Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023183.t1 | RHN81411.1 | 53.3 | 758 | 148 | 3 | 13 | 600 | 35 | 756 | 2.20E-208 | 735.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023183.t1 | Q9SY66 | 39.3 | 501 | 199 | 6 | 73 | 475 | 60 | 553 | 7.7e-93 | 342.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023183.t1 | A0A396JX52 | 53.3 | 758 | 148 | 3 | 13 | 600 | 35 | 756 | 1.6e-208 | 735.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene023183.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023183.t1 | MTR_3g450850 | 68.266 | 271 | 85 | 1 | 31 | 300 | 16 | 286 | 2.81e-130 | 386 |
| MS.gene023183.t1 | MTR_4g035820 | 34.669 | 499 | 254 | 7 | 60 | 556 | 74 | 502 | 2.92e-80 | 266 |
| MS.gene023183.t1 | MTR_3g012160 | 81.522 | 92 | 17 | 0 | 210 | 301 | 2 | 93 | 1.28e-45 | 156 |
| MS.gene023183.t1 | MTR_4g071400 | 94.937 | 79 | 4 | 0 | 477 | 555 | 43 | 121 | 4.68e-43 | 150 |
| MS.gene023183.t1 | MTR_1g070355 | 32.669 | 251 | 149 | 7 | 61 | 305 | 72 | 308 | 1.33e-28 | 120 |
| MS.gene023183.t1 | MTR_5g076070 | 27.917 | 240 | 157 | 7 | 64 | 300 | 56 | 282 | 5.30e-24 | 102 |
| MS.gene023183.t1 | MTR_3g095940 | 72.222 | 54 | 15 | 0 | 417 | 470 | 90 | 143 | 3.22e-19 | 85.1 |
| MS.gene023183.t1 | MTR_6g051425 | 25.000 | 264 | 183 | 6 | 62 | 319 | 18 | 272 | 1.33e-18 | 87.8 |
| MS.gene023183.t1 | MTR_6g014355 | 37.162 | 148 | 89 | 3 | 142 | 287 | 14 | 159 | 6.79e-17 | 80.9 |
| MS.gene023183.t1 | MTR_5g083630 | 54.286 | 70 | 26 | 1 | 204 | 267 | 7 | 76 | 1.20e-16 | 76.6 |
| MS.gene023183.t1 | MTR_6g022080 | 30.909 | 165 | 97 | 6 | 72 | 232 | 96 | 247 | 3.41e-14 | 73.2 |
| MS.gene023183.t1 | MTR_0558s0020 | 24.907 | 269 | 167 | 8 | 66 | 312 | 41 | 296 | 5.07e-14 | 73.6 |
| MS.gene023183.t1 | MTR_8g446020 | 26.531 | 196 | 124 | 5 | 126 | 312 | 72 | 256 | 1.22e-12 | 68.6 |
| MS.gene023183.t1 | MTR_1g019850 | 30.000 | 140 | 80 | 3 | 67 | 205 | 76 | 198 | 9.22e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023183.t1 | AT5G28530 | 34.497 | 487 | 260 | 9 | 31 | 473 | 27 | 498 | 1.68e-89 | 290 |
| MS.gene023183.t1 | AT5G28530 | 34.292 | 487 | 265 | 9 | 31 | 473 | 27 | 502 | 7.06e-89 | 288 |
| MS.gene023183.t1 | AT5G28530 | 44.558 | 294 | 144 | 3 | 31 | 314 | 27 | 311 | 8.66e-76 | 255 |
| MS.gene023183.t1 | AT5G28530 | 35.294 | 153 | 97 | 1 | 321 | 473 | 415 | 565 | 4.85e-27 | 116 |
| MS.gene023183.t1 | AT5G28530 | 44.558 | 294 | 144 | 3 | 31 | 314 | 27 | 311 | 1.30e-75 | 254 |
| MS.gene023183.t1 | AT5G28530 | 35.948 | 153 | 92 | 1 | 321 | 473 | 415 | 561 | 1.70e-27 | 118 |
| MS.gene023183.t1 | AT5G28530 | 44.558 | 294 | 144 | 3 | 31 | 314 | 27 | 311 | 1.30e-75 | 254 |
| MS.gene023183.t1 | AT5G28530 | 35.948 | 153 | 92 | 1 | 321 | 473 | 415 | 561 | 1.70e-27 | 118 |
| MS.gene023183.t1 | AT1G10240 | 46.715 | 274 | 134 | 5 | 48 | 315 | 30 | 297 | 1.36e-71 | 243 |
| MS.gene023183.t1 | AT1G10240 | 48.447 | 161 | 82 | 1 | 315 | 475 | 394 | 553 | 4.14e-45 | 170 |
| MS.gene023183.t1 | AT1G10240 | 46.715 | 274 | 134 | 5 | 48 | 315 | 30 | 297 | 1.36e-71 | 243 |
| MS.gene023183.t1 | AT1G10240 | 48.447 | 161 | 82 | 1 | 315 | 475 | 394 | 553 | 4.14e-45 | 170 |
| MS.gene023183.t1 | AT4G38180 | 27.953 | 254 | 171 | 4 | 61 | 312 | 73 | 316 | 3.80e-21 | 98.6 |
| MS.gene023183.t1 | AT4G38180 | 29.032 | 155 | 110 | 0 | 319 | 473 | 420 | 574 | 8.14e-14 | 75.1 |
| MS.gene023183.t1 | AT4G15090 | 34.127 | 126 | 83 | 0 | 322 | 447 | 399 | 524 | 6.06e-17 | 85.1 |
| MS.gene023183.t1 | AT4G15090 | 26.154 | 260 | 172 | 8 | 61 | 315 | 51 | 295 | 1.12e-14 | 78.2 |
