Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023235.t1 | RHN42288.1 | 94.7 | 679 | 36 | 0 | 1 | 679 | 93 | 771 | 0.00E+00 | 1117.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023235.t1 | Q9ZUM0 | 39.8 | 588 | 260 | 26 | 4 | 559 | 9 | 534 | 1.6e-78 | 295.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023235.t1 | A0A396GPF7 | 94.7 | 679 | 36 | 0 | 1 | 679 | 93 | 771 | 0.0e+00 | 1117.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene023235.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023235.t1 | MTR_4g114040 | 57.851 | 121 | 34 | 1 | 25 | 145 | 7 | 110 | 1.22e-42 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023235.t1 | AT2G02160 | 39.872 | 627 | 284 | 28 | 3 | 596 | 5 | 571 | 5.78e-105 | 334 |
Find 190 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAGTCCTTCTTTCTATT+TGG | 0.122370 | 4.3:+17920091 | None:intergenic |
| ATTTGGGCTGATCCCTTTCT+AGG | 0.173898 | 4.3:+17920108 | None:intergenic |
| AGAATTTCACTAAGTGGTTT+TGG | 0.245906 | 4.3:+17919517 | None:intergenic |
| TATCATGGGGAAGATGAATT+TGG | 0.267482 | 4.3:-17920294 | MS.gene023235:CDS |
| GCTTGTTTACTACCATTATA+AGG | 0.280011 | 4.3:+17920828 | None:intergenic |
| TTTCTCAGAGAGTCGTCTCC+TGG | 0.281678 | 4.3:-17920360 | MS.gene023235:CDS |
| AGTCTTGCTGAACTTAAGTA+TGG | 0.284200 | 4.3:-17919634 | MS.gene023235:CDS |
| ATGAGTCCTTCTTTCTATTT+GGG | 0.297001 | 4.3:+17920092 | None:intergenic |
| TTCTCCCTTGACATGCAAAA+AGG | 0.299512 | 4.3:-17922195 | MS.gene023235:intron |
| TCCTCTTTCCAAATGATTGT+TGG | 0.310747 | 4.3:+17919590 | None:intergenic |
| TTGGAAAGAGGAAAAGCTTC+AGG | 0.319306 | 4.3:-17919579 | MS.gene023235:CDS |
| CAGCCTCTTGACGGGTTGTT+AGG | 0.337201 | 4.3:-17920933 | MS.gene023235:CDS |
| CAACACCTGCAACATTTGCT+TGG | 0.342566 | 4.3:+17920607 | None:intergenic |
| CCAAAAGGTTTCTTAAAACT+TGG | 0.344005 | 4.3:+17920666 | None:intergenic |
| AAGAACAACACCAATCTTCT+TGG | 0.345542 | 4.3:+17919156 | None:intergenic |
| ACCCATGCACCGCCTTATAA+TGG | 0.352929 | 4.3:-17920840 | MS.gene023235:CDS |
| GGAAGAAGAGTCCAAGATTC+AGG | 0.353435 | 4.3:-17919386 | MS.gene023235:CDS |
| CCGGCAACTGCTGCTGCTGC+TGG | 0.354940 | 4.3:-17920903 | MS.gene023235:CDS |
| GCCGTTTCCCTTCCTGCGCT+TGG | 0.358186 | 4.3:+17920014 | None:intergenic |
| ATCAGTGGCCGGTTGTCATC+TGG | 0.358804 | 4.3:-17919781 | MS.gene023235:CDS |
| TCGTATTCATTCAAAGAGTC+TGG | 0.359110 | 4.3:+17920243 | None:intergenic |
| ATCTCTCATTTGAAGGTAAC+TGG | 0.359901 | 4.3:+17919929 | None:intergenic |
| AGAAATTCTGATTACTATCA+TGG | 0.361394 | 4.3:-17920309 | MS.gene023235:CDS |
| TTACTGCCATTGGTAGGGTT+TGG | 0.386685 | 4.3:+17920738 | None:intergenic |
| AATAATGACCAACAATCATT+TGG | 0.389220 | 4.3:-17919598 | MS.gene023235:CDS |
| CGTCATTGTCCTTACCACTA+TGG | 0.395917 | 4.3:+17920385 | None:intergenic |
| ATCCTAGAGATTGTTGGTAT+TGG | 0.401206 | 4.3:-17921131 | MS.gene023235:CDS |
| TTTCTAGGTTCCCAGCCATA+TGG | 0.401770 | 4.3:+17920123 | None:intergenic |
| TTGACAGATCTCTCATTTGA+AGG | 0.402339 | 4.3:+17919922 | None:intergenic |
| ATCATATGAGTCATAACCTT+GGG | 0.402504 | 4.3:+17920158 | None:intergenic |
| TCCATCAGCAGCCTGAATCT+TGG | 0.402576 | 4.3:+17919375 | None:intergenic |
| CTATGGAAATTGTGATCATC+TGG | 0.404436 | 4.3:+17920402 | None:intergenic |
| AAGTTTCTCCTCTCGTCATC+TGG | 0.405913 | 4.3:+17919703 | None:intergenic |
| CGATGAAGCTGCCGAAGATC+AGG | 0.408429 | 4.3:-17919299 | MS.gene023235:CDS |
| AAATCAAGAGCAAGAATATA+TGG | 0.412298 | 4.3:-17919203 | MS.gene023235:CDS |
| GTACATCATCTTCATATTGT+TGG | 0.423888 | 4.3:+17919551 | None:intergenic |
| AGGATCCAGGATAGATTAAG+AGG | 0.436261 | 4.3:-17919733 | MS.gene023235:CDS |
| ACTTCCCAAGCAAATGTTGC+AGG | 0.436467 | 4.3:-17920612 | MS.gene023235:CDS |
| ACCTTCATACTCCTGATCTT+CGG | 0.437886 | 4.3:+17919288 | None:intergenic |
| GAAGATGATGTACCATTTGA+AGG | 0.438650 | 4.3:-17919541 | MS.gene023235:CDS |
| GAATCTGAAGTTGTGGCTGT+TGG | 0.444668 | 4.3:+17922291 | None:intergenic |
| ACCTTCCTCTTAATCTATCC+TGG | 0.445108 | 4.3:+17919728 | None:intergenic |
| AACACCTGCAACATTTGCTT+GGG | 0.445165 | 4.3:+17920608 | None:intergenic |
| TCCTTCAGAATTTCACTAAG+TGG | 0.448374 | 4.3:+17919511 | None:intergenic |
| AGGTGACTGTCACCACCATT+TGG | 0.450256 | 4.3:+17919868 | None:intergenic |
| GAAATTCTGATTACTATCAT+GGG | 0.451701 | 4.3:-17920308 | MS.gene023235:CDS |
| GTCCCTCTCTAGGTGACTGC+TGG | 0.452700 | 4.3:+17919819 | None:intergenic |
| ACACGATTAGACCGGGCATT+AGG | 0.453044 | 4.3:+17920441 | None:intergenic |
| GATTGTTGGTATTGGTTGAA+TGG | 0.456384 | 4.3:-17921123 | MS.gene023235:CDS |
| ATCTGTGGCGTGGGGACAGA+TGG | 0.457178 | 4.3:+17920879 | None:intergenic |
| ATATGGCTGGGAACCTAGAA+AGG | 0.461958 | 4.3:-17920121 | MS.gene023235:CDS |
| CGGATGACGGAATGAACACT+TGG | 0.466296 | 4.3:+17921086 | None:intergenic |
| CTCAAGATGAAGCCTTGAAA+AGG | 0.468804 | 4.3:-17922244 | MS.gene023235:CDS |
| AATATATGGAAGATGAAGAT+GGG | 0.468862 | 4.3:-17919189 | MS.gene023235:CDS |
| AACTTGGATTCTCAGCTCCT+TGG | 0.469416 | 4.3:+17920682 | None:intergenic |
| AATCTGAAGTTGTGGCTGTT+GGG | 0.469633 | 4.3:+17922292 | None:intergenic |
| TGACTCTAGCATACTCACTA+TGG | 0.470886 | 4.3:+17921154 | None:intergenic |
