Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023215.t1 | XP_013457399.1 | 98.6 | 486 | 7 | 0 | 1 | 486 | 1 | 486 | 4.50E-268 | 933.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023215.t1 | Q8GX46 | 36.1 | 502 | 214 | 11 | 11 | 482 | 1 | 425 | 1.8e-68 | 261.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023215.t1 | G8A1V6 | 98.6 | 486 | 7 | 0 | 1 | 486 | 1 | 486 | 3.2e-268 | 933.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene023215.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023215.t1 | MTR_4g094762 | 98.765 | 486 | 6 | 0 | 1 | 486 | 1 | 486 | 0.0 | 997 |
| MS.gene023215.t1 | MTR_1g056700 | 85.714 | 49 | 7 | 0 | 272 | 320 | 11 | 59 | 1.71e-21 | 89.0 |
| MS.gene023215.t1 | MTR_3g498695 | 28.643 | 199 | 129 | 5 | 278 | 470 | 285 | 476 | 3.07e-16 | 81.6 |
| MS.gene023215.t1 | MTR_3g498695 | 28.500 | 200 | 129 | 6 | 278 | 470 | 285 | 477 | 7.66e-15 | 77.0 |
| MS.gene023215.t1 | MTR_0194s0050 | 24.500 | 200 | 134 | 3 | 293 | 477 | 186 | 383 | 2.30e-12 | 68.9 |
| MS.gene023215.t1 | MTR_1g072320 | 30.872 | 149 | 85 | 4 | 293 | 433 | 471 | 609 | 4.24e-12 | 68.9 |
| MS.gene023215.t1 | MTR_8g024790 | 28.049 | 164 | 83 | 5 | 293 | 443 | 292 | 433 | 6.47e-12 | 67.8 |
| MS.gene023215.t1 | MTR_7g083900 | 24.468 | 188 | 129 | 4 | 291 | 470 | 285 | 467 | 2.39e-11 | 66.2 |
| MS.gene023215.t1 | MTR_7g083900 | 24.339 | 189 | 129 | 4 | 291 | 470 | 285 | 468 | 3.02e-11 | 65.9 |
| MS.gene023215.t1 | MTR_8g067280 | 31.579 | 171 | 110 | 3 | 293 | 460 | 463 | 629 | 3.71e-11 | 65.9 |
| MS.gene023215.t1 | MTR_5g030430 | 29.630 | 189 | 117 | 5 | 293 | 471 | 494 | 676 | 9.12e-11 | 64.7 |
| MS.gene023215.t1 | MTR_8g024770 | 30.968 | 155 | 93 | 6 | 293 | 443 | 280 | 424 | 9.85e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023215.t1 | AT2G31210 | 36.187 | 514 | 195 | 12 | 11 | 481 | 1 | 424 | 4.95e-90 | 281 |
| MS.gene023215.t1 | AT2G31220 | 36.257 | 513 | 209 | 15 | 16 | 481 | 2 | 443 | 2.97e-82 | 262 |
| MS.gene023215.t1 | AT2G31220 | 36.257 | 513 | 209 | 15 | 16 | 481 | 13 | 454 | 3.98e-82 | 262 |
| MS.gene023215.t1 | AT1G06170 | 37.423 | 489 | 201 | 17 | 11 | 480 | 6 | 408 | 5.05e-82 | 260 |
| MS.gene023215.t1 | AT1G06170 | 37.423 | 489 | 201 | 17 | 11 | 480 | 6 | 408 | 5.05e-82 | 260 |
| MS.gene023215.t1 | AT2G31215 | 50.704 | 71 | 35 | 0 | 284 | 354 | 15 | 85 | 1.02e-14 | 71.2 |
| MS.gene023215.t1 | AT3G26744 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 2.88e-12 | 69.3 |
| MS.gene023215.t1 | AT3G26744 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 2.88e-12 | 69.3 |
| MS.gene023215.t1 | AT3G26744 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 2.88e-12 | 69.3 |
| MS.gene023215.t1 | AT3G26744 | 27.976 | 168 | 111 | 3 | 291 | 453 | 306 | 468 | 4.11e-12 | 68.6 |
| MS.gene023215.t1 | AT1G32640 | 29.592 | 196 | 102 | 7 | 261 | 437 | 410 | 588 | 4.14e-12 | 68.9 |
| MS.gene023215.t1 | AT1G12860 | 27.439 | 164 | 113 | 3 | 291 | 453 | 266 | 424 | 6.35e-12 | 67.8 |
| MS.gene023215.t1 | AT3G24140 | 25.000 | 204 | 130 | 5 | 293 | 477 | 199 | 398 | 6.67e-12 | 67.8 |
| MS.gene023215.t1 | AT3G24140 | 25.000 | 204 | 130 | 5 | 293 | 477 | 199 | 398 | 8.16e-12 | 67.4 |
| MS.gene023215.t1 | AT5G46760 | 34.459 | 148 | 85 | 4 | 293 | 437 | 416 | 554 | 1.92e-11 | 66.6 |
| MS.gene023215.t1 | AT1G12860 | 29.054 | 148 | 99 | 3 | 291 | 437 | 266 | 408 | 2.08e-11 | 66.2 |
Find 131 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCATTGAATTATGAAAAT+TGG | 0.123720 | 4.3:-18220072 | None:intergenic |
| GATGGAGGGAGATGGGGATA+TGG | 0.225091 | 4.3:+18220283 | MS.gene023215:CDS |
| GACATCAACCTCACTGTCTT+TGG | 0.255758 | 4.3:-18220939 | None:intergenic |
| GTTGTTTGTGTTGTTATCAT+TGG | 0.285682 | 4.3:-18219586 | None:intergenic |
| CAGATAGTTGGTGGTGTTCT+TGG | 0.287318 | 4.3:-18219866 | None:intergenic |
| GGACCCTAGTGTTCAGGATA+TGG | 0.288747 | 4.3:+18219830 | MS.gene023215:CDS |
| GCTGTTTGTGTCCAAGGTTT+TGG | 0.309859 | 4.3:+18221021 | MS.gene023215:CDS |
| GTCATTGAATTATGAAAATT+GGG | 0.338556 | 4.3:-18220071 | None:intergenic |
| AGTGAATGAACTGAAATTAT+TGG | 0.342875 | 4.3:+18220784 | MS.gene023215:CDS |
| AGGGATTGTAGCTTTGGTTA+TGG | 0.348857 | 4.3:-18219923 | None:intergenic |
| TTGGAACTTCATCATGTTGC+AGG | 0.351895 | 4.3:+18221055 | MS.gene023215:CDS |
| CAAAACATGCATGAACAAAA+TGG | 0.364773 | 4.3:+18219519 | MS.gene023215:CDS |
| AGCTGTAACATAAAGCCTTT+TGG | 0.367904 | 4.3:+18220872 | MS.gene023215:CDS |
| TTGTTTACCTTGGTGGGACT+TGG | 0.369352 | 4.3:-18220440 | None:intergenic |
| CTCCACAGCCTCCAGCTCTC+AGG | 0.376170 | 4.3:+18220180 | MS.gene023215:CDS |
| ATTGAACAACAACAAAATCT+TGG | 0.381255 | 4.3:+18219735 | MS.gene023215:CDS |
| ATGGAGGGAGATGGGGATAT+GGG | 0.387229 | 4.3:+18220284 | MS.gene023215:CDS |
| GTGATGAGATGGAGGGAGAT+GGG | 0.388952 | 4.3:+18220276 | MS.gene023215:CDS |
| TGGGAGTGCTGGAATTCAAT+AGG | 0.389828 | 4.3:+18220303 | MS.gene023215:CDS |
| ATGGTTATCCATGTTGTTGT+AGG | 0.394415 | 4.3:-18219775 | None:intergenic |
| TGGTCGAGGGATTGTAGCTT+TGG | 0.400036 | 4.3:-18219929 | None:intergenic |
| GATGTTTCCACTTATACAAA+TGG | 0.405425 | 4.3:+18219690 | MS.gene023215:CDS |
| CAACAGGGTGATTGATGTTA+TGG | 0.412367 | 4.3:+18221258 | MS.gene023215:CDS |
| TTTCTTGGAGACCTTCCAAT+AGG | 0.414923 | 4.3:+18220095 | MS.gene023215:CDS |
| CAAAATCTTGGTTTGAACAT+AGG | 0.414981 | 4.3:+18219747 | MS.gene023215:CDS |
| TTTCTCAGTTGCAAAATGTT+TGG | 0.419556 | 4.3:-18220366 | None:intergenic |
| TTGTTTGTGTTGTTATCATT+GGG | 0.420602 | 4.3:-18219585 | None:intergenic |
| GATATTGTTGTTCAGATAGT+TGG | 0.421325 | 4.3:-18219878 | None:intergenic |
| TTGCTTGCTGTTTGTGTCCA+AGG | 0.421896 | 4.3:+18221015 | MS.gene023215:CDS |
| AAAATCTTGGTTTGAACATA+GGG | 0.427616 | 4.3:+18219748 | MS.gene023215:CDS |
| TCCCTGAGAGCTGGAGGCTG+TGG | 0.430359 | 4.3:-18220182 | None:intergenic |
| ACACCTTCATCCATTGTGTT+GGG | 0.431032 | 4.3:-18219552 | None:intergenic |
| CAACAACATGGATAACCATT+TGG | 0.435263 | 4.3:+18219779 | MS.gene023215:CDS |
| GAGTTGGGACCCTAGTGTTC+AGG | 0.436779 | 4.3:+18219824 | MS.gene023215:CDS |
| GGTGATGAGATGGAGGGAGA+TGG | 0.442415 | 4.3:+18220275 | MS.gene023215:CDS |
| ATGCAAGTGCTATAGCCAAC+AGG | 0.446313 | 4.3:+18221242 | MS.gene023215:CDS |
| GAGGTTCTTATACTTCCATC+TGG | 0.453935 | 4.3:-18220899 | None:intergenic |
| GTGTTGTCTGATGATCCTAT+TGG | 0.454473 | 4.3:-18220110 | None:intergenic |
| AGTGAATCCATTTGTATAAG+TGG | 0.457197 | 4.3:-18219697 | None:intergenic |
| AGATGGGGATATGGGAGTGC+TGG | 0.457752 | 4.3:+18220292 | MS.gene023215:CDS |
| ATGCCAACCAACTCGAGAAA+TGG | 0.461019 | 4.3:+18220236 | MS.gene023215:CDS |
| AAGAGAACCATTTCTCGAGT+TGG | 0.464839 | 4.3:-18220243 | None:intergenic |
| ATAGCAATGAGTTCAGGTTC+AGG | 0.465445 | 4.3:+18219489 | None:intergenic |
| AACACCTTCATCCATTGTGT+TGG | 0.467861 | 4.3:-18219553 | None:intergenic |
| CAAAGAAGAGAGCAATTGAA+TGG | 0.475530 | 4.3:+18220389 | MS.gene023215:CDS |
| TAACATCATCATCGATAATC+CGG | 0.477440 | 4.3:-18220961 | None:intergenic |
| GATACACTTCTTGTACCAAA+TGG | 0.479122 | 4.3:-18219794 | None:intergenic |
| AATTATTGGTGGAGAAGAAA+AGG | 0.486241 | 4.3:+18220798 | MS.gene023215:CDS |
| TTATTGTTGTTTACCTTGGT+GGG | 0.486440 | 4.3:-18220446 | None:intergenic |
| TGGAGAAGAAAAGGCATGGA+AGG | 0.486907 | 4.3:+18220807 | MS.gene023215:CDS |
| CAAACTGTTTCAGAGGAAGA+AGG | 0.489618 | 4.3:+18220988 | MS.gene023215:CDS |
| AGTTGGGTTTGTCATGCAAA+TGG | 0.490408 | 4.3:-18220039 | None:intergenic |
| TTTATTGTTGTTTACCTTGG+TGG | 0.495717 | 4.3:-18220447 | None:intergenic |
| GCTTCTGTTGGCAAAGGAAG+AGG | 0.497466 | 4.3:+18220332 | MS.gene023215:CDS |
| TGGTGGAGGTGATGAGATGG+AGG | 0.498303 | 4.3:+18220268 | MS.gene023215:CDS |
| CTTCCATCTGGATCACCAAA+AGG | 0.498543 | 4.3:-18220887 | None:intergenic |
| GGGAGTGCTGGAATTCAATA+GGG | 0.499086 | 4.3:+18220304 | MS.gene023215:CDS |
| GGAAGGTTCAAAGGATATAG+AGG | 0.514568 | 4.3:-18220158 | None:intergenic |
| TTGAGAAGGTTAAGGACATC+CGG | 0.515412 | 4.3:-18219975 | None:intergenic |
| AGACAAATAGCAATGAGTTC+AGG | 0.516206 | 4.3:+18219483 | None:intergenic |
| CTGAGAGCTGGAGGCTGTGG+AGG | 0.518825 | 4.3:-18220179 | None:intergenic |
| TGTTTACCTTGGTGGGACTT+GGG | 0.518905 | 4.3:-18220439 | None:intergenic |
| AGTGTATCAGAACTCGAGTT+GGG | 0.519237 | 4.3:+18219809 | MS.gene023215:CDS |
| AGCATCTAGGTAAGTTGAGA+AGG | 0.519406 | 4.3:-18219989 | None:intergenic |
| GACTACAGCCTACTTATATG+TGG | 0.520235 | 4.3:-18221304 | None:intergenic |
| TCCACAGCCTCCAGCTCTCA+GGG | 0.522645 | 4.3:+18220181 | MS.gene023215:CDS |
| AGACCCTCATTACCCTTCAC+CGG | 0.523695 | 4.3:+18219956 | MS.gene023215:CDS |
| TAGTTTCTTGTTCAATAGCA+AGG | 0.524699 | 4.3:+18221099 | MS.gene023215:CDS |
| TGATGAGATGGAGGGAGATG+GGG | 0.524823 | 4.3:+18220277 | MS.gene023215:CDS |
| GAGCTGGAGGCTGTGGAGGA+AGG | 0.524927 | 4.3:-18220175 | None:intergenic |
| AATAGGGTCACTGCTTCTGT+TGG | 0.528001 | 4.3:+18220320 | MS.gene023215:CDS |
| TGAAACAATTCCCTGAGAGC+TGG | 0.529234 | 4.3:-18220191 | None:intergenic |
| GAATTTCAAGCCTTCTGTAG+AGG | 0.532912 | 4.3:+18219626 | MS.gene023215:CDS |
| CTGAAGTTCATCCAAAACCT+TGG | 0.538751 | 4.3:-18221032 | None:intergenic |
| ATTGTTGTTCAGATAGTTGG+TGG | 0.547721 | 4.3:-18219875 | None:intergenic |
| GGCTGTGGAGGAAGGTTCAA+AGG | 0.549237 | 4.3:-18220167 | None:intergenic |
| TAGGTAAGTTGAGAAGGTTA+AGG | 0.550958 | 4.3:-18219983 | None:intergenic |
| ATGAGGGTCTAGAATGGTCG+AGG | 0.552417 | 4.3:-18219943 | None:intergenic |
| CAGGTCTTCCACATATAAGT+AGG | 0.553461 | 4.3:+18221296 | MS.gene023215:CDS |
| ACATCCGGTGAAGGGTAATG+AGG | 0.553656 | 4.3:-18219960 | None:intergenic |
| GATCCCAACACAATGGATGA+AGG | 0.553830 | 4.3:+18219549 | MS.gene023215:CDS |
| GAACCATTTCTCGAGTTGGT+TGG | 0.554382 | 4.3:-18220239 | None:intergenic |
| TTTGTCATGCAAATGGTGGA+TGG | 0.555450 | 4.3:-18220032 | None:intergenic |
| TGGAAAGTACAAAATCTTGA+GGG | 0.560743 | 4.3:+18220409 | MS.gene023215:CDS |
| GGAGAAGAAAAGGCATGGAA+GGG | 0.561748 | 4.3:+18220808 | MS.gene023215:CDS |
| AGGTTAAGGACATCCGGTGA+AGG | 0.563045 | 4.3:-18219969 | None:intergenic |
| TAATCCATATCCTGAACACT+AGG | 0.565325 | 4.3:-18219834 | None:intergenic |
| AAGACAGTGAGGTTGATGTC+CGG | 0.567804 | 4.3:+18220942 | MS.gene023215:CDS |
| ATGGAAAGTACAAAATCTTG+AGG | 0.570741 | 4.3:+18220408 | MS.gene023215:CDS |
| CATGTTGCAGGTGGACATGT+TGG | 0.572375 | 4.3:+18221067 | MS.gene023215:CDS |
| TTACAATCAAACTGTTTCAG+AGG | 0.573969 | 4.3:+18220981 | MS.gene023215:CDS |
| ATTGAATTATGAAAATTGGG+TGG | 0.575295 | 4.3:-18220068 | None:intergenic |
| AGCAAAGATGAAGAGCATCT+AGG | 0.580041 | 4.3:-18220002 | None:intergenic |
| GTCACTGCTTCTGTTGGCAA+AGG | 0.580434 | 4.3:+18220326 | MS.gene023215:CDS |
| ACTGATAGAGCATCAGTGGT+TGG | 0.582304 | 4.3:+18220725 | MS.gene023215:CDS |
| AACAATTCCCTGAGAGCTGG+AGG | 0.583698 | 4.3:-18220188 | None:intergenic |
| TTGGTGGAGAAGAAAAGGCA+TGG | 0.589624 | 4.3:+18220803 | MS.gene023215:CDS |
| ATGGACACACAATATGCAGC+AGG | 0.590966 | 4.3:+18221277 | MS.gene023215:CDS |
| AGGGTAATGAGGGTCTAGAA+TGG | 0.594794 | 4.3:-18219949 | None:intergenic |
| GAATGAACTGAAATTATTGG+TGG | 0.601922 | 4.3:+18220787 | MS.gene023215:CDS |
| AAGTGTATCAGAACTCGAGT+TGG | 0.603471 | 4.3:+18219808 | MS.gene023215:CDS |
| TTGTTCAATGTCTACTGATG+AGG | 0.603690 | 4.3:-18219721 | None:intergenic |
| GGATTTCCTCTGCAGCCATG+AGG | 0.604351 | 4.3:-18220918 | None:intergenic |
| TATAAGTGGAAACATCATCA+AGG | 0.606570 | 4.3:-18219683 | None:intergenic |
| GGTTAAGGACATCCGGTGAA+GGG | 0.607008 | 4.3:-18219968 | None:intergenic |
| TAAGAACCTCATGGCTGCAG+AGG | 0.607611 | 4.3:+18220912 | MS.gene023215:CDS |
| GAACTTCATCATGTTGCAGG+TGG | 0.610349 | 4.3:+18221058 | MS.gene023215:CDS |
| CATAACATCAATCACCCTGT+TGG | 0.611438 | 4.3:-18221257 | None:intergenic |
| CATCCGGTGAAGGGTAATGA+GGG | 0.612093 | 4.3:-18219959 | None:intergenic |
| AGACAACACAAGCGGATCAT+CGG | 0.616516 | 4.3:+18220124 | MS.gene023215:CDS |
| TAAGGTAGTTCCTCTACAGA+AGG | 0.616975 | 4.3:-18219636 | None:intergenic |
| TGGGTTTGTCATGCAAATGG+TGG | 0.620066 | 4.3:-18220036 | None:intergenic |
| GCAGACTGATAGAGCATCAG+TGG | 0.620695 | 4.3:+18220721 | MS.gene023215:intron |
| TGTTCAATGTCTACTGATGA+GGG | 0.621545 | 4.3:-18219720 | None:intergenic |
| AAGGCTTGAAATTCTCGTCA+AGG | 0.622448 | 4.3:-18219617 | None:intergenic |
| TGTCTGATGATCCTATTGGA+AGG | 0.634988 | 4.3:-18220106 | None:intergenic |
| GGTGGAGGTGATGAGATGGA+GGG | 0.640062 | 4.3:+18220269 | MS.gene023215:CDS |
| TGCAAGTGCTATAGCCAACA+GGG | 0.647996 | 4.3:+18221243 | MS.gene023215:CDS |
| TCTGTTGGCAAAGGAAGAGG+AGG | 0.650064 | 4.3:+18220335 | MS.gene023215:CDS |
| TCACTGATGCAGGTAAATGA+AGG | 0.652033 | 4.3:+18221208 | MS.gene023215:intron |
| ATGGAAGTATAAGAACCTCA+TGG | 0.653640 | 4.3:+18220903 | MS.gene023215:CDS |
| AATCCATATCCTGAACACTA+GGG | 0.654503 | 4.3:-18219833 | None:intergenic |
| ACAATATCAACAATTTATCG+AGG | 0.665388 | 4.3:+18219893 | MS.gene023215:CDS |
| TTGTTTCAATCTCTACCTCG+AGG | 0.671336 | 4.3:+18220206 | MS.gene023215:CDS |
| GGATCATCAGACAACACAAG+CGG | 0.678009 | 4.3:+18220116 | MS.gene023215:CDS |
| AGGGAATACCTACAACAACA+TGG | 0.679432 | 4.3:+18219767 | MS.gene023215:CDS |
| TTGCTTTGATCCCAACACAA+TGG | 0.687353 | 4.3:+18219542 | MS.gene023215:CDS |
| TCTCATCCCAAGTCCCACCA+AGG | 0.687512 | 4.3:+18220433 | MS.gene023215:CDS |
| TGAGGGTCTAGAATGGTCGA+GGG | 0.709529 | 4.3:-18219942 | None:intergenic |
| GAGGAAATCCAAAGACAGTG+AGG | 0.714492 | 4.3:+18220931 | MS.gene023215:CDS |
| GTTGGCATGCTATAGCCTCG+AGG | 0.732010 | 4.3:-18220221 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAAATTACATTTTTAG+TGG | + | chr4.3:18220628-18220647 | MS.gene023215:intron | 10.0% |
| !! | TAGAATTATTACATTTGATT+TGG | + | chr4.3:18221161-18221180 | MS.gene023215:intron | 15.0% |
| !! | TGGTTATATATTAAACTATA+AGG | + | chr4.3:18221181-18221200 | MS.gene023215:intron | 15.0% |
| !! | AGTCATTGAATTATGAAAAT+TGG | - | chr4.3:18220075-18220094 | None:intergenic | 20.0% |
| !! | GATTCAAAACATATATCAAT+TGG | - | chr4.3:18220542-18220561 | None:intergenic | 20.0% |
| !! | GTCATTGAATTATGAAAATT+GGG | - | chr4.3:18220074-18220093 | None:intergenic | 20.0% |
| !! | TTCATGGATAAAATTATACA+TGG | - | chr4.3:18220493-18220512 | None:intergenic | 20.0% |
| !! | TTGAATCTTGAATTATATTG+AGG | + | chr4.3:18220555-18220574 | MS.gene023215:intron | 20.0% |
| ! | ACAATATCAACAATTTATCG+AGG | + | chr4.3:18219893-18219912 | MS.gene023215:CDS | 25.0% |
| ! | AGTGAATGAACTGAAATTAT+TGG | + | chr4.3:18220784-18220803 | MS.gene023215:CDS | 25.0% |
| ! | ATTGAACAACAACAAAATCT+TGG | + | chr4.3:18219735-18219754 | MS.gene023215:CDS | 25.0% |
| ! | ATTGAATTATGAAAATTGGG+TGG | - | chr4.3:18220071-18220090 | None:intergenic | 25.0% |
| ! | CTATTTGATACCATGATTAA+CGG | + | chr4.3:18220682-18220701 | MS.gene023215:intron | 25.0% |
| ! | TATTTGATACCATGATTAAC+GGG | + | chr4.3:18220683-18220702 | MS.gene023215:intron | 25.0% |
| !! | AAAATCTTGGTTTGAACATA+GGG | + | chr4.3:18219748-18219767 | MS.gene023215:CDS | 25.0% |
| !! | CATAATTCAATGACTTTTCT+TGG | + | chr4.3:18220080-18220099 | MS.gene023215:CDS | 25.0% |
| !! | TTGTTTGTGTTGTTATCATT+GGG | - | chr4.3:18219588-18219607 | None:intergenic | 25.0% |
| !!! | ATGTTTATTGTTGTTTACCT+TGG | - | chr4.3:18220453-18220472 | None:intergenic | 25.0% |
| !!! | GAATTTTGATGATTATGGTA+AGG | - | chr4.3:18219657-18219676 | None:intergenic | 25.0% |
| !!! | GTTGTGAATTTTGATGATTA+TGG | - | chr4.3:18219662-18219681 | None:intergenic | 25.0% |
| AATTATTGGTGGAGAAGAAA+AGG | + | chr4.3:18220798-18220817 | MS.gene023215:CDS | 30.0% | |
| AGTGAATCCATTTGTATAAG+TGG | - | chr4.3:18219700-18219719 | None:intergenic | 30.0% | |
| CAAAACATGCATGAACAAAA+TGG | + | chr4.3:18219519-18219538 | MS.gene023215:CDS | 30.0% | |
| GAATGAACTGAAATTATTGG+TGG | + | chr4.3:18220787-18220806 | MS.gene023215:CDS | 30.0% | |
| GATGTTTCCACTTATACAAA+TGG | + | chr4.3:18219690-18219709 | MS.gene023215:CDS | 30.0% | |
| TAACATCATCATCGATAATC+CGG | - | chr4.3:18220964-18220983 | None:intergenic | 30.0% | |
| TAGTTTCTTGTTCAATAGCA+AGG | + | chr4.3:18221099-18221118 | MS.gene023215:CDS | 30.0% | |
| TATAAGTGGAAACATCATCA+AGG | - | chr4.3:18219686-18219705 | None:intergenic | 30.0% | |
| TCAAATAGAGATTCAAATCG+TGG | - | chr4.3:18220670-18220689 | None:intergenic | 30.0% | |
| TTACAATCAAACTGTTTCAG+AGG | + | chr4.3:18220981-18221000 | MS.gene023215:CDS | 30.0% | |
| TTTCTCAGTTGCAAAATGTT+TGG | - | chr4.3:18220369-18220388 | None:intergenic | 30.0% | |
| ! | ATGGAAAGTACAAAATCTTG+AGG | + | chr4.3:18220408-18220427 | MS.gene023215:CDS | 30.0% |
| ! | CAAAATCTTGGTTTGAACAT+AGG | + | chr4.3:18219747-18219766 | MS.gene023215:CDS | 30.0% |
| ! | GATATTGTTGTTCAGATAGT+TGG | - | chr4.3:18219881-18219900 | None:intergenic | 30.0% |
| ! | GTTGTTTGTGTTGTTATCAT+TGG | - | chr4.3:18219589-18219608 | None:intergenic | 30.0% |
| ! | TGGAAAGTACAAAATCTTGA+GGG | + | chr4.3:18220409-18220428 | MS.gene023215:CDS | 30.0% |
| !! | TTATTGTTGTTTACCTTGGT+GGG | - | chr4.3:18220449-18220468 | None:intergenic | 30.0% |
| !! | TTTATTGTTGTTTACCTTGG+TGG | - | chr4.3:18220450-18220469 | None:intergenic | 30.0% |
| AATCCATATCCTGAACACTA+GGG | - | chr4.3:18219836-18219855 | None:intergenic | 35.0% | |
| ATCAATTGGCAACAGAAAAG+TGG | - | chr4.3:18220528-18220547 | None:intergenic | 35.0% | |
| ATGGTTATCCATGTTGTTGT+AGG | - | chr4.3:18219778-18219797 | None:intergenic | 35.0% | |
| CAAAGAAGAGAGCAATTGAA+TGG | + | chr4.3:18220389-18220408 | MS.gene023215:CDS | 35.0% | |
| CAACAACATGGATAACCATT+TGG | + | chr4.3:18219779-18219798 | MS.gene023215:CDS | 35.0% | |
| GATACACTTCTTGTACCAAA+TGG | - | chr4.3:18219797-18219816 | None:intergenic | 35.0% | |
| TAATCCATATCCTGAACACT+AGG | - | chr4.3:18219837-18219856 | None:intergenic | 35.0% | |
| TAGAGATTCAAATCGTGGAA+CGG | - | chr4.3:18220665-18220684 | None:intergenic | 35.0% | |
| TGTTCAATGTCTACTGATGA+GGG | - | chr4.3:18219723-18219742 | None:intergenic | 35.0% | |
| TTCTTGTTCAATAGCAAGGT+TGG | + | chr4.3:18221103-18221122 | MS.gene023215:intron | 35.0% | |
| TTGTTCAATGTCTACTGATG+AGG | - | chr4.3:18219724-18219743 | None:intergenic | 35.0% | |
| ! | AGAAATGGTTCTCTTTTTGG+TGG | + | chr4.3:18220251-18220270 | MS.gene023215:CDS | 35.0% |
| ! | AGCTGTAACATAAAGCCTTT+TGG | + | chr4.3:18220872-18220891 | MS.gene023215:CDS | 35.0% |
| ! | ATGGAAGTATAAGAACCTCA+TGG | + | chr4.3:18220903-18220922 | MS.gene023215:CDS | 35.0% |
| ! | ATTGTTGTTCAGATAGTTGG+TGG | - | chr4.3:18219878-18219897 | None:intergenic | 35.0% |
| ! | TAGGTAAGTTGAGAAGGTTA+AGG | - | chr4.3:18219986-18220005 | None:intergenic | 35.0% |
| ! | TCGAGAAATGGTTCTCTTTT+TGG | + | chr4.3:18220248-18220267 | MS.gene023215:CDS | 35.0% |
| !! | AAATTGGGTGGATTTTGAGT+TGG | - | chr4.3:18220059-18220078 | None:intergenic | 35.0% |
| !!! | AATTGGGTGGATTTTGAGTT+GGG | - | chr4.3:18220058-18220077 | None:intergenic | 35.0% |
| AACACCTTCATCCATTGTGT+TGG | - | chr4.3:18219556-18219575 | None:intergenic | 40.0% | |
| AAGAGAACCATTTCTCGAGT+TGG | - | chr4.3:18220246-18220265 | None:intergenic | 40.0% | |
| AAGGCTTGAAATTCTCGTCA+AGG | - | chr4.3:18219620-18219639 | None:intergenic | 40.0% | |
| AAGTGTATCAGAACTCGAGT+TGG | + | chr4.3:18219808-18219827 | MS.gene023215:CDS | 40.0% | |
| ACACCTTCATCCATTGTGTT+GGG | - | chr4.3:18219555-18219574 | None:intergenic | 40.0% | |
| AGGGAATACCTACAACAACA+TGG | + | chr4.3:18219767-18219786 | MS.gene023215:CDS | 40.0% | |
| AGTGTATCAGAACTCGAGTT+GGG | + | chr4.3:18219809-18219828 | MS.gene023215:CDS | 40.0% | |
| AGTTGGGTTTGTCATGCAAA+TGG | - | chr4.3:18220042-18220061 | None:intergenic | 40.0% | |
| CAAACTGTTTCAGAGGAAGA+AGG | + | chr4.3:18220988-18221007 | MS.gene023215:CDS | 40.0% | |
| CAACAGGGTGATTGATGTTA+TGG | + | chr4.3:18221258-18221277 | MS.gene023215:CDS | 40.0% | |
| CAGGTCTTCCACATATAAGT+AGG | + | chr4.3:18221296-18221315 | MS.gene023215:CDS | 40.0% | |
| CATAACATCAATCACCCTGT+TGG | - | chr4.3:18221260-18221279 | None:intergenic | 40.0% | |
| CTGAAGTTCATCCAAAACCT+TGG | - | chr4.3:18221035-18221054 | None:intergenic | 40.0% | |
| GAATTTCAAGCCTTCTGTAG+AGG | + | chr4.3:18219626-18219645 | MS.gene023215:CDS | 40.0% | |
| GAGGTTCTTATACTTCCATC+TGG | - | chr4.3:18220902-18220921 | None:intergenic | 40.0% | |
| GGAAGGTTCAAAGGATATAG+AGG | - | chr4.3:18220161-18220180 | None:intergenic | 40.0% | |
| GTGTTGTCTGATGATCCTAT+TGG | - | chr4.3:18220113-18220132 | None:intergenic | 40.0% | |
| TAAGGTAGTTCCTCTACAGA+AGG | - | chr4.3:18219639-18219658 | None:intergenic | 40.0% | |
| TCACTGATGCAGGTAAATGA+AGG | + | chr4.3:18221208-18221227 | MS.gene023215:intron | 40.0% | |
| TGTCTGATGATCCTATTGGA+AGG | - | chr4.3:18220109-18220128 | None:intergenic | 40.0% | |
| TTGAGAAGGTTAAGGACATC+CGG | - | chr4.3:18219978-18219997 | None:intergenic | 40.0% | |
| TTGCTTTGATCCCAACACAA+TGG | + | chr4.3:18219542-18219561 | MS.gene023215:CDS | 40.0% | |
| TTGGAACTTCATCATGTTGC+AGG | + | chr4.3:18221055-18221074 | MS.gene023215:CDS | 40.0% | |
| TTGTTTCAATCTCTACCTCG+AGG | + | chr4.3:18220206-18220225 | MS.gene023215:CDS | 40.0% | |
| TTTCTTGGAGACCTTCCAAT+AGG | + | chr4.3:18220095-18220114 | MS.gene023215:CDS | 40.0% | |
| ! | AGCATCTAGGTAAGTTGAGA+AGG | - | chr4.3:18219992-18220011 | None:intergenic | 40.0% |
| ! | TTTGTCATGCAAATGGTGGA+TGG | - | chr4.3:18220035-18220054 | None:intergenic | 40.0% |
| !! | AATGGTTCTCTTTTTGGTGG+AGG | + | chr4.3:18220254-18220273 | MS.gene023215:CDS | 40.0% |
| !! | AGCAAAGATGAAGAGCATCT+AGG | - | chr4.3:18220005-18220024 | None:intergenic | 40.0% |
| !! | AGGGATTGTAGCTTTGGTTA+TGG | - | chr4.3:18219926-18219945 | None:intergenic | 40.0% |
| !!! | GGTTTTGGATGAACTTCAGT+TGG | + | chr4.3:18221036-18221055 | MS.gene023215:CDS | 40.0% |
| AATAGGGTCACTGCTTCTGT+TGG | + | chr4.3:18220320-18220339 | MS.gene023215:CDS | 45.0% | |
| AGACAACACAAGCGGATCAT+CGG | + | chr4.3:18220124-18220143 | MS.gene023215:CDS | 45.0% | |
| AGGGTAATGAGGGTCTAGAA+TGG | - | chr4.3:18219952-18219971 | None:intergenic | 45.0% | |
| ATGCAAGTGCTATAGCCAAC+AGG | + | chr4.3:18221242-18221261 | MS.gene023215:CDS | 45.0% | |
| ATGCCAACCAACTCGAGAAA+TGG | + | chr4.3:18220236-18220255 | MS.gene023215:CDS | 45.0% | |
| ATGGACACACAATATGCAGC+AGG | + | chr4.3:18221277-18221296 | MS.gene023215:CDS | 45.0% | |
| ATTGGCAACAGAAAAGTGGC+TGG | - | chr4.3:18220524-18220543 | None:intergenic | 45.0% | |
| CCAAAACTGCCCGTTAATCA+TGG | - | chr4.3:18220695-18220714 | None:intergenic | 45.0% | |
| CTTCCATCTGGATCACCAAA+AGG | - | chr4.3:18220890-18220909 | None:intergenic | 45.0% | |
| GAACTTCATCATGTTGCAGG+TGG | + | chr4.3:18221058-18221077 | MS.gene023215:CDS | 45.0% | |
| GACATCAACCTCACTGTCTT+TGG | - | chr4.3:18220942-18220961 | None:intergenic | 45.0% | |
| GAGGAAATCCAAAGACAGTG+AGG | + | chr4.3:18220931-18220950 | MS.gene023215:CDS | 45.0% | |
| GATCCCAACACAATGGATGA+AGG | + | chr4.3:18219549-18219568 | MS.gene023215:CDS | 45.0% | |
| GGATCATCAGACAACACAAG+CGG | + | chr4.3:18220116-18220135 | MS.gene023215:CDS | 45.0% | |
| TGAAACAATTCCCTGAGAGC+TGG | - | chr4.3:18220194-18220213 | None:intergenic | 45.0% | |
| TGCAAGTGCTATAGCCAACA+GGG | + | chr4.3:18221243-18221262 | MS.gene023215:CDS | 45.0% | |
| TGGGTTTGTCATGCAAATGG+TGG | - | chr4.3:18220039-18220058 | None:intergenic | 45.0% | |
| TGTTTACCTTGGTGGGACTT+GGG | - | chr4.3:18220442-18220461 | None:intergenic | 45.0% | |
| TTGGTGGAGAAGAAAAGGCA+TGG | + | chr4.3:18220803-18220822 | MS.gene023215:CDS | 45.0% | |
| TTGTTTACCTTGGTGGGACT+TGG | - | chr4.3:18220443-18220462 | None:intergenic | 45.0% | |
| ! | ACTGATAGAGCATCAGTGGT+TGG | + | chr4.3:18220725-18220744 | MS.gene023215:CDS | 45.0% |
| ! | ATAAGGTGTGTCACTGATGC+AGG | + | chr4.3:18221198-18221217 | MS.gene023215:intron | 45.0% |
| ! | GCTGTTTGTGTCCAAGGTTT+TGG | + | chr4.3:18221021-18221040 | MS.gene023215:CDS | 45.0% |
| ! | GGAGAAGAAAAGGCATGGAA+GGG | + | chr4.3:18220808-18220827 | MS.gene023215:CDS | 45.0% |
| ! | TGGAGAAGAAAAGGCATGGA+AGG | + | chr4.3:18220807-18220826 | MS.gene023215:CDS | 45.0% |
| ! | TTTTGGTGGAGGTGATGAGA+TGG | + | chr4.3:18220265-18220284 | MS.gene023215:CDS | 45.0% |
| !! | AAGACAGTGAGGTTGATGTC+CGG | + | chr4.3:18220942-18220961 | MS.gene023215:CDS | 45.0% |
| !! | AAGCCTTTTGGTGATCCAGA+TGG | + | chr4.3:18220884-18220903 | MS.gene023215:CDS | 45.0% |
| !! | CAGATAGTTGGTGGTGTTCT+TGG | - | chr4.3:18219869-18219888 | None:intergenic | 45.0% |
| !! | CCATGATTAACGGGCAGTTT+TGG | + | chr4.3:18220692-18220711 | MS.gene023215:intron | 45.0% |
| !! | GAACCATTTCTCGAGTTGGT+TGG | - | chr4.3:18220242-18220261 | None:intergenic | 45.0% |
| !! | GGGAGTGCTGGAATTCAATA+GGG | + | chr4.3:18220304-18220323 | MS.gene023215:CDS | 45.0% |
| !! | TGGGAGTGCTGGAATTCAAT+AGG | + | chr4.3:18220303-18220322 | MS.gene023215:CDS | 45.0% |
| !! | TTGCTTGCTGTTTGTGTCCA+AGG | + | chr4.3:18221015-18221034 | MS.gene023215:CDS | 45.0% |
| AACAATTCCCTGAGAGCTGG+AGG | - | chr4.3:18220191-18220210 | None:intergenic | 50.0% | |
| ACATCCGGTGAAGGGTAATG+AGG | - | chr4.3:18219963-18219982 | None:intergenic | 50.0% | |
| AGACCCTCATTACCCTTCAC+CGG | + | chr4.3:18219956-18219975 | MS.gene023215:CDS | 50.0% | |
| AGGTTAAGGACATCCGGTGA+AGG | - | chr4.3:18219972-18219991 | None:intergenic | 50.0% | |
| ATGGAGGGAGATGGGGATAT+GGG | + | chr4.3:18220284-18220303 | MS.gene023215:CDS | 50.0% | |
| CATCCGGTGAAGGGTAATGA+GGG | - | chr4.3:18219962-18219981 | None:intergenic | 50.0% | |
| CATGTTGCAGGTGGACATGT+TGG | + | chr4.3:18221067-18221086 | MS.gene023215:CDS | 50.0% | |
| GCTTCTGTTGGCAAAGGAAG+AGG | + | chr4.3:18220332-18220351 | MS.gene023215:CDS | 50.0% | |
| GGACCCTAGTGTTCAGGATA+TGG | + | chr4.3:18219830-18219849 | MS.gene023215:CDS | 50.0% | |
| GGTTAAGGACATCCGGTGAA+GGG | - | chr4.3:18219971-18219990 | None:intergenic | 50.0% | |
| GTCACTGCTTCTGTTGGCAA+AGG | + | chr4.3:18220326-18220345 | MS.gene023215:CDS | 50.0% | |
| GTGATGAGATGGAGGGAGAT+GGG | + | chr4.3:18220276-18220295 | MS.gene023215:CDS | 50.0% | |
| GTGGCTGGTGACTCAATTCA+TGG | - | chr4.3:18220509-18220528 | None:intergenic | 50.0% | |
| TAAGAACCTCATGGCTGCAG+AGG | + | chr4.3:18220912-18220931 | MS.gene023215:CDS | 50.0% | |
| TCTGTTGGCAAAGGAAGAGG+AGG | + | chr4.3:18220335-18220354 | MS.gene023215:CDS | 50.0% | |
| TGATGAGATGGAGGGAGATG+GGG | + | chr4.3:18220277-18220296 | MS.gene023215:CDS | 50.0% | |
| TGGTCGAGGGATTGTAGCTT+TGG | - | chr4.3:18219932-18219951 | None:intergenic | 50.0% | |
| ! | ATGAGGGTCTAGAATGGTCG+AGG | - | chr4.3:18219946-18219965 | None:intergenic | 50.0% |
| ! | GCAGACTGATAGAGCATCAG+TGG | + | chr4.3:18220721-18220740 | MS.gene023215:intron | 50.0% |
| ! | TGAGGGTCTAGAATGGTCGA+GGG | - | chr4.3:18219945-18219964 | None:intergenic | 50.0% |
| GAGTTGGGACCCTAGTGTTC+AGG | + | chr4.3:18219824-18219843 | MS.gene023215:CDS | 55.0% | |
| GATGGAGGGAGATGGGGATA+TGG | + | chr4.3:18220283-18220302 | MS.gene023215:CDS | 55.0% | |
| GGATTTCCTCTGCAGCCATG+AGG | - | chr4.3:18220921-18220940 | None:intergenic | 55.0% | |
| GGCTGTGGAGGAAGGTTCAA+AGG | - | chr4.3:18220170-18220189 | None:intergenic | 55.0% | |
| GGTGATGAGATGGAGGGAGA+TGG | + | chr4.3:18220275-18220294 | MS.gene023215:CDS | 55.0% | |
| GGTGGAGGTGATGAGATGGA+GGG | + | chr4.3:18220269-18220288 | MS.gene023215:CDS | 55.0% | |
| GTTGGCATGCTATAGCCTCG+AGG | - | chr4.3:18220224-18220243 | None:intergenic | 55.0% | |
| TCTCATCCCAAGTCCCACCA+AGG | + | chr4.3:18220433-18220452 | MS.gene023215:CDS | 55.0% | |
| TGGTGGAGGTGATGAGATGG+AGG | + | chr4.3:18220268-18220287 | MS.gene023215:CDS | 55.0% | |
| ! | AGATGGGGATATGGGAGTGC+TGG | + | chr4.3:18220292-18220311 | MS.gene023215:CDS | 55.0% |
| TCCACAGCCTCCAGCTCTCA+GGG | + | chr4.3:18220181-18220200 | MS.gene023215:CDS | 60.0% | |
| CTCCACAGCCTCCAGCTCTC+AGG | + | chr4.3:18220180-18220199 | MS.gene023215:CDS | 65.0% | |
| CTGAGAGCTGGAGGCTGTGG+AGG | - | chr4.3:18220182-18220201 | None:intergenic | 65.0% | |
| GAGCTGGAGGCTGTGGAGGA+AGG | - | chr4.3:18220178-18220197 | None:intergenic | 65.0% | |
| TCCCTGAGAGCTGGAGGCTG+TGG | - | chr4.3:18220185-18220204 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 18219495 | 18221324 | 18219495 | ID=MS.gene023215 |
| chr4.3 | mRNA | 18219495 | 18221324 | 18219495 | ID=MS.gene023215.t1;Parent=MS.gene023215 |
| chr4.3 | exon | 18219495 | 18220454 | 18219495 | ID=MS.gene023215.t1.exon1;Parent=MS.gene023215.t1 |
| chr4.3 | CDS | 18219495 | 18220454 | 18219495 | ID=cds.MS.gene023215.t1;Parent=MS.gene023215.t1 |
| chr4.3 | exon | 18220725 | 18221120 | 18220725 | ID=MS.gene023215.t1.exon2;Parent=MS.gene023215.t1 |
| chr4.3 | CDS | 18220725 | 18221120 | 18220725 | ID=cds.MS.gene023215.t1;Parent=MS.gene023215.t1 |
| chr4.3 | exon | 18221220 | 18221324 | 18221220 | ID=MS.gene023215.t1.exon3;Parent=MS.gene023215.t1 |
| chr4.3 | CDS | 18221220 | 18221324 | 18221220 | ID=cds.MS.gene023215.t1;Parent=MS.gene023215.t1 |
| Gene Sequence |
| Protein sequence |
