72.4
MS.gene023016.t1 MTR_1g070870 59.722 72 28 1 292 363 114 184 3.30e-14 72.8
MS.gene023016.t1 MTR_7g092540 52.381 63 30 0 301 363 243 305 8.49e-14 71.6
MS.gene023016.t1 MTR_1g052470 51.613 62 30 0 301 362 298 359 2.21e-13 71.2
MS.gene023016.t1 MTR_1g069155 54.098 61 27 1 303 363 319 378 2.68e-13 71.2
MS.gene023016.t1 MTR_3g027650 51.562 64 31 0 301 364 322 385 3.24e-13 70.9
MS.gene023016.t1 MTR_7g092540 50.794 63 31 0 301 363 243 305 4.14e-13 69.7
MS.gene023016.t1 MTR_3g028520 50.794 63 31 0 301 363 322 384 6.84e-13 69.7
MS.gene023016.t1 MTR_3g027650 50.794 63 31 0 301 363 322 384 6.84e-13 69.7
MS.gene023016.t1 MTR_1g084980 50.820 61 29 1 303 363 464 523 7.47e-13 70.1
MS.gene023016.t1 MTR_8g036235 47.619 63 33 0 301 363 316 378 3.21e-12 67.8
MS.gene023016.t1 MTR_7g099540 47.887 71 36 1 293 363 244 313 1.04e-11 66.2
MS.gene023016.t1 MTR_1g019240 40.230 87 44 2 277 363 68 146 1.08e-11 65.1
MS.gene023016.t1 MTR_1g018090 39.796 98 39 2 266 363 258 335 1.59e-11 65.5
MS.gene023016.t1 MTR_7g099540 52.542 59 27 1 304 362 255 312 1.80e-11 65.5
MS.gene023016.t1 MTR_3g449770 52.459 61 28 1 303 363 311 370 2.53e-11 65.1
MS.gene023016.t1 MTR_5g005110 50.000 62 30 1 302 363 225 285 4.95e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023016.t1 AT3G07340 47.283 368 116 10 1 363 26 320 8.29e-86 266
MS.gene023016.t1 AT3G07340 47.283 368 116 10 1 363 26 320 8.53e-86 267
MS.gene023016.t1 AT5G48560 50.263 380 124 15 1 363 32 363 3.17e-83 261
MS.gene023016.t1 AT5G48560 50.263 380 124 15 1 363 32 363 7.99e-83 261
MS.gene023016.t1 AT3G23690 61.074 149 49 3 216 363 113 253 3.34e-47 164
MS.gene023016.t1 AT1G68920 40.559 286 135 9 96 363 97 365 2.83e-43 156
MS.gene023016.t1 AT1G68920 40.559 286 135 9 96 363 97 365 2.83e-43 156
MS.gene023016.t1 AT1G68920 40.559 286 135 9 96 363 97 365 2.83e-43 156
MS.gene023016.t1 AT1G68920 40.000 285 137 8 96 363 97 364 4.51e-43 156
MS.gene023016.t1 AT1G59640 62.295 122 44 1 242 363 79 198 1.82e-40 144
MS.gene023016.t1 AT1G59640 62.295 122 44 1 242 363 79 198 1.99e-40 145
MS.gene023016.t1 AT1G26260 40.000 260 107 9 111 363 68 285 1.51e-39 144
MS.gene023016.t1 AT1G26260 40.000 260 107 9 111 363 68 285 1.51e-39 144
MS.gene023016.t1 AT1G26260 40.000 260 107 9 111 363 68 285 1.51e-39 144
MS.gene023016.t1 AT1G26260 40.000 260 107 9 111 363 68 285 1.51e-39 144
MS.gene023016.t1 AT5G50915 74.737 95 17 2 275 363 105 198 2.71e-38 138
MS.gene023016.t1 AT5G50915 74.737 95 17 2 275 363 105 198 2.71e-38 138
MS.gene023016.t1 AT5G50915 74.737 95 17 2 275 363 105 198 5.85e-38 138