| TCTGAGACCTCAACACTGTC+AGG | 0.480290 | 4.3:+17920054 | None:intergenic |
| GCATTAGGCCCATTGGTTGG+CGG | 0.480720 | 4.3:+17920456 | None:intergenic |
| AGAATAAATCTTCCACCAAA+TGG | 0.481461 | 4.3:-17919883 | MS.gene023235:CDS |
| AATGAAGGAATTACCGAAAA+CGG | 0.483376 | 4.3:-17919427 | MS.gene023235:CDS |
| CATGTACCGCCACCACCTGC+AGG | 0.483658 | 4.3:-17920522 | MS.gene023235:CDS |
| GATGACTTTGCCAAGAAGAT+TGG | 0.484215 | 4.3:-17919166 | MS.gene023235:CDS |
| GCCTCATGAGGGAAGGATCC+AGG | 0.484648 | 4.3:-17919746 | MS.gene023235:CDS |
| TACCATTATAAGGCGGTGCA+TGG | 0.485504 | 4.3:+17920838 | None:intergenic |
| CAACCAATGGGCCTAATGCC+CGG | 0.485721 | 4.3:-17920452 | MS.gene023235:CDS |
| TTAGGCCCATTGGTTGGCGG+TGG | 0.486496 | 4.3:+17920459 | None:intergenic |
| TTCTCAGAGAGTCGTCTCCT+GGG | 0.488365 | 4.3:-17920359 | MS.gene023235:CDS |
| GAAATTCTGAAGGAGAAGAA+AGG | 0.491627 | 4.3:-17919502 | MS.gene023235:CDS |
| TCCAAGCGCAGGAAGGGAAA+CGG | 0.492405 | 4.3:-17920015 | MS.gene023235:CDS |
| GAATATATGGAAGATGAAGA+TGG | 0.492589 | 4.3:-17919190 | MS.gene023235:CDS |
| CAAGTGTTCATTCCGTCATC+CGG | 0.493411 | 4.3:-17921085 | MS.gene023235:intron |
| TTTACATGCAGCCTCTTGAC+GGG | 0.494749 | 4.3:-17920941 | MS.gene023235:intron |
| GTCATCATGTTTGCTACTGT+GGG | 0.496484 | 4.3:+17919456 | None:intergenic |
| TGGATTCTCAGCTCCTTGGT+TGG | 0.496891 | 4.3:+17920686 | None:intergenic |
| TGGTAGGGTTTGGTCCATGC+AGG | 0.497954 | 4.3:+17920748 | None:intergenic |
| TCCAAGATTCAGGCTGCTGA+TGG | 0.498699 | 4.3:-17919376 | MS.gene023235:CDS |
| GAAGCCTTCCAGATGACAAC+CGG | 0.499100 | 4.3:+17919773 | None:intergenic |
| AAGGCTTCATCTTGAGGAGA+AGG | 0.502963 | 4.3:+17922251 | None:intergenic |
| TTATCTAACCCTGCAGGTGG+TGG | 0.503622 | 4.3:+17920513 | None:intergenic |
| TCATCTTGAGGAGAAGGTGT+TGG | 0.504643 | 4.3:+17922257 | None:intergenic |
| TGGAAAGAGGAAAAGCTTCA+GGG | 0.504669 | 4.3:-17919578 | MS.gene023235:CDS |
| CTGAAGGAGAAGAAAGGAGT+TGG | 0.505461 | 4.3:-17919496 | MS.gene023235:CDS |
| GTATGAGTATGAACAAGTTG+AGG | 0.507239 | 4.3:-17919230 | MS.gene023235:CDS |
| AGTTCTCCACCGCCAACCAA+TGG | 0.509937 | 4.3:-17920465 | MS.gene023235:CDS |
| TCTTTGAATGAATACGATGT+AGG | 0.510886 | 4.3:-17920237 | MS.gene023235:CDS |
| AAAGGAGTTGGAGCTGGTGC+AGG | 0.510993 | 4.3:-17919484 | MS.gene023235:CDS |
| GTTCTCCACCGCCAACCAAT+GGG | 0.511996 | 4.3:-17920464 | MS.gene023235:CDS |
| CATGATGACAATAAGAATGA+AGG | 0.513449 | 4.3:-17919442 | MS.gene023235:CDS |
| AGACCGGGCATTAGGCCCAT+TGG | 0.518925 | 4.3:+17920449 | None:intergenic |
| ACCAACAATCATTTGGAAAG+AGG | 0.519008 | 4.3:-17919591 | MS.gene023235:CDS |
| TGTCATCATGTTTGCTACTG+TGG | 0.520700 | 4.3:+17919455 | None:intergenic |
| TCTAACCCTGCAGGTGGTGG+CGG | 0.521071 | 4.3:+17920516 | None:intergenic |
| CTTTGAATGAATACGATGTA+GGG | 0.521877 | 4.3:-17920236 | MS.gene023235:CDS |
| CGGAACATTGTCAGAGAGCA+AGG | 0.523049 | 4.3:-17919407 | MS.gene023235:CDS |
| GATCACATGCAAGAGCCATA+TGG | 0.523697 | 4.3:-17920138 | MS.gene023235:CDS |
| GAGTCAATCCTAGAGATTGT+TGG | 0.524919 | 4.3:-17921137 | MS.gene023235:CDS |
| TATGAGTATGAACAAGTTGA+GGG | 0.525313 | 4.3:-17919229 | MS.gene023235:CDS |
| GTTGCCGCAATCTGTGGCGT+GGG | 0.527866 | 4.3:+17920870 | None:intergenic |
| ACATGCAAGAGCCATATGGC+TGG | 0.534478 | 4.3:-17920134 | MS.gene023235:CDS |
| GCAGCAGCAGCAGTTGCCGG+TGG | 0.534503 | 4.3:+17920906 | None:intergenic |
| GCCTCATTATCTAACCCTGC+AGG | 0.535034 | 4.3:+17920507 | None:intergenic |
| GTGGAAGATTTATTCTGCCT+CGG | 0.535587 | 4.3:+17919890 | None:intergenic |
| ACCTGCAGGGTTAGATAATG+AGG | 0.535845 | 4.3:-17920508 | MS.gene023235:CDS |
| GAGAAGAAAGGAGTTGGAGC+TGG | 0.544404 | 4.3:-17919490 | MS.gene023235:CDS |
| CTCTGTCCAAGTCCCTCTCT+AGG | 0.544981 | 4.3:+17919809 | None:intergenic |
| CGTTTATCCAAGCGCAGGAA+GGG | 0.547030 | 4.3:-17920021 | MS.gene023235:CDS |
| ACCATTATAAGGCGGTGCAT+GGG | 0.548023 | 4.3:+17920839 | None:intergenic |
| GATGATCACAATTTCCATAG+TGG | 0.554285 | 4.3:-17920399 | MS.gene023235:CDS |
| TGGCAGTAAAATAGCTACAC+AGG | 0.556312 | 4.3:-17920724 | MS.gene023235:CDS |
| AGCAAGAAAGTAGACACAAT+CGG | 0.559051 | 4.3:+17922217 | None:intergenic |
| GATCGAATGAGGACCGAAGT+GGG | 0.559665 | 4.3:-17919672 | MS.gene023235:CDS |
| TCCAGGATAGATTAAGAGGA+AGG | 0.562641 | 4.3:-17919729 | MS.gene023235:CDS |
| CGGGCATTAGGCCCATTGGT+TGG | 0.564557 | 4.3:+17920453 | None:intergenic |
| CTCTGTCTAAGTCCCTCTCT+AGG | 0.564616 | 4.3:+17919848 | None:intergenic |
| TCCTGGATCCTTCCCTCATG+AGG | 0.568928 | 4.3:+17919745 | None:intergenic |
| GAACCAGCAGTCACCTAGAG+AGG | 0.569215 | 4.3:-17919822 | MS.gene023235:CDS |
| TGTCCCCACGCCACAGATTG+CGG | 0.569632 | 4.3:-17920874 | MS.gene023235:CDS |
| TGACTGTCACCACCATTTGG+TGG | 0.569677 | 4.3:+17919871 | None:intergenic |
| CGTATTCATTCAAAGAGTCT+GGG | 0.569875 | 4.3:+17920244 | None:intergenic |
| GACAGATGTGCCTTCCTGCA+TGG | 0.570126 | 4.3:-17920762 | MS.gene023235:CDS |
| TTGAAAGAAAATGCAAGGCA+CGG | 0.577753 | 4.3:+17920806 | None:intergenic |
| CTTCAGCAGTCGATCGAATG+AGG | 0.577765 | 4.3:-17919683 | MS.gene023235:CDS |
| TGTTGCCGCAATCTGTGGCG+TGG | 0.581148 | 4.3:+17920869 | None:intergenic |
