Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023191.t1 | XP_013457368.1 | 97.4 | 153 | 3 | 1 | 1 | 152 | 1 | 153 | 3.70E-83 | 317.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023191.t1 | A0A072UNM6 | 97.4 | 153 | 3 | 1 | 1 | 152 | 1 | 153 | 2.7e-83 | 317.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene023191.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023191.t1 | MTR_4g094680 | 97.386 | 153 | 3 | 1 | 1 | 152 | 1 | 153 | 1.05e-109 | 311 |
| MS.gene023191.t1 | MTR_2g036170 | 73.134 | 134 | 25 | 2 | 21 | 154 | 36 | 158 | 6.32e-65 | 199 |
| MS.gene023191.t1 | MTR_4g116300 | 60.741 | 135 | 48 | 1 | 20 | 154 | 4 | 133 | 1.52e-55 | 175 |
| MS.gene023191.t1 | MTR_2g055210 | 52.985 | 134 | 57 | 1 | 19 | 152 | 99 | 226 | 1.30e-47 | 157 |
| MS.gene023191.t1 | MTR_4g078170 | 45.113 | 133 | 67 | 2 | 22 | 153 | 15 | 142 | 1.56e-35 | 122 |
| MS.gene023191.t1 | MTR_5g030130 | 44.526 | 137 | 70 | 2 | 19 | 154 | 32 | 163 | 5.04e-35 | 120 |
| MS.gene023191.t1 | MTR_8g066820 | 42.857 | 140 | 74 | 2 | 15 | 153 | 26 | 160 | 2.09e-34 | 120 |
| MS.gene023191.t1 | MTR_5g030130 | 42.857 | 140 | 74 | 2 | 15 | 153 | 28 | 162 | 6.48e-34 | 119 |
| MS.gene023191.t1 | MTR_5g007230 | 42.857 | 133 | 70 | 2 | 22 | 153 | 21 | 148 | 3.55e-33 | 116 |
| MS.gene023191.t1 | MTR_7g102790 | 42.963 | 135 | 68 | 3 | 22 | 152 | 7 | 136 | 1.18e-29 | 107 |
| MS.gene023191.t1 | MTR_1g062160 | 40.299 | 134 | 73 | 3 | 22 | 153 | 7 | 135 | 1.82e-28 | 104 |
| MS.gene023191.t1 | MTR_2g084495 | 41.045 | 134 | 73 | 4 | 24 | 151 | 6 | 139 | 2.33e-24 | 94.4 |
| MS.gene023191.t1 | MTR_2g060540 | 39.416 | 137 | 77 | 4 | 24 | 154 | 12 | 148 | 1.00e-23 | 90.9 |
| MS.gene023191.t1 | MTR_2g084525 | 37.956 | 137 | 79 | 4 | 24 | 154 | 6 | 142 | 3.53e-23 | 91.7 |
| MS.gene023191.t1 | MTR_2g084510 | 35.766 | 137 | 82 | 4 | 24 | 154 | 5 | 141 | 3.97e-22 | 89.0 |
| MS.gene023191.t1 | MTR_2g060500 | 38.235 | 136 | 78 | 4 | 24 | 153 | 12 | 147 | 5.10e-22 | 86.3 |
| MS.gene023191.t1 | MTR_8g105930 | 32.432 | 148 | 83 | 4 | 24 | 155 | 15 | 161 | 1.91e-19 | 81.6 |
| MS.gene023191.t1 | MTR_5g077740 | 29.412 | 153 | 96 | 4 | 5 | 151 | 2 | 148 | 8.30e-16 | 71.2 |
| MS.gene023191.t1 | MTR_8g097310 | 38.776 | 98 | 49 | 4 | 60 | 152 | 4 | 95 | 3.12e-13 | 63.5 |
| MS.gene023191.t1 | MTR_1g032880 | 39.326 | 89 | 48 | 3 | 66 | 152 | 26 | 110 | 1.70e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023191.t1 | AT1G31040 | 73.881 | 134 | 29 | 1 | 21 | 154 | 18 | 145 | 1.98e-71 | 215 |
| MS.gene023191.t1 | AT3G60670 | 58.394 | 137 | 52 | 1 | 16 | 152 | 1 | 132 | 2.18e-54 | 172 |
| MS.gene023191.t1 | AT2G12646 | 58.519 | 135 | 51 | 1 | 20 | 154 | 4 | 133 | 2.05e-52 | 167 |
| MS.gene023191.t1 | AT2G12646 | 58.519 | 135 | 51 | 1 | 20 | 154 | 4 | 133 | 2.05e-52 | 167 |
| MS.gene023191.t1 | AT2G12646 | 58.209 | 134 | 51 | 1 | 21 | 154 | 2 | 130 | 1.00e-51 | 165 |
| MS.gene023191.t1 | AT2G01818 | 45.833 | 144 | 73 | 2 | 17 | 155 | 6 | 149 | 6.34e-38 | 129 |
| MS.gene023191.t1 | AT2G27930 | 43.662 | 142 | 74 | 3 | 20 | 155 | 2 | 143 | 4.52e-33 | 115 |
| MS.gene023191.t1 | AT2G27930 | 43.662 | 142 | 74 | 3 | 20 | 155 | 2 | 143 | 4.52e-33 | 115 |
