AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02319

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02319.t1 MTR_2g010790 89.647 425 34 4 1 421 1 419 0.0 665
MS.gene02319.t1 MTR_4g109950 54.430 158 65 4 235 390 150 302 1.77e-39 144
MS.gene02319.t1 MTR_3g070120 35.793 271 142 8 155 407 106 362 9.59e-33 127
MS.gene02319.t1 MTR_7g114600 30.921 152 83 4 153 293 68 208 1.46e-12 69.3
MS.gene02319.t1 MTR_4g109910 35.948 153 40 4 235 386 48 143 1.87e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02319.t1 AT1G61730 32.333 433 208 16 9 419 3 372 4.67e-28 114
MS.gene02319.t1 AT4G00390 31.034 406 212 14 16 409 6 355 3.90e-22 97.4
MS.gene02319.t1 AT1G11510 30.295 373 188 15 59 407 15 339 3.22e-20 91.7
MS.gene02319.t1 AT1G11510 29.477 363 175 13 59 407 15 310 6.35e-18 84.7
MS.gene02319.t1 AT4G25210 26.567 335 182 11 111 414 63 364 1.11e-16 81.6
MS.gene02319.t1 AT1G66420 36.090 133 69 4 161 289 53 173 2.49e-14 73.6
MS.gene02319.t1 AT2G01370 31.214 173 95 5 130 288 7 169 1.99e-13 70.5
MS.gene02319.t1 AT1G44810 26.923 286 126 9 8 289 3 209 2.16e-13 70.9
MS.gene02319.t1 AT4G01260 29.433 282 146 9 158 411 57 313 3.54e-12 67.4
MS.gene02319.t1 AT2G25650 35.714 140 72 6 208 336 67 199 1.90e-11 65.9
MS.gene02319.t1 AT5G14280 28.936 235 134 8 208 412 63 294 9.15e-11 63.2

Find 114 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGGCTTGGGCTTGGACT+TGG 0.123490 2.1:+72831392 None:intergenic
CTTGGGCTTGGACTTGGGTT+TGG 0.137721 2.1:+72831398 None:intergenic
GAAGCAAGTGGTTTAACTTT+AGG 0.199493 2.1:+72831436 None:intergenic
ATTGGGCTTGGGCTTGGGCT+TGG 0.201008 2.1:+72831386 None:intergenic
TTGGGCTTGGACTTGGGTTT+GGG 0.211588 2.1:+72831399 None:intergenic
GATTCAGATTCAGCGGGTTT+AGG 0.217235 2.1:+72831541 None:intergenic
AAGCAAGTGGTTTAACTTTA+GGG 0.240022 2.1:+72831437 None:intergenic
CAAGAAGAAATCAAGCAAAT+AGG 0.257807 2.1:-72830567 None:intergenic
GAGTTGATTGGGCTTGGGCT+TGG 0.262442 2.1:+72831380 None:intergenic
TTGGGCTTGGGCTTGGACTT+GGG 0.274782 2.1:+72831393 None:intergenic
GCACCGGAGTTGATTGGGCT+TGG 0.275880 2.1:+72831374 None:intergenic
AGTTGATTGGGCTTGGGCTT+GGG 0.282116 2.1:+72831381 None:intergenic
ATTCAGATTCAGCGGGTTTA+GGG 0.293343 2.1:+72831542 None:intergenic
TGAATCGCGCTGAGGTGGTT+AGG 0.312947 2.1:-72830619 MS.gene02319:CDS
CACCGGAGTTGATTGGGCTT+GGG 0.331565 2.1:+72831375 None:intergenic
TTCTTCGTTGACTACTTTGT+CGG 0.338007 2.1:+72831711 None:intergenic
GTGGGTTCCGATTTCTGTTC+CGG 0.351302 2.1:+72831472 None:intergenic
TTGTGATTCTCAAAGGGCTT+GGG 0.351413 2.1:-72831168 MS.gene02319:CDS
GGCACGCTTAGTTCCGGACT+TGG 0.351838 2.1:+72831348 None:intergenic
GTCAGATAGGGTTGAGTTGG+AGG 0.367989 2.1:-72830684 MS.gene02319:CDS
TGCTCTCTTATCATGAGCTT+TGG 0.370081 2.1:+72830991 None:intergenic
GCAGACTAGATTGGCATTGC+AGG 0.370825 2.1:-72830594 MS.gene02319:CDS
TCAGAATCCGGTTCTGAATC+TGG 0.376206 2.1:-72831514 MS.gene02319:CDS
AAGAAGAAATCAAGCAAATA+GGG 0.379593 2.1:-72830566 None:intergenic
AGTGGTTTAACTTTAGGGTT+AGG 0.384389 2.1:+72831442 None:intergenic
TTCGGCGGCACGCTTAGTTC+CGG 0.394238 2.1:+72831342 None:intergenic
TGGTTGGCACCGGAGTTGAT+TGG 0.408980 2.1:+72831368 None:intergenic
TTCTGAACCGGAACAGAAAT+CGG 0.410111 2.1:-72831479 MS.gene02319:CDS
GCGGGTTTAGGGGTAGAGAT+AGG 0.413172 2.1:+72831553 None:intergenic
CTTGTGATTCTCAAAGGGCT+TGG 0.413788 2.1:-72831169 MS.gene02319:CDS
GGTTGGCACCGGAGTTGATT+GGG 0.414661 2.1:+72831369 None:intergenic
TCTCTTCAATTGCTGAGCAT+TGG 0.418880 2.1:+72831060 None:intergenic
GAATCGCGCTGAGGTGGTTA+GGG 0.419146 2.1:-72830618 MS.gene02319:CDS
CTCGTCGGAGGAAGAGGCGG+TGG 0.434145 2.1:+72831762 None:intergenic
GGGGTAGAGATAGGAGTAGA+AGG 0.435130 2.1:+72831562 None:intergenic
TCTGAATCCGGCTCAGAATC+CGG 0.447335 2.1:-72831526 MS.gene02319:CDS
ATCGTTTCCAGTGTTACTTT+CGG 0.449680 2.1:+72831324 None:intergenic
CGCTTAGTTCCGGACTTGGT+TGG 0.450754 2.1:+72831352 None:intergenic
TCGGAGGAAGAGGCGGTGGG+TGG 0.451878 2.1:+72831766 None:intergenic
TAAGAATGAAAGTGGAAAAG+TGG 0.453012 2.1:-72830822 MS.gene02319:CDS
TTCGGTTCCAGATTCAGAAC+CGG 0.454128 2.1:+72831507 None:intergenic
AACCGAATCTGATTCTGAAC+CGG 0.455116 2.1:-72831491 MS.gene02319:CDS
TCCATCTCCTTCTTCTTCTG+AGG 0.458431 2.1:+72831675 None:intergenic
GGAGAGGTGGAAGAAGTTGC+AGG 0.459564 2.1:-72830663 MS.gene02319:CDS
GGTTTAACTTTAGGGTTAGG+AGG 0.459566 2.1:+72831445 None:intergenic
TTCCGGTTCAGAATCAGATT+CGG 0.461387 2.1:+72831489 None:intergenic
AAGGAAGCAGCTGCATTTCA+CGG 0.465241 2.1:-72831112 MS.gene02319:CDS
AATCACAAAGAGTGCTAAGA+AGG 0.466107 2.1:-72830897 MS.gene02319:CDS
TTGATCCTCGTCGGAGGAAG+AGG 0.466920 2.1:+72831756 None:intergenic
ACTCCGGTGCCAACCAAGTC+CGG 0.469333 2.1:-72831361 MS.gene02319:CDS
ATAGTTACTAAGAATGAAAG+TGG 0.473928 2.1:-72830830 MS.gene02319:CDS
GGAGTCAGATAGGGTTGAGT+TGG 0.474759 2.1:-72830687 MS.gene02319:CDS
TGTGATTCTCAAAGGGCTTG+GGG 0.482044 2.1:-72831167 MS.gene02319:CDS
GTTCCGGACTTGGTTGGCAC+CGG 0.486396 2.1:+72831358 None:intergenic
TTAACTTTAGGGTTAGGAGG+AGG 0.489961 2.1:+72831448 None:intergenic
GGGTATAGCTGTGCTGGATA+AGG 0.490129 2.1:-72830741 MS.gene02319:CDS
GGGTTGAGTTGGAGGAGAGG+TGG 0.490174 2.1:-72830676 MS.gene02319:CDS
GAGATAGGAGTAGAAGGAGG+AGG 0.494629 2.1:+72831568 None:intergenic
TTCAGAACCGGATTCTGAGC+CGG 0.501712 2.1:+72831519 None:intergenic
ACGAGCTTGTGATTCTCAAA+GGG 0.508640 2.1:-72831174 MS.gene02319:CDS
TCTAAGGAAGCTGAAGAAAA+CGG 0.508657 2.1:-72830935 MS.gene02319:CDS
AAGAAAACCACCGGTGGTGG+TGG 0.509946 2.1:-72831286 MS.gene02319:CDS
AAATGGTGGTTCTGCTAGGA+AGG 0.513798 2.1:-72830861 MS.gene02319:CDS
AAGAAGAAAACCACCGGTGG+TGG 0.515031 2.1:-72831289 MS.gene02319:CDS
GAAGTTGCAGGCTGCCGAGA+TGG 0.515486 2.1:-72830651 MS.gene02319:CDS
ATAGGGTTGAGTTGGAGGAG+AGG 0.516403 2.1:-72830679 MS.gene02319:CDS
GGTTAGGGAGCAGACTAGAT+TGG 0.517395 2.1:-72830603 MS.gene02319:CDS
AGATAGGAGTAGAAGGAGGA+GGG 0.520024 2.1:+72831569 None:intergenic
GAAGGAGATGGAGAAGAAGA+AGG 0.521213 2.1:-72831664 MS.gene02319:CDS
GACGAGCTTGTGATTCTCAA+AGG 0.523580 2.1:-72831175 MS.gene02319:CDS
AAACCCGCTGAATCTGAATC+CGG 0.523805 2.1:-72831538 MS.gene02319:CDS
CGGAGGAAGAGGCGGTGGGT+GGG 0.524036 2.1:+72831767 None:intergenic
TCGTTGACTACTTTGTCGGC+TGG 0.525334 2.1:+72831715 None:intergenic
GTTAAATTTGATGAGGCTGC+GGG 0.528643 2.1:-72830761 MS.gene02319:CDS
TGCTCAGCAATTGAAGAGAA+AGG 0.529680 2.1:-72831056 MS.gene02319:CDS
GGCTGCGGGTATAGCTGTGC+TGG 0.534970 2.1:-72830747 MS.gene02319:CDS
GGTTAAATTTGATGAGGCTG+CGG 0.538193 2.1:-72830762 MS.gene02319:CDS
ATCATCAGAACCACCACCAC+CGG 0.552134 2.1:+72831276 None:intergenic
CAATTGAAGAGAAAGGTTCG+TGG 0.552666 2.1:-72831049 MS.gene02319:CDS
TGATGAGAATGAGGCGGAGG+AGG 0.559810 2.1:-72831257 MS.gene02319:CDS
GATTCATCCTCAGAAGAAGA+AGG 0.562296 2.1:-72831682 MS.gene02319:CDS
AATGCAGCTGCTTCCTTCAG+CGG 0.564243 2.1:+72831118 None:intergenic
TTAGGGTTAGGAGGAGGAGT+GGG 0.566966 2.1:+72831454 None:intergenic
GAGCCGGATTCAGATTCAGC+GGG 0.569467 2.1:+72831535 None:intergenic
TGATGATGAGAATGAGGCGG+AGG 0.577141 2.1:-72831260 MS.gene02319:CDS
TCCTCAGAAGAAGAAGGAGA+TGG 0.578512 2.1:-72831676 MS.gene02319:CDS
AAAAGCGGTTTGGAATTGAT+GGG 0.579284 2.1:-72830710 MS.gene02319:CDS
TTCATGGGCTTTGAAGCAAG+TGG 0.579960 2.1:+72831424 None:intergenic
GAGGAGGATGTGAAATTGAC+TGG 0.583042 2.1:-72831241 MS.gene02319:CDS
TCGTCGGAGGAAGAGGCGGT+GGG 0.588753 2.1:+72831763 None:intergenic
TGAAGGTGGTTGATCCTCGT+CGG 0.589745 2.1:+72831747 None:intergenic
GAAAGTGGAAAAGTGGAAAG+TGG 0.593025 2.1:-72830815 MS.gene02319:CDS
AGCCCAAGCCCAATCAACTC+CGG 0.593390 2.1:-72831377 MS.gene02319:CDS
TTTAGGGTTAGGAGGAGGAG+TGG 0.598971 2.1:+72831453 None:intergenic
ATCCTCGTCGGAGGAAGAGG+CGG 0.601599 2.1:+72831759 None:intergenic
CGTGCCGCCGAAAGTAACAC+TGG 0.604597 2.1:-72831331 MS.gene02319:CDS
CACCGCCTCTTCCTCCGACG+AGG 0.604984 2.1:-72831761 MS.gene02319:CDS
GGAAAAGTGGAAAGTGGTGT+TGG 0.606211 2.1:-72830809 MS.gene02319:CDS
AAAGCGGTTTGGAATTGATG+GGG 0.609458 2.1:-72830709 MS.gene02319:CDS
GACTGGAAAGGATCCGCTGA+AGG 0.611489 2.1:-72831131 MS.gene02319:CDS
GTGGGTCGTCGACGAGAGCG+AGG 0.630460 2.1:+72831785 None:intergenic
TGGTTCTGATGATGAGAATG+AGG 0.631876 2.1:-72831266 MS.gene02319:CDS
CGTTCCAAGAAGAAAACCAC+CGG 0.642479 2.1:-72831295 MS.gene02319:CDS
GTTTCCAGTGTTACTTTCGG+CGG 0.643844 2.1:+72831327 None:intergenic
TGAGCCGGATTCAGATTCAG+CGG 0.650032 2.1:+72831534 None:intergenic
TTCAGATTCAGCGGGTTTAG+GGG 0.652803 2.1:+72831543 None:intergenic
GTAGAGATAGGAGTAGAAGG+AGG 0.653610 2.1:+72831565 None:intergenic
CGAACTGGTTAAATTTGATG+AGG 0.653994 2.1:-72830768 MS.gene02319:CDS
ATCAGAACCACCACCACCGG+TGG 0.666036 2.1:+72831279 None:intergenic
AGGTGGTTGATCCTCGTCGG+AGG 0.667833 2.1:+72831750 None:intergenic
AAGCGGTTTGGAATTGATGG+GGG 0.669970 2.1:-72830708 MS.gene02319:CDS
GAAGAAATCGATGAAAGCTG+AGG 0.677405 2.1:-72831083 MS.gene02319:CDS
TCCAAGAAGAAAACCACCGG+TGG 0.717568 2.1:-72831292 MS.gene02319:CDS
TTCTGATGATGAGAATGAGG+CGG 0.722855 2.1:-72831263 MS.gene02319:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATAGTTACTAAGAATGAAAG+TGG - chr2.1:72831552-72831571 MS.gene02319:CDS 25.0%
ATTCAAAAACACTTCCATCT+CGG + chr2.1:72831748-72831767 None:intergenic 30.0%
TAAGAATGAAAGTGGAAAAG+TGG - chr2.1:72831560-72831579 MS.gene02319:CDS 30.0%
! AAGCAAGTGGTTTAACTTTA+GGG + chr2.1:72830948-72830967 None:intergenic 30.0%
!! CATTTGATCTTTTCAAGGTT+TGG - chr2.1:72831412-72831431 MS.gene02319:CDS 30.0%
AAGGAAGCTCCTGTTAAAAA+TGG - chr2.1:72831504-72831523 MS.gene02319:CDS 35.0%
CGAACTGGTTAAATTTGATG+AGG - chr2.1:72831614-72831633 MS.gene02319:CDS 35.0%
GATAAGGATGCTACAAAAAG+CGG - chr2.1:72831657-72831676 MS.gene02319:CDS 35.0%
TCTAAGGAAGCTGAAGAAAA+CGG - chr2.1:72831447-72831466 MS.gene02319:CDS 35.0%
TTGGAGCAAAAATGCTTCTA+AGG - chr2.1:72831431-72831450 MS.gene02319:CDS 35.0%
! AAAAAGCGGTTTGGAATTGA+TGG - chr2.1:72831671-72831690 MS.gene02319:CDS 35.0%
! AAAAGCGGTTTGGAATTGAT+GGG - chr2.1:72831672-72831691 MS.gene02319:CDS 35.0%
! GAAGCAAGTGGTTTAACTTT+AGG + chr2.1:72830949-72830968 None:intergenic 35.0%
! TTAAAAATGGTGGTTCTGCT+AGG - chr2.1:72831517-72831536 MS.gene02319:CDS 35.0%
! TTCTTCGTTGACTACTTTGT+CGG + chr2.1:72830674-72830693 None:intergenic 35.0%
!! AATCACAAAGAGTGCTAAGA+AGG - chr2.1:72831485-72831504 MS.gene02319:CDS 35.0%
!! AGTGGTTTAACTTTAGGGTT+AGG + chr2.1:72830943-72830962 None:intergenic 35.0%
!! ATCGTTTCCAGTGTTACTTT+CGG + chr2.1:72831061-72831080 None:intergenic 35.0%
!!! GAGAGCATTTGATCTTTTCA+AGG - chr2.1:72831407-72831426 MS.gene02319:CDS 35.0%
AACCGAATCTGATTCTGAAC+CGG - chr2.1:72830891-72830910 MS.gene02319:CDS 40.0%
ACGAGCTTGTGATTCTCAAA+GGG - chr2.1:72831208-72831227 MS.gene02319:CDS 40.0%
CAATTGAAGAGAAAGGTTCG+TGG - chr2.1:72831333-72831352 MS.gene02319:CDS 40.0%
GAAAGTGGAAAAGTGGAAAG+TGG - chr2.1:72831567-72831586 MS.gene02319:CDS 40.0%
GAAGAAATCGATGAAAGCTG+AGG - chr2.1:72831299-72831318 MS.gene02319:CDS 40.0%
GAAGCTCCTGTTAAAAATGG+TGG - chr2.1:72831507-72831526 MS.gene02319:CDS 40.0%
GATTCATCCTCAGAAGAAGA+AGG - chr2.1:72830700-72830719 MS.gene02319:CDS 40.0%
GGTTAAATTTGATGAGGCTG+CGG - chr2.1:72831620-72831639 MS.gene02319:CDS 40.0%
GTTAAATTTGATGAGGCTGC+GGG - chr2.1:72831621-72831640 MS.gene02319:CDS 40.0%
TCTCTTCAATTGCTGAGCAT+TGG + chr2.1:72831325-72831344 None:intergenic 40.0%
TGCTCAGCAATTGAAGAGAA+AGG - chr2.1:72831326-72831345 MS.gene02319:CDS 40.0%
TGCTCTCTTATCATGAGCTT+TGG + chr2.1:72831394-72831413 None:intergenic 40.0%
TTCCGGTTCAGAATCAGATT+CGG + chr2.1:72830896-72830915 None:intergenic 40.0%
TTCTGAACCGGAACAGAAAT+CGG - chr2.1:72830903-72830922 MS.gene02319:CDS 40.0%
TTGTGATTCTCAAAGGGCTT+GGG - chr2.1:72831214-72831233 MS.gene02319:CDS 40.0%
! AAAGCGGTTTGGAATTGATG+GGG - chr2.1:72831673-72831692 MS.gene02319:CDS 40.0%
! ATTCAGATTCAGCGGGTTTA+GGG + chr2.1:72830843-72830862 None:intergenic 40.0%
! GAGTTTCATTTTGAGCGAAC+TGG - chr2.1:72831599-72831618 MS.gene02319:CDS 40.0%
! TTCTGATGATGAGAATGAGG+CGG - chr2.1:72831119-72831138 MS.gene02319:CDS 40.0%
!! ACTTGGGTTTGGGTTTTCAT+GGG + chr2.1:72830976-72830995 None:intergenic 40.0%
!! CGTTTCTTTTGCTTTGGCTT+TGG + chr2.1:72830577-72830596 None:intergenic 40.0%
!! GCAGAACCACCATTTTTAAC+AGG + chr2.1:72831516-72831535 None:intergenic 40.0%
!! GGTTTAACTTTAGGGTTAGG+AGG + chr2.1:72830940-72830959 None:intergenic 40.0%
!! TGGTTCTGATGATGAGAATG+AGG - chr2.1:72831116-72831135 MS.gene02319:CDS 40.0%
!! TTAACTTTAGGGTTAGGAGG+AGG + chr2.1:72830937-72830956 None:intergenic 40.0%
!!! TACTTTGTCGGCTGGTTTTT+GGG + chr2.1:72830662-72830681 None:intergenic 40.0%
AAACCCGCTGAATCTGAATC+CGG - chr2.1:72830844-72830863 MS.gene02319:CDS 45.0%
AAGGAAGCAGCTGCATTTCA+CGG - chr2.1:72831270-72831289 MS.gene02319:CDS 45.0%
AATTGATGGGGGAGTCAGAT+AGG - chr2.1:72831685-72831704 MS.gene02319:CDS 45.0%
AGATAGGAGTAGAAGGAGGA+GGG + chr2.1:72830816-72830835 None:intergenic 45.0%
ATTGATGGGGGAGTCAGATA+GGG - chr2.1:72831686-72831705 MS.gene02319:CDS 45.0%
CGTTCCAAGAAGAAAACCAC+CGG - chr2.1:72831087-72831106 MS.gene02319:CDS 45.0%
CTTGTGATTCTCAAAGGGCT+TGG - chr2.1:72831213-72831232 MS.gene02319:CDS 45.0%
GAAGGAGATGGAGAAGAAGA+AGG - chr2.1:72830718-72830737 MS.gene02319:CDS 45.0%
GACGAGCTTGTGATTCTCAA+AGG - chr2.1:72831207-72831226 MS.gene02319:CDS 45.0%
GAGGAGGATGTGAAATTGAC+TGG - chr2.1:72831141-72831160 MS.gene02319:CDS 45.0%
GGAAAAGTGGAAAGTGGTGT+TGG - chr2.1:72831573-72831592 MS.gene02319:CDS 45.0%
GGATGCTACAAAAAGCGGTT+TGG - chr2.1:72831662-72831681 MS.gene02319:CDS 45.0%
GTAGAGATAGGAGTAGAAGG+AGG + chr2.1:72830820-72830839 None:intergenic 45.0%
TCCATCTCCTTCTTCTTCTG+AGG + chr2.1:72830710-72830729 None:intergenic 45.0%
TCCTCAGAAGAAGAAGGAGA+TGG - chr2.1:72830706-72830725 MS.gene02319:CDS 45.0%
TGTGATTCTCAAAGGGCTTG+GGG - chr2.1:72831215-72831234 MS.gene02319:CDS 45.0%
TTCGGTTCCAGATTCAGAAC+CGG + chr2.1:72830878-72830897 None:intergenic 45.0%
! AAATGGTGGTTCTGCTAGGA+AGG - chr2.1:72831521-72831540 MS.gene02319:CDS 45.0%
! AAGCGGTTTGGAATTGATGG+GGG - chr2.1:72831674-72831693 MS.gene02319:CDS 45.0%
! AGTAGAAGGAGGAGGGTTTT+TGG + chr2.1:72830809-72830828 None:intergenic 45.0%
! GATTCAGATTCAGCGGGTTT+AGG + chr2.1:72830844-72830863 None:intergenic 45.0%
! TTCAGATTCAGCGGGTTTAG+GGG + chr2.1:72830842-72830861 None:intergenic 45.0%
! TTTTGTGGCGAAGACTGGAA+AGG - chr2.1:72831239-72831258 MS.gene02319:CDS 45.0%
!! AGTGTTTTTGAATCGCGCTG+AGG - chr2.1:72831755-72831774 MS.gene02319:CDS 45.0%
!! GACTTGGGTTTGGGTTTTCA+TGG + chr2.1:72830977-72830996 None:intergenic 45.0%
!! GTTTCCAGTGTTACTTTCGG+CGG + chr2.1:72831058-72831077 None:intergenic 45.0%
!! TCAGAATCCGGTTCTGAATC+TGG - chr2.1:72830868-72830887 MS.gene02319:CDS 45.0%
!! TTCATGGGCTTTGAAGCAAG+TGG + chr2.1:72830961-72830980 None:intergenic 45.0%
!!! CTACTTTGTCGGCTGGTTTT+TGG + chr2.1:72830663-72830682 None:intergenic 45.0%
!!! GCGGGTTTTGAATCTTTCGA+AGG + chr2.1:72830784-72830803 None:intergenic 45.0%
AAGAAGAAAACCACCGGTGG+TGG - chr2.1:72831093-72831112 MS.gene02319:CDS 50.0%
AATGCAGCTGCTTCCTTCAG+CGG + chr2.1:72831267-72831286 None:intergenic 50.0%
AGTTGATTGGGCTTGGGCTT+GGG + chr2.1:72831004-72831023 None:intergenic 50.0%
ATCATCAGAACCACCACCAC+CGG + chr2.1:72831109-72831128 None:intergenic 50.0%
GAGATAGGAGTAGAAGGAGG+AGG + chr2.1:72830817-72830836 None:intergenic 50.0%
GCAGACTAGATTGGCATTGC+AGG - chr2.1:72831788-72831807 MS.gene02319:CDS 50.0%
GGAGTCAGATAGGGTTGAGT+TGG - chr2.1:72831695-72831714 MS.gene02319:CDS 50.0%
GGGGTAGAGATAGGAGTAGA+AGG + chr2.1:72830823-72830842 None:intergenic 50.0%
GGGTATAGCTGTGCTGGATA+AGG - chr2.1:72831641-72831660 MS.gene02319:CDS 50.0%
GGTTAGGGAGCAGACTAGAT+TGG - chr2.1:72831779-72831798 MS.gene02319:CDS 50.0%
GTGGGTTCCGATTTCTGTTC+CGG + chr2.1:72830913-72830932 None:intergenic 50.0%
TCCAAGAAGAAAACCACCGG+TGG - chr2.1:72831090-72831109 MS.gene02319:CDS 50.0%
TCTGAATCCGGCTCAGAATC+CGG - chr2.1:72830856-72830875 MS.gene02319:CDS 50.0%
TGAAGGTGGTTGATCCTCGT+CGG + chr2.1:72830638-72830657 None:intergenic 50.0%
TGAGCCGGATTCAGATTCAG+CGG + chr2.1:72830851-72830870 None:intergenic 50.0%
TTAGGGTTAGGAGGAGGAGT+GGG + chr2.1:72830931-72830950 None:intergenic 50.0%
TTCAGAACCGGATTCTGAGC+CGG + chr2.1:72830866-72830885 None:intergenic 50.0%
TTGGGCTTGGACTTGGGTTT+GGG + chr2.1:72830986-72831005 None:intergenic 50.0%
! ACCACCGGTGGTTTTCTTCT+TGG + chr2.1:72831094-72831113 None:intergenic 50.0%
! CAAAGGGCTTGGGGATTTTG+TGG - chr2.1:72831224-72831243 MS.gene02319:CDS 50.0%
! GTTTTTGAATCGCGCTGAGG+TGG - chr2.1:72831758-72831777 MS.gene02319:CDS 50.0%
! TCGTTGACTACTTTGTCGGC+TGG + chr2.1:72830670-72830689 None:intergenic 50.0%
! TGATGATGAGAATGAGGCGG+AGG - chr2.1:72831122-72831141 MS.gene02319:CDS 50.0%
! TTTAGGGTTAGGAGGAGGAG+TGG + chr2.1:72830932-72830951 None:intergenic 50.0%
!! AGGAGGAGGGTTTTTGGAAG+CGG + chr2.1:72830803-72830822 None:intergenic 50.0%
!! ATAGGGTTGAGTTGGAGGAG+AGG - chr2.1:72831703-72831722 MS.gene02319:CDS 50.0%
!! GCGAGGCGTTTCTTTTGCTT+TGG + chr2.1:72830583-72830602 None:intergenic 50.0%
!! GTCAGATAGGGTTGAGTTGG+AGG - chr2.1:72831698-72831717 MS.gene02319:CDS 50.0%
!!! GCTGGTTTTTGGGTTGAAGG+TGG + chr2.1:72830652-72830671 None:intergenic 50.0%
!!! TCGGCTGGTTTTTGGGTTGA+AGG + chr2.1:72830655-72830674 None:intergenic 50.0%
AGCCCAAGCCCAATCAACTC+CGG - chr2.1:72831005-72831024 MS.gene02319:CDS 55.0%
CTTGGGCTTGGACTTGGGTT+TGG + chr2.1:72830987-72831006 None:intergenic 55.0%
GAATCGCGCTGAGGTGGTTA+GGG - chr2.1:72831764-72831783 MS.gene02319:CDS 55.0%
GACTGGAAAGGATCCGCTGA+AGG - chr2.1:72831251-72831270 MS.gene02319:CDS 55.0%
GAGCCGGATTCAGATTCAGC+GGG + chr2.1:72830850-72830869 None:intergenic 55.0%
GCGGGTTTAGGGGTAGAGAT+AGG + chr2.1:72830832-72830851 None:intergenic 55.0%
GGAGAGGTGGAAGAAGTTGC+AGG - chr2.1:72831719-72831738 MS.gene02319:CDS 55.0%
TGAATCGCGCTGAGGTGGTT+AGG - chr2.1:72831763-72831782 MS.gene02319:CDS 55.0%
TGATGAGAATGAGGCGGAGG+AGG - chr2.1:72831125-72831144 MS.gene02319:CDS 55.0%
TTGATCCTCGTCGGAGGAAG+AGG + chr2.1:72830629-72830648 None:intergenic 55.0%
TTGGGCTTGGGCTTGGACTT+GGG + chr2.1:72830992-72831011 None:intergenic 55.0%
! AAGAAAACCACCGGTGGTGG+TGG - chr2.1:72831096-72831115 MS.gene02319:CDS 55.0%
! CACCGGAGTTGATTGGGCTT+GGG + chr2.1:72831010-72831029 None:intergenic 55.0%
! CGCTTAGTTCCGGACTTGGT+TGG + chr2.1:72831033-72831052 None:intergenic 55.0%
! GAGTTGATTGGGCTTGGGCT+TGG + chr2.1:72831005-72831024 None:intergenic 55.0%
! GGGGATTTTGTGGCGAAGAC+TGG - chr2.1:72831234-72831253 MS.gene02319:CDS 55.0%
! GGTTGGCACCGGAGTTGATT+GGG + chr2.1:72831016-72831035 None:intergenic 55.0%
! TGGTTGGCACCGGAGTTGAT+TGG + chr2.1:72831017-72831036 None:intergenic 55.0%
!! GGAGGAGGGTTTTTGGAAGC+GGG + chr2.1:72830802-72830821 None:intergenic 55.0%
AGGTGGTTGATCCTCGTCGG+AGG + chr2.1:72830635-72830654 None:intergenic 60.0%
ATCAGAACCACCACCACCGG+TGG + chr2.1:72831106-72831125 None:intergenic 60.0%
ATCCTCGTCGGAGGAAGAGG+CGG + chr2.1:72830626-72830645 None:intergenic 60.0%
ATTGGGCTTGGGCTTGGGCT+TGG + chr2.1:72830999-72831018 None:intergenic 60.0%
CGTGCCGCCGAAAGTAACAC+TGG - chr2.1:72831051-72831070 MS.gene02319:CDS 60.0%
CTTGGGCTTGGGCTTGGACT+TGG + chr2.1:72830993-72831012 None:intergenic 60.0%
GAAGTTGCAGGCTGCCGAGA+TGG - chr2.1:72831731-72831750 MS.gene02319:CDS 60.0%
GGCACGCTTAGTTCCGGACT+TGG + chr2.1:72831037-72831056 None:intergenic 60.0%
TTCGGCGGCACGCTTAGTTC+CGG + chr2.1:72831043-72831062 None:intergenic 60.0%
! ACTCCGGTGCCAACCAAGTC+CGG - chr2.1:72831021-72831040 MS.gene02319:CDS 60.0%
! GCACCGGAGTTGATTGGGCT+TGG + chr2.1:72831011-72831030 None:intergenic 60.0%
! GTTCCGGACTTGGTTGGCAC+CGG + chr2.1:72831027-72831046 None:intergenic 60.0%
!! GGGTTGAGTTGGAGGAGAGG+TGG - chr2.1:72831706-72831725 MS.gene02319:CDS 60.0%
GGCTGCGGGTATAGCTGTGC+TGG - chr2.1:72831635-72831654 MS.gene02319:CDS 65.0%
TCGTCGGAGGAAGAGGCGGT+GGG + chr2.1:72830622-72830641 None:intergenic 65.0%
CACCGCCTCTTCCTCCGACG+AGG - chr2.1:72830621-72830640 MS.gene02319:CDS 70.0%
CGGAGGAAGAGGCGGTGGGT+GGG + chr2.1:72830618-72830637 None:intergenic 70.0%
CTCGTCGGAGGAAGAGGCGG+TGG + chr2.1:72830623-72830642 None:intergenic 70.0%
GTGGGTCGTCGACGAGAGCG+AGG + chr2.1:72830600-72830619 None:intergenic 70.0%
TCGGAGGAAGAGGCGGTGGG+TGG + chr2.1:72830619-72830638 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 72830568 72831836 72830568 ID=MS.gene02319
chr2.1 mRNA 72830568 72831836 72830568 ID=MS.gene02319.t1;Parent=MS.gene02319
chr2.1 exon 72830568 72831836 72830568 ID=MS.gene02319.t1.exon1;Parent=MS.gene02319.t1
chr2.1 CDS 72830568 72831836 72830568 ID=cds.MS.gene02319.t1;Parent=MS.gene02319.t1
Gene Sequence

>MS.gene02319

ATGGCGCCAAAGCCAAAGCAAAAGAAACGCCTCGCTCTCGTCGACGACCCACCCACCGCCTCTTCCTCCGACGAGGATCAACCACCTTCAACCCAAAAACCAGCCGACAAAGTAGTCAACGAAGAACATGAAGATTCATCCTCAGAAGAAGAAGGAGATGGAGAAGAAGAAGGTTCTTCATCTGAAGAAGAAGATAATCAAACTCAACAAACTCCTTCGAAAGATTCAAAACCCGCTTCCAAAAACCCTCCTCCTTCTACTCCTATCTCTACCCCTAAACCCGCTGAATCTGAATCCGGCTCAGAATCCGGTTCTGAATCTGGAACCGAATCTGATTCTGAACCGGAACAGAAATCGGAACCCACTCCTCCTCCTAACCCTAAAGTTAAACCACTTGCTTCAAAGCCCATGAAAACCCAAACCCAAGTCCAAGCCCAAGCCCAAGCCCAATCAACTCCGGTGCCAACCAAGTCCGGAACTAAGCGTGCCGCCGAAAGTAACACTGGAAACGATTCAAAACGTTCCAAGAAGAAAACCACCGGTGGTGGTGGTTCTGATGATGAGAATGAGGCGGAGGAGGATGTGAAATTGACTGGTGAAGACTCGAAGAAGAACTTTCAGAGATTGTTTAGTGAAGAAGACGAGCTTGTGATTCTCAAAGGGCTTGGGGATTTTGTGGCGAAGACTGGAAAGGATCCGCTGAAGGAAGCAGCTGCATTTCACGGTTTCGTGAAGAAATCGATGAAAGCTGAGGCCAATGCTCAGCAATTGAAGAGAAAGGTTCGTGGTTTGAAGAAGAAGTTTGAAAGCAGTGACAATTTTACCAAAGCTCATGATAAGAGAGCATTTGATCTTTTCAAGGTTTGGAGCAAAAATGCTTCTAAGGAAGCTGAAGAAAACGGAAAATCTAACGAGAAAATCACAAAGAGTGCTAAGAAGGAAGCTCCTGTTAAAAATGGTGGTTCTGCTAGGAAGGAATTAGCTATAGTTACTAAGAATGAAAGTGGAAAAGTGGAAAGTGGTGTTGGCAAGAGTTTCATTTTGAGCGAACTGGTTAAATTTGATGAGGCTGCGGGTATAGCTGTGCTGGATAAGGATGCTACAAAAAGCGGTTTGGAATTGATGGGGGAGTCAGATAGGGTTGAGTTGGAGGAGAGGTGGAAGAAGTTGCAGGCTGCCGAGATGGAAGTGTTTTTGAATCGCGCTGAGGTGGTTAGGGAGCAGACTAGATTGGCATTGCAGGAACTCAAGAAGAAATCAAGCAAATAG
Protein sequence

>MS.gene02319.t1

MAPKPKQKKRLALVDDPPTASSSDEDQPPSTQKPADKVVNEEHEDSSSEEEGDGEEEGSSSEEEDNQTQQTPSKDSKPASKNPPPSTPISTPKPAESESGSESGSESGTESDSEPEQKSEPTPPPNPKVKPLASKPMKTQTQVQAQAQAQSTPVPTKSGTKRAAESNTGNDSKRSKKKTTGGGGSDDENEAEEDVKLTGEDSKKNFQRLFSEEDELVILKGLGDFVAKTGKDPLKEAAAFHGFVKKSMKAEANAQQLKRKVRGLKKKFESSDNFTKAHDKRAFDLFKVWSKNASKEAEENGKSNEKITKSAKKEAPVKNGGSARKELAIVTKNESGKVESGVGKSFILSELVKFDEAAGIAVLDKDATKSGLELMGESDRVELEERWKKLQAAEMEVFLNRAEVVREQTRLALQELKKKSSK