| GCAGATGTTGCCGCAATCTG+TGG | 0.582954 | 4.3:+17920864 | None:intergenic |
| TCGTTTATCCAAGCGCAGGA+AGG | 0.583309 | 4.3:-17920022 | MS.gene023235:CDS |
| GATCAGCCCAAATAGAAAGA+AGG | 0.583430 | 4.3:-17920098 | MS.gene023235:CDS |
| GATGAATTTGGTAAAACAAG+AGG | 0.583764 | 4.3:-17920282 | MS.gene023235:CDS |
| TCACAATTTCCATAGTGGTA+AGG | 0.586818 | 4.3:-17920394 | MS.gene023235:CDS |
| TTGTGGCTGTTGGGCAACCA+TGG | 0.587839 | 4.3:+17922301 | None:intergenic |
| TCGTAGTCCTGACAGTGTTG+AGG | 0.587874 | 4.3:-17920061 | MS.gene023235:CDS |
| GTTGATGCACACGATTAGAC+CGG | 0.589529 | 4.3:+17920433 | None:intergenic |
| TTCAATCGCCTCATGAGGGA+AGG | 0.590666 | 4.3:-17919753 | MS.gene023235:CDS |
| GATCATATGAGTCATAACCT+TGG | 0.590754 | 4.3:+17920157 | None:intergenic |
| CAGTCACCTAGAGAGGGACT+TGG | 0.591478 | 4.3:-17919815 | MS.gene023235:CDS |
| AAGGCTTCAATCGCCTCATG+AGG | 0.592807 | 4.3:-17919758 | MS.gene023235:CDS |
| ATCTGTCGTCGCTCATGATG+AGG | 0.592954 | 4.3:-17919986 | MS.gene023235:CDS |
| ACCACTTAGTGAAATTCTGA+AGG | 0.593072 | 4.3:-17919512 | MS.gene023235:CDS |
| AACCAATACCAACAATCTCT+AGG | 0.593370 | 4.3:+17921129 | None:intergenic |
| CGATCGAATGAGGACCGAAG+TGG | 0.593485 | 4.3:-17919673 | MS.gene023235:CDS |
| GACATCGTTTATCCAAGCGC+AGG | 0.594290 | 4.3:-17920026 | MS.gene023235:CDS |
| GTCTTGCTGAACTTAAGTAT+GGG | 0.596178 | 4.3:-17919633 | MS.gene023235:CDS |
| GATCAGGAGTATGAAGGTGA+AGG | 0.597456 | 4.3:-17919283 | MS.gene023235:CDS |
| GCCGAAGATCAGGAGTATGA+AGG | 0.599647 | 4.3:-17919289 | MS.gene023235:CDS |
| CATGCAAGAGCCATATGGCT+GGG | 0.599944 | 4.3:-17920133 | MS.gene023235:CDS |
| CACGGTCAATCATCTGAGGA+AGG | 0.602447 | 4.3:-17919331 | MS.gene023235:CDS |
| TAAAGAAACTCACCGGATGA+CGG | 0.603837 | 4.3:+17921073 | None:intergenic |
| CTAGAGAGGGACTTGGACAG+AGG | 0.604960 | 4.3:-17919808 | MS.gene023235:CDS |
| CGGGTTGTTAGGAACACCAC+CGG | 0.605352 | 4.3:-17920922 | MS.gene023235:CDS |
| TGAATATGAGCAAGGTGATG+AGG | 0.606447 | 4.3:-17919254 | MS.gene023235:CDS |
| GTTCCTAACAACCCGTCAAG+AGG | 0.607813 | 4.3:+17920930 | None:intergenic |
| TATGGCTGGGAACCTAGAAA+GGG | 0.609578 | 4.3:-17920120 | MS.gene023235:CDS |
| ATCATGTTTGCTACTGTGGG+AGG | 0.610033 | 4.3:+17919459 | None:intergenic |
| GATAGATTTCGTGTGCCCCA+AGG | 0.610131 | 4.3:-17920174 | MS.gene023235:CDS |
| ACAAGAGGTCAAGATGAAAG+AGG | 0.612476 | 4.3:-17920267 | MS.gene023235:CDS |
| ATATATGGAAGATGAAGATG+GGG | 0.612975 | 4.3:-17919188 | MS.gene023235:CDS |
| TTGCTGAACTTAAGTATGGG+AGG | 0.621411 | 4.3:-17919630 | MS.gene023235:CDS |
| GACAATACTGATGCAACTCA+CGG | 0.622935 | 4.3:-17919349 | MS.gene023235:CDS |
| GTGGTGACAGTCACCTAGAG+AGG | 0.623462 | 4.3:-17919861 | MS.gene023235:CDS |
| ACAGAGGAAGAATCAGTGGC+CGG | 0.626828 | 4.3:-17919792 | MS.gene023235:CDS |
| TTGTGATCATCTGGCAAACG+AGG | 0.626895 | 4.3:+17920411 | None:intergenic |
| TTGGCGCAGAGAACCCACTT+CGG | 0.629325 | 4.3:+17919659 | None:intergenic |
| GGCAGTAAAATAGCTACACA+GGG | 0.630874 | 4.3:-17920723 | MS.gene023235:CDS |
| AGGGTTTGGTCCATGCAGGA+AGG | 0.631683 | 4.3:+17920752 | None:intergenic |
| AACCAGCAGTCACCTAGAGA+GGG | 0.636906 | 4.3:-17919821 | MS.gene023235:CDS |
| GAAGGTTGCCAGATGACGAG+AGG | 0.639411 | 4.3:-17919711 | MS.gene023235:CDS |
| CTAGAGAGGGACTTAGACAG+AGG | 0.639929 | 4.3:-17919847 | MS.gene023235:CDS |
| GGATGACGGAATGAACACTT+GGG | 0.640470 | 4.3:+17921087 | None:intergenic |
| AGGCTTCAATCGCCTCATGA+GGG | 0.642774 | 4.3:-17919757 | MS.gene023235:CDS |
| ATGTACCGCCACCACCTGCA+GGG | 0.643731 | 4.3:-17920521 | MS.gene023235:CDS |
| AAATTCTGATTACTATCATG+GGG | 0.645440 | 4.3:-17920307 | MS.gene023235:CDS |
| TTGCCGCAATCTGTGGCGTG+GGG | 0.646254 | 4.3:+17920871 | None:intergenic |
| GTGGCCGGTTGTCATCTGGA+AGG | 0.646666 | 4.3:-17919777 | MS.gene023235:CDS |
| CATGGACCAAACCCTACCAA+TGG | 0.648418 | 4.3:-17920744 | MS.gene023235:CDS |
| ATAAATCTTCCACCAAATGG+TGG | 0.648459 | 4.3:-17919880 | MS.gene023235:CDS |
| TTGGACAGAGGAAGAATCAG+TGG | 0.649407 | 4.3:-17919796 | MS.gene023235:CDS |
| GGAGACTATGAATATGAGCA+AGG | 0.650461 | 4.3:-17919262 | MS.gene023235:CDS |
| TTGATGCACACGATTAGACC+GGG | 0.654044 | 4.3:+17920434 | None:intergenic |
| TCTGTCAATAATCGTTTCCG+AGG | 0.654101 | 4.3:-17919907 | MS.gene023235:CDS |
| TGCGCTTGGATAAACGATGT+CGG | 0.656360 | 4.3:+17920028 | None:intergenic |
| AACTCACGGTCAATCATCTG+AGG | 0.660605 | 4.3:-17919335 | MS.gene023235:CDS |
| TCAATGACAATGACCAACCA+AGG | 0.673022 | 4.3:-17920699 | MS.gene023235:CDS |
| TGAGTCTGAATCTGAAGTTG+TGG | 0.677604 | 4.3:+17922284 | None:intergenic |
| TGGTGACAGTCACCTAGAGA+GGG | 0.684816 | 4.3:-17919860 | MS.gene023235:CDS |
| TCATTATCTAACCCTGCAGG+TGG | 0.685323 | 4.3:+17920510 | None:intergenic |
| TGTTTACTACCATTATAAGG+CGG | 0.686484 | 4.3:+17920831 | None:intergenic |
| TCATATGAGTCATAACCTTG+GGG | 0.704228 | 4.3:+17920159 | None:intergenic |
| CTCTAGCATACTCACTATGG+CGG | 0.707134 | 4.3:+17921157 | None:intergenic |
| GCTACAAGAACATCAAACCC+AGG | 0.714968 | 4.3:+17920342 | None:intergenic |
| GCAGTAAAATAGCTACACAG+GGG | 0.802739 | 4.3:-17920722 | MS.gene023235:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTAATAATAATA+GGG | + | chr4.3:17919908-17919927 | None:intergenic | 0.0% |