MS.gene023016.t1 AT5G50915 74.737 95 17 2 275 363 105 198 5.85e-38 138
MS.gene023016.t1 AT4G34530 53.247 154 50 4 228 363 85 234 9.25e-38 138
MS.gene023016.t1 AT5G62610 83.099 71 12 0 292 362 144 214 3.38e-37 135
MS.gene023016.t1 AT5G62610 83.099 71 12 0 292 362 144 214 3.38e-37 135
MS.gene023016.t1 AT1G10120 74.444 90 22 1 275 363 179 268 4.88e-37 137
MS.gene023016.t1 AT1G10120 74.444 90 22 1 275 363 179 268 4.88e-37 137
MS.gene023016.t1 AT1G26260 40.650 246 97 9 125 363 60 263 1.19e-36 136
MS.gene023016.t1 AT2G18300 61.864 118 39 2 251 362 129 246 3.73e-36 134
MS.gene023016.t1 AT2G18300 61.864 118 39 2 251 362 129 246 3.77e-36 134
MS.gene023016.t1 AT4G36540 62.609 115 39 2 249 363 93 203 6.35e-36 133
MS.gene023016.t1 AT4G36540 62.609 115 39 2 249 363 93 203 6.88e-36 132
MS.gene023016.t1 AT2G18300 61.864 118 39 2 251 362 129 246 7.09e-36 134
MS.gene023016.t1 AT1G26260 79.268 82 14 2 285 363 153 234 1.49e-35 132
MS.gene023016.t1 AT2G42300 78.788 66 14 0 298 363 182 247 1.99e-31 120
MS.gene023016.t1 AT3G57800 81.818 66 12 0 298 363 201 266 2.82e-31 122
MS.gene023016.t1 AT2G42300 78.788 66 14 0 298 363 182 247 7.38e-31 120
MS.gene023016.t1 AT1G25330 73.239 71 19 0 293 363 96 166 1.08e-30 117
MS.gene023016.t1 AT1G18400 79.688 64 13 0 299 362 143 206 1.87e-29 114
MS.gene023016.t1 AT1G18400 79.688 64 13 0 299 362 143 206 4.15e-29 113
MS.gene023016.t1 AT1G73830 79.688 64 13 0 300 363 146 209 7.01e-29 113
MS.gene023016.t1 AT1G73830 79.688 64 13 0 300 363 146 209 7.09e-29 113
MS.gene023016.t1 AT3G57800 47.788 113 12 1 298 363 201 313 9.48e-23 99.0
MS.gene023016.t1 AT2G24260 66.667 69 22 1 295 363 29 96 9.82e-23 96.3
MS.gene023016.t1 AT4G30980 52.525 99 36 3 265 363 104 191 6.67e-22 95.1
MS.gene023016.t1 AT2G24260 66.667 69 22 1 295 363 132 199 8.60e-22 95.5
MS.gene023016.t1 AT4G30980 52.525 99 36 3 265 363 152 239 1.14e-21 95.1
MS.gene023016.t1 AT5G58010 73.016 63 16 1 301 363 99 160 4.58e-21 92.4
MS.gene023016.t1 AT2G42300 83.721 43 7 0 298 340 182 224 5.82e-19 85.1
MS.gene023016.t1 AT2G42300 83.721 43 7 0 298 340 182 224 5.82e-19 85.1
MS.gene023016.t1 AT2G42300 83.721 43 7 0 298 340 182 224 6.45e-19 85.1
MS.gene023016.t1 AT2G42280 53.125 64 30 0 301 364 279 342 2.76e-14 73.6
MS.gene023016.t1 AT4G09180 53.125 64 30 0 299 362 182 245 3.59e-14 72.4
MS.gene023016.t1 AT2G42280 52.381 63 30 0 301 363 279 341 4.49e-14 73.2
MS.gene023016.t1 AT1G51140 55.556 63 28 0 301 363 304 366 5.86e-14 72.8
MS.gene023016.t1 AT2G20180 55.000 60 26 1 304 363 281 339 1.11e-13 71.6
MS.gene023016.t1 AT4G28815 56.897 58 24 1 304 361 71 127 1.92e-13 69.7