| MS.gene023191.t1 | AT1G32700 | 43.939 | 132 | 68 | 2 | 22 | 152 | 12 | 138 | 6.07e-32 | 113 |
| MS.gene023191.t1 | AT4G17900 | 44.118 | 136 | 69 | 3 | 19 | 152 | 31 | 161 | 1.13e-31 | 113 |
| MS.gene023191.t1 | AT4G17900 | 44.118 | 136 | 69 | 3 | 19 | 152 | 17 | 147 | 1.32e-31 | 112 |
| MS.gene023191.t1 | AT2G27930 | 43.885 | 139 | 72 | 3 | 20 | 152 | 2 | 140 | 1.66e-31 | 112 |
| MS.gene023191.t1 | AT2G27930 | 43.885 | 139 | 72 | 3 | 20 | 152 | 2 | 140 | 1.66e-31 | 112 |
| MS.gene023191.t1 | AT1G21000 | 43.182 | 132 | 69 | 2 | 22 | 152 | 13 | 139 | 1.71e-31 | 113 |
| MS.gene023191.t1 | AT1G21000 | 43.182 | 132 | 69 | 2 | 22 | 152 | 16 | 142 | 1.73e-31 | 113 |
| MS.gene023191.t1 | AT1G76590 | 43.182 | 132 | 69 | 2 | 22 | 152 | 18 | 144 | 1.95e-30 | 110 |
| MS.gene023191.t1 | AT1G43000 | 40.909 | 132 | 72 | 2 | 22 | 152 | 16 | 142 | 2.78e-28 | 104 |
| MS.gene023191.t1 | AT1G43000 | 40.909 | 132 | 72 | 2 | 22 | 152 | 9 | 135 | 3.16e-28 | 104 |
| MS.gene023191.t1 | AT5G46710 | 40.288 | 139 | 76 | 3 | 19 | 155 | 25 | 158 | 4.69e-28 | 102 |
| MS.gene023191.t1 | AT5G46710 | 41.176 | 136 | 73 | 3 | 19 | 152 | 9 | 139 | 3.88e-27 | 101 |
| MS.gene023191.t1 | AT5G46710 | 41.176 | 136 | 73 | 3 | 19 | 152 | 25 | 155 | 4.32e-27 | 101 |
| MS.gene023191.t1 | AT1G32700 | 44.231 | 104 | 52 | 2 | 50 | 152 | 1 | 99 | 4.71e-23 | 89.7 |
| MS.gene023191.t1 | AT2G01818 | 48.750 | 80 | 40 | 1 | 77 | 155 | 6 | 85 | 2.26e-20 | 82.4 |
| MS.gene023191.t1 | AT2G27930 | 47.059 | 85 | 41 | 1 | 72 | 152 | 59 | 143 | 2.40e-18 | 77.8 |
| MS.gene023191.t1 | AT2G27930 | 47.059 | 85 | 41 | 1 | 72 | 152 | 59 | 143 | 2.40e-18 | 77.8 |
Find 49 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCCTTTGCTTCTGATGA+TGG | 0.298330 | 4.3:-18576072 | None:intergenic |
| TTCGCACCGTTAATCGTATA+TGG | 0.314823 | 4.3:-18578591 | None:intergenic |
| TTAATGGGTGAGACATTCTT+TGG | 0.323122 | 4.3:+18576132 | MS.gene023191:CDS |
| CCCCTCTCATCCCCTCCTTC+AGG | 0.332528 | 4.3:+18576251 | MS.gene023191:CDS |
| GGGGATGAGAGGGGTGAGAA+GGG | 0.369978 | 4.3:-18576242 | None:intergenic |
| CACTTGTGACAGGATTCTTC+AGG | 0.373696 | 4.3:+18578692 | MS.gene023191:CDS |
| AGGGGATGAGAGGGGTGAGA+AGG | 0.396086 | 4.3:-18576243 | None:intergenic |
| TATTTGTTTGACCTGAATAT+AGG | 0.411844 | 4.3:-18578415 | None:intergenic |
| CATCGATTGCTCCTATATTC+AGG | 0.420826 | 4.3:+18578404 | MS.gene023191:CDS |
| TAATGGGTGAGACATTCTTT+GGG | 0.422434 | 4.3:+18576133 | MS.gene023191:CDS |
| CTCCCTTTGCTTCTGATGAT+GGG | 0.428222 | 4.3:-18576071 | None:intergenic |
| TGCATGGTTAGAGAGGTTAA+TGG | 0.448349 | 4.3:+18576116 | MS.gene023191:CDS |
| TTACCATGACGTGGTTCAAT+TGG | 0.448712 | 4.3:+18578365 | MS.gene023191:CDS |
| ACTCTTGCTGCACTTGTGAC+AGG | 0.455565 | 4.3:+18578682 | MS.gene023191:CDS |
| TGCATGAGAGAGAACAGAAA+TGG | 0.467641 | 4.3:-18578722 | None:intergenic |
| GGGTGAGACATGAGAGGAAG+TGG | 0.470262 | 4.3:+18576042 | None:intergenic |
| GCATGGTTAGAGAGGTTAAT+GGG | 0.474331 | 4.3:+18576117 | MS.gene023191:CDS |
| ACCTGAAGGAGGGGATGAGA+GGG | 0.482275 | 4.3:-18576252 | None:intergenic |
| AGGGAGACAGTGAGGGCAGA+TGG | 0.494496 | 4.3:-18576223 | None:intergenic |
| ATGCAGCCATATACGATTAA+CGG | 0.494856 | 4.3:+18578585 | MS.gene023191:intron |
| TACCATGACGTGGTTCAATT+GGG | 0.505968 | 4.3:+18578366 | MS.gene023191:CDS |
| TACCTGAAGGAGGGGATGAG+AGG | 0.543545 | 4.3:-18576253 | None:intergenic |
| AATGGGTGAGACATTCTTTG+GGG | 0.548115 | 4.3:+18576134 | MS.gene023191:CDS |
| GTCACAAGTGCAGCAAGAGT+TGG | 0.556394 | 4.3:-18578679 | None:intergenic |
| GGGTGAGAAGGGAGACAGTG+AGG | 0.556701 | 4.3:-18576231 | None:intergenic |
| GGTGAGAAGGGAGACAGTGA+GGG | 0.559740 | 4.3:-18576230 | None:intergenic |
| TGACCCATCATCAGAAGCAA+AGG | 0.564164 | 4.3:+18576068 | MS.gene023191:CDS |
| TAAATGAGAGGGTGCAGTCA+AGG | 0.569301 | 4.3:+18578625 | MS.gene023191:CDS |
| GACCCATCATCAGAAGCAAA+GGG | 0.572363 | 4.3:+18576069 | MS.gene023191:CDS |
| TTTCTGTTCTCTCTCATGCA+AGG | 0.584910 | 4.3:+18578725 | MS.gene023191:CDS |
| TGAGAGAGAACAGAAATGGA+AGG | 0.587138 | 4.3:-18578718 | None:intergenic |
| GCCATATTGTGCAGGTGAGA+AGG | 0.589373 | 4.3:+18578337 | MS.gene023191:intron |
| ATTAACCTCTCTAACCATGC+AGG | 0.589991 | 4.3:-18576114 | None:intergenic |
| GTTAGTAGTACCTGAAGGAG+GGG | 0.591333 | 4.3:-18576261 | None:intergenic |
| AAGTTAGTAGTACCTGAAGG+AGG | 0.592377 | 4.3:-18576263 | None:intergenic |
| AGTGATATTCTTAAATGAGA+GGG | 0.594917 | 4.3:+18578614 | MS.gene023191:CDS |
| AAGTGATATTCTTAAATGAG+AGG | 0.602594 | 4.3:+18578613 | MS.gene023191:CDS |
| AGTTAGTAGTACCTGAAGGA+GGG | 0.604029 | 4.3:-18576262 | None:intergenic |
| AGAAACCTGCATGGTTAGAG+AGG | 0.605580 | 4.3:+18576109 | MS.gene023191:CDS |
| ATGGGTGAGACATTCTTTGG+GGG | 0.616331 | 4.3:+18576135 | MS.gene023191:CDS |
| AGTGCAGCAAGAGTTGGCAT+TGG | 0.622670 | 4.3:-18578673 | None:intergenic |
| CACCCAATTGAACCACGTCA+TGG | 0.626928 | 4.3:-18578368 | None:intergenic |
| GAGAGAGAACAGAAATGGAA+GGG | 0.627838 | 4.3:-18578717 | None:intergenic |
| CCTGAAGGAGGGGATGAGAG+GGG | 0.636429 | 4.3:-18576251 | None:intergenic |
| GTGCAGTCAAGGTCATGCAA+AGG | 0.664808 | 4.3:+18578636 | MS.gene023191:CDS |
| AAGTGAATCAGAAACCTGCA+TGG | 0.669083 | 4.3:+18576100 | MS.gene023191:CDS |
| TGAGACAACAGTGCAAACAA+AGG | 0.686217 | 4.3:-18576200 | None:intergenic |
| AAGGTATGTTTACCATGACG+TGG | 0.686416 | 4.3:+18578356 | MS.gene023191:CDS |
| GTTGTGGGGTGAGACATGAG+AGG | 0.704900 | 4.3:+18576036 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATTATTATTAT+AGG | + | chr4.3:18576947-18576966 | MS.gene023191:intron | 0.0% |
| !!! | TTAATTTAATTTTTATTTTT+TGG | + | chr4.3:18576990-18577009 | MS.gene023191:intron | 0.0% |
| !! | AAATATTATTAAATTTGGTT+CGG | - | chr4.3:18578030-18578049 | None:intergenic | 10.0% |
| !! | CAAATTTAATAATATTTCAT+TGG | + | chr4.3:18578033-18578052 | MS.gene023191:intron | 10.0% |
| !! | CAATGAAATATTATTAAATT+TGG | - | chr4.3:18578035-18578054 | None:intergenic | 10.0% |
| !! | TGTAATAAAGAATAATTTAA+TGG | + | chr4.3:18577565-18577584 | MS.gene023191:intron | 10.0% |
| !!! | AATTAAGTTTAATTTTGTAA+AGG | + | chr4.3:18576714-18576733 | MS.gene023191:intron | 10.0% |
| !!! | CAAAATAAATATTTTTGTTA+AGG | + | chr4.3:18577882-18577901 | MS.gene023191:intron | 10.0% |
| !!! | CTTAACAAAAATATTTATTT+TGG | - | chr4.3:18577884-18577903 | None:intergenic | 10.0% |
| !!! | GATTTTATTTTATTTTCTTA+AGG | - | chr4.3:18577993-18578012 | None:intergenic | 10.0% |
| !!! | TCTTTATTTATTTTTTTTTC+GGG | + | chr4.3:18577486-18577505 | MS.gene023191:intron | 10.0% |
| !!! | TTATTTTTGATAAATTTGAT+AGG | + | chr4.3:18576557-18576576 | MS.gene023191:intron | 10.0% |
| !! | AATATATAGTTAATCTTACA+CGG | - | chr4.3:18577829-18577848 | None:intergenic | 15.0% |
| !! | AGAAATAATTATATATGAGT+TGG | + | chr4.3:18578552-18578571 | MS.gene023191:intron | 15.0% |
| !! | ATTAACAAACTCTATTTAAT+GGG | - | chr4.3:18577405-18577424 | None:intergenic | 15.0% |
| !! | TAAAAATAAAAACTAGAGTT+GGG | - | chr4.3:18577337-18577356 | None:intergenic | 15.0% |
| !! | TGAAAAACAATGATAATTAA+TGG | + | chr4.3:18578505-18578524 | MS.gene023191:intron | 15.0% |
| !!! | AATTTTGTAAAACAACTTAT+AGG | + | chr4.3:18577800-18577819 | MS.gene023191:intron | 15.0% |
| !!! | ATATACTGATATTGATTTTT+GGG | - | chr4.3:18578475-18578494 | None:intergenic | 15.0% |
| !!! | GAATTTTTTGTTTAAACATT+TGG | + | chr4.3:18576750-18576769 | MS.gene023191:intron | 15.0% |
| !!! | TAATTTCTACTTTTATGTTT+TGG | + | chr4.3:18577181-18577200 | MS.gene023191:intron | 15.0% |
| !!! | TATATACTGATATTGATTTT+TGG | - | chr4.3:18578476-18578495 | None:intergenic | 15.0% |
| !!! | TTATTTTATTTTCTTAAGGA+AGG | - | chr4.3:18577989-18578008 | None:intergenic | 15.0% |
| !!! | TTTGTTTGAATTTTATAAGA+AGG | - | chr4.3:18576837-18576856 | None:intergenic | 15.0% |
| !! | AAACAATGATAATTAATGGA+TGG | + | chr4.3:18578509-18578528 | MS.gene023191:intron | 20.0% |
| !! | AAGTTTGGTTAATGTTATAT+TGG | - | chr4.3:18577374-18577393 | None:intergenic | 20.0% |
| !! | ACAAAATTATAGTACAAATG+AGG | - | chr4.3:18578251-18578270 | None:intergenic | 20.0% |
| !! | CAAAAAATAAATAGAGTGAT+AGG | - | chr4.3:18577694-18577713 | None:intergenic | 20.0% |
| !! | CAAAATTATAGTACAAATGA+GGG | - | chr4.3:18578250-18578269 | None:intergenic | 20.0% |
| !! | CATTAACAAACTCTATTTAA+TGG | - | chr4.3:18577406-18577425 | None:intergenic | 20.0% |
| !! | CTAAAAATAAAAACTAGAGT+TGG | - | chr4.3:18577338-18577357 | None:intergenic | 20.0% |
| !! | TAGAAATAGAATACTATGTT+AGG | + | chr4.3:18578164-18578183 | MS.gene023191:intron | 20.0% |
| !! | TATTTGCAAATTAATTCATG+TGG | + | chr4.3:18576328-18576347 | MS.gene023191:intron | 20.0% |
| !! | TTTGTGATGATATGTAAATA+TGG | + | chr4.3:18578195-18578214 | MS.gene023191:intron | 20.0% |
| !!! | CAACTCTAGTTTTTATTTTT+AGG | + | chr4.3:18577336-18577355 | MS.gene023191:intron | 20.0% |
| !!! | TAATTATATATGAGTTGGTT+TGG | + | chr4.3:18578557-18578576 | MS.gene023191:intron | 20.0% |
| !!! | TCACTCTATTTATTTTTTGA+AGG | + | chr4.3:18577695-18577714 | MS.gene023191:intron | 20.0% |
| ! | AAAACCAATCATAGACAATT+TGG | - | chr4.3:18576595-18576614 | None:intergenic | 25.0% |
| ! | AAGTGATATTCTTAAATGAG+AGG | + | chr4.3:18578613-18578632 | MS.gene023191:CDS | 25.0% |
| ! | AATTGGAAGACCATATATAT+AGG | - | chr4.3:18576457-18576476 | None:intergenic | 25.0% |
| ! | ACAGAAAAATAAAGGAAATC+TGG | - | chr4.3:18576865-18576884 | None:intergenic | 25.0% |
| ! | AGAATAAAGTAATGATCCAA+AGG | - | chr4.3:18576408-18576427 | None:intergenic | 25.0% |
| ! | AGTGATATTCTTAAATGAGA+GGG | + | chr4.3:18578614-18578633 | MS.gene023191:CDS | 25.0% |
| ! | ATAATGTGTGACAATAATTG+AGG | + | chr4.3:18578300-18578319 | MS.gene023191:intron | 25.0% |
| ! | CAATTATTGTCACACATTAT+TGG | - | chr4.3:18578300-18578319 | None:intergenic | 25.0% |
| ! | GAAATTAATCATACAAGACA+TGG | - | chr4.3:18577168-18577187 | None:intergenic | 25.0% |
| ! | TAATGGGATAAATCAAAGTT+TGG | - | chr4.3:18577389-18577408 | None:intergenic | 25.0% |
| ! | TACTAACTTAACTTCTGTTA+TGG | + | chr4.3:18576277-18576296 | MS.gene023191:intron | 25.0% |
| ! | TATTTGTTTGACCTGAATAT+AGG | - | chr4.3:18578418-18578437 | None:intergenic | 25.0% |
| ! | TTTCATTTGGAGATGATTAA+AGG | - | chr4.3:18577522-18577541 | None:intergenic | 25.0% |
| ! | TTTCGAGAAAAAGAATTTGA+AGG | - | chr4.3:18576663-18576682 | None:intergenic | 25.0% |
| !!! | AGATTTCCTTTATTTTTCTG+TGG | + | chr4.3:18576864-18576883 | MS.gene023191:intron | 25.0% |
| !!! | GATTTCCTTTATTTTTCTGT+GGG | + | chr4.3:18576865-18576884 | MS.gene023191:intron | 25.0% |
| !!! | TATTATTAAATTTGGTTCGG+TGG | - | chr4.3:18578027-18578046 | None:intergenic | 25.0% |
| !!! | TGAAGGAAGTATTTAGAAAT+AGG | - | chr4.3:18576646-18576665 | None:intergenic | 25.0% |
| AAAAAGGGATCTTCCATTAA+TGG | - | chr4.3:18577215-18577234 | None:intergenic | 30.0% | |
| AAAAGGGATCTTCCATTAAT+GGG | - | chr4.3:18577214-18577233 | None:intergenic | 30.0% | |
| AAAGGAAAAGAAACATCCAA+AGG | - | chr4.3:18576390-18576409 | None:intergenic | 30.0% | |
| AATGAAATGTGACAGTTTCT+GGG | - | chr4.3:18578075-18578094 | None:intergenic | 30.0% | |
| AGAAAGACAGAAGAAGAATT+CGG | - | chr4.3:18577289-18577308 | None:intergenic | 30.0% | |
| AGGGGAAATTGGATAAAAAA+AGG | - | chr4.3:18577231-18577250 | None:intergenic | 30.0% | |
| ATATGGTCTTCCAATTAATG+AGG | + | chr4.3:18576461-18576480 | MS.gene023191:intron | 30.0% | |
| CAAACACAATGAGACAAAAT+TGG | - | chr4.3:18577077-18577096 | None:intergenic | 30.0% | |
| GGGGAAATTGGATAAAAAAA+GGG | - | chr4.3:18577230-18577249 | None:intergenic | 30.0% | |
| GTTCAAAAGACCTCATTAAT+TGG | - | chr4.3:18576474-18576493 | None:intergenic | 30.0% | |
| GTTTGTCTCAAATTAGAAGT+CGG | + | chr4.3:18577623-18577642 | MS.gene023191:intron | 30.0% | |
| TTCAGATGCACCTATATATA+TGG | + | chr4.3:18576444-18576463 | MS.gene023191:intron | 30.0% | |
| TTCTCGAAATCTTTCTACTA+CGG | + | chr4.3:18576674-18576693 | MS.gene023191:intron | 30.0% | |
| TTTGCCAAATTGTCTATGAT+TGG | + | chr4.3:18576588-18576607 | MS.gene023191:intron | 30.0% | |
| ! | AAACTTTTATAACCTGGTAC+AGG | - | chr4.3:18577607-18577626 | None:intergenic | 30.0% |
| ! | ACATGGATTTATGCTTTGTT+TGG | + | chr4.3:18576618-18576637 | MS.gene023191:intron | 30.0% |
| ! | ATCGACTCCAAAATTTCAAA+GGG | + | chr4.3:18576305-18576324 | MS.gene023191:intron | 30.0% |
| ! | TGAGACAAACTTTTATAACC+TGG | - | chr4.3:18577613-18577632 | None:intergenic | 30.0% |
| ! | TTTGGATGTTTCTTTTCCTT+TGG | + | chr4.3:18576389-18576408 | MS.gene023191:intron | 30.0% |
| ! | TTTGGTTTCTTTCCCATTAA+TGG | + | chr4.3:18577199-18577218 | MS.gene023191:intron | 30.0% |
| !! | ATATATGAGTTGGTTTGGAA+TGG | + | chr4.3:18578562-18578581 | MS.gene023191:intron | 30.0% |
| !! | TATCGACTCCAAAATTTCAA+AGG | + | chr4.3:18576304-18576323 | MS.gene023191:intron | 30.0% |
| !!! | CTATGATTGGTTTTATGACA+TGG | + | chr4.3:18576601-18576620 | MS.gene023191:intron | 30.0% |
| !!! | GCAAATACCCTTTGAAATTT+TGG | - | chr4.3:18576315-18576334 | None:intergenic | 30.0% |
| !!! | TAGCACTTCTTTTTTTCCTT+TGG | + | chr4.3:18576371-18576390 | MS.gene023191:intron | 30.0% |
| !!! | TGGTTTTCTAGAATTGACAA+GGG | + | chr4.3:18577010-18577029 | MS.gene023191:intron | 30.0% |
| !!! | TTGAAATTTTGGAGTCGATA+AGG | - | chr4.3:18576304-18576323 | None:intergenic | 30.0% |
| !!! | TTGGTTTTCTAGAATTGACA+AGG | + | chr4.3:18577009-18577028 | MS.gene023191:intron | 30.0% |
| !!! | TTTTCCACTTTTTGTTTTCC+AGG | + | chr4.3:18577134-18577153 | MS.gene023191:intron | 30.0% |
| AAAAACTAGAGTTGGGAAGT+AGG | - | chr4.3:18577330-18577349 | None:intergenic | 35.0% | |
| AAAACTAGAGTTGGGAAGTA+GGG | - | chr4.3:18577329-18577348 | None:intergenic | 35.0% | |
| AAGCATCAACAGTGATATCT+GGG | - | chr4.3:18577106-18577125 | None:intergenic | 35.0% | |
| AAGCTTTCGCTTTCAATGAA+AGG | - | chr4.3:18577262-18577281 | None:intergenic | 35.0% | |
| ATGCAGCCATATACGATTAA+CGG | + | chr4.3:18578585-18578604 | MS.gene023191:intron | 35.0% | |
| CATTTGGAGATGATTAAAGG+TGG | - | chr4.3:18577519-18577538 | None:intergenic | 35.0% | |
| CGAATCCCACAGAAAAATAA+AGG | - | chr4.3:18576873-18576892 | None:intergenic | 35.0% | |
| GAAAGACAGAAGAAGAATTC+GGG | - | chr4.3:18577288-18577307 | None:intergenic | 35.0% | |
| GAATGAAATGTGACAGTTTC+TGG | - | chr4.3:18578076-18578095 | None:intergenic | 35.0% | |
| GTTAAGTTAGTAGTACCTGA+AGG | - | chr4.3:18576269-18576288 | None:intergenic | 35.0% | |
| TAAGCATCAACAGTGATATC+TGG | - | chr4.3:18577107-18577126 | None:intergenic | 35.0% | |
| ! | CTGTCTTTCTACTTCAAGTT+TGG | + | chr4.3:18577299-18577318 | MS.gene023191:intron | 35.0% |
| ! | TAATGGGTGAGACATTCTTT+GGG | + | chr4.3:18576133-18576152 | MS.gene023191:CDS | 35.0% |
| ! | TGTTCTTTTCGTTCTTCCTT+TGG | - | chr4.3:18576179-18576198 | None:intergenic | 35.0% |
| ! | TTAATGGGTGAGACATTCTT+TGG | + | chr4.3:18576132-18576151 | MS.gene023191:CDS | 35.0% |
| AAGGTATGTTTACCATGACG+TGG | + | chr4.3:18578356-18578375 | MS.gene023191:CDS | 40.0% | |
| AAGTGAATCAGAAACCTGCA+TGG | + | chr4.3:18576100-18576119 | MS.gene023191:CDS | 40.0% | |
| AAGTTAGTAGTACCTGAAGG+AGG | - | chr4.3:18576266-18576285 | None:intergenic | 40.0% | |
| AATGGGTGAGACATTCTTTG+GGG | + | chr4.3:18576134-18576153 | MS.gene023191:CDS | 40.0% | |
| AATTGGTCACTAGTGTCTAG+TGG | - | chr4.3:18577060-18577079 | None:intergenic | 40.0% | |
| AGTTAGTAGTACCTGAAGGA+GGG | - | chr4.3:18576265-18576284 | None:intergenic | 40.0% | |
| ATTAACCTCTCTAACCATGC+AGG | - | chr4.3:18576117-18576136 | None:intergenic | 40.0% | |
| GAGAGAGAACAGAAATGGAA+GGG | - | chr4.3:18578720-18578739 | None:intergenic | 40.0% | |
| GCATGGTTAGAGAGGTTAAT+GGG | + | chr4.3:18576117-18576136 | MS.gene023191:CDS | 40.0% | |
| TACCATGACGTGGTTCAATT+GGG | + | chr4.3:18578366-18578385 | MS.gene023191:CDS | 40.0% | |
| TCAATGAAAGGAACGTTGCA+GGG | - | chr4.3:18577250-18577269 | None:intergenic | 40.0% | |
| TGAGACAACAGTGCAAACAA+AGG | - | chr4.3:18576203-18576222 | None:intergenic | 40.0% | |
| TGAGAGAGAACAGAAATGGA+AGG | - | chr4.3:18578721-18578740 | None:intergenic | 40.0% | |
| TGCATGAGAGAGAACAGAAA+TGG | - | chr4.3:18578725-18578744 | None:intergenic | 40.0% | |
| TGCATGGTTAGAGAGGTTAA+TGG | + | chr4.3:18576116-18576135 | MS.gene023191:CDS | 40.0% | |
| TTACCATGACGTGGTTCAAT+TGG | + | chr4.3:18578365-18578384 | MS.gene023191:CDS | 40.0% | |
| TTCAATGAAAGGAACGTTGC+AGG | - | chr4.3:18577251-18577270 | None:intergenic | 40.0% | |
| TTCGCACCGTTAATCGTATA+TGG | - | chr4.3:18578594-18578613 | None:intergenic | 40.0% | |
| TTGGAGATGATTAAAGGTGG+AGG | - | chr4.3:18577516-18577535 | None:intergenic | 40.0% | |
| TTTCTGTTCTCTCTCATGCA+AGG | + | chr4.3:18578725-18578744 | MS.gene023191:CDS | 40.0% | |
| ! | AAATGAGGGTATGAGTAAGC+AGG | - | chr4.3:18578236-18578255 | None:intergenic | 40.0% |
| ! | AAGGAGTGTGAGAGTTAAAG+AGG | - | chr4.3:18577970-18577989 | None:intergenic | 40.0% |
| ! | AGGAGTGTGAGAGTTAAAGA+GGG | - | chr4.3:18577969-18577988 | None:intergenic | 40.0% |
| ! | CATCGATTGCTCCTATATTC+AGG | + | chr4.3:18578404-18578423 | MS.gene023191:CDS | 40.0% |
| ! | CTTTTATAACCTGGTACAGG+AGG | - | chr4.3:18577604-18577623 | None:intergenic | 40.0% |
| !! | TTCTAGAATTGACAAGGGCT+TGG | + | chr4.3:18577015-18577034 | MS.gene023191:intron | 40.0% |
| !!! | CCACTTTTTGTTTTCCAGGA+GGG | + | chr4.3:18577138-18577157 | MS.gene023191:intron | 40.0% |
| !!! | CGTTCTTCCTTTGGTTTTTG+TGG | - | chr4.3:18576170-18576189 | None:intergenic | 40.0% |
| !!! | TCCACTTTTTGTTTTCCAGG+AGG | + | chr4.3:18577137-18577156 | MS.gene023191:intron | 40.0% |
| ACCTTCTCACCTGCACAATA+TGG | - | chr4.3:18578341-18578360 | None:intergenic | 45.0% | |
| AGAAACCTGCATGGTTAGAG+AGG | + | chr4.3:18576109-18576128 | MS.gene023191:CDS | 45.0% | |
| ATGGGTGAGACATTCTTTGG+GGG | + | chr4.3:18576135-18576154 | MS.gene023191:CDS | 45.0% | |
| CAATGAAAGGAACGTTGCAG+GGG | - | chr4.3:18577249-18577268 | None:intergenic | 45.0% | |
| CACTTGTGACAGGATTCTTC+AGG | + | chr4.3:18578692-18578711 | MS.gene023191:CDS | 45.0% | |
| CCCTCCTGGAAAACAAAAAG+TGG | - | chr4.3:18577141-18577160 | None:intergenic | 45.0% | |
| CTATTGCTGCCATATTGTGC+AGG | + | chr4.3:18578329-18578348 | MS.gene023191:intron | 45.0% | |
| CTCCCTTTGCTTCTGATGAT+GGG | - | chr4.3:18576074-18576093 | None:intergenic | 45.0% | |
| GACCCATCATCAGAAGCAAA+GGG | + | chr4.3:18576069-18576088 | MS.gene023191:CDS | 45.0% | |
| GTTAGTAGTACCTGAAGGAG+GGG | - | chr4.3:18576264-18576283 | None:intergenic | 45.0% | |
| TCTCCCTTTGCTTCTGATGA+TGG | - | chr4.3:18576075-18576094 | None:intergenic | 45.0% | |
| TGACCCATCATCAGAAGCAA+AGG | + | chr4.3:18576068-18576087 | MS.gene023191:CDS | 45.0% | |
| ! | AGACATTCTTTGGGGGTTGT+GGG | + | chr4.3:18576142-18576161 | MS.gene023191:CDS | 45.0% |
| ! | TAAATGAGAGGGTGCAGTCA+AGG | + | chr4.3:18578625-18578644 | MS.gene023191:CDS | 45.0% |
| !! | TTTATAATATTACATAAATA+TGG | - | chr4.3:18577441-18577460 | None:intergenic | 5.0% |
| !!! | AAAATAAATATTTTTGTTAA+GGG | + | chr4.3:18577883-18577902 | MS.gene023191:intron | 5.0% |
| !!! | AATTAATTTAAATTTTCATT+TGG | - | chr4.3:18577535-18577554 | None:intergenic | 5.0% |
| !!! | ATCTTTATTTATTTTTTTTT+CGG | + | chr4.3:18577485-18577504 | MS.gene023191:intron | 5.0% |
| ACTCTTGCTGCACTTGTGAC+AGG | + | chr4.3:18578682-18578701 | MS.gene023191:CDS | 50.0% | |
| AGGAACGTTGCAGGGGAAAT+TGG | - | chr4.3:18577242-18577261 | None:intergenic | 50.0% | |
| AGTGCAGCAAGAGTTGGCAT+TGG | - | chr4.3:18578676-18578695 | None:intergenic | 50.0% | |
| CACCCAATTGAACCACGTCA+TGG | - | chr4.3:18578371-18578390 | None:intergenic | 50.0% | |
| GCCATATTGTGCAGGTGAGA+AGG | + | chr4.3:18578337-18578356 | MS.gene023191:intron | 50.0% | |
| GTCACAAGTGCAGCAAGAGT+TGG | - | chr4.3:18578682-18578701 | None:intergenic | 50.0% | |
| GTGCAGTCAAGGTCATGCAA+AGG | + | chr4.3:18578636-18578655 | MS.gene023191:CDS | 50.0% | |
| GTGGGGTCCACAAAAACCAA+AGG | + | chr4.3:18576160-18576179 | MS.gene023191:CDS | 50.0% | |
| TCACTAGTGTCTAGTGGTGG+TGG | - | chr4.3:18577054-18577073 | None:intergenic | 50.0% | |
| TGGTCACTAGTGTCTAGTGG+TGG | - | chr4.3:18577057-18577076 | None:intergenic | 50.0% | |
| ! | GACATTCTTTGGGGGTTGTG+GGG | + | chr4.3:18576143-18576162 | MS.gene023191:CDS | 50.0% |
| ! | GAGACATTCTTTGGGGGTTG+TGG | + | chr4.3:18576141-18576160 | MS.gene023191:CDS | 50.0% |
| ACCTGAAGGAGGGGATGAGA+GGG | - | chr4.3:18576255-18576274 | None:intergenic | 55.0% | |
| CAAGACATGGTGAACCCTCC+TGG | - | chr4.3:18577155-18577174 | None:intergenic | 55.0% | |
| GGTGAGAAGGGAGACAGTGA+GGG | - | chr4.3:18576233-18576252 | None:intergenic | 55.0% | |
| TACCTGAAGGAGGGGATGAG+AGG | - | chr4.3:18576256-18576275 | None:intergenic | 55.0% | |
| TCTTGCACTCCTCCTGTACC+AGG | + | chr4.3:18577592-18577611 | MS.gene023191:intron | 55.0% | |
| AGGGAGACAGTGAGGGCAGA+TGG | - | chr4.3:18576226-18576245 | None:intergenic | 60.0% | |
| AGGGGATGAGAGGGGTGAGA+AGG | - | chr4.3:18576246-18576265 | None:intergenic | 60.0% | |
| CCTGAAGGAGGGGATGAGAG+GGG | - | chr4.3:18576254-18576273 | None:intergenic | 60.0% | |
| GGGGATGAGAGGGGTGAGAA+GGG | - | chr4.3:18576245-18576264 | None:intergenic | 60.0% | |
| GGGTGAGAAGGGAGACAGTG+AGG | - | chr4.3:18576234-18576253 | None:intergenic | 60.0% | |
| CCCCTCTCATCCCCTCCTTC+AGG | + | chr4.3:18576251-18576270 | MS.gene023191:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 18576051 | 18578761 | 18576051 | ID=MS.gene023191 |
| chr4.3 | mRNA | 18576051 | 18578761 | 18576051 | ID=MS.gene023191.t1;Parent=MS.gene023191 |
| chr4.3 | exon | 18576051 | 18576272 | 18576051 | ID=MS.gene023191.t1.exon1;Parent=MS.gene023191.t1 |
| chr4.3 | CDS | 18576051 | 18576272 | 18576051 | ID=cds.MS.gene023191.t1;Parent=MS.gene023191.t1 |
| chr4.3 | exon | 18578351 | 18578425 | 18578351 | ID=MS.gene023191.t1.exon2;Parent=MS.gene023191.t1 |
| chr4.3 | CDS | 18578351 | 18578425 | 18578351 | ID=cds.MS.gene023191.t1;Parent=MS.gene023191.t1 |
| chr4.3 | exon | 18578591 | 18578761 | 18578591 | ID=MS.gene023191.t1.exon3;Parent=MS.gene023191.t1 |
| chr4.3 | CDS | 18578591 | 18578761 | 18578591 | ID=cds.MS.gene023191.t1;Parent=MS.gene023191.t1 |
| Gene Sequence |
| Protein sequence |