| !! | ATAATTGATAAAGAAAAAAA+AGG | + | chr4.3:17919312-17919331 | None:intergenic | 10.0% |
| !! | TAATTGATAAAGAAAAAAAA+GGG | + | chr4.3:17919311-17919330 | None:intergenic | 10.0% |
| !!! | AAATTTAATTTTGATTAATG+GGG | - | chr4.3:17919402-17919421 | MS.gene023235:CDS | 10.0% |
| !!! | TTTATCAATTATATCTTTTA+GGG | - | chr4.3:17919320-17919339 | MS.gene023235:CDS | 10.0% |
| !! | CATAACTCAATTAAAATAAA+AGG | + | chr4.3:17920420-17920439 | None:intergenic | 15.0% |
| !!! | CTTTATCAATTATATCTTTT+AGG | - | chr4.3:17919319-17919338 | MS.gene023235:CDS | 15.0% |
| !! | AATACTCTAAACTTAATGAA+AGG | + | chr4.3:17919817-17919836 | None:intergenic | 20.0% |
| !! | ACAGAAAAATATGTTTAAGT+TGG | - | chr4.3:17920899-17920918 | MS.gene023235:CDS | 20.0% |
| !! | CATCTGTTATTAAGAATATA+AGG | - | chr4.3:17920170-17920189 | MS.gene023235:CDS | 20.0% |
| !!! | AACTTAAACATATTTTTCTG+TGG | + | chr4.3:17920900-17920919 | None:intergenic | 20.0% |
| !!! | ATCTACAATTCAACAATTTT+AGG | + | chr4.3:17919465-17919484 | None:intergenic | 20.0% |
| !!! | TCTACAATTCAACAATTTTA+GGG | + | chr4.3:17919464-17919483 | None:intergenic | 20.0% |
| ! | AAATCAAGAGCAAGAATATA+TGG | - | chr4.3:17922246-17922265 | MS.gene023235:CDS | 25.0% |
| ! | AAATTCTGATTACTATCATG+GGG | - | chr4.3:17921142-17921161 | MS.gene023235:CDS | 25.0% |
| ! | AACAAAAAAATCTTCATGGA+TGG | + | chr4.3:17919491-17919510 | None:intergenic | 25.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | - | chr4.3:17919881-17919900 | MS.gene023235:CDS | 25.0% |
| ! | AATAATGACCAACAATCATT+TGG | - | chr4.3:17921851-17921870 | MS.gene023235:intron | 25.0% |
| ! | AATATATGGAAGATGAAGAT+GGG | - | chr4.3:17922260-17922279 | MS.gene023235:CDS | 25.0% |
| ! | ACAAAAAAATCTTCATGGAT+GGG | + | chr4.3:17919490-17919509 | None:intergenic | 25.0% |
| ! | AGAAATTCTGATTACTATCA+TGG | - | chr4.3:17921140-17921159 | MS.gene023235:CDS | 25.0% |
| ! | AGTATTTGAGTCTTGATTAT+AGG | - | chr4.3:17919940-17919959 | MS.gene023235:CDS | 25.0% |
| ! | ATAAGCTATTTATCCAAACA+GGG | - | chr4.3:17919882-17919901 | MS.gene023235:CDS | 25.0% |
| ! | GAAATTCTGATTACTATCAT+GGG | - | chr4.3:17921141-17921160 | MS.gene023235:CDS | 25.0% |
| ! | GTCTAACAAAAAAATCTTCA+TGG | + | chr4.3:17919495-17919514 | None:intergenic | 25.0% |
| ! | TTCTCTTCTTTATTGAAACA+GGG | - | chr4.3:17920254-17920273 | MS.gene023235:CDS | 25.0% |
| !! | CCTTTTGTATTTAACATAGT+GGG | - | chr4.3:17919619-17919638 | MS.gene023235:CDS | 25.0% |
| !! | TCCTTTTGTATTTAACATAG+TGG | - | chr4.3:17919618-17919637 | MS.gene023235:CDS | 25.0% |
| !!! | AAAAAGGGCTTTTTAGAAAA+AGG | + | chr4.3:17919296-17919315 | None:intergenic | 25.0% |
| !!! | GTTAGACTGTGAATTTTTTA+TGG | - | chr4.3:17919508-17919527 | MS.gene023235:CDS | 25.0% |
| !!! | TAATTTTGATTAATGGGGTT+TGG | - | chr4.3:17919407-17919426 | MS.gene023235:CDS | 25.0% |
| !!! | TGATCATCTTGTTATTTGAT+TGG | - | chr4.3:17919558-17919577 | MS.gene023235:CDS | 25.0% |
| !!! | TTTCAGATTCGAATTAGTTT+TGG | - | chr4.3:17919343-17919362 | MS.gene023235:CDS | 25.0% |
| AAAGGAATGATCAAAAAGAG+AGG | + | chr4.3:17919604-17919623 | None:intergenic | 30.0% | |
| AATGAAGGAATTACCGAAAA+CGG | - | chr4.3:17922022-17922041 | MS.gene023235:intron | 30.0% | |
| AGAATAAATCTTCCACCAAA+TGG | - | chr4.3:17921566-17921585 | MS.gene023235:intron | 30.0% | |
| AGTCAAAAGATAGGACAAAA+TGG | + | chr4.3:17920455-17920474 | None:intergenic | 30.0% | |
| ATACAGACAAGTCAAAAGAT+AGG | + | chr4.3:17920464-17920483 | None:intergenic | 30.0% | |
| ATATATGGAAGATGAAGATG+GGG | - | chr4.3:17922261-17922280 | MS.gene023235:CDS | 30.0% | |
| ATCATATGAGTCATAACCTT+GGG | + | chr4.3:17921294-17921313 | None:intergenic | 30.0% | |
| ATGAGTCCTTCTTTCTATTT+GGG | + | chr4.3:17921360-17921379 | None:intergenic | 30.0% | |
| CATGATGACAATAAGAATGA+AGG | - | chr4.3:17922007-17922026 | MS.gene023235:intron | 30.0% | |
| CCAAAAGGTTTCTTAAAACT+TGG | + | chr4.3:17920786-17920805 | None:intergenic | 30.0% | |
| CCCACTATGTTAAATACAAA+AGG | + | chr4.3:17919622-17919641 | None:intergenic | 30.0% | |
| CTTTGAATGAATACGATGTA+GGG | - | chr4.3:17921213-17921232 | MS.gene023235:intron | 30.0% | |
| GAATATATGGAAGATGAAGA+TGG | - | chr4.3:17922259-17922278 | MS.gene023235:CDS | 30.0% | |
| GATGAATTTGGTAAAACAAG+AGG | - | chr4.3:17921167-17921186 | MS.gene023235:CDS | 30.0% | |
| GCTTGTTTACTACCATTATA+AGG | + | chr4.3:17920624-17920643 | None:intergenic | 30.0% | |
| GTACATCATCTTCATATTGT+TGG | + | chr4.3:17921901-17921920 | None:intergenic | 30.0% | |
| GTTCTCTTCTTTATTGAAAC+AGG | - | chr4.3:17920253-17920272 | MS.gene023235:CDS | 30.0% | |
| TAGTTAACAAAACAACTTCC+AGG | + | chr4.3:17920011-17920030 | None:intergenic | 30.0% | |
| TCTTTGAATGAATACGATGT+AGG | - | chr4.3:17921212-17921231 | MS.gene023235:intron | 30.0% | |
| TGTTTACTACCATTATAAGG+CGG | + | chr4.3:17920621-17920640 | None:intergenic | 30.0% | |
| TTGAAAAACATGCACAAGAA+AGG | - | chr4.3:17920811-17920830 | MS.gene023235:CDS | 30.0% | |
| ! | AGAATTTCACTAAGTGGTTT+TGG | + | chr4.3:17921935-17921954 | None:intergenic | 30.0% |
| ! | CCTTGCATTTTCTTTCAAAA+GGG | - | chr4.3:17920648-17920667 | MS.gene023235:CDS | 30.0% |