MS.gene023016.t1 AT4G28790 37.398 123 59 3 241 363 228 332 1.99e-13 71.6
MS.gene023016.t1 AT1G35460 53.226 62 29 0 301 362 181 242 2.28e-13 69.7
MS.gene023016.t1 AT4G28790 37.705 122 58 3 241 362 228 331 2.44e-13 70.9
MS.gene023016.t1 AT4G02590 57.143 77 28 2 291 363 69 144 2.50e-13 69.7
MS.gene023016.t1 AT4G02590 57.143 77 28 2 291 363 132 207 3.02e-13 70.1
MS.gene023016.t1 AT4G02590 57.143 77 28 2 291 363 132 207 3.02e-13 70.1
MS.gene023016.t1 AT2G20180 53.333 60 27 1 304 363 210 268 3.87e-13 70.5
MS.gene023016.t1 AT2G20180 53.333 60 27 1 304 363 210 268 3.87e-13 70.5
MS.gene023016.t1 AT2G20180 53.333 60 27 1 304 363 210 268 3.87e-13 70.5
MS.gene023016.t1 AT2G20180 53.333 60 27 1 304 363 281 339 4.98e-13 70.5
MS.gene023016.t1 AT2G20180 53.333 60 27 1 304 363 281 339 4.98e-13 70.5
MS.gene023016.t1 AT2G20180 53.333 60 27 1 304 363 281 339 4.98e-13 70.5
MS.gene023016.t1 AT2G20180 53.333 60 27 1 304 363 281 339 4.98e-13 70.5
MS.gene023016.t1 AT1G09530 50.820 61 29 1 303 363 339 398 6.06e-13 70.5
MS.gene023016.t1 AT1G09530 50.820 61 29 1 303 363 339 398 6.06e-13 70.5
MS.gene023016.t1 AT1G09530 50.820 61 29 1 303 363 339 398 6.06e-13 70.5
MS.gene023016.t1 AT1G09530 50.820 61 29 1 303 363 339 398 6.06e-13 70.5
MS.gene023016.t1 AT1G09530 50.820 61 29 1 303 363 339 398 6.06e-13 70.5
MS.gene023016.t1 AT1G09530 50.820 61 29 1 303 363 339 398 6.06e-13 70.5
MS.gene023016.t1 AT4G28815 56.897 58 24 1 304 361 147 203 6.52e-13 69.3
MS.gene023016.t1 AT1G03040 63.492 63 22 1 301 363 139 200 1.15e-12 68.2
MS.gene023016.t1 AT1G03040 63.492 63 22 1 301 363 144 205 1.29e-12 68.2
MS.gene023016.t1 AT1G03040 63.492 63 22 1 301 363 144 205 2.09e-12 67.8
MS.gene023016.t1 AT4G28800 53.333 60 27 1 304 363 252 310 5.54e-12 67.0
MS.gene023016.t1 AT4G28800 54.237 59 26 1 304 362 264 321 5.66e-12 67.0
MS.gene023016.t1 AT2G14760 41.573 89 51 1 275 363 211 298 7.49e-12 66.2
MS.gene023016.t1 AT4G33880 41.860 86 49 1 278 363 243 327 7.68e-12 66.2
MS.gene023016.t1 AT2G43140 48.571 70 34 1 295 362 126 195 1.37e-11 63.9
MS.gene023016.t1 AT2G46970 37.624 101 48 3 268 363 194 284 5.36e-11 63.9
MS.gene023016.t1 AT2G46970 34.234 111 55 3 258 363 156 253 6.88e-11 63.5
MS.gene023016.t1 AT2G46970 37.624 101 48 3 268 363 172 262 7.28e-11 63.5

Find 49 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAATTCCTTCTAGGTTAC+TGG 0.201123 7.2:-49785337 MS.gene023016:intron
AGAGAATTGATTGGTAAATT+AGG 0.220575 7.2:-49786619 MS.gene023016:CDS
TCTACTCCATTGTTGGAAAA+TGG 0.244193 7.2:-49786337 MS.gene023016:CDS
