Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023093.t1 | ABD33394.2 | 92.3 | 156 | 12 | 0 | 1 | 156 | 443 | 598 | 1.60E-73 | 286.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023093.t1 | Q9SZL8 | 52.1 | 119 | 51 | 3 | 20 | 136 | 63 | 177 | 1.7e-23 | 111.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023093.t1 | Q2HRZ3 | 92.3 | 156 | 12 | 0 | 1 | 156 | 443 | 598 | 1.1e-73 | 286.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene023093.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023093.t1 | MTR_3g006370 | 50.000 | 134 | 67 | 0 | 31 | 164 | 47 | 180 | 2.25e-39 | 137 |
| MS.gene023093.t1 | MTR_4g067290 | 40.876 | 137 | 73 | 3 | 2 | 137 | 28 | 157 | 1.88e-26 | 103 |
| MS.gene023093.t1 | MTR_4g067290 | 42.029 | 138 | 70 | 3 | 2 | 137 | 28 | 157 | 1.90e-26 | 103 |
| MS.gene023093.t1 | MTR_4g067290 | 42.029 | 138 | 70 | 3 | 2 | 137 | 48 | 177 | 2.97e-26 | 103 |
| MS.gene023093.t1 | MTR_4g067290 | 42.029 | 138 | 70 | 3 | 2 | 137 | 48 | 177 | 3.13e-26 | 103 |
| MS.gene023093.t1 | MTR_4g067290 | 42.029 | 138 | 70 | 3 | 2 | 137 | 46 | 175 | 3.30e-26 | 103 |
| MS.gene023093.t1 | MTR_4g067290 | 42.029 | 138 | 70 | 3 | 2 | 137 | 88 | 217 | 4.31e-26 | 104 |
| MS.gene023093.t1 | MTR_2g098920 | 47.706 | 109 | 51 | 2 | 31 | 137 | 77 | 181 | 1.32e-24 | 99.4 |
| MS.gene023093.t1 | MTR_2g098880 | 37.795 | 127 | 71 | 3 | 15 | 138 | 45 | 166 | 1.04e-23 | 96.7 |
| MS.gene023093.t1 | MTR_2g098880 | 37.795 | 127 | 71 | 3 | 15 | 138 | 57 | 178 | 1.56e-23 | 96.7 |
| MS.gene023093.t1 | MTR_2g070590 | 37.500 | 104 | 63 | 2 | 34 | 136 | 17 | 119 | 4.93e-15 | 70.1 |
| MS.gene023093.t1 | MTR_7g053103 | 64.516 | 62 | 12 | 2 | 1 | 62 | 344 | 395 | 1.48e-14 | 73.2 |
| MS.gene023093.t1 | MTR_6g017200 | 37.113 | 97 | 59 | 2 | 34 | 129 | 58 | 153 | 3.25e-12 | 63.5 |
| MS.gene023093.t1 | MTR_0402s0040 | 36.538 | 104 | 64 | 2 | 34 | 136 | 26 | 128 | 4.98e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023093.t1 | AT4G12850 | 61.069 | 131 | 44 | 2 | 29 | 159 | 6 | 129 | 3.83e-48 | 157 |
| MS.gene023093.t1 | AT4G12850 | 68.468 | 111 | 31 | 1 | 29 | 139 | 6 | 112 | 1.90e-47 | 155 |
| MS.gene023093.t1 | AT4G12850 | 68.468 | 111 | 31 | 1 | 29 | 139 | 6 | 112 | 2.26e-47 | 156 |
| MS.gene023093.t1 | AT2G43280 | 42.236 | 161 | 82 | 1 | 33 | 182 | 21 | 181 | 2.65e-37 | 131 |
| MS.gene023093.t1 | AT2G43280 | 41.379 | 145 | 74 | 1 | 49 | 182 | 2 | 146 | 2.00e-32 | 117 |
| MS.gene023093.t1 | AT3G07500 | 49.587 | 121 | 60 | 1 | 33 | 153 | 32 | 151 | 1.26e-31 | 117 |
| MS.gene023093.t1 | AT3G59470 | 50.000 | 114 | 53 | 2 | 25 | 136 | 59 | 170 | 1.17e-27 | 107 |
| MS.gene023093.t1 | AT3G59470 | 50.000 | 114 | 53 | 2 | 25 | 136 | 59 | 170 | 1.17e-27 | 107 |
| MS.gene023093.t1 | AT3G59470 | 50.000 | 114 | 53 | 2 | 25 | 136 | 71 | 182 | 1.40e-27 | 107 |