| ! | CTTGCATTTTCTTTCAAAAG+GGG | - | chr4.3:17920649-17920668 | MS.gene023235:CDS | 30.0% |
| ! | TATGAGTATGAACAAGTTGA+GGG | - | chr4.3:17922220-17922239 | MS.gene023235:CDS | 30.0% |
| ! | TTAAGTTCAGCAAGACTTTT+TGG | + | chr4.3:17921812-17921831 | None:intergenic | 30.0% |
| !! | TTTTTATGGATTGCGTTTCT+TGG | - | chr4.3:17919522-17919541 | MS.gene023235:CDS | 30.0% |
| !!! | ACATGCTGCTTTTATTTTTG+TGG | - | chr4.3:17920099-17920118 | MS.gene023235:CDS | 30.0% |
| !!! | AGTTTTAAGAAACCTTTTGG+CGG | - | chr4.3:17920786-17920805 | MS.gene023235:CDS | 30.0% |
| !!! | CCAAGTTTTAAGAAACCTTT+TGG | - | chr4.3:17920783-17920802 | MS.gene023235:CDS | 30.0% |
| !!! | TATCTTTTGACTTGTCTGTA+TGG | - | chr4.3:17920463-17920482 | MS.gene023235:CDS | 30.0% |
| !!! | TGTGTTTTTTTGAGTAATCC+TGG | - | chr4.3:17919990-17920009 | MS.gene023235:CDS | 30.0% |
| AACCAATACCAACAATCTCT+AGG | + | chr4.3:17920323-17920342 | None:intergenic | 35.0% | |
| AAGAACAACACCAATCTTCT+TGG | + | chr4.3:17922296-17922315 | None:intergenic | 35.0% | |
| AATAATAATAGGGCCCTGTT+TGG | + | chr4.3:17919898-17919917 | None:intergenic | 35.0% | |
| ACCAACAATCATTTGGAAAG+AGG | - | chr4.3:17921858-17921877 | MS.gene023235:intron | 35.0% | |
| ACCACTTAGTGAAATTCTGA+AGG | - | chr4.3:17921937-17921956 | MS.gene023235:intron | 35.0% | |
| ACTGCTAACAAACACTATAC+AGG | + | chr4.3:17919970-17919989 | None:intergenic | 35.0% | |
| AGCAAGAAAGTAGACACAAT+CGG | + | chr4.3:17919235-17919254 | None:intergenic | 35.0% | |
| AGTCTTGCTGAACTTAAGTA+TGG | - | chr4.3:17921815-17921834 | MS.gene023235:intron | 35.0% | |
| ATAAATCTTCCACCAAATGG+TGG | - | chr4.3:17921569-17921588 | MS.gene023235:intron | 35.0% | |
| ATCCTAGAGATTGTTGGTAT+TGG | - | chr4.3:17920318-17920337 | MS.gene023235:CDS | 35.0% | |
| ATCTCTCATTTGAAGGTAAC+TGG | + | chr4.3:17921523-17921542 | None:intergenic | 35.0% | |
| CATGTGTATAGTGTAGTGAA+TGG | - | chr4.3:17919791-17919810 | MS.gene023235:CDS | 35.0% | |
| CGTATTCATTCAAAGAGTCT+GGG | + | chr4.3:17921208-17921227 | None:intergenic | 35.0% | |
| CTATGGAAATTGTGATCATC+TGG | + | chr4.3:17921050-17921069 | None:intergenic | 35.0% | |
| GAACCCTAATTGTGATTGTT+AGG | - | chr4.3:17919671-17919690 | MS.gene023235:CDS | 35.0% | |
| GAAGATGATGTACCATTTGA+AGG | - | chr4.3:17921908-17921927 | MS.gene023235:intron | 35.0% | |
| GATCATATGAGTCATAACCT+TGG | + | chr4.3:17921295-17921314 | None:intergenic | 35.0% | |
| GATGAGTCCTTCTTTCTATT+TGG | + | chr4.3:17921361-17921380 | None:intergenic | 35.0% | |
| GATGATCACAATTTCCATAG+TGG | - | chr4.3:17921050-17921069 | MS.gene023235:intron | 35.0% | |
| GGTCCTAACAATCACAATTA+GGG | + | chr4.3:17919677-17919696 | None:intergenic | 35.0% | |
| GTATGAGTATGAACAAGTTG+AGG | - | chr4.3:17922219-17922238 | MS.gene023235:CDS | 35.0% | |
| GTCTTGCTGAACTTAAGTAT+GGG | - | chr4.3:17921816-17921835 | MS.gene023235:intron | 35.0% | |
| GTGAAGGAAATTAGGATGAA+CGG | - | chr4.3:17919641-17919660 | MS.gene023235:CDS | 35.0% | |
| TATCATGGGGAAGATGAATT+TGG | - | chr4.3:17921155-17921174 | MS.gene023235:CDS | 35.0% | |
| TCACAATTTCCATAGTGGTA+AGG | - | chr4.3:17921055-17921074 | MS.gene023235:intron | 35.0% | |
| TCATATGAGTCATAACCTTG+GGG | + | chr4.3:17921293-17921312 | None:intergenic | 35.0% | |
| TCCTCTTTCCAAATGATTGT+TGG | + | chr4.3:17921862-17921881 | None:intergenic | 35.0% | |
| TCCTTCAGAATTTCACTAAG+TGG | + | chr4.3:17921941-17921960 | None:intergenic | 35.0% | |
| TCGTATTCATTCAAAGAGTC+TGG | + | chr4.3:17921209-17921228 | None:intergenic | 35.0% | |
| TGAAGGAAATTAGGATGAAC+GGG | - | chr4.3:17919642-17919661 | MS.gene023235:CDS | 35.0% | |
| TGGTCCTAACAATCACAATT+AGG | + | chr4.3:17919678-17919697 | None:intergenic | 35.0% | |
| TTGAAAGAAAATGCAAGGCA+CGG | + | chr4.3:17920646-17920665 | None:intergenic | 35.0% | |
| TTGACAGATCTCTCATTTGA+AGG | + | chr4.3:17921530-17921549 | None:intergenic | 35.0% | |
| ! | AAGAACCTTTTTGCATGTCA+AGG | + | chr4.3:17919262-17919281 | None:intergenic | 35.0% |
| ! | AGAACCTTTTTGCATGTCAA+GGG | + | chr4.3:17919261-17919280 | None:intergenic | 35.0% |
| ! | CAAAAGGGGTTTTGCTTAAA+AGG | - | chr4.3:17920663-17920682 | MS.gene023235:CDS | 35.0% |
| ! | CTATTTTACTGCCATTGGTA+GGG | + | chr4.3:17920719-17920738 | None:intergenic | 35.0% |
| ! | GAAATTCTGAAGGAGAAGAA+AGG | - | chr4.3:17921947-17921966 | MS.gene023235:intron | 35.0% |
| ! | GCCTTGCATTTTCTTTCAAA+AGG | - | chr4.3:17920647-17920666 | MS.gene023235:CDS | 35.0% |
| !! | CCCTTTTGAAAGAAAATGCA+AGG | + | chr4.3:17920651-17920670 | None:intergenic | 35.0% |
| !! | GATTGTTGGTATTGGTTGAA+TGG | - | chr4.3:17920326-17920345 | MS.gene023235:CDS | 35.0% |
| !! | GTATTTAACATAGTGGGTGA+AGG | - | chr4.3:17919625-17919644 | MS.gene023235:CDS | 35.0% |
| !! | TGTAGCTATTTTACTGCCAT+TGG | + | chr4.3:17920724-17920743 | None:intergenic | 35.0% |
| !!! | AGCAAAGTCATCGATTTTCT+CGG | - | chr4.3:17921486-17921505 | MS.gene023235:intron | 35.0% |
| AACACCTGCAACATTTGCTT+GGG | + | chr4.3:17920844-17920863 | None:intergenic | 40.0% | |
| ACAAGAGGTCAAGATGAAAG+AGG | - | chr4.3:17921182-17921201 | MS.gene023235:intron | 40.0% | |
| ACCTTCATACTCCTGATCTT+CGG | + | chr4.3:17922164-17922183 | None:intergenic | 40.0% | |