ACTAAAAGTTGAAGTTTCTT+TGG 0.284862 7.2:+49786114 None:intergenic
TTCTGCAACAGTTGAATTCA+TGG 0.325717 7.2:+49786462 None:intergenic
GAATCAACAATCTCTGAAAA+TGG 0.326758 7.2:-49786196 MS.gene023016:CDS
ATTGTTGAGATGTTCAATTT+TGG 0.329946 7.2:+49786487 None:intergenic
TTACTCTTTCTGCAAGACTA+TGG 0.332464 7.2:+49785758 None:intergenic
CTTCTCCTTATGTGAATTCA+AGG 0.338861 7.2:-49786165 MS.gene023016:CDS
TCTTGTCCCTGGTTGCAATA+AGG 0.355254 7.2:-49785434 MS.gene023016:intron
GCTGCAAAATTCTCTTGCTT+TGG 0.361360 7.2:-49786409 MS.gene023016:CDS
GAATTGTTCTGCTCAATTGC+AGG 0.362293 7.2:-49786248 MS.gene023016:CDS
GATCCAAGTTCTTTCAAAGA+TGG 0.405954 7.2:+49786289 None:intergenic
AATTCTCTTGCTTTGGAAGT+AGG 0.408436 7.2:-49786402 MS.gene023016:CDS
TCAAAGATCTACTCCATTGT+TGG 0.414601 7.2:-49786344 MS.gene023016:CDS
CTGACATGAATGTAATCCTT+TGG 0.422273 7.2:+49785808 None:intergenic
GTTGTTGACTTATCCCATAT+TGG 0.422874 7.2:+49786739 None:intergenic
GCAGAATTCTCAACTGATCC+TGG 0.423123 7.2:-49786445 MS.gene023016:CDS
TGATTCAGCACTTAGTTCAA+TGG 0.424451 7.2:-49786695 MS.gene023016:CDS
AGTCCATCTTTGAAAGAACT+TGG 0.430915 7.2:-49786292 MS.gene023016:CDS
TTTGTCATCAGAGAATTGAT+TGG 0.446145 7.2:-49786628 MS.gene023016:CDS
ATTGGTAAATTAGGAAACAT+TGG 0.447086 7.2:-49786610 MS.gene023016:CDS
AAAATTGTCATTTGACATGT+TGG 0.469622 7.2:+49786648 None:intergenic
ATGTAATCCTTTGGAGCCTC+AGG 0.488546 7.2:+49785817 None:intergenic
AAGCAGAGGAAGAATCAAAA+GGG 0.491073 7.2:-49785897 MS.gene023016:CDS
CTTGAATTCACATAAGGAGA+AGG 0.513147 7.2:+49786166 None:intergenic
GCAGCTCTTTCTGCAAAACC+AGG 0.515215 7.2:+49786427 None:intergenic
TTTGGAAGTAGGAGTTTCAA+TGG 0.516264 7.2:-49786391 MS.gene023016:CDS
AAAGCAGAGGAAGAATCAAA+AGG 0.521509 7.2:-49785898 MS.gene023016:CDS
AAAAGAAAAGTTTCTTCCAA+AGG 0.532200 7.2:-49786142 MS.gene023016:CDS
AAAACCTCCTGAGGCTCCAA+AGG 0.541009 7.2:-49785824 MS.gene023016:CDS
TGATGAGATCTCACAAACAT+TGG 0.547828 7.2:-49786578 MS.gene023016:CDS
AACCATCTTCAATGCCTACA+TGG 0.550038 7.2:-49786807 None:intergenic
CTTCTACAAGATCTTGTCCC+TGG 0.550938 7.2:-49785445 MS.gene023016:CDS
GGAGGGAGAAAATCAGTGAA+AGG 0.560766 7.2:-49785474 MS.gene023016:CDS
AAGCGCATGAAAACAAATGA+AGG 0.563724 7.2:-49785946 MS.gene023016:CDS
GATGAAAGTGATTGCCATGT+AGG 0.566700 7.2:+49786793 None:intergenic
TACCAACCTTATTGCAACCA+GGG 0.572746 7.2:+49785428 None:intergenic
ATCATTGCAGCGTCAAGTTG+AGG 0.580066 7.2:-49785275 MS.gene023016:CDS
TAATCCTTTGGAGCCTCAGG+AGG 0.604460 7.2:+49785820 None:intergenic
TTACCAACCTTATTGCAACC+AGG 0.614090 7.2:+49785427 None:intergenic
ATGTTGGAATTTGAAGCTGC+AGG 0.621377 7.2:+49786664 None:intergenic