| MS.gene023093.t1 | AT4G38180 | 51.667 | 120 | 52 | 3 | 20 | 137 | 63 | 178 | 1.24e-25 | 106 |
| MS.gene023093.t1 | AT5G18960 | 44.231 | 104 | 44 | 1 | 33 | 136 | 42 | 131 | 3.67e-19 | 87.4 |
| MS.gene023093.t1 | AT5G18960 | 42.308 | 104 | 46 | 2 | 33 | 136 | 210 | 299 | 1.37e-16 | 79.7 |
| MS.gene023093.t1 | AT5G18960 | 44.231 | 104 | 44 | 1 | 33 | 136 | 42 | 131 | 3.67e-19 | 87.4 |
| MS.gene023093.t1 | AT5G18960 | 42.308 | 104 | 46 | 2 | 33 | 136 | 210 | 299 | 1.37e-16 | 79.7 |
| MS.gene023093.t1 | AT3G06250 | 43.269 | 104 | 45 | 1 | 33 | 136 | 27 | 116 | 1.70e-18 | 85.5 |
| MS.gene023093.t1 | AT3G06250 | 43.269 | 104 | 45 | 2 | 33 | 136 | 189 | 278 | 1.69e-17 | 82.4 |
| MS.gene023093.t1 | AT3G06250 | 43.269 | 104 | 45 | 1 | 33 | 136 | 27 | 116 | 1.70e-18 | 85.5 |
| MS.gene023093.t1 | AT3G06250 | 43.269 | 104 | 45 | 2 | 33 | 136 | 189 | 278 | 1.69e-17 | 82.4 |
| MS.gene023093.t1 | AT3G06250 | 43.269 | 104 | 45 | 1 | 33 | 136 | 27 | 116 | 1.70e-18 | 85.5 |
| MS.gene023093.t1 | AT3G06250 | 43.269 | 104 | 45 | 2 | 33 | 136 | 189 | 278 | 1.69e-17 | 82.4 |
| MS.gene023093.t1 | AT2G32250 | 32.374 | 139 | 86 | 3 | 18 | 154 | 20 | 152 | 3.61e-14 | 72.8 |
| MS.gene023093.t1 | AT2G32250 | 32.374 | 139 | 86 | 3 | 18 | 154 | 20 | 152 | 3.61e-14 | 72.8 |
| MS.gene023093.t1 | AT2G32250 | 32.374 | 139 | 86 | 3 | 18 | 154 | 20 | 152 | 3.61e-14 | 72.8 |
| MS.gene023093.t1 | AT2G32250 | 32.374 | 139 | 86 | 3 | 18 | 154 | 20 | 152 | 3.61e-14 | 72.8 |
| MS.gene023093.t1 | AT2G32250 | 32.374 | 139 | 86 | 3 | 18 | 154 | 20 | 152 | 3.61e-14 | 72.8 |
| MS.gene023093.t1 | AT2G32250 | 32.374 | 139 | 86 | 3 | 18 | 154 | 20 | 152 | 4.08e-14 | 72.4 |
| MS.gene023093.t1 | AT4G12850 | 66.667 | 42 | 14 | 0 | 29 | 70 | 6 | 47 | 7.35e-14 | 65.1 |
| MS.gene023093.t1 | AT4G15090 | 33.913 | 115 | 74 | 2 | 33 | 146 | 50 | 163 | 2.05e-13 | 70.5 |
| MS.gene023093.t1 | AT4G15090 | 33.913 | 115 | 74 | 2 | 33 | 146 | 50 | 163 | 2.05e-13 | 70.5 |
| MS.gene023093.t1 | AT4G15090 | 33.913 | 115 | 74 | 2 | 33 | 146 | 50 | 163 | 2.05e-13 | 70.5 |
| MS.gene023093.t1 | AT4G15090 | 33.913 | 115 | 74 | 2 | 33 | 146 | 50 | 163 | 2.05e-13 | 70.5 |
| MS.gene023093.t1 | AT4G15090 | 33.913 | 115 | 74 | 2 | 33 | 146 | 50 | 163 | 2.05e-13 | 70.5 |
| MS.gene023093.t1 | AT2G32250 | 33.333 | 117 | 72 | 2 | 38 | 154 | 1 | 111 | 2.44e-13 | 70.1 |
| MS.gene023093.t1 | AT2G32250 | 33.333 | 117 | 72 | 2 | 38 | 154 | 1 | 111 | 2.60e-13 | 70.1 |
| MS.gene023093.t1 | AT2G27110 | 30.833 | 120 | 67 | 2 | 19 | 138 | 34 | 137 | 9.12e-13 | 68.6 |
| MS.gene023093.t1 | AT2G27110 | 30.833 | 120 | 67 | 2 | 19 | 138 | 34 | 137 | 9.12e-13 | 68.6 |
| MS.gene023093.t1 | AT1G76320 | 35.354 | 99 | 60 | 1 | 38 | 136 | 1 | 95 | 1.07e-11 | 65.1 |
| MS.gene023093.t1 | AT1G76320 | 35.354 | 99 | 60 | 1 | 38 | 136 | 1 | 95 | 1.09e-11 | 65.1 |
| MS.gene023093.t1 | AT1G76320 | 35.354 | 99 | 60 | 1 | 38 | 136 | 1 | 95 | 1.09e-11 | 65.1 |
| MS.gene023093.t1 | AT1G76320 | 35.354 | 99 | 60 | 1 | 38 | 136 | 1 | 95 | 1.13e-11 | 65.1 |
| MS.gene023093.t1 | AT4G19990 | 30.769 | 143 | 77 | 4 | 13 | 136 | 10 | 149 | 4.03e-11 | 63.5 |
| MS.gene023093.t1 | AT4G19990 | 32.000 | 125 | 70 | 3 | 24 | 136 | 14 | 135 | 7.93e-11 | 62.8 |
| MS.gene023093.t1 | AT4G19990 | 32.000 | 125 | 70 | 3 | 24 | 136 | 14 | 135 | 8.38e-11 | 62.4 |
| MS.gene023093.t1 | AT4G19990 | 32.000 | 125 | 70 | 3 | 24 | 136 | 14 | 135 | 8.38e-11 | 62.4 |
| MS.gene023093.t1 | AT4G19990 | 32.000 | 125 | 70 | 3 | 24 | 136 | 14 | 135 | 8.45e-11 | 62.4 |
| MS.gene023093.t1 | AT4G19990 | 32.000 | 125 | 70 | 3 | 24 | 136 | 14 | 135 | 8.45e-11 | 62.4 |
| MS.gene023093.t1 | AT3G22170 | 31.250 | 128 | 75 | 3 | 21 | 136 | 58 | 184 | 8.71e-11 | 62.4 |
| MS.gene023093.t1 | AT3G22170 | 31.250 | 128 | 75 | 3 | 21 | 136 | 58 | 184 | 8.71e-11 | 62.4 |
Find 62 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAATGTTCCCTTGCTATT+TGG | 0.143180 | 7.3:-53042715 | None:intergenic |
| CCTCTAACTGCCATAGTTAA+TGG | 0.164800 | 7.3:+53042853 | MS.gene023093:CDS |
| CTGCCATAGTTAATGGTTTC+AGG | 0.184902 | 7.3:+53042860 | MS.gene023093:CDS |
| TCTGTGCCGCTCCGCGCAGC+TGG | 0.243531 | 7.3:-53043603 | None:intergenic |
| AGGTTGCATGGCAACAATTT+TGG | 0.264590 | 7.3:+53042771 | MS.gene023093:CDS |
| AACTCACTTACATGAAAATA+AGG | 0.292662 | 7.3:-53043022 | None:intergenic |
| ATATTCAGCATAAAACTTCT+TGG | 0.311736 | 7.3:-53042587 | None:intergenic |
| TCAACTACTTCTGATGTATA+TGG | 0.315659 | 7.3:-53043341 | None:intergenic |
| AGAAGAGAGCACACATATAT+TGG | 0.339545 | 7.3:+53042507 | MS.gene023093:CDS |
| GCGGGAGAGGTTGCTATTGT+GGG | 0.348569 | 7.3:+53043637 | MS.gene023093:CDS |
| CTGTGCCGCTCCGCGCAGCT+GGG | 0.379009 | 7.3:-53043602 | None:intergenic |
| CCTTCTCGTGCACTAGGCCT+TGG | 0.392893 | 7.3:-53042751 | None:intergenic |
| AGCGGTGAAACCCCTAAAAC+AGG | 0.414875 | 7.3:+53043671 | MS.gene023093:CDS |
| TTACATGAAAATAAGGAAAC+AGG | 0.423317 | 7.3:-53043015 | None:intergenic |
| TCTTATGGATTCTGTGGTAG+TGG | 0.430837 | 7.3:+53042447 | None:intergenic |
| CCATTAACTATGGCAGTTAG+AGG | 0.431747 | 7.3:-53042853 | None:intergenic |
| TGTCCTGAAACCATTAACTA+TGG | 0.437750 | 7.3:-53042863 | None:intergenic |
| ACCAAATAGCAAGGGAACAT+TGG | 0.440465 | 7.3:+53042714 | MS.gene023093:CDS |
| CCAAATAGCAAGGGAACATT+GGG | 0.442775 | 7.3:+53042715 | MS.gene023093:CDS |
| GGCGGGAGAGGTTGCTATTG+TGG | 0.443747 | 7.3:+53043636 | MS.gene023093:CDS |
| GGGGTTTCACCGCTCCAAAC+TGG | 0.446018 | 7.3:-53043662 | None:intergenic |
| TCTAACTCCATGCCCACATA+TGG | 0.448207 | 7.3:-53042550 | None:intergenic |
| CGTAGACGATCTGGAATTGA+TGG | 0.457844 | 7.3:+53042646 | MS.gene023093:CDS |
| TTTCAACTATAAAGCGGAAA+AGG | 0.469578 | 7.3:-53043704 | None:intergenic |
| GCTGCGCGGAGCGGCACAGA+AGG | 0.498650 | 7.3:+53043606 | MS.gene023093:CDS |
| GAAGGACAATGCGGCGGGAG+AGG | 0.501341 | 7.3:+53043624 | MS.gene023093:CDS |
| GACATTTAGATGTTGTGCAT+TGG | 0.514049 | 7.3:+53043509 | MS.gene023093:CDS |
| ATGCAACCTTCTCGTGCACT+AGG | 0.514269 | 7.3:-53042757 | None:intergenic |
| TTATGCTGAATATGCTAGAC+GGG | 0.518296 | 7.3:+53042597 | MS.gene023093:CDS |
| ATCGCGGCGCGGTAAAATTG+AGG | 0.524249 | 7.3:+53043571 | MS.gene023093:CDS |
| GCACAGAAGGACAATGCGGC+GGG | 0.525803 | 7.3:+53043619 | MS.gene023093:CDS |
| GTTATGCAACGTAGACGATC+TGG | 0.528818 | 7.3:+53042637 | MS.gene023093:CDS |
| TTTAGATGTTGTGCATTGGA+TGG | 0.542044 | 7.3:+53043513 | MS.gene023093:CDS |
| GGATTCAGACAAGGGAAATG+AGG | 0.564058 | 7.3:+53042468 | MS.gene023093:CDS |
| GACGATCTGGAATTGATGGC+AGG | 0.564371 | 7.3:+53042650 | MS.gene023093:CDS |
| GCTGAATATGCTAGACGGGT+AGG | 0.564964 | 7.3:+53042601 | MS.gene023093:CDS |
| GAGAGCACACATATATTGGA+TGG | 0.565400 | 7.3:+53042511 | MS.gene023093:CDS |
| GGAAACTATGTTATCAAAAG+CGG | 0.575841 | 7.3:+53043534 | MS.gene023093:CDS |
| TCAAGAGCCATATGTGGGCA+TGG | 0.577246 | 7.3:+53042543 | MS.gene023093:CDS |
| TAACTATGGCAGTTAGAGGA+TGG | 0.578331 | 7.3:-53042849 | None:intergenic |
| CTGCTCCCAGCTGCGCGGAG+CGG | 0.579917 | 7.3:+53043597 | MS.gene023093:CDS |
| TGAACTTCAAGAGCCATATG+TGG | 0.585856 | 7.3:+53042537 | MS.gene023093:CDS |
| AGGATTCTCACCAAATAGCA+AGG | 0.586863 | 7.3:+53042705 | MS.gene023093:CDS |
| CGGGAGAGGTTGCTATTGTG+GGG | 0.608473 | 7.3:+53043638 | MS.gene023093:CDS |
| GGCACAGAAGGACAATGCGG+CGG | 0.609446 | 7.3:+53043618 | MS.gene023093:CDS |
| CGACTTCGATGTAACAAACA+AGG | 0.610365 | 7.3:+53042685 | MS.gene023093:CDS |
| GCAGATTCTTATGGATTCTG+TGG | 0.610998 | 7.3:+53042441 | None:intergenic |
| TTTATGCTGAATATGCTAGA+CGG | 0.611450 | 7.3:+53042596 | MS.gene023093:CDS |
| GGCTATAGCAGCCTCTATCG+CGG | 0.629764 | 7.3:+53043555 | MS.gene023093:CDS |
| CCAAGGCCTAGTGCACGAGA+AGG | 0.635511 | 7.3:+53042751 | MS.gene023093:CDS |
| AGTTAATGGTTTCAGGACAG+AGG | 0.640431 | 7.3:+53042867 | MS.gene023093:CDS |
| GAACTTCAAGAGCCATATGT+GGG | 0.645554 | 7.3:+53042538 | MS.gene023093:CDS |
| TAGTGCACGAGAAGGTTGCA+TGG | 0.650503 | 7.3:+53042759 | MS.gene023093:CDS |
| GCGGTGAAACCCCTAAAACA+GGG | 0.653276 | 7.3:+53043672 | MS.gene023093:CDS |
| GGGAGAGGTTGCTATTGTGG+GGG | 0.654032 | 7.3:+53043639 | MS.gene023093:CDS |
| GGATTCTCACCAAATAGCAA+GGG | 0.654395 | 7.3:+53042706 | MS.gene023093:CDS |
| TGTGGTAGTGGATTCAGACA+AGG | 0.656451 | 7.3:+53042459 | MS.gene023093:CDS |
| GTGGTAGTGGATTCAGACAA+GGG | 0.661730 | 7.3:+53042460 | MS.gene023093:CDS |
| CTTTCACTATGTCTGTTGTG+TGG | 0.663929 | 7.3:+53043378 | MS.gene023093:CDS |
| GGTTACTGCTCCCAGCTGCG+CGG | 0.679569 | 7.3:+53043592 | MS.gene023093:CDS |
| TAGCAGCCTCTATCGCGGCG+CGG | 0.682340 | 7.3:+53043560 | MS.gene023093:CDS |
| AGCGGCACAGAAGGACAATG+CGG | 0.709740 | 7.3:+53043615 | MS.gene023093:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTGAAAAAAGTAGAAAAA+TGG | + | chr7.3:53043719-53043738 | MS.gene023093:CDS | 20.0% |
| !! | GTCTTAGAAACTAATAAATA+AGG | + | chr7.3:53043261-53043280 | MS.gene023093:intron | 20.0% |
| !! | GTTGAAAAAAGTAGAAAAAT+GGG | + | chr7.3:53043720-53043739 | MS.gene023093:CDS | 20.0% |
| !!! | ATTTTGATTTTGCATAACTA+AGG | + | chr7.3:53043182-53043201 | MS.gene023093:intron | 20.0% |
| !!! | TACTTTTTTCAACTATAAAG+CGG | - | chr7.3:53043713-53043732 | None:intergenic | 20.0% |
| !!! | TTGTCATTTTATTACTTAGT+CGG | + | chr7.3:53043478-53043497 | MS.gene023093:intron | 20.0% |
| ! | AACTCACTTACATGAAAATA+AGG | - | chr7.3:53043025-53043044 | None:intergenic | 25.0% |
| ! | ATAACTTTAATTGCTGGATA+TGG | + | chr7.3:53043085-53043104 | MS.gene023093:intron | 25.0% |
| ! | ATATTCAGCATAAAACTTCT+TGG | - | chr7.3:53042590-53042609 | None:intergenic | 25.0% |
| ! | TTACATGAAAATAAGGAAAC+AGG | - | chr7.3:53043018-53043037 | None:intergenic | 25.0% |
| !!! | TGTCATTTTATTACTTAGTC+GGG | + | chr7.3:53043479-53043498 | MS.gene023093:intron | 25.0% |
| AAAAGTAGAAAAATGGGAGT+AGG | + | chr7.3:53043726-53043745 | MS.gene023093:CDS | 30.0% | |
| AGATGGAAAAATCTGGAAAA+TGG | + | chr7.3:53042797-53042816 | MS.gene023093:CDS | 30.0% | |
| CTGGATATGGTAATTTCAAT+AGG | + | chr7.3:53043098-53043117 | MS.gene023093:intron | 30.0% | |
| GATGGAAAAATCTGGAAAAT+GGG | + | chr7.3:53042798-53042817 | MS.gene023093:CDS | 30.0% | |
| GGAAACTATGTTATCAAAAG+CGG | + | chr7.3:53043534-53043553 | MS.gene023093:CDS | 30.0% | |
| TCAACTACTTCTGATGTATA+TGG | - | chr7.3:53043344-53043363 | None:intergenic | 30.0% | |
| TTGGTTAAGATGGAAAAATC+TGG | + | chr7.3:53042790-53042809 | MS.gene023093:CDS | 30.0% | |
| TTTATGCTGAATATGCTAGA+CGG | + | chr7.3:53042596-53042615 | MS.gene023093:CDS | 30.0% | |
| TTTCAACTATAAAGCGGAAA+AGG | - | chr7.3:53043707-53043726 | None:intergenic | 30.0% | |
| ! | ATGAACAACTCGGAAAATTT+TGG | + | chr7.3:53043407-53043426 | MS.gene023093:intron | 30.0% |
| ! | TGAACAACTCGGAAAATTTT+GGG | + | chr7.3:53043408-53043427 | MS.gene023093:intron | 30.0% |
| !! | GAAAATTTTGGGTAAGTAGA+GGG | + | chr7.3:53043419-53043438 | MS.gene023093:intron | 30.0% |
| AATGTATCATGTCATGTCTC+AGG | - | chr7.3:53043147-53043166 | None:intergenic | 35.0% | |
| AGGGAATAAAAGGATGAAGA+GGG | + | chr7.3:53043438-53043457 | MS.gene023093:intron | 35.0% | |
| CGAAGATCTACTTAAACAAG+TGG | - | chr7.3:53042937-53042956 | None:intergenic | 35.0% | |