| ACCTTCCTCTTAATCTATCC+TGG | + | chr4.3:17921724-17921743 | None:intergenic | 40.0% | |
| AGGATCCAGGATAGATTAAG+AGG | - | chr4.3:17921716-17921735 | MS.gene023235:intron | 40.0% | |
| CTCAAGATGAAGCCTTGAAA+AGG | - | chr4.3:17919205-17919224 | MS.gene023235:CDS | 40.0% | |
| GAAGGAAATTAGGATGAACG+GGG | - | chr4.3:17919643-17919662 | MS.gene023235:CDS | 40.0% | |
| GACAATACTGATGCAACTCA+CGG | - | chr4.3:17922100-17922119 | MS.gene023235:intron | 40.0% | |
| GAGTCAATCCTAGAGATTGT+TGG | - | chr4.3:17920312-17920331 | MS.gene023235:CDS | 40.0% | |
| GATCAGCCCAAATAGAAAGA+AGG | - | chr4.3:17921351-17921370 | MS.gene023235:intron | 40.0% | |
| GATGACTTTGCCAAGAAGAT+TGG | - | chr4.3:17922283-17922302 | MS.gene023235:CDS | 40.0% | |
| GCAGTAAAATAGCTACACAG+GGG | - | chr4.3:17920727-17920746 | MS.gene023235:CDS | 40.0% | |
| GCTGATGTCAATTGAGCATT+TGG | - | chr4.3:17919757-17919776 | MS.gene023235:CDS | 40.0% | |
| GGAGACTATGAATATGAGCA+AGG | - | chr4.3:17922187-17922206 | MS.gene023235:intron | 40.0% | |
| GGCAGTAAAATAGCTACACA+GGG | - | chr4.3:17920726-17920745 | MS.gene023235:CDS | 40.0% | |
| GTGGAAGATTTATTCTGCCT+CGG | + | chr4.3:17921562-17921581 | None:intergenic | 40.0% | |
| TAAAGAAACTCACCGGATGA+CGG | + | chr4.3:17920379-17920398 | None:intergenic | 40.0% | |
| TCAATGACAATGACCAACCA+AGG | - | chr4.3:17920750-17920769 | MS.gene023235:CDS | 40.0% | |
| TCCAGGATAGATTAAGAGGA+AGG | - | chr4.3:17921720-17921739 | MS.gene023235:intron | 40.0% | |
| TCTGTCAATAATCGTTTCCG+AGG | - | chr4.3:17921542-17921561 | MS.gene023235:intron | 40.0% | |
| TGAATATGAGCAAGGTGATG+AGG | - | chr4.3:17922195-17922214 | MS.gene023235:intron | 40.0% | |
| TGACTCTAGCATACTCACTA+TGG | + | chr4.3:17920298-17920317 | None:intergenic | 40.0% | |
| TGGAAAGAGGAAAAGCTTCA+GGG | - | chr4.3:17921871-17921890 | MS.gene023235:intron | 40.0% | |
| TGGCAGTAAAATAGCTACAC+AGG | - | chr4.3:17920725-17920744 | MS.gene023235:CDS | 40.0% | |
| TTCTCCCTTGACATGCAAAA+AGG | - | chr4.3:17919254-17919273 | MS.gene023235:CDS | 40.0% | |
| TTGCTGAACTTAAGTATGGG+AGG | - | chr4.3:17921819-17921838 | MS.gene023235:intron | 40.0% | |
| TTGGAAAGAGGAAAAGCTTC+AGG | - | chr4.3:17921870-17921889 | MS.gene023235:intron | 40.0% | |
| ! | AATCTGAAGTTGTGGCTGTT+GGG | + | chr4.3:17919160-17919179 | None:intergenic | 40.0% |
| ! | CTCTGACAATGTTCCGTTTT+CGG | + | chr4.3:17922038-17922057 | None:intergenic | 40.0% |
| ! | GACATCAGCTTACACTTTTG+TGG | + | chr4.3:17919746-17919765 | None:intergenic | 40.0% |
| ! | GTCATCATGTTTGCTACTGT+GGG | + | chr4.3:17921996-17922015 | None:intergenic | 40.0% |
| ! | GTGGAGCAGTCTCAAATTTT+TGG | + | chr4.3:17920881-17920900 | None:intergenic | 40.0% |
| ! | TGAGTCTGAATCTGAAGTTG+TGG | + | chr4.3:17919168-17919187 | None:intergenic | 40.0% |
| ! | TGTCATCATGTTTGCTACTG+TGG | + | chr4.3:17921997-17922016 | None:intergenic | 40.0% |
| ! | TTTTACATGCAGCCTCTTGA+CGG | - | chr4.3:17920507-17920526 | MS.gene023235:CDS | 40.0% |
| !! | ACAATCGGTGTTCCTTTTCA+AGG | + | chr4.3:17919220-17919239 | None:intergenic | 40.0% |
| !! | CATAGTGGGTGAAGGAAATT+AGG | - | chr4.3:17919633-17919652 | MS.gene023235:CDS | 40.0% |
| !! | CTTTTCAAGGCTTCATCTTG+AGG | + | chr4.3:17919207-17919226 | None:intergenic | 40.0% |
| !! | GCAGTCTCAAATTTTTGGAC+AGG | + | chr4.3:17920876-17920895 | None:intergenic | 40.0% |
| !! | GCTATTTTACTGCCATTGGT+AGG | + | chr4.3:17920720-17920739 | None:intergenic | 40.0% |
| !! | TGTTTTTCAATGCCGCCAAA+AGG | + | chr4.3:17920801-17920820 | None:intergenic | 40.0% |
| !!! | AAGTCATCGATTTTCTCGGA+AGG | - | chr4.3:17921490-17921509 | MS.gene023235:intron | 40.0% |
| !!! | AGTGGTTTTGGACCTTCAAA+TGG | + | chr4.3:17921923-17921942 | None:intergenic | 40.0% |
| AAAGGACAGAAAACTCGTGC+TGG | + | chr4.3:17920402-17920421 | None:intergenic | 45.0% | |
| AACTCACGGTCAATCATCTG+AGG | - | chr4.3:17922114-17922133 | MS.gene023235:intron | 45.0% | |
| AACTTGGATTCTCAGCTCCT+TGG | + | chr4.3:17920770-17920789 | None:intergenic | 45.0% | |
| AAGGCTTCATCTTGAGGAGA+AGG | + | chr4.3:17919201-17919220 | None:intergenic | 45.0% | |
| AAGTTTCTCCTCTCGTCATC+TGG | + | chr4.3:17921749-17921768 | None:intergenic | 45.0% | |
| ACCATTATAAGGCGGTGCAT+GGG | + | chr4.3:17920613-17920632 | None:intergenic | 45.0% | |
| ACCTGCAGGGTTAGATAATG+AGG | - | chr4.3:17920941-17920960 | MS.gene023235:intron | 45.0% | |
| ACTTCCCAAGCAAATGTTGC+AGG | - | chr4.3:17920837-17920856 | MS.gene023235:CDS | 45.0% | |
| ATATGGCTGGGAACCTAGAA+AGG | - | chr4.3:17921328-17921347 | MS.gene023235:intron | 45.0% | |
| ATTTGGGCTGATCCCTTTCT+AGG | + | chr4.3:17921344-17921363 | None:intergenic | 45.0% | |
| CAACACCTGCAACATTTGCT+TGG | + | chr4.3:17920845-17920864 | None:intergenic | 45.0% | |
| CAAGTGTTCATTCCGTCATC+CGG | - | chr4.3:17920364-17920383 | MS.gene023235:CDS | 45.0% | |
| CGTCATTGTCCTTACCACTA+TGG | + | chr4.3:17921067-17921086 | None:intergenic | 45.0% | |
| CTCTAGCATACTCACTATGG+CGG | + | chr4.3:17920295-17920314 | None:intergenic | 45.0% | |
| CTGAAGGAGAAGAAAGGAGT+TGG | - | chr4.3:17921953-17921972 | MS.gene023235:intron | 45.0% | |
| GATCACATGCAAGAGCCATA+TGG | - | chr4.3:17921311-17921330 | MS.gene023235:intron | 45.0% | |