GGTACAAATAGTAATAATGG+AGG 0.627017 7.2:-49785874 MS.gene023016:CDS
AAAATTGAACATCTCAACAA+TGG 0.629044 7.2:-49786485 MS.gene023016:CDS
GAGCAATTCAAAACCTCCTG+AGG 0.634856 7.2:-49785833 MS.gene023016:CDS
AAATGGTAAAGTAAAAGCAG+AGG 0.646618 7.2:-49785911 MS.gene023016:CDS
ATTCATGTCAGAGCAAGAAG+AGG 0.647303 7.2:-49785796 MS.gene023016:CDS
AGCAGAGGAAGAATCAAAAG+GGG 0.649630 7.2:-49785896 MS.gene023016:CDS
GCAGAGGAAGAATCAAAAGG+GGG 0.717660 7.2:-49785895 MS.gene023016:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAAATTAATTTTTGTTAT+AGG - chr7.2:49786563-49786582 MS.gene023016:CDS 10.0%
!! AAATGACTAATTTAATTAAG+AGG + chr7.2:49786026-49786045 None:intergenic 15.0%
!! AATGACTAATTTAATTAAGA+GGG + chr7.2:49786025-49786044 None:intergenic 15.0%
!! GGTAATAATTAGATAAATTA+AGG - chr7.2:49786654-49786673 MS.gene023016:CDS 15.0%
!!! ATTAATTTTTGTTATAGGTT+AGG - chr7.2:49786568-49786587 MS.gene023016:CDS 15.0%
!!! TCATATTATAACATATTTTG+AGG + chr7.2:49786468-49786487 None:intergenic 15.0%
!! TATGAATTATAATTCCTTCT+AGG - chr7.2:49786719-49786738 MS.gene023016:CDS 20.0%
!! TTCATATTCTAAATCCAAAA+GGG - chr7.2:49786044-49786063 MS.gene023016:intron 20.0%
!! TTTCATATTCTAAATCCAAA+AGG - chr7.2:49786043-49786062 MS.gene023016:intron 20.0%
!!! CATTTTTGTTTTTGCAATAT+AGG - chr7.2:49786068-49786087 MS.gene023016:intron 20.0%
!!! TTCAATTTTTAACTTACCAT+TGG + chr7.2:49785981-49786000 None:intergenic 20.0%
! AAAAGAAAAGTTTCTTCCAA+AGG - chr7.2:49785921-49785940 MS.gene023016:CDS 25.0%
! AAAATTGAACATCTCAACAA+TGG - chr7.2:49785578-49785597 MS.gene023016:intron 25.0%
! ACTAAAAGTTGAAGTTTCTT+TGG + chr7.2:49785952-49785971 None:intergenic 25.0%
! AGAGAATTGATTGGTAAATT+AGG - chr7.2:49785444-49785463 MS.gene023016:CDS 25.0%
! ATGATTGTTAGTGTCAATTA+TGG + chr7.2:49786354-49786373 None:intergenic 25.0%
! ATGTTGACAATATACATGTT+AGG - chr7.2:49786522-49786541 MS.gene023016:CDS 25.0%
! ATTGGTAAATTAGGAAACAT+TGG - chr7.2:49785453-49785472 MS.gene023016:CDS 25.0%
! GAAGGTGAAAAAATTGAAAA+TGG - chr7.2:49786135-49786154 MS.gene023016:CDS 25.0%
! TAACATGTATATTGTCAACA+TGG + chr7.2:49786523-49786542 None:intergenic 25.0%
! TTAAGGATTCAGAATTTGAT+TGG - chr7.2:49786671-49786690 MS.gene023016:CDS 25.0%
!! AAAAACAAAAATGACCCTTT+TGG + chr7.2:49786061-49786080 None:intergenic 25.0%
!! AAAATTGTCATTTGACATGT+TGG + chr7.2:49785418-49785437 None:intergenic 25.0%
!! ATTGTTGAGATGTTCAATTT+TGG + chr7.2:49785579-49785598 None:intergenic 25.0%
!!! AATTTTTAACTTACCATTGG+AGG + chr7.2:49785978-49785997 None:intergenic 25.0%
!!! AATTTTTGTTATAGGTTAGG+AGG - chr7.2:49786571-49786590 MS.gene023016:CDS 25.0%