| CTGCTGATAACTTTAATTGC+TGG | + | chr7.3:53043079-53043098 | MS.gene023093:intron | 35.0% | |
| GACATTTAGATGTTGTGCAT+TGG | + | chr7.3:53043509-53043528 | MS.gene023093:CDS | 35.0% | |
| GTGGTAATCAATGAACAACT+CGG | + | chr7.3:53043397-53043416 | MS.gene023093:intron | 35.0% | |
| TGGGAAAAGAAAAAAGACCA+AGG | + | chr7.3:53042734-53042753 | MS.gene023093:CDS | 35.0% | |
| TGTCCTGAAACCATTAACTA+TGG | - | chr7.3:53042866-53042885 | None:intergenic | 35.0% | |
| TTATGCTGAATATGCTAGAC+GGG | + | chr7.3:53042597-53042616 | MS.gene023093:CDS | 35.0% | |
| TTCATAAAAAAAGACCCGTG+AGG | - | chr7.3:53043208-53043227 | None:intergenic | 35.0% | |
| TTGTATGCATACAAGAACTG+TGG | + | chr7.3:53043050-53043069 | MS.gene023093:intron | 35.0% | |
| TTTAGATGTTGTGCATTGGA+TGG | + | chr7.3:53043513-53043532 | MS.gene023093:CDS | 35.0% | |
| ! | AGAAGAGAGCACACATATAT+TGG | + | chr7.3:53042507-53042526 | MS.gene023093:CDS | 35.0% |
| !! | GGAAAATTTTGGGTAAGTAG+AGG | + | chr7.3:53043418-53043437 | MS.gene023093:intron | 35.0% |
| !! | GTAGATCTTCGTTGTTTCTT+AGG | + | chr7.3:53042946-53042965 | MS.gene023093:intron | 35.0% |
| !!! | GGCAACAATTTTGGTTAAGA+TGG | + | chr7.3:53042780-53042799 | MS.gene023093:CDS | 35.0% |
| ACCAAATAGCAAGGGAACAT+TGG | + | chr7.3:53042714-53042733 | MS.gene023093:CDS | 40.0% | |
| AGGATTCTCACCAAATAGCA+AGG | + | chr7.3:53042705-53042724 | MS.gene023093:CDS | 40.0% | |
| AGTTAATGGTTTCAGGACAG+AGG | + | chr7.3:53042867-53042886 | MS.gene023093:CDS | 40.0% | |
| CCAAATAGCAAGGGAACATT+GGG | + | chr7.3:53042715-53042734 | MS.gene023093:CDS | 40.0% | |
| CCATTAACTATGGCAGTTAG+AGG | - | chr7.3:53042856-53042875 | None:intergenic | 40.0% | |
| CCTCTAACTGCCATAGTTAA+TGG | + | chr7.3:53042853-53042872 | MS.gene023093:CDS | 40.0% | |
| CGACTTCGATGTAACAAACA+AGG | + | chr7.3:53042685-53042704 | MS.gene023093:CDS | 40.0% | |
| CTGCCATAGTTAATGGTTTC+AGG | + | chr7.3:53042860-53042879 | MS.gene023093:CDS | 40.0% | |
| CTTTCACTATGTCTGTTGTG+TGG | + | chr7.3:53043378-53043397 | MS.gene023093:CDS | 40.0% | |
| GAACTTCAAGAGCCATATGT+GGG | + | chr7.3:53042538-53042557 | MS.gene023093:CDS | 40.0% | |
| GAGGGAATAAAAGGATGAAG+AGG | + | chr7.3:53043437-53043456 | MS.gene023093:intron | 40.0% | |
| GCATGAACTCTAGCATAACA+TGG | + | chr7.3:53042968-53042987 | MS.gene023093:intron | 40.0% | |
| GGATTCTCACCAAATAGCAA+GGG | + | chr7.3:53042706-53042725 | MS.gene023093:CDS | 40.0% | |
| GGGTAAGTAGAGGGAATAAA+AGG | + | chr7.3:53043428-53043447 | MS.gene023093:intron | 40.0% | |
| TAACTATGGCAGTTAGAGGA+TGG | - | chr7.3:53042852-53042871 | None:intergenic | 40.0% | |
| TGAACTTCAAGAGCCATATG+TGG | + | chr7.3:53042537-53042556 | MS.gene023093:CDS | 40.0% | |
| TTTGCATAACTAAGGCCTCA+CGG | + | chr7.3:53043190-53043209 | MS.gene023093:intron | 40.0% | |
| TTTGCTTGTCATATCCCCTA+GGG | - | chr7.3:53043321-53043340 | None:intergenic | 40.0% | |
| ! | AGGTTGCATGGCAACAATTT+TGG | + | chr7.3:53042771-53042790 | MS.gene023093:CDS | 40.0% |
| ! | GAGAGCACACATATATTGGA+TGG | + | chr7.3:53042511-53042530 | MS.gene023093:CDS | 40.0% |
| AAGAGGGTTGAGAGAGAAAC+AGG | + | chr7.3:53043454-53043473 | MS.gene023093:intron | 45.0% | |
| ATCATGTCATGTCTCAGGCT+AGG | - | chr7.3:53043142-53043161 | None:intergenic | 45.0% | |
| GGATTCAGACAAGGGAAATG+AGG | + | chr7.3:53042468-53042487 | MS.gene023093:CDS | 45.0% | |
| GTTATGCAACGTAGACGATC+TGG | + | chr7.3:53042637-53042656 | MS.gene023093:CDS | 45.0% | |
| GTTTGCTTGTCATATCCCCT+AGG | - | chr7.3:53043322-53043341 | None:intergenic | 45.0% | |
| TCATGTCATGTCTCAGGCTA+GGG | - | chr7.3:53043141-53043160 | None:intergenic | 45.0% | |
| TCTAACTCCATGCCCACATA+TGG | - | chr7.3:53042553-53042572 | None:intergenic | 45.0% | |
| TTGCATAACTAAGGCCTCAC+GGG | + | chr7.3:53043191-53043210 | MS.gene023093:intron | 45.0% | |
| ! | CGTAGACGATCTGGAATTGA+TGG | + | chr7.3:53042646-53042665 | MS.gene023093:CDS | 45.0% |
| ! | GTAGCTAGAGCCCTGTTTTA+GGG | - | chr7.3:53043685-53043704 | None:intergenic | 45.0% |
| !! | ACTTTGATTTGATGCGCCCT+AGG | + | chr7.3:53043302-53043321 | MS.gene023093:intron | 45.0% |
| !! | CCCAATGTTCCCTTGCTATT+TGG | - | chr7.3:53042718-53042737 | None:intergenic | 45.0% |
| !! | CTTTGATTTGATGCGCCCTA+GGG | + | chr7.3:53043303-53043322 | MS.gene023093:intron | 45.0% |
| !! | GTGGTAGTGGATTCAGACAA+GGG | + | chr7.3:53042460-53042479 | MS.gene023093:CDS | 45.0% |
| !! | TAGCTAGAGCCCTGTTTTAG+GGG | - | chr7.3:53043684-53043703 | None:intergenic | 45.0% |
| !! | TGTGGTAGTGGATTCAGACA+AGG | + | chr7.3:53042459-53042478 | MS.gene023093:CDS | 45.0% |
| !! | TTTGATTTGATGCGCCCTAG+GGG | + | chr7.3:53043304-53043323 | MS.gene023093:intron | 45.0% |
| AGCGGTGAAACCCCTAAAAC+AGG | + | chr7.3:53043671-53043690 | MS.gene023093:CDS | 50.0% | |
| ATGCAACCTTCTCGTGCACT+AGG | - | chr7.3:53042760-53042779 | None:intergenic | 50.0% | |
| GCGGTGAAACCCCTAAAACA+GGG | + | chr7.3:53043672-53043691 | MS.gene023093:CDS | 50.0% | |
| GCTGAATATGCTAGACGGGT+AGG | + | chr7.3:53042601-53042620 | MS.gene023093:CDS | 50.0% | |
| TAGTGCACGAGAAGGTTGCA+TGG | + | chr7.3:53042759-53042778 | MS.gene023093:CDS | 50.0% | |
| TCAAGAGCCATATGTGGGCA+TGG | + | chr7.3:53042543-53042562 | MS.gene023093:CDS | 50.0% | |
| ! | GACGATCTGGAATTGATGGC+AGG | + | chr7.3:53042650-53042669 | MS.gene023093:CDS | 50.0% |
| ! | GGTAGCTAGAGCCCTGTTTT+AGG | - | chr7.3:53043686-53043705 | None:intergenic | 50.0% |
| AGCGGCACAGAAGGACAATG+CGG | + | chr7.3:53043615-53043634 | MS.gene023093:CDS | 55.0% | |
| ATCGCGGCGCGGTAAAATTG+AGG | + | chr7.3:53043571-53043590 | MS.gene023093:CDS | 55.0% | |
| GGCTATAGCAGCCTCTATCG+CGG | + | chr7.3:53043555-53043574 | MS.gene023093:CDS | 55.0% | |
| TGCTATTGTGGGGGCCAGTT+TGG | + | chr7.3:53043648-53043667 | MS.gene023093:CDS | 55.0% | |
| ! | ATTTTACCGCGCCGCGATAG+AGG | - | chr7.3:53043569-53043588 | None:intergenic | 55.0% |
| ! | CGGGAGAGGTTGCTATTGTG+GGG | + | chr7.3:53043638-53043657 | MS.gene023093:CDS | 55.0% |
| ! | GCGGGAGAGGTTGCTATTGT+GGG | + | chr7.3:53043637-53043656 | MS.gene023093:CDS | 55.0% |
| ! | GGGAGAGGTTGCTATTGTGG+GGG | + | chr7.3:53043639-53043658 | MS.gene023093:CDS | 55.0% |
| CCAAGGCCTAGTGCACGAGA+AGG | + | chr7.3:53042751-53042770 | MS.gene023093:CDS | 60.0% | |
| CCTTCTCGTGCACTAGGCCT+TGG | - | chr7.3:53042754-53042773 | None:intergenic | 60.0% | |
| GCACAGAAGGACAATGCGGC+GGG | + | chr7.3:53043619-53043638 | MS.gene023093:CDS | 60.0% | |
| GGCACAGAAGGACAATGCGG+CGG | + | chr7.3:53043618-53043637 | MS.gene023093:CDS | 60.0% | |
| GGGGTTTCACCGCTCCAAAC+TGG | - | chr7.3:53043665-53043684 | None:intergenic | 60.0% | |
| TTGTGGGGGCCAGTTTGGAG+CGG | + | chr7.3:53043653-53043672 | MS.gene023093:CDS | 60.0% | |
| ! | GGCGGGAGAGGTTGCTATTG+TGG | + | chr7.3:53043636-53043655 | MS.gene023093:CDS | 60.0% |
| GAAGGACAATGCGGCGGGAG+AGG | + | chr7.3:53043624-53043643 | MS.gene023093:CDS | 65.0% | |
| GGTTACTGCTCCCAGCTGCG+CGG | + | chr7.3:53043592-53043611 | MS.gene023093:CDS | 65.0% | |
| TAGCAGCCTCTATCGCGGCG+CGG | + | chr7.3:53043560-53043579 | MS.gene023093:CDS | 65.0% | |
| CTGCTCCCAGCTGCGCGGAG+CGG | + | chr7.3:53043597-53043616 | MS.gene023093:CDS | 75.0% | |
| GCTGCGCGGAGCGGCACAGA+AGG | + | chr7.3:53043606-53043625 | MS.gene023093:CDS | 75.0% | |
| ! | CTGTGCCGCTCCGCGCAGCT+GGG | - | chr7.3:53043605-53043624 | None:intergenic | 75.0% |
| ! | TCTGTGCCGCTCCGCGCAGC+TGG | - | chr7.3:53043606-53043625 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 53042451 | 53043758 | 53042451 | ID=MS.gene023093 |
| chr7.3 | mRNA | 53042451 | 53043758 | 53042451 | ID=MS.gene023093.t1;Parent=MS.gene023093 |
| chr7.3 | exon | 53042451 | 53042888 | 53042451 | ID=MS.gene023093.t1.exon1;Parent=MS.gene023093.t1 |
| chr7.3 | CDS | 53042451 | 53042888 | 53042451 | ID=cds.MS.gene023093.t1;Parent=MS.gene023093.t1 |
| chr7.3 | exon | 53042997 | 53043033 | 53042997 | ID=MS.gene023093.t1.exon2;Parent=MS.gene023093.t1 |
| chr7.3 | CDS | 53042997 | 53043033 | 53042997 | ID=cds.MS.gene023093.t1;Parent=MS.gene023093.t1 |
| chr7.3 | exon | 53043324 | 53043399 | 53043324 | ID=MS.gene023093.t1.exon3;Parent=MS.gene023093.t1 |
| chr7.3 | CDS | 53043324 | 53043399 | 53043324 | ID=cds.MS.gene023093.t1;Parent=MS.gene023093.t1 |
| chr7.3 | exon | 53043497 | 53043758 | 53043497 | ID=MS.gene023093.t1.exon4;Parent=MS.gene023093.t1 |
| chr7.3 | CDS | 53043497 | 53043758 | 53043497 | ID=cds.MS.gene023093.t1;Parent=MS.gene023093.t1 |
| Gene Sequence |
| Protein sequence |