| GCTACAAGAACATCAAACCC+AGG | + | chr4.3:17921110-17921129 | None:intergenic | 45.0% | |
| GGAAGAAGAGTCCAAGATTC+AGG | - | chr4.3:17922063-17922082 | MS.gene023235:intron | 45.0% | |
| GTTGATGCACACGATTAGAC+CGG | + | chr4.3:17921019-17921038 | None:intergenic | 45.0% | |
| TACCATTATAAGGCGGTGCA+TGG | + | chr4.3:17920614-17920633 | None:intergenic | 45.0% | |
| TATGGCTGGGAACCTAGAAA+GGG | - | chr4.3:17921329-17921348 | MS.gene023235:intron | 45.0% | |
| TCATTATCTAACCCTGCAGG+TGG | + | chr4.3:17920942-17920961 | None:intergenic | 45.0% | |
| TGCGCTTGGATAAACGATGT+CGG | + | chr4.3:17921424-17921443 | None:intergenic | 45.0% | |
| TTACTGCCATTGGTAGGGTT+TGG | + | chr4.3:17920714-17920733 | None:intergenic | 45.0% | |
| TTGATGCACACGATTAGACC+GGG | + | chr4.3:17921018-17921037 | None:intergenic | 45.0% | |
| TTGGACAGAGGAAGAATCAG+TGG | - | chr4.3:17921653-17921672 | MS.gene023235:intron | 45.0% | |
| TTGTGATCATCTGGCAAACG+AGG | + | chr4.3:17921041-17921060 | None:intergenic | 45.0% | |
| TTTACATGCAGCCTCTTGAC+GGG | - | chr4.3:17920508-17920527 | MS.gene023235:CDS | 45.0% | |
| TTTCTAGGTTCCCAGCCATA+TGG | + | chr4.3:17921329-17921348 | None:intergenic | 45.0% | |
| ! | ATCATGTTTGCTACTGTGGG+AGG | + | chr4.3:17921993-17922012 | None:intergenic | 45.0% |
| ! | GAATCTGAAGTTGTGGCTGT+TGG | + | chr4.3:17919161-17919180 | None:intergenic | 45.0% |
| ! | GATCAGGAGTATGAAGGTGA+AGG | - | chr4.3:17922166-17922185 | MS.gene023235:intron | 45.0% |
| ! | GTGCTGGTAAAGAAACTCAC+CGG | + | chr4.3:17920386-17920405 | None:intergenic | 45.0% |
| ! | TCATCTTGAGGAGAAGGTGT+TGG | + | chr4.3:17919195-17919214 | None:intergenic | 45.0% |
| !! | GGATGACGGAATGAACACTT+GGG | + | chr4.3:17920365-17920384 | None:intergenic | 45.0% |
| !! | TAATAAAATAACAAAAATTA+TGG | + | chr4.3:17919698-17919717 | None:intergenic | 5.0% |
| !!! | AAAAATTTAATTTTGATTAA+TGG | - | chr4.3:17919400-17919419 | MS.gene023235:CDS | 5.0% |
| !!! | AAAATTTAATTTTGATTAAT+GGG | - | chr4.3:17919401-17919420 | MS.gene023235:CDS | 5.0% |
| !!! | CTTTTTATTTTAATAATAAT+AGG | + | chr4.3:17919909-17919928 | None:intergenic | 5.0% |
| AACCAGCAGTCACCTAGAGA+GGG | - | chr4.3:17921628-17921647 | MS.gene023235:intron | 50.0% | |
| AAGGCTTCAATCGCCTCATG+AGG | - | chr4.3:17921691-17921710 | MS.gene023235:intron | 50.0% | |
| ACACGATTAGACCGGGCATT+AGG | + | chr4.3:17921011-17921030 | None:intergenic | 50.0% | |
| ACAGAGGAAGAATCAGTGGC+CGG | - | chr4.3:17921657-17921676 | MS.gene023235:intron | 50.0% | |
| ACATGCAAGAGCCATATGGC+TGG | - | chr4.3:17921315-17921334 | MS.gene023235:intron | 50.0% | |
| ACCCATGCACCGCCTTATAA+TGG | - | chr4.3:17920609-17920628 | MS.gene023235:CDS | 50.0% | |
| AGGCTTCAATCGCCTCATGA+GGG | - | chr4.3:17921692-17921711 | MS.gene023235:intron | 50.0% | |
| AGGTGACTGTCACCACCATT+TGG | + | chr4.3:17921584-17921603 | None:intergenic | 50.0% | |
| ATCTGTCGTCGCTCATGATG+AGG | - | chr4.3:17921463-17921482 | MS.gene023235:intron | 50.0% | |
| CACGGTCAATCATCTGAGGA+AGG | - | chr4.3:17922118-17922137 | MS.gene023235:intron | 50.0% | |
| CATGCAAGAGCCATATGGCT+GGG | - | chr4.3:17921316-17921335 | MS.gene023235:intron | 50.0% | |
| CATGGACCAAACCCTACCAA+TGG | - | chr4.3:17920705-17920724 | MS.gene023235:CDS | 50.0% | |
| CGGAACATTGTCAGAGAGCA+AGG | - | chr4.3:17922042-17922061 | MS.gene023235:intron | 50.0% | |
| CGTTTATCCAAGCGCAGGAA+GGG | - | chr4.3:17921428-17921447 | MS.gene023235:intron | 50.0% | |
| CTAGAGAGGGACTTAGACAG+AGG | - | chr4.3:17921602-17921621 | MS.gene023235:intron | 50.0% | |
| CTCTGTCTAAGTCCCTCTCT+AGG | + | chr4.3:17921604-17921623 | None:intergenic | 50.0% | |
| CTTCAGCAGTCGATCGAATG+AGG | - | chr4.3:17921766-17921785 | MS.gene023235:intron | 50.0% | |
| GAAGCCTTCCAGATGACAAC+CGG | + | chr4.3:17921679-17921698 | None:intergenic | 50.0% | |
| GACATCGTTTATCCAAGCGC+AGG | - | chr4.3:17921423-17921442 | MS.gene023235:intron | 50.0% | |
| GAGAAGAAAGGAGTTGGAGC+TGG | - | chr4.3:17921959-17921978 | MS.gene023235:intron | 50.0% | |
| GATAGATTTCGTGTGCCCCA+AGG | - | chr4.3:17921275-17921294 | MS.gene023235:intron | 50.0% | |
| GATCGAATGAGGACCGAAGT+GGG | - | chr4.3:17921777-17921796 | MS.gene023235:intron | 50.0% | |
| GCCTCATTATCTAACCCTGC+AGG | + | chr4.3:17920945-17920964 | None:intergenic | 50.0% | |
| GTTCCTAACAACCCGTCAAG+AGG | + | chr4.3:17920522-17920541 | None:intergenic | 50.0% | |
| TCCAAGATTCAGGCTGCTGA+TGG | - | chr4.3:17922073-17922092 | MS.gene023235:intron | 50.0% | |
| TCCATCAGCAGCCTGAATCT+TGG | + | chr4.3:17922077-17922096 | None:intergenic | 50.0% | |
| TCGTAGTCCTGACAGTGTTG+AGG | - | chr4.3:17921388-17921407 | MS.gene023235:intron | 50.0% | |
| TCGTTTATCCAAGCGCAGGA+AGG | - | chr4.3:17921427-17921446 | MS.gene023235:intron | 50.0% | |
| TGACTGTCACCACCATTTGG+TGG | + | chr4.3:17921581-17921600 | None:intergenic | 50.0% | |
| TGGATTCTCAGCTCCTTGGT+TGG | + | chr4.3:17920766-17920785 | None:intergenic | 50.0% | |
| TGGTGACAGTCACCTAGAGA+GGG | - | chr4.3:17921589-17921608 | MS.gene023235:intron | 50.0% | |
| TTATCTAACCCTGCAGGTGG+TGG | + | chr4.3:17920939-17920958 | None:intergenic | 50.0% | |
| TTCAATCGCCTCATGAGGGA+AGG | - | chr4.3:17921696-17921715 | MS.gene023235:intron | 50.0% | |
| TTCTCAGAGAGTCGTCTCCT+GGG | - | chr4.3:17921090-17921109 | MS.gene023235:CDS | 50.0% | |
| TTGTGGCTGTGCGAATCATG+TGG | - | chr4.3:17920116-17920135 | MS.gene023235:CDS | 50.0% | |
| TTTCTCAGAGAGTCGTCTCC+TGG | - | chr4.3:17921089-17921108 | MS.gene023235:CDS | 50.0% | |
| ! | GCCGAAGATCAGGAGTATGA+AGG | - | chr4.3:17922160-17922179 | MS.gene023235:intron | 50.0% |
| ! | TCTGAGACCTCAACACTGTC+AGG | + | chr4.3:17921398-17921417 | None:intergenic | 50.0% |
| !! | CGGATGACGGAATGAACACT+TGG | + | chr4.3:17920366-17920385 | None:intergenic | 50.0% |
| AAAGGAGTTGGAGCTGGTGC+AGG | - | chr4.3:17921965-17921984 | MS.gene023235:intron | 55.0% | |
| AGTTCTCCACCGCCAACCAA+TGG | - | chr4.3:17920984-17921003 | MS.gene023235:intron | 55.0% | |
| ATCAGTGGCCGGTTGTCATC+TGG | - | chr4.3:17921668-17921687 | MS.gene023235:intron | 55.0% | |
| CAACCAATGGGCCTAATGCC+CGG | - | chr4.3:17920997-17921016 | MS.gene023235:intron | 55.0% | |
| CAGTCACCTAGAGAGGGACT+TGG | - | chr4.3:17921595-17921614 | MS.gene023235:intron | 55.0% | |
| CGATCGAATGAGGACCGAAG+TGG | - | chr4.3:17921776-17921795 | MS.gene023235:intron | 55.0% | |
| CGATGAAGCTGCCGAAGATC+AGG | - | chr4.3:17922150-17922169 | MS.gene023235:intron | 55.0% | |
| CGGGTTGTTAGGAACACCAC+CGG | - | chr4.3:17920527-17920546 | MS.gene023235:CDS | 55.0% | |
| CTAGAGAGGGACTTGGACAG+AGG | - | chr4.3:17921641-17921660 | MS.gene023235:intron | 55.0% | |
| CTCTGTCCAAGTCCCTCTCT+AGG | + | chr4.3:17921643-17921662 | None:intergenic | 55.0% | |
| GAACCAGCAGTCACCTAGAG+AGG | - | chr4.3:17921627-17921646 | MS.gene023235:intron | 55.0% | |
| GAAGGTTGCCAGATGACGAG+AGG | - | chr4.3:17921738-17921757 | MS.gene023235:intron | 55.0% | |
| GACAGATGTGCCTTCCTGCA+TGG | - | chr4.3:17920687-17920706 | MS.gene023235:CDS | 55.0% | |
| GCAGATGTTGCCGCAATCTG+TGG | + | chr4.3:17920588-17920607 | None:intergenic | 55.0% | |
| GTGGTGACAGTCACCTAGAG+AGG | - | chr4.3:17921588-17921607 | MS.gene023235:intron | 55.0% | |
| GTTCTCCACCGCCAACCAAT+GGG | - | chr4.3:17920985-17921004 | MS.gene023235:intron | 55.0% | |
| TCCAAGCGCAGGAAGGGAAA+CGG | - | chr4.3:17921434-17921453 | MS.gene023235:intron | 55.0% | |
| TCCTGGATCCTTCCCTCATG+AGG | + | chr4.3:17921707-17921726 | None:intergenic | 55.0% | |
| TTGGCGCAGAGAACCCACTT+CGG | + | chr4.3:17921793-17921812 | None:intergenic | 55.0% | |
| ! | AGGGTTTGGTCCATGCAGGA+AGG | + | chr4.3:17920700-17920719 | None:intergenic | 55.0% |
| ! | GCATTAGGCCCATTGGTTGG+CGG | + | chr4.3:17920996-17921015 | None:intergenic | 55.0% |
| ! | TGGTAGGGTTTGGTCCATGC+AGG | + | chr4.3:17920704-17920723 | None:intergenic | 55.0% |
| !! | CAGCCTCTTGACGGGTTGTT+AGG | - | chr4.3:17920516-17920535 | MS.gene023235:CDS | 55.0% |
| AGACCGGGCATTAGGCCCAT+TGG | + | chr4.3:17921003-17921022 | None:intergenic | 60.0% | |
| ATCTGTGGCGTGGGGACAGA+TGG | + | chr4.3:17920573-17920592 | None:intergenic | 60.0% | |
| ATGTACCGCCACCACCTGCA+GGG | - | chr4.3:17920928-17920947 | MS.gene023235:CDS | 60.0% | |
| CGGGCATTAGGCCCATTGGT+TGG | + | chr4.3:17920999-17921018 | None:intergenic | 60.0% | |
| GCCTCATGAGGGAAGGATCC+AGG | - | chr4.3:17921703-17921722 | MS.gene023235:intron | 60.0% | |
| GTCCCTCTCTAGGTGACTGC+TGG | + | chr4.3:17921633-17921652 | None:intergenic | 60.0% | |
| GTGGCCGGTTGTCATCTGGA+AGG | - | chr4.3:17921672-17921691 | MS.gene023235:intron | 60.0% | |
| GTTGCCGCAATCTGTGGCGT+GGG | + | chr4.3:17920582-17920601 | None:intergenic | 60.0% | |
| TGTCCCCACGCCACAGATTG+CGG | - | chr4.3:17920575-17920594 | MS.gene023235:CDS | 60.0% | |
| TGTTGCCGCAATCTGTGGCG+TGG | + | chr4.3:17920583-17920602 | None:intergenic | 60.0% | |
| TTGCCGCAATCTGTGGCGTG+GGG | + | chr4.3:17920581-17920600 | None:intergenic | 60.0% | |
| ! | TCTAACCCTGCAGGTGGTGG+CGG | + | chr4.3:17920936-17920955 | None:intergenic | 60.0% |
| ! | TTAGGCCCATTGGTTGGCGG+TGG | + | chr4.3:17920993-17921012 | None:intergenic | 60.0% |
| CATGTACCGCCACCACCTGC+AGG | - | chr4.3:17920927-17920946 | MS.gene023235:CDS | 65.0% | |
| CCAGCAGCAGCAGCAGTTGC+CGG | + | chr4.3:17920549-17920568 | None:intergenic | 65.0% | |
| GCCGTTTCCCTTCCTGCGCT+TGG | + | chr4.3:17921438-17921457 | None:intergenic | 65.0% | |
| CCGGCAACTGCTGCTGCTGC+TGG | - | chr4.3:17920546-17920565 | MS.gene023235:CDS | 70.0% | |
| GCAGCAGCAGCAGTTGCCGG+TGG | + | chr4.3:17920546-17920565 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 17919150 | 17922321 | 17919150 | ID=MS.gene023235 |
| chr4.3 | mRNA | 17919150 | 17922321 | 17919150 | ID=MS.gene023235.t1;Parent=MS.gene023235 |
| chr4.3 | exon | 17922196 | 17922321 | 17922196 | ID=MS.gene023235.t1.exon1;Parent=MS.gene023235.t1 |
| chr4.3 | CDS | 17922196 | 17922321 | 17922196 | ID=cds.MS.gene023235.t1;Parent=MS.gene023235.t1 |
| chr4.3 | exon | 17921086 | 17921196 | 17921086 | ID=MS.gene023235.t1.exon2;Parent=MS.gene023235.t1 |
| chr4.3 | CDS | 17921086 | 17921196 | 17921086 | ID=cds.MS.gene023235.t1;Parent=MS.gene023235.t1 |
| chr4.3 | exon | 17919150 | 17920952 | 17919150 | ID=MS.gene023235.t1.exon3;Parent=MS.gene023235.t1 |
| chr4.3 | CDS | 17919150 | 17920952 | 17919150 | ID=cds.MS.gene023235.t1;Parent=MS.gene023235.t1 |
| Gene Sequence |
| Protein sequence |