!!! ATTGTTTTTACACACCAATA+TGG - chr7.2:49785310-49785329 MS.gene023016:CDS 25.0%
!!! ATTTTTAACTTACCATTGGA+GGG + chr7.2:49785977-49785996 None:intergenic 25.0%
!!! ATTTTTGTTATAGGTTAGGA+GGG - chr7.2:49786572-49786591 MS.gene023016:CDS 25.0%
!!! TTGTTTTTACACACCAATAT+GGG - chr7.2:49785311-49785330 MS.gene023016:CDS 25.0%
AAATGGTAAAGTAAAAGCAG+AGG - chr7.2:49786152-49786171 MS.gene023016:CDS 30.0%
ACATATCGTGGCAATATAAA+AGG + chr7.2:49786404-49786423 None:intergenic 30.0%
GGTACAAATAGTAATAATGG+AGG - chr7.2:49786189-49786208 MS.gene023016:CDS 30.0%
TATAATTCCTTCTAGGTTAC+TGG - chr7.2:49786726-49786745 MS.gene023016:CDS 30.0%
TGTGACAATGTGATAAAATG+CGG - chr7.2:49786421-49786440 MS.gene023016:CDS 30.0%
TTGGTGTGTAAAAACAATCT+TGG + chr7.2:49785308-49785327 None:intergenic 30.0%
TTTGTCATCAGAGAATTGAT+TGG - chr7.2:49785435-49785454 MS.gene023016:CDS 30.0%
! AGTTTTCCATTTTCCAACAA+TGG + chr7.2:49785735-49785754 None:intergenic 30.0%
! CTTTTCCTTGAATTCACATA+AGG + chr7.2:49785906-49785925 None:intergenic 30.0%
! GAATCAACAATCTCTGAAAA+TGG - chr7.2:49785867-49785886 MS.gene023016:CDS 30.0%
!! AATTTTGGAGGAGAATTCAA+AGG + chr7.2:49785564-49785583 None:intergenic 30.0%
!! ATTTTGGAGGAGAATTCAAA+GGG + chr7.2:49785563-49785582 None:intergenic 30.0%
!!! AGTTTCTTTGGTTTTTCCTT+TGG + chr7.2:49785940-49785959 None:intergenic 30.0%
!!! GTCAACATGGTTTTAAATTG+TGG + chr7.2:49786510-49786529 None:intergenic 30.0%
AAAGCAGAGGAAGAATCAAA+AGG - chr7.2:49786165-49786184 MS.gene023016:CDS 35.0%
AAGCAGAGGAAGAATCAAAA+GGG - chr7.2:49786166-49786185 MS.gene023016:CDS 35.0%
AAGCGCATGAAAACAAATGA+AGG - chr7.2:49786117-49786136 MS.gene023016:CDS 35.0%
CTGACATGAATGTAATCCTT+TGG + chr7.2:49786258-49786277 None:intergenic 35.0%
CTTCTCCTTATGTGAATTCA+AGG - chr7.2:49785898-49785917 MS.gene023016:CDS 35.0%
CTTGAATTCACATAAGGAGA+AGG + chr7.2:49785900-49785919 None:intergenic 35.0%
GATCCAAGTTCTTTCAAAGA+TGG + chr7.2:49785777-49785796 None:intergenic 35.0%
TATCACATTGTCACATATCG+TGG + chr7.2:49786416-49786435 None:intergenic 35.0%
TCAAAGATCTACTCCATTGT+TGG - chr7.2:49785719-49785738 MS.gene023016:intron 35.0%
TCTACTCCATTGTTGGAAAA+TGG - chr7.2:49785726-49785745 MS.gene023016:intron 35.0%
TGATGAGATCTCACAAACAT+TGG - chr7.2:49785485-49785504 MS.gene023016:intron 35.0%
TGATTCAGCACTTAGTTCAA+TGG - chr7.2:49785368-49785387 MS.gene023016:intron 35.0%
TTACTCTTTCTGCAAGACTA+TGG + chr7.2:49786308-49786327 None:intergenic 35.0%
TTCTGCAACAGTTGAATTCA+TGG + chr7.2:49785604-49785623 None:intergenic 35.0%
TTTGGAAGTAGGAGTTTCAA+TGG - chr7.2:49785672-49785691 MS.gene023016:intron 35.0%