| MS.gene023183.t1 | AT4G15090 | 34.127 | 126 | 83 | 0 | 322 | 447 | 399 | 524 | 6.06e-17 | 85.1 |
| MS.gene023183.t1 | AT4G15090 | 26.154 | 260 | 172 | 8 | 61 | 315 | 51 | 295 | 1.12e-14 | 78.2 |
| MS.gene023183.t1 | AT4G15090 | 34.127 | 126 | 83 | 0 | 322 | 447 | 399 | 524 | 6.06e-17 | 85.1 |
| MS.gene023183.t1 | AT4G15090 | 26.154 | 260 | 172 | 8 | 61 | 315 | 51 | 295 | 1.12e-14 | 78.2 |
| MS.gene023183.t1 | AT4G15090 | 34.127 | 126 | 83 | 0 | 322 | 447 | 399 | 524 | 6.06e-17 | 85.1 |
| MS.gene023183.t1 | AT4G15090 | 26.154 | 260 | 172 | 8 | 61 | 315 | 51 | 295 | 1.12e-14 | 78.2 |
| MS.gene023183.t1 | AT4G15090 | 34.127 | 126 | 83 | 0 | 322 | 447 | 399 | 524 | 6.06e-17 | 85.1 |
| MS.gene023183.t1 | AT4G15090 | 26.154 | 260 | 172 | 8 | 61 | 315 | 51 | 295 | 1.12e-14 | 78.2 |
| MS.gene023183.t1 | AT3G22170 | 33.594 | 128 | 81 | 2 | 322 | 447 | 408 | 533 | 1.38e-15 | 80.9 |
| MS.gene023183.t1 | AT3G22170 | 33.594 | 128 | 81 | 2 | 322 | 447 | 408 | 533 | 1.38e-15 | 80.9 |
| MS.gene023183.t1 | AT1G76320 | 27.626 | 257 | 151 | 11 | 67 | 315 | 3 | 232 | 2.14e-12 | 70.5 |
| MS.gene023183.t1 | AT1G76320 | 26.316 | 133 | 98 | 0 | 315 | 447 | 329 | 461 | 1.11e-11 | 68.2 |
| MS.gene023183.t1 | AT1G76320 | 27.626 | 257 | 151 | 11 | 67 | 315 | 3 | 232 | 2.16e-12 | 70.5 |
| MS.gene023183.t1 | AT1G76320 | 26.316 | 133 | 98 | 0 | 315 | 447 | 329 | 461 | 1.12e-11 | 68.2 |
| MS.gene023183.t1 | AT1G76320 | 27.626 | 257 | 151 | 11 | 67 | 315 | 3 | 232 | 2.16e-12 | 70.5 |
| MS.gene023183.t1 | AT1G76320 | 26.316 | 133 | 98 | 0 | 315 | 447 | 329 | 461 | 1.12e-11 | 68.2 |
| MS.gene023183.t1 | AT1G76320 | 27.626 | 257 | 151 | 11 | 67 | 315 | 3 | 232 | 3.15e-12 | 70.1 |
| MS.gene023183.t1 | AT1G76320 | 26.316 | 133 | 98 | 0 | 315 | 447 | 329 | 461 | 1.00e-11 | 68.6 |
| MS.gene023183.t1 | AT4G19990 | 27.559 | 127 | 92 | 0 | 321 | 447 | 289 | 415 | 5.32e-11 | 66.2 |
| MS.gene023183.t1 | AT4G19990 | 27.559 | 127 | 92 | 0 | 321 | 447 | 346 | 472 | 5.32e-11 | 66.2 |
| MS.gene023183.t1 | AT4G19990 | 27.559 | 127 | 92 | 0 | 321 | 447 | 346 | 472 | 5.32e-11 | 66.2 |
| MS.gene023183.t1 | AT4G19990 | 27.559 | 127 | 92 | 0 | 321 | 447 | 346 | 472 | 5.41e-11 | 66.2 |
| MS.gene023183.t1 | AT4G19990 | 27.559 | 127 | 92 | 0 | 321 | 447 | 346 | 472 | 5.84e-11 | 66.2 |
| MS.gene023183.t1 | AT4G19990 | 27.559 | 127 | 92 | 0 | 321 | 447 | 346 | 472 | 5.84e-11 | 66.2 |
| MS.gene023183.t1 | AT4G19990 | 27.559 | 127 | 92 | 0 | 321 | 447 | 360 | 486 | 6.12e-11 | 65.9 |
Find 102 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTAAAACTTACTTATT+AGG | 0.177601 | 4.3:-18679473 | None:intergenic |
| ATGAGATGCCTCTTGGAATA+TGG | 0.199211 | 4.3:+18678292 | MS.gene023183:CDS |
| TTCTCACAACCACGAGTTAT+TGG | 0.199264 | 4.3:+18677870 | MS.gene023183:CDS |
| ATCACATGTTCTTGAGTTTC+AGG | 0.210618 | 4.3:-18679230 | None:intergenic |
| CTCATGTTGAAGCAACTTAA+AGG | 0.248230 | 4.3:-18678836 | None:intergenic |
| TGTTTATTTGCAAAACAAAA+TGG | 0.260407 | 4.3:+18677604 | MS.gene023183:CDS |
| AAAATCTGTCAAACTTGTTT+TGG | 0.261322 | 4.3:-18678599 | None:intergenic |
| ATTCGTGCATATGAAGCTTT+TGG | 0.265394 | 4.3:+18678228 | MS.gene023183:CDS |
| CATCAATTGTGAATTCATAT+TGG | 0.299021 | 4.3:-18678161 | None:intergenic |
| AATATCATCATAAAGATAAA+AGG | 0.310779 | 4.3:+18679203 | MS.gene023183:CDS |
| TCAAGAACATGTGATTGATT+TGG | 0.314506 | 4.3:+18679238 | MS.gene023183:CDS |
| CAATATGAATTCACAATTGA+TGG | 0.320293 | 4.3:+18678162 | MS.gene023183:CDS |
| GCAGCTTCAACCCCTCCTTT+TGG | 0.339248 | 4.3:-18679344 | None:intergenic |
| ATTCAATCATATAGTGGTAT+TGG | 0.341059 | 4.3:+18678072 | MS.gene023183:CDS |
| ACTCTCGCTATAAGACTTAC+AGG | 0.343612 | 4.3:-18677982 | None:intergenic |
| CAAATTGGAGCATATTGTTT+GGG | 0.347369 | 4.3:+18678191 | MS.gene023183:CDS |
| GAGCATATTGTTTGGGCATT+TGG | 0.348974 | 4.3:+18678198 | MS.gene023183:CDS |
| ACAAATTGGAGCATATTGTT+TGG | 0.352856 | 4.3:+18678190 | MS.gene023183:CDS |
| AATTGATGGAAGTAACAAAT+TGG | 0.358783 | 4.3:+18678176 | MS.gene023183:CDS |
| ATGACAACGACGAGGCTTCT+TGG | 0.366012 | 4.3:-18679366 | None:intergenic |
| CCTCAAGTCACTAACATTGA+TGG | 0.366209 | 4.3:+18677415 | MS.gene023183:CDS |
| TCAGTCTCTAATTCGATGTT+TGG | 0.372448 | 4.3:+18679124 | MS.gene023183:intron |
| AACGTCACAGTCAGCATTGT+TGG | 0.377007 | 4.3:-18679273 | None:intergenic |
| ATGGTCTCACAGTTTGGTTT+GGG | 0.387072 | 4.3:+18678436 | MS.gene023183:CDS |
| GTAGTTACTAAGAGAAGAAT+TGG | 0.389295 | 4.3:+18677811 | MS.gene023183:CDS |
| AATGGTCTCACAGTTTGGTT+TGG | 0.398201 | 4.3:+18678435 | MS.gene023183:CDS |
| TTCCAAGAGGCATCTCATAA+TGG | 0.403997 | 4.3:-18678287 | None:intergenic |
| TCAAATATTTGCCCTTCAAA+AGG | 0.411166 | 4.3:-18677445 | None:intergenic |
| ATCCATCGGGTGTTTATAAG+AGG | 0.417116 | 4.3:+18677683 | MS.gene023183:CDS |
| TTTGCTGGAATGACAACAAC+AGG | 0.418779 | 4.3:+18678532 | MS.gene023183:CDS |
| AAAGTAATGGTCTCACAGTT+TGG | 0.427267 | 4.3:+18678430 | MS.gene023183:CDS |
| TTGGGCCTTAGCTTATTTGA+AGG | 0.435274 | 4.3:+18678501 | MS.gene023183:CDS |
| TATACGACCACCATCAACTT+TGG | 0.437731 | 4.3:-18678926 | None:intergenic |
| GACGAGGCATGTTCTTCAAT+AGG | 0.443666 | 4.3:-18678796 | None:intergenic |
| AACCATTATGAGATGCCTCT+TGG | 0.446043 | 4.3:+18678285 | MS.gene023183:CDS |
| TGATTAGTTCCACCACAATC+TGG | 0.446933 | 4.3:-18679392 | None:intergenic |
| AAAGACAAGTGAACGAGAAC+AGG | 0.453486 | 4.3:+18679160 | MS.gene023183:CDS |
| TGAGATGCCTCTTGGAATAT+GGG | 0.456117 | 4.3:+18678293 | MS.gene023183:CDS |
| GTTTGTCATCGTGGTGGTAT+TGG | 0.458689 | 4.3:+18677712 | MS.gene023183:CDS |
| ATGCGATCTTGATCAACAAT+TGG | 0.465554 | 4.3:-18677934 | None:intergenic |
| CTCACAGTTTGGTTTGGGTG+TGG | 0.468983 | 4.3:+18678441 | MS.gene023183:CDS |
| TATAAGACTTACAGGGCAAC+CGG | 0.483233 | 4.3:-18677974 | None:intergenic |
| ATAATGGTTTATTCTATATG+TGG | 0.485058 | 4.3:-18678271 | None:intergenic |
| CTTGAGTTAGAGAAAAGAAC+AGG | 0.494786 | 4.3:+18678006 | MS.gene023183:CDS |
| AAAACAAAAGGTCGGCCAAA+AGG | 0.495104 | 4.3:+18679314 | MS.gene023183:CDS |
| TTGATAGGATCATGAAGGGT+TGG | 0.498564 | 4.3:+18679560 | MS.gene023183:intron |
| TGAAGCAACTTAAAGGCATA+AGG | 0.499495 | 4.3:-18678829 | None:intergenic |
| CGTTGTCATGTTCCAGATTG+TGG | 0.504732 | 4.3:+18679380 | MS.gene023183:CDS |
| CCAAAAGGATCAAGACCAAA+AGG | 0.514192 | 4.3:+18679329 | MS.gene023183:CDS |
| GTCAAAATTAGAAATCAAGC+TGG | 0.517568 | 4.3:+18678718 | MS.gene023183:CDS |
| ATTGGAATGTTACGATAAGC+AGG | 0.522557 | 4.3:-18677916 | None:intergenic |
| AATTGTGAATTCATATTGGA+GGG | 0.524627 | 4.3:-18678157 | None:intergenic |
| ATGTTATTGACTTGAGGCAA+GGG | 0.525418 | 4.3:-18677517 | None:intergenic |
| TAAGCAATGATGCTAGTGAT+TGG | 0.525487 | 4.3:+18677386 | MS.gene023183:CDS |
| ACCACGCAAAACTGTTGAAG+TGG | 0.526679 | 4.3:+18677738 | MS.gene023183:CDS |
| TTAGAGAAAAGAACAGGCAC+AGG | 0.528687 | 4.3:+18678012 | MS.gene023183:CDS |
| ATACTATTATTGTCTAAAGC+CGG | 0.531055 | 4.3:+18677955 | MS.gene023183:CDS |
| CAACATCATACCAAAGTTGA+TGG | 0.538288 | 4.3:+18678916 | MS.gene023183:CDS |
| AAGTCACTAACATTGATGGA+TGG | 0.540573 | 4.3:+18677419 | MS.gene023183:CDS |
| TGAACGAGAATGGAAAGTAA+TGG | 0.544871 | 4.3:+18678417 | MS.gene023183:CDS |
| CAATTGTGAATTCATATTGG+AGG | 0.548419 | 4.3:-18678158 | None:intergenic |
| TTGCACAACATAAGAGCCAT+TGG | 0.551354 | 4.3:-18678896 | None:intergenic |
| AGTCACTAACATTGATGGAT+GGG | 0.552255 | 4.3:+18677420 | MS.gene023183:CDS |
| TAAGAGAAGAATTGGCATTG+AGG | 0.553953 | 4.3:+18677819 | MS.gene023183:CDS |
| GTGCTTTGATAGGATCATGA+AGG | 0.556862 | 4.3:+18679555 | MS.gene023183:intron |
| CAAGTCAATAACATTGATGA+GGG | 0.558520 | 4.3:+18677526 | MS.gene023183:CDS |
| AAAGTCCTTCAAATAAGCTA+AGG | 0.560983 | 4.3:-18678506 | None:intergenic |
| ACATGTGATTGATTTGGAAG+AGG | 0.565753 | 4.3:+18679244 | MS.gene023183:CDS |
| GGAAAATGTGTTGTAATCTG+AGG | 0.568974 | 4.3:-18678775 | None:intergenic |
| ATGTGATTGTAGTGCAAAGA+TGG | 0.570079 | 4.3:+18677789 | MS.gene023183:CDS |
| ATGTTAGTGACTTGAGGCAA+GGG | 0.572230 | 4.3:-18677409 | None:intergenic |
| GTGTCTGAAGAGAATCCATC+GGG | 0.572540 | 4.3:+18677670 | MS.gene023183:CDS |
| TCATCAATGTTATTGACTTG+AGG | 0.573525 | 4.3:-18677523 | None:intergenic |
| TAGAAATCAAGCTGGAGAAG+AGG | 0.577533 | 4.3:+18678726 | MS.gene023183:CDS |
| CGAGTTATTGGATGACAAAG+AGG | 0.580002 | 4.3:+18677882 | MS.gene023183:CDS |
| AATGTTATTGACTTGAGGCA+AGG | 0.580693 | 4.3:-18677518 | None:intergenic |
| AATGTTAGTGACTTGAGGCA+AGG | 0.597462 | 4.3:-18677410 | None:intergenic |
| AGGGAATTTGTTTGTCATCG+TGG | 0.598966 | 4.3:+18677703 | MS.gene023183:CDS |
| TGTGTCTGAAGAGAATCCAT+CGG | 0.599444 | 4.3:+18677669 | MS.gene023183:CDS |
| TCCCTCTTATAAACACCCGA+TGG | 0.599604 | 4.3:-18677685 | None:intergenic |
| GCAGCAATTGAAGCTGCCAA+TGG | 0.600590 | 4.3:+18678880 | MS.gene023183:CDS |
| TCAAGTCAATAACATTGATG+AGG | 0.603097 | 4.3:+18677525 | MS.gene023183:CDS |
| CCATCAATGTTAGTGACTTG+AGG | 0.606113 | 4.3:-18677415 | None:intergenic |
| CTGTTGAAGTGGAAAATCAA+AGG | 0.606328 | 4.3:+18677749 | MS.gene023183:CDS |
| CTTTGTCATCCAATAACTCG+TGG | 0.606716 | 4.3:-18677879 | None:intergenic |
| AAGGATCAAGACCAAAAGGA+GGG | 0.611165 | 4.3:+18679333 | MS.gene023183:CDS |
| CTAAGGCCCAAAATTTACGA+TGG | 0.615020 | 4.3:-18678489 | None:intergenic |
| TAAGGCCCAAAATTTACGAT+GGG | 0.615697 | 4.3:-18678488 | None:intergenic |
| GAATTTGTTTGTCATCGTGG+TGG | 0.618777 | 4.3:+18677706 | MS.gene023183:CDS |
| TCCATCGGGTGTTTATAAGA+GGG | 0.625908 | 4.3:+18677684 | MS.gene023183:CDS |
| TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 4.3:-18679461 | None:intergenic |
| TGTCATGTTCCAGATTGTGG+TGG | 0.637809 | 4.3:+18679383 | MS.gene023183:CDS |
| CTCTCGCTATAAGACTTACA+GGG | 0.647869 | 4.3:-18677981 | None:intergenic |
| AAAGGATCAAGACCAAAAGG+AGG | 0.655085 | 4.3:+18679332 | MS.gene023183:CDS |
| ACACCAACCCATATTCCAAG+AGG | 0.676376 | 4.3:-18678300 | None:intergenic |
| TGCTTTGATAGGATCATGAA+GGG | 0.676443 | 4.3:+18679556 | MS.gene023183:intron |
| AAGTTTGAAAGATCGAGATG+AGG | 0.682349 | 4.3:+18678134 | MS.gene023183:CDS |
| CATCATACCAAAGTTGATGG+TGG | 0.683172 | 4.3:+18678919 | MS.gene023183:CDS |
| AGGATCAAGACCAAAAGGAG+GGG | 0.696841 | 4.3:+18679334 | MS.gene023183:CDS |
| AAGTCAATAACATTGATGAG+GGG | 0.714581 | 4.3:+18677527 | MS.gene023183:CDS |
| ATAAGGTGTGAGTATAGACG+AGG | 0.720548 | 4.3:-18678812 | None:intergenic |
| TCTGGAACATGACAACGACG+AGG | 0.797744 | 4.3:-18679374 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTAACTGTATTTTTA+TGG | + | chr4.3:18679533-18679552 | MS.gene023183:intron | 10.0% |
| !! | AATATCATCATAAAGATAAA+AGG | + | chr4.3:18679203-18679222 | MS.gene023183:CDS | 15.0% |
| !!! | AATTTTATTCAATCATATAG+TGG | + | chr4.3:18678066-18678085 | MS.gene023183:CDS | 15.0% |
| !! | ATAATGGTTTATTCTATATG+TGG | - | chr4.3:18678274-18678293 | None:intergenic | 20.0% |
| !! | CCAATTAAAACTTACTTATT+AGG | - | chr4.3:18679476-18679495 | None:intergenic | 20.0% |
| !! | TGTTTATTTGCAAAACAAAA+TGG | + | chr4.3:18677604-18677623 | MS.gene023183:CDS | 20.0% |
| !!! | AACAAAATGGATTTTCTATT+AGG | + | chr4.3:18677617-18677636 | MS.gene023183:CDS | 20.0% |
| !!! | CATGGAAATTCAATTTTTTT+TGG | + | chr4.3:18678330-18678349 | MS.gene023183:intron | 20.0% |
| !!! | CCTAATAAGTAAGTTTTAAT+TGG | + | chr4.3:18679473-18679492 | MS.gene023183:intron | 20.0% |
| !!! | CTAATATCTTTTTCTAAGAA+TGG | - | chr4.3:18678045-18678064 | None:intergenic | 20.0% |
| !!! | TGATTGTTATATTTTTGTGT+AGG | + | chr4.3:18678684-18678703 | MS.gene023183:intron | 20.0% |
| !!! | TTATTACATGACTAGATTTT+GGG | - | chr4.3:18679076-18679095 | None:intergenic | 20.0% |
| !!! | TTTATTACATGACTAGATTT+TGG | - | chr4.3:18679077-18679096 | None:intergenic | 20.0% |
| ! | AATTGATGGAAGTAACAAAT+TGG | + | chr4.3:18678176-18678195 | MS.gene023183:CDS | 25.0% |
| ! | AATTGTGAATTCATATTGGA+GGG | - | chr4.3:18678160-18678179 | None:intergenic | 25.0% |
| ! | ATTCAATCATATAGTGGTAT+TGG | + | chr4.3:18678072-18678091 | MS.gene023183:CDS | 25.0% |
| ! | CAATATGAATTCACAATTGA+TGG | + | chr4.3:18678162-18678181 | MS.gene023183:CDS | 25.0% |
| ! | CATCAATTGTGAATTCATAT+TGG | - | chr4.3:18678164-18678183 | None:intergenic | 25.0% |
| ! | TCCAAACAAAAAGAGAAAAA+TGG | + | chr4.3:18679430-18679449 | MS.gene023183:CDS | 25.0% |
| ! | TTGTTTCAAAAACAAAAGGT+CGG | + | chr4.3:18679306-18679325 | MS.gene023183:CDS | 25.0% |
| !! | ATACTATTATTGTCTAAAGC+CGG | + | chr4.3:18677955-18677974 | MS.gene023183:CDS | 25.0% |
| !! | GATATTTTCTAACTCTCTTT+TGG | - | chr4.3:18679189-18679208 | None:intergenic | 25.0% |
| !! | TCAAATATTTTCCCTTCAAA+AGG | - | chr4.3:18677556-18677575 | None:intergenic | 25.0% |
| !! | TTTTACCCATCGTAAATTTT+GGG | + | chr4.3:18678483-18678502 | MS.gene023183:CDS | 25.0% |
| !! | TTTTTACCCATCGTAAATTT+TGG | + | chr4.3:18678482-18678501 | MS.gene023183:CDS | 25.0% |
| !!! | AAAATCTGTCAAACTTGTTT+TGG | - | chr4.3:18678602-18678621 | None:intergenic | 25.0% |
| !!! | TATTTTTATGGTGCTTTGAT+AGG | + | chr4.3:18679545-18679564 | MS.gene023183:intron | 25.0% |
| !!! | TCCATTTTTCTCTTTTTGTT+TGG | - | chr4.3:18679434-18679453 | None:intergenic | 25.0% |
| !!! | TGTTATATTTTTGTGTAGGT+TGG | + | chr4.3:18678688-18678707 | MS.gene023183:intron | 25.0% |
| AAAGTCCTTCAAATAAGCTA+AGG | - | chr4.3:18678509-18678528 | None:intergenic | 30.0% | |
| AAGTCAATAACATTGATGAG+GGG | + | chr4.3:18677527-18677546 | MS.gene023183:CDS | 30.0% | |
| ACAAATTGGAGCATATTGTT+TGG | + | chr4.3:18678190-18678209 | MS.gene023183:CDS | 30.0% | |
| CAAATTGGAGCATATTGTTT+GGG | + | chr4.3:18678191-18678210 | MS.gene023183:CDS | 30.0% | |
| CAAGTCAATAACATTGATGA+GGG | + | chr4.3:18677526-18677545 | MS.gene023183:CDS | 30.0% | |
| CAATTGTGAATTCATATTGG+AGG | - | chr4.3:18678161-18678180 | None:intergenic | 30.0% | |
| CATGTAATAAACTGCAATGA+TGG | + | chr4.3:18679086-18679105 | MS.gene023183:intron | 30.0% | |
| GTAGTTACTAAGAGAAGAAT+TGG | + | chr4.3:18677811-18677830 | MS.gene023183:CDS | 30.0% | |
| GTCAAAATTAGAAATCAAGC+TGG | + | chr4.3:18678718-18678737 | MS.gene023183:CDS | 30.0% | |
| TACTTATTAGGAGATTGAGA+AGG | - | chr4.3:18679464-18679483 | None:intergenic | 30.0% | |
| TCAAATATTTGCCCTTCAAA+AGG | - | chr4.3:18677448-18677467 | None:intergenic | 30.0% | |
| TCAAGAACATGTGATTGATT+TGG | + | chr4.3:18679238-18679257 | MS.gene023183:CDS | 30.0% | |
| TCAAGTCAATAACATTGATG+AGG | + | chr4.3:18677525-18677544 | MS.gene023183:CDS | 30.0% | |
| ! | AATTGGCATTGAGGAAAAAT+GGG | + | chr4.3:18677828-18677847 | MS.gene023183:CDS | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | + | chr4.3:18679030-18679049 | MS.gene023183:intron | 30.0% |
| !! | CCTGTTGTTTCAAAAACAAA+AGG | + | chr4.3:18679302-18679321 | MS.gene023183:CDS | 30.0% |
| !! | CGAAAAGGAAGATATTTTGA+TGG | - | chr4.3:18679029-18679048 | None:intergenic | 30.0% |
| !! | TCATCAATGTTATTGACTTG+AGG | - | chr4.3:18677526-18677545 | None:intergenic | 30.0% |
| !!! | CCTTTTGTTTTTGAAACAAC+AGG | - | chr4.3:18679305-18679324 | None:intergenic | 30.0% |
| !!! | TTGAAGGACTTTTTTTTTGC+TGG | + | chr4.3:18678517-18678536 | MS.gene023183:CDS | 30.0% |
| AAAGTAATGGTCTCACAGTT+TGG | + | chr4.3:18678430-18678449 | MS.gene023183:CDS | 35.0% | |
| AAGTCACTAACATTGATGGA+TGG | + | chr4.3:18677419-18677438 | MS.gene023183:CDS | 35.0% | |
| AAGTTTGAAAGATCGAGATG+AGG | + | chr4.3:18678134-18678153 | MS.gene023183:CDS | 35.0% | |
| ATCACATGTTCTTGAGTTTC+AGG | - | chr4.3:18679233-18679252 | None:intergenic | 35.0% | |
| ATGCGATCTTGATCAACAAT+TGG | - | chr4.3:18677937-18677956 | None:intergenic | 35.0% | |
| ATGTGATTGTAGTGCAAAGA+TGG | + | chr4.3:18677789-18677808 | MS.gene023183:CDS | 35.0% | |
| ATTGGAATGTTACGATAAGC+AGG | - | chr4.3:18677919-18677938 | None:intergenic | 35.0% | |
| CAACATCATACCAAAGTTGA+TGG | + | chr4.3:18678916-18678935 | MS.gene023183:CDS | 35.0% | |
| CGAAATGAGAAGATTTCTTC+AGG | + | chr4.3:18678366-18678385 | MS.gene023183:intron | 35.0% | |
| CTCATGTTGAAGCAACTTAA+AGG | - | chr4.3:18678839-18678858 | None:intergenic | 35.0% | |
| CTGTTGAAGTGGAAAATCAA+AGG | + | chr4.3:18677749-18677768 | MS.gene023183:CDS | 35.0% | |
| CTTGAGTTAGAGAAAAGAAC+AGG | + | chr4.3:18678006-18678025 | MS.gene023183:CDS | 35.0% | |
| GGAAAATGTGTTGTAATCTG+AGG | - | chr4.3:18678778-18678797 | None:intergenic | 35.0% | |
| TAAGAGAAGAATTGGCATTG+AGG | + | chr4.3:18677819-18677838 | MS.gene023183:CDS | 35.0% | |
| TAAGCAATGATGCTAGTGAT+TGG | + | chr4.3:18677386-18677405 | MS.gene023183:CDS | 35.0% | |
| TAAGGCCCAAAATTTACGAT+GGG | - | chr4.3:18678491-18678510 | None:intergenic | 35.0% | |
| TAGAGACTGAAATTTAGCAG+AGG | - | chr4.3:18679114-18679133 | None:intergenic | 35.0% | |
| TCAGTCTCTAATTCGATGTT+TGG | + | chr4.3:18679124-18679143 | MS.gene023183:intron | 35.0% | |
| TGAACGAGAATGGAAAGTAA+TGG | + | chr4.3:18678417-18678436 | MS.gene023183:CDS | 35.0% | |
| TGCTTTGATAGGATCATGAA+GGG | + | chr4.3:18679556-18679575 | MS.gene023183:intron | 35.0% | |
| ! | AGTCACTAACATTGATGGAT+GGG | + | chr4.3:18677420-18677439 | MS.gene023183:CDS | 35.0% |
| ! | ATTCGTGCATATGAAGCTTT+TGG | + | chr4.3:18678228-18678247 | MS.gene023183:CDS | 35.0% |
| ! | CAGATGATTTTGAACGAGAA+TGG | + | chr4.3:18678407-18678426 | MS.gene023183:CDS | 35.0% |
| ! | GAATTGGCATTGAGGAAAAA+TGG | + | chr4.3:18677827-18677846 | MS.gene023183:CDS | 35.0% |
| ! | TGAAGCAACTTAAAGGCATA+AGG | - | chr4.3:18678832-18678851 | None:intergenic | 35.0% |
| !! | AATGTTATTGACTTGAGGCA+AGG | - | chr4.3:18677521-18677540 | None:intergenic | 35.0% |
| !! | ACATGTGATTGATTTGGAAG+AGG | + | chr4.3:18679244-18679263 | MS.gene023183:CDS | 35.0% |
| !! | ATGTTATTGACTTGAGGCAA+GGG | - | chr4.3:18677520-18677539 | None:intergenic | 35.0% |
| AAAACAAAAGGTCGGCCAAA+AGG | + | chr4.3:18679314-18679333 | MS.gene023183:CDS | 40.0% | |
| AAAGACAAGTGAACGAGAAC+AGG | + | chr4.3:18679160-18679179 | MS.gene023183:CDS | 40.0% | |
| AAAGGATCAAGACCAAAAGG+AGG | + | chr4.3:18679332-18679351 | MS.gene023183:CDS | 40.0% | |
| AACCATTATGAGATGCCTCT+TGG | + | chr4.3:18678285-18678304 | MS.gene023183:CDS | 40.0% | |
| AAGGATCAAGACCAAAAGGA+GGG | + | chr4.3:18679333-18679352 | MS.gene023183:CDS | 40.0% | |
| AATGGTCTCACAGTTTGGTT+TGG | + | chr4.3:18678435-18678454 | MS.gene023183:CDS | 40.0% | |
| AATGTTAGTGACTTGAGGCA+AGG | - | chr4.3:18677413-18677432 | None:intergenic | 40.0% | |
| ACTCTCGCTATAAGACTTAC+AGG | - | chr4.3:18677985-18678004 | None:intergenic | 40.0% | |
| ATAAGGTGTGAGTATAGACG+AGG | - | chr4.3:18678815-18678834 | None:intergenic | 40.0% | |
| ATCCATCGGGTGTTTATAAG+AGG | + | chr4.3:18677683-18677702 | MS.gene023183:CDS | 40.0% | |
| ATGAGATGCCTCTTGGAATA+TGG | + | chr4.3:18678292-18678311 | MS.gene023183:CDS | 40.0% | |
| ATGTTAGTGACTTGAGGCAA+GGG | - | chr4.3:18677412-18677431 | None:intergenic | 40.0% | |
| CCAAAAGGATCAAGACCAAA+AGG | + | chr4.3:18679329-18679348 | MS.gene023183:CDS | 40.0% | |
| CCATCAATGTTAGTGACTTG+AGG | - | chr4.3:18677418-18677437 | None:intergenic | 40.0% | |
| CCTCAAGTCACTAACATTGA+TGG | + | chr4.3:18677415-18677434 | MS.gene023183:CDS | 40.0% | |
| CGAGTTATTGGATGACAAAG+AGG | + | chr4.3:18677882-18677901 | MS.gene023183:CDS | 40.0% | |
| CTAAGGCCCAAAATTTACGA+TGG | - | chr4.3:18678492-18678511 | None:intergenic | 40.0% | |
| CTCTCGCTATAAGACTTACA+GGG | - | chr4.3:18677984-18678003 | None:intergenic | 40.0% | |
| CTTTGTCATCCAATAACTCG+TGG | - | chr4.3:18677882-18677901 | None:intergenic | 40.0% | |
| GAGCATATTGTTTGGGCATT+TGG | + | chr4.3:18678198-18678217 | MS.gene023183:CDS | 40.0% | |
| GTGCTTTGATAGGATCATGA+AGG | + | chr4.3:18679555-18679574 | MS.gene023183:intron | 40.0% | |
| TAGAAATCAAGCTGGAGAAG+AGG | + | chr4.3:18678726-18678745 | MS.gene023183:CDS | 40.0% | |
| TATAAGACTTACAGGGCAAC+CGG | - | chr4.3:18677977-18677996 | None:intergenic | 40.0% | |
| TATACGACCACCATCAACTT+TGG | - | chr4.3:18678929-18678948 | None:intergenic | 40.0% | |
| TCCATCGGGTGTTTATAAGA+GGG | + | chr4.3:18677684-18677703 | MS.gene023183:CDS | 40.0% | |
| TGAGATGCCTCTTGGAATAT+GGG | + | chr4.3:18678293-18678312 | MS.gene023183:CDS | 40.0% | |
| TGTGTCTGAAGAGAATCCAT+CGG | + | chr4.3:18677669-18677688 | MS.gene023183:CDS | 40.0% | |
| TTAGAGAAAAGAACAGGCAC+AGG | + | chr4.3:18678012-18678031 | MS.gene023183:CDS | 40.0% | |
| TTCTCACAACCACGAGTTAT+TGG | + | chr4.3:18677870-18677889 | MS.gene023183:CDS | 40.0% | |
| TTGATAGGATCATGAAGGGT+TGG | + | chr4.3:18679560-18679579 | MS.gene023183:intron | 40.0% | |
| TTGCACAACATAAGAGCCAT+TGG | - | chr4.3:18678899-18678918 | None:intergenic | 40.0% | |
| TTGGGCCTTAGCTTATTTGA+AGG | + | chr4.3:18678501-18678520 | MS.gene023183:CDS | 40.0% | |
| TTTGCTGGAATGACAACAAC+AGG | + | chr4.3:18678532-18678551 | MS.gene023183:CDS | 40.0% | |
| ! | AGGGAATTTGTTTGTCATCG+TGG | + | chr4.3:18677703-18677722 | MS.gene023183:CDS | 40.0% |
| ! | ATGAGGGGATTCCTTTTGAA+GGG | + | chr4.3:18677542-18677561 | MS.gene023183:CDS | 40.0% |
| ! | ATGGTCTCACAGTTTGGTTT+GGG | + | chr4.3:18678436-18678455 | MS.gene023183:CDS | 40.0% |
| ! | GAATTTGTTTGTCATCGTGG+TGG | + | chr4.3:18677706-18677725 | MS.gene023183:CDS | 40.0% |
| ! | TGATTAGTTCCACCACAATC+TGG | - | chr4.3:18679395-18679414 | None:intergenic | 40.0% |
| !! | ATGGATGGGTTCCTTTTGAA+GGG | + | chr4.3:18677434-18677453 | MS.gene023183:CDS | 40.0% |
| !! | CATCATACCAAAGTTGATGG+TGG | + | chr4.3:18678919-18678938 | MS.gene023183:CDS | 40.0% |
| !! | TGGGTTGGTGTTGATAATCA+TGG | + | chr4.3:18678312-18678331 | MS.gene023183:intron | 40.0% |
| !! | TTCCAAGAGGCATCTCATAA+TGG | - | chr4.3:18678290-18678309 | None:intergenic | 40.0% |
| !!! | CCTTTTGGTCTTGATCCTTT+TGG | - | chr4.3:18679332-18679351 | None:intergenic | 40.0% |
| AACGTCACAGTCAGCATTGT+TGG | - | chr4.3:18679276-18679295 | None:intergenic | 45.0% | |
| ACACCAACCCATATTCCAAG+AGG | - | chr4.3:18678303-18678322 | None:intergenic | 45.0% | |
| ACCACGCAAAACTGTTGAAG+TGG | + | chr4.3:18677738-18677757 | MS.gene023183:CDS | 45.0% | |
| AGGATCAAGACCAAAAGGAG+GGG | + | chr4.3:18679334-18679353 | MS.gene023183:CDS | 45.0% | |
| ATGCCTCTTGGAATATGGGT+TGG | + | chr4.3:18678297-18678316 | MS.gene023183:intron | 45.0% | |
| CGTTGTCATGTTCCAGATTG+TGG | + | chr4.3:18679380-18679399 | MS.gene023183:CDS | 45.0% | |
| CTTTCTCGTCTCCATCGAAA+AGG | - | chr4.3:18679044-18679063 | None:intergenic | 45.0% | |
| GACGAGGCATGTTCTTCAAT+AGG | - | chr4.3:18678799-18678818 | None:intergenic | 45.0% | |
| GTGTCTGAAGAGAATCCATC+GGG | + | chr4.3:18677670-18677689 | MS.gene023183:CDS | 45.0% | |
| GTTTGTCATCGTGGTGGTAT+TGG | + | chr4.3:18677712-18677731 | MS.gene023183:CDS | 45.0% | |
| TCCCTCTTATAAACACCCGA+TGG | - | chr4.3:18677688-18677707 | None:intergenic | 45.0% | |
| TGTCATGTTCCAGATTGTGG+TGG | + | chr4.3:18679383-18679402 | MS.gene023183:CDS | 45.0% | |
| ! | GATGAGGGGATTCCTTTTGA+AGG | + | chr4.3:18677541-18677560 | MS.gene023183:CDS | 45.0% |
| ! | TCCACTTCAACAGTTTTGCG+TGG | - | chr4.3:18677742-18677761 | None:intergenic | 45.0% |
| ! | TGGCATTGAGGAAAAATGGG+TGG | + | chr4.3:18677831-18677850 | MS.gene023183:CDS | 45.0% |
| !! | GATGGATGGGTTCCTTTTGA+AGG | + | chr4.3:18677433-18677452 | MS.gene023183:CDS | 45.0% |
| ATGACAACGACGAGGCTTCT+TGG | - | chr4.3:18679369-18679388 | None:intergenic | 50.0% | |
| GCAGCAATTGAAGCTGCCAA+TGG | + | chr4.3:18678880-18678899 | MS.gene023183:CDS | 50.0% | |
| ! | TCTGGAACATGACAACGACG+AGG | - | chr4.3:18679377-18679396 | None:intergenic | 50.0% |
| !! | CTCACAGTTTGGTTTGGGTG+TGG | + | chr4.3:18678441-18678460 | MS.gene023183:CDS | 50.0% |
| ! | GCAGCTTCAACCCCTCCTTT+TGG | - | chr4.3:18679347-18679366 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 18677373 | 18679588 | 18677373 | ID=MS.gene023183 |
| chr4.3 | mRNA | 18677373 | 18679588 | 18677373 | ID=MS.gene023183.t1;Parent=MS.gene023183 |
| chr4.3 | exon | 18677373 | 18678314 | 18677373 | ID=MS.gene023183.t1.exon1;Parent=MS.gene023183.t1 |
| chr4.3 | CDS | 18677373 | 18678314 | 18677373 | ID=cds.MS.gene023183.t1;Parent=MS.gene023183.t1 |
| chr4.3 | exon | 18678388 | 18678630 | 18678388 | ID=MS.gene023183.t1.exon2;Parent=MS.gene023183.t1 |
| chr4.3 | CDS | 18678388 | 18678630 | 18678388 | ID=cds.MS.gene023183.t1;Parent=MS.gene023183.t1 |
| chr4.3 | exon | 18678706 | 18678948 | 18678706 | ID=MS.gene023183.t1.exon3;Parent=MS.gene023183.t1 |
| chr4.3 | CDS | 18678706 | 18678948 | 18678706 | ID=cds.MS.gene023183.t1;Parent=MS.gene023183.t1 |
| chr4.3 | exon | 18679128 | 18679480 | 18679128 | ID=MS.gene023183.t1.exon4;Parent=MS.gene023183.t1 |
| chr4.3 | CDS | 18679128 | 18679480 | 18679128 | ID=cds.MS.gene023183.t1;Parent=MS.gene023183.t1 |
| chr4.3 | exon | 18679567 | 18679588 | 18679567 | ID=MS.gene023183.t1.exon5;Parent=MS.gene023183.t1 |
| chr4.3 | CDS | 18679567 | 18679588 | 18679567 | ID=cds.MS.gene023183.t1;Parent=MS.gene023183.t1 |
| Gene Sequence |
| Protein sequence |