! AACTTTTAGTAACCCTCCAA+TGG - chr7.2:49785962-49785981 MS.gene023016:CDS 35.0%
! AGTCCATCTTTGAAAGAACT+TGG - chr7.2:49785771-49785790 MS.gene023016:CDS 35.0%
! GGGGGTACAAATAGTAATAA+TGG - chr7.2:49786186-49786205 MS.gene023016:CDS 35.0%
! GTTGAGATGTTCAATTTTGG+AGG + chr7.2:49785576-49785595 None:intergenic 35.0%
!! AATTCTCTTGCTTTGGAAGT+AGG - chr7.2:49785661-49785680 MS.gene023016:intron 35.0%
!! GTTGTTGACTTATCCCATAT+TGG + chr7.2:49785327-49785346 None:intergenic 35.0%
!! TTTTGGAGGAGAATTCAAAG+GGG + chr7.2:49785562-49785581 None:intergenic 35.0%
AGCAGAGGAAGAATCAAAAG+GGG - chr7.2:49786167-49786186 MS.gene023016:CDS 40.0%
ATTCATGTCAGAGCAAGAAG+AGG - chr7.2:49786267-49786286 MS.gene023016:CDS 40.0%
GAATTGTTCTGCTCAATTGC+AGG - chr7.2:49785815-49785834 MS.gene023016:CDS 40.0%
GATGAAAGTGATTGCCATGT+AGG + chr7.2:49785273-49785292 None:intergenic 40.0%
GCTGCAAAATTCTCTTGCTT+TGG - chr7.2:49785654-49785673 MS.gene023016:intron 40.0%
TACCAACCTTATTGCAACCA+GGG + chr7.2:49786638-49786657 None:intergenic 40.0%
TTACCAACCTTATTGCAACC+AGG + chr7.2:49786639-49786658 None:intergenic 40.0%
! ATGTTGGAATTTGAAGCTGC+AGG + chr7.2:49785402-49785421 None:intergenic 40.0%
! TGCTTTTCCAGTAACCTAGA+AGG + chr7.2:49786736-49786755 None:intergenic 40.0%
CTTCTACAAGATCTTGTCCC+TGG - chr7.2:49786618-49786637 MS.gene023016:CDS 45.0%
GAGCAATTCAAAACCTCCTG+AGG - chr7.2:49786230-49786249 MS.gene023016:CDS 45.0%
GCAGAATTCTCAACTGATCC+TGG - chr7.2:49785618-49785637 MS.gene023016:intron 45.0%
GCAGAGGAAGAATCAAAAGG+GGG - chr7.2:49786168-49786187 MS.gene023016:CDS 45.0%
GGAGGGAGAAAATCAGTGAA+AGG - chr7.2:49786589-49786608 MS.gene023016:CDS 45.0%
TATGACCGCAATTGCAGTTG+TGG - chr7.2:49786483-49786502 MS.gene023016:CDS 45.0%
TCTTGTCCCTGGTTGCAATA+AGG - chr7.2:49786629-49786648 MS.gene023016:CDS 45.0%
! ATCATTGCAGCGTCAAGTTG+AGG - chr7.2:49786788-49786807 MS.gene023016:CDS 45.0%
!! ATGTAATCCTTTGGAGCCTC+AGG + chr7.2:49786249-49786268 None:intergenic 45.0%
AAAACCTCCTGAGGCTCCAA+AGG - chr7.2:49786239-49786258 MS.gene023016:CDS 50.0%
GCAGCTCTTTCTGCAAAACC+AGG + chr7.2:49785639-49785658 None:intergenic 50.0%
GTCCCTGGTTGCAATAAGGT+TGG - chr7.2:49786633-49786652 MS.gene023016:CDS 50.0%
GTGGTCCACAACTGCAATTG+CGG + chr7.2:49786491-49786510 None:intergenic 50.0%
!! TAATCCTTTGGAGCCTCAGG+AGG + chr7.2:49786246-49786265 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 49785267 49786818 49785267 ID=MS.gene023016
chr7.2 mRNA 49785267 49786818 49785267 ID=MS.gene023016.t1;Parent=MS.gene023016
chr7.2 exon 49786102 49786818 49786102 ID=MS.gene023016.t1.exon1;Parent=MS.gene023016.t1
chr7.2 CDS 49786102 49786818 49786102 ID=cds.MS.gene023016.t1;Parent=MS.gene023016.t1
chr7.2 exon 49785762 49785995 49785762 ID=MS.gene023016.t1.exon2;Parent=MS.gene023016.t1
chr7.2 CDS 49785762 49785995 49785762 ID=cds.MS.gene023016.t1;Parent=MS.gene023016.t1
chr7.2 exon 49785435 49785500 49785435 ID=MS.gene023016.t1.exon3;Parent=MS.gene023016.t1
chr7.2 CDS 49785435 49785500 49785435 ID=cds.MS.gene023016.t1;Parent=MS.gene023016.t1
chr7.2 exon 49785267 49785344 49785267 ID=MS.gene023016.t1.exon4;Parent=MS.gene023016.t1
chr7.2 CDS 49785267 49785344 49785267 ID=cds.MS.gene023016.t1;Parent=MS.gene023016.t1
Gene Sequence

>MS.gene023016

ATGCCTACATGGCAATCACTTTCATCAGAACAACAGAACCAAGATTGTTTTTACACACCAATATGGGATAAGTCAACAACAGATCAATGTGTTAATCAATTTGATTCAGCACTTAGTTCAATGGTATCTTCACCTGCAGCTTCAAATTCCAACATGTCAAATGACAATTTTGTCATCAGAGAATTGATTGGTAAATTAGGAAACATTGGTAATTGTTCTGATGAGATCTCACAAACATTGGTTGCTGCAAATTCATACATCAATAGCAATAACAATACTTCATGTTACAACACCCCTTTGAATTCTCCTCCAAAATTGAACATCTCAACAATGGCCATGAATTCAACTGTTGCAGAATTCTCAACTGATCCTGGTTTTGCAGAAAGAGCTGCAAAATTCTCTTGCTTTGGAAGTAGGAGTTTCAATGGAAGAACAACTCAATTGAGTCAAAGTCAAAGATCTACTCCATTGTTGGAAAATGGAAAACTCTCTAGAGTTTCAAGTAGTCCATCTTTGAAAGAACTTGGATCTCAATCTCAAGAGAATATGAATTGTTCTGCTCAATTGCAGGATCAAATTGAACTTAACAATTCTCAAGAAGAATCAACAATCTCTGAAAATGGTGTGAAACCTTCTCCTTATGTGAATTCAAGGAAAAGAAAAGTTTCTTCCAAAGGAAAAACCAAAGAAACTTCAACTTTTAGTAACCCTCCAATGGTAAGTTAAAAATTGAATTTTTACTTTATTTTATTTGACCCTCTTAATTAAATTAGTCATTTCATATTCTAAATCCAAAAGGGTCATTTTTGTTTTTGCAATATAGGCTTGTGAAGCTGAAGACTCAAATGCAAAGCGCATGAAAACAAATGAAGGTGAAAAAATTGAAAATGGTAAAGTAAAAGCAGAGGAAGAATCAAAAGGGGGTACAAATAGTAATAATGGAGGTGATGAAAAACATAATAAGAGCAATTCAAAACCTCCTGAGGCTCCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTAAGAATTTTCATTGTCATTTTCATTCCATAATTGACACTAACAATCATAGTTTTAAATTGCGATTACGCTGCAAACCTTTTATATTGCCACGATATGTGACAATGTGATAAAATGCGGTTAAAATTGTTGTTGCGAAGACCTCAAAATATGTTATAATATGACCGCAATTGCAGTTGTGGACCACAATTTAAAACCATGTTGACAATATACATGTTAGGTTTTCAATTTTCACATTGTGTAAATTAATTTTTGTTATAGGTTAGGAGGGAGAAAATCAGTGAAAGGATGAAGCTTCTACAAGATCTTGTCCCTGGTTGCAATAAGGTTGGTAATAATTAGATAAATTAAGGATTCAGAATTTGATTGGTTAGTTTGTTTTTACTAATTTTTTTTATGAATTATAATTCCTTCTAGGTTACTGGAAAAGCACTCATGCTTGATGAAATTATAAACTATGTGCAATCATTGCAGCGTCAAGTTGAGGTAAGATAA
Protein sequence

>MS.gene023016.t1

MPTWQSLSSEQQNQDCFYTPIWDKSTTDQCVNQFDSALSSMVSSPAASNSNMSNDNFVIRELIGKLGNIGNCSDEISQTLVAANSYINSNNNTSCYNTPLNSPPKLNISTMAMNSTVAEFSTDPGFAERAAKFSCFGSRSFNGRTTQLSQSQRSTPLLENGKLSRVSSSPSLKELGSQSQENMNCSAQLQDQIELNNSQEESTISENGVKPSPYVNSRKRKVSSKGKTKETSTFSNPPMACEAEDSNAKRMKTNEGEKIENGKVKAEEESKGGTNSNNGGDEKHNKSNSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEVR