Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023254.t1 | AFK41866.1 | 96.8 | 280 | 9 | 0 | 1 | 280 | 1 | 280 | 2.00E-156 | 561.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023254.t1 | Q9SKD0 | 54.5 | 297 | 104 | 10 | 1 | 280 | 1 | 283 | 2.7e-72 | 273.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023254.t1 | I3TAB3 | 96.8 | 280 | 9 | 0 | 1 | 280 | 1 | 280 | 1.5e-156 | 561.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene023254.t1 | TF | BBR-BPC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023254.t1 | MTR_2g035730 | 69.106 | 123 | 9 | 2 | 27 | 149 | 1 | 94 | 3.47e-47 | 153 |
| MS.gene023254.t1 | MTR_1g023660 | 56.604 | 106 | 46 | 0 | 175 | 280 | 235 | 340 | 2.31e-42 | 148 |
| MS.gene023254.t1 | MTR_8g099780 | 53.846 | 104 | 48 | 0 | 177 | 280 | 209 | 312 | 2.85e-40 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023254.t1 | AT2G01930 | 55.219 | 297 | 102 | 10 | 1 | 280 | 1 | 283 | 1.23e-97 | 288 |
| MS.gene023254.t1 | AT2G01930 | 55.219 | 297 | 102 | 10 | 1 | 280 | 1 | 283 | 1.23e-97 | 288 |
| MS.gene023254.t1 | AT1G14685 | 51.342 | 298 | 108 | 11 | 1 | 280 | 1 | 279 | 3.32e-88 | 264 |
| MS.gene023254.t1 | AT1G14685 | 51.342 | 298 | 108 | 11 | 1 | 280 | 1 | 279 | 3.32e-88 | 264 |
| MS.gene023254.t1 | AT1G14685 | 51.342 | 298 | 108 | 11 | 1 | 280 | 1 | 279 | 3.32e-88 | 264 |
| MS.gene023254.t1 | AT1G14685 | 51.342 | 298 | 108 | 11 | 1 | 280 | 1 | 279 | 3.32e-88 | 264 |
| MS.gene023254.t1 | AT1G68120 | 46.735 | 291 | 122 | 9 | 1 | 280 | 1 | 269 | 1.66e-74 | 229 |
| MS.gene023254.t1 | AT2G35550 | 47.159 | 176 | 81 | 2 | 108 | 280 | 60 | 226 | 7.90e-50 | 164 |
| MS.gene023254.t1 | AT2G35550 | 47.159 | 176 | 81 | 2 | 108 | 280 | 60 | 226 | 7.90e-50 | 164 |
| MS.gene023254.t1 | AT2G35550 | 47.159 | 176 | 81 | 2 | 108 | 280 | 60 | 226 | 7.90e-50 | 164 |
| MS.gene023254.t1 | AT2G35550 | 47.159 | 176 | 81 | 2 | 108 | 280 | 105 | 271 | 1.59e-49 | 165 |
| MS.gene023254.t1 | AT5G42520 | 56.190 | 105 | 45 | 1 | 177 | 280 | 178 | 282 | 9.86e-40 | 140 |
| MS.gene023254.t1 | AT5G42520 | 56.190 | 105 | 45 | 1 | 177 | 280 | 234 | 338 | 2.23e-39 | 140 |
| MS.gene023254.t1 | AT2G21240 | 52.885 | 104 | 49 | 0 | 177 | 280 | 193 | 296 | 2.84e-39 | 139 |
| MS.gene023254.t1 | AT2G21240 | 52.885 | 104 | 49 | 0 | 177 | 280 | 193 | 296 | 2.84e-39 | 139 |
| MS.gene023254.t1 | AT5G42520 | 56.190 | 105 | 45 | 1 | 177 | 280 | 238 | 342 | 3.12e-39 | 140 |
| MS.gene023254.t1 | AT4G38910 | 51.485 | 101 | 49 | 0 | 180 | 280 | 158 | 258 | 4.43e-38 | 135 |
| MS.gene023254.t1 | AT4G38910 | 51.485 | 101 | 49 | 0 | 180 | 280 | 183 | 283 | 6.98e-38 | 135 |
Find 83 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAAAGAACAGCATAATT+TGG | 0.171926 | 4.3:+17623778 | None:intergenic |
| CTTCGGCTTCCTGGGCTTCT+TGG | 0.176884 | 4.3:+17623606 | None:intergenic |
| GCTATCATCCTTCGGCTTCC+TGG | 0.179821 | 4.3:+17623597 | None:intergenic |
| GGAATTGAAATGGACATTTC+TGG | 0.204966 | 4.3:-17623517 | MS.gene023254:CDS |
| TTCCTGGGCTTCTTGGCTTT+TGG | 0.290426 | 4.3:+17623613 | None:intergenic |
| GCCACGAGATTGTGCTGTTT+CGG | 0.312141 | 4.3:-17623881 | MS.gene023254:CDS |
| CTTTGCCGATGAGCATAAAA+AGG | 0.358237 | 4.3:-17623387 | MS.gene023254:CDS |
| AGCGAAGAAAAGGAAGTCTA+AGG | 0.361093 | 4.3:-17623650 | MS.gene023254:CDS |
| TTAACTATGTGAGGGATAAC+TGG | 0.365336 | 4.3:-17623843 | MS.gene023254:CDS |
| TTCTCATTTCTTGATGCATC+AGG | 0.374898 | 4.3:+17623718 | None:intergenic |
| ATCACAATCACTCTCCTTGC+CGG | 0.381788 | 4.3:-17623752 | MS.gene023254:CDS |
| ATCGCTGGGGCGTTGGAGGC+TGG | 0.384018 | 4.3:-17623447 | MS.gene023254:CDS |
| TGAAATCAATGGAATTGAAA+TGG | 0.399496 | 4.3:-17623527 | MS.gene023254:CDS |
| AGGCGTGGTGCAAGGATAGC+TGG | 0.400781 | 4.3:-17623367 | MS.gene023254:CDS |
| TGTTATCGCTGGGGCGTTGG+AGG | 0.403737 | 4.3:-17623451 | MS.gene023254:CDS |
| GCATCAGGATGCGGTATAAC+CGG | 0.404299 | 4.3:+17623733 | None:intergenic |
| GCTATGATTGGAAGTGCAAA+TGG | 0.413501 | 4.3:-17623919 | MS.gene023254:CDS |
| CTATTGATCTGAAGACTCAT+TGG | 0.414033 | 4.3:-17623270 | MS.gene023254:CDS |
| TCCTCAGCAGTGTTATCGCT+GGG | 0.415958 | 4.3:-17623461 | MS.gene023254:CDS |
| CTATCATCCTTCGGCTTCCT+GGG | 0.424580 | 4.3:+17623598 | None:intergenic |
| TCAAGTGCCAAAGTCTTCTT+CGG | 0.439736 | 4.3:+17623547 | None:intergenic |
| GTTCCAGTTTGTTCTTGCAC+TGG | 0.441790 | 4.3:-17623487 | MS.gene023254:CDS |
| TTCCAGTTTGTTCTTGCACT+GGG | 0.445134 | 4.3:-17623486 | MS.gene023254:CDS |
| TTCCCAGTGCAAGAACAAAC+TGG | 0.448442 | 4.3:+17623484 | None:intergenic |
| TATTGATAAACCTATGTCTC+GGG | 0.452192 | 4.3:+17623815 | None:intergenic |
| ATCTCGTGGCTGAAAGGGTA+GGG | 0.458243 | 4.3:+17623894 | None:intergenic |
| CAGTGTTATCGCTGGGGCGT+TGG | 0.461534 | 4.3:-17623454 | MS.gene023254:CDS |
| TCTGATAGTGACAAACTTGT+TGG | 0.463051 | 4.3:+17623234 | None:intergenic |
| GGGTTCATAGTAACCCCAAT+TGG | 0.466238 | 4.3:+17624026 | None:intergenic |
| ATCCTCAGCAGTGTTATCGC+TGG | 0.466509 | 4.3:-17623462 | MS.gene023254:CDS |
| TGAAGAATTGAGTGTTAAGA+AGG | 0.467743 | 4.3:-17623683 | MS.gene023254:CDS |
| ATGTGCTGAATATGCCCAAT+TGG | 0.468228 | 4.3:-17624041 | MS.gene023254:CDS |
| CTCCAAAAGCCAAGAAGCCC+AGG | 0.474778 | 4.3:-17623615 | MS.gene023254:CDS |
| GTTACTATGAACCCTTCAAA+GGG | 0.480237 | 4.3:-17624017 | MS.gene023254:CDS |
| AAGGTGGCAAAGCGAAGAAA+AGG | 0.482686 | 4.3:-17623660 | MS.gene023254:CDS |
| GGTCGTGATCCAGCTATGAT+TGG | 0.485066 | 4.3:-17623931 | MS.gene023254:CDS |
| AGGATAAATTGACACATTTG+TGG | 0.492724 | 4.3:+17623408 | None:intergenic |
| TTTGCACTTCCAATCATAGC+TGG | 0.492950 | 4.3:+17623922 | None:intergenic |
| GTGCAAGAACAAACTGGAAC+TGG | 0.493288 | 4.3:+17623490 | None:intergenic |
| AGCACAATCTCGTGGCTGAA+AGG | 0.495049 | 4.3:+17623888 | None:intergenic |
| TTATCCCTCACATAGTTAAA+CGG | 0.497017 | 4.3:+17623847 | None:intergenic |
| GGTTACTATGAACCCTTCAA+AGG | 0.497230 | 4.3:-17624018 | MS.gene023254:CDS |
| ACTTTGGCACTTGAAATCAA+TGG | 0.500357 | 4.3:-17623538 | MS.gene023254:CDS |
| CTGGGAGGAAAATGAGCAAA+GGG | 0.510464 | 4.3:-17623348 | MS.gene023254:CDS |
| GTTTCACGATCATTCATGGC+AGG | 0.511266 | 4.3:+17623970 | None:intergenic |
| GGTTCATAGTAACCCCAATT+GGG | 0.512276 | 4.3:+17624027 | None:intergenic |
| GAAACACTGCTATCATCCTT+CGG | 0.515134 | 4.3:+17623589 | None:intergenic |
| TGTGCTGAATATGCCCAATT+GGG | 0.516384 | 4.3:-17624040 | MS.gene023254:CDS |
| TATTGATCTGAAGACTCATT+GGG | 0.517362 | 4.3:-17623269 | MS.gene023254:CDS |
| TTTCTTGATGCATCAGGATG+CGG | 0.521747 | 4.3:+17623724 | None:intergenic |
| ATATTGATAAACCTATGTCT+CGG | 0.524517 | 4.3:+17623814 | None:intergenic |
| GAATTGAGTGTTAAGAAGGA+AGG | 0.526010 | 4.3:-17623679 | MS.gene023254:CDS |
| GGCGTGGTGCAAGGATAGCT+GGG | 0.537643 | 4.3:-17623366 | MS.gene023254:CDS |
| GCACAATCTCGTGGCTGAAA+GGG | 0.539826 | 4.3:+17623889 | None:intergenic |
| GAAACCACCGAAGAAGACTT+TGG | 0.547799 | 4.3:-17623554 | MS.gene023254:CDS |
| ACTGGATGACCCCGAGACAT+AGG | 0.551501 | 4.3:-17623825 | MS.gene023254:CDS |
| CAAGAAGCCCAGGAAGCCGA+AGG | 0.555978 | 4.3:-17623605 | MS.gene023254:CDS |
| AATCTCGTGGCTGAAAGGGT+AGG | 0.561235 | 4.3:+17623893 | None:intergenic |
| TTGAGTGTTAAGAAGGAAGG+TGG | 0.573084 | 4.3:-17623676 | MS.gene023254:CDS |
| TACTATGAACCCTTCAAAGG+GGG | 0.578585 | 4.3:-17624015 | MS.gene023254:CDS |
| CTATGATTGGAAGTGCAAAT+GGG | 0.579589 | 4.3:-17623918 | MS.gene023254:CDS |
| CTACTCCGTTTAACTATGTG+AGG | 0.583386 | 4.3:-17623852 | MS.gene023254:CDS |
| GCGAAGAAAAGGAAGTCTAA+GGG | 0.589646 | 4.3:-17623649 | MS.gene023254:CDS |
| AGTGCCAAAGTCTTCTTCGG+TGG | 0.589946 | 4.3:+17623550 | None:intergenic |
| ATCATAGCTGGATCACGACC+AGG | 0.593440 | 4.3:+17623934 | None:intergenic |
| GATAGCAGTGTTTCAGCTCA+AGG | 0.596315 | 4.3:-17623580 | MS.gene023254:CDS |
| ATTCAGCACATCATCATCCA+TGG | 0.603078 | 4.3:+17624053 | None:intergenic |
| AAGACTCATTGGGCTAGACA+TGG | 0.622877 | 4.3:-17623259 | MS.gene023254:CDS |
| TCTCGTGGCTGAAAGGGTAG+GGG | 0.624941 | 4.3:+17623895 | None:intergenic |
| TGCATCAAGAAATGAGAATG+TGG | 0.643643 | 4.3:-17623713 | MS.gene023254:CDS |
| TCCGAAACAGCACAATCTCG+TGG | 0.644189 | 4.3:+17623880 | None:intergenic |
| TACTCCGTTTAACTATGTGA+GGG | 0.653092 | 4.3:-17623851 | MS.gene023254:CDS |
| GCTGGGAGGAAAATGAGCAA+AGG | 0.653288 | 4.3:-17623349 | MS.gene023254:CDS |
| AGGATGCGGTATAACCGGCA+AGG | 0.654546 | 4.3:+17623738 | None:intergenic |
| GATCATTCATGGCAGGCATG+AGG | 0.655695 | 4.3:+17623977 | None:intergenic |
| ATTGATAAACCTATGTCTCG+GGG | 0.666123 | 4.3:+17623816 | None:intergenic |
| CCCCAGCGATAACACTGCTG+AGG | 0.669056 | 4.3:+17623460 | None:intergenic |
| ACTATGAACCCTTCAAAGGG+GGG | 0.673810 | 4.3:-17624014 | MS.gene023254:CDS |
| CCTCAGCAGTGTTATCGCTG+GGG | 0.675510 | 4.3:-17623460 | MS.gene023254:CDS |
| GTGCTGAATATGCCCAATTG+GGG | 0.693408 | 4.3:-17624039 | MS.gene023254:CDS |
| TTACTATGAACCCTTCAAAG+GGG | 0.698365 | 4.3:-17624016 | MS.gene023254:CDS |
| TGGGAGGAAAATGAGCAAAG+GGG | 0.723468 | 4.3:-17623347 | MS.gene023254:CDS |
| GTGGTGCAAGGATAGCTGGG+AGG | 0.770772 | 4.3:-17623363 | MS.gene023254:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATATTGATAAACCTATGTCT+CGG | + | chr4.3:17623471-17623490 | None:intergenic | 25.0% |
| ! | TGAAATCAATGGAATTGAAA+TGG | - | chr4.3:17623755-17623774 | MS.gene023254:CDS | 25.0% |
| AGGATAAATTGACACATTTG+TGG | + | chr4.3:17623877-17623896 | None:intergenic | 30.0% | |
| TATTGATAAACCTATGTCTC+GGG | + | chr4.3:17623470-17623489 | None:intergenic | 30.0% | |
| TATTGATCTGAAGACTCATT+GGG | - | chr4.3:17624013-17624032 | MS.gene023254:CDS | 30.0% | |
| TCTGAAAGAACAGCATAATT+TGG | + | chr4.3:17623507-17623526 | None:intergenic | 30.0% | |
| TGAAGAATTGAGTGTTAAGA+AGG | - | chr4.3:17623599-17623618 | MS.gene023254:CDS | 30.0% | |
| TTATCCCTCACATAGTTAAA+CGG | + | chr4.3:17623438-17623457 | None:intergenic | 30.0% | |
| !! | TTTTGTTTCACGATCATTCA+TGG | + | chr4.3:17623319-17623338 | None:intergenic | 30.0% |
| !!! | GAAACAAAACCATTTTTTCC+TGG | - | chr4.3:17623330-17623349 | MS.gene023254:CDS | 30.0% |
| ACTTTGGCACTTGAAATCAA+TGG | - | chr4.3:17623744-17623763 | MS.gene023254:CDS | 35.0% | |
| ATTGATAAACCTATGTCTCG+GGG | + | chr4.3:17623469-17623488 | None:intergenic | 35.0% | |
| CTATTGATCTGAAGACTCAT+TGG | - | chr4.3:17624012-17624031 | MS.gene023254:CDS | 35.0% | |
| GAATTGAGTGTTAAGAAGGA+AGG | - | chr4.3:17623603-17623622 | MS.gene023254:CDS | 35.0% | |
| GGAATTGAAATGGACATTTC+TGG | - | chr4.3:17623765-17623784 | MS.gene023254:CDS | 35.0% | |
| GTTACTATGAACCCTTCAAA+GGG | - | chr4.3:17623265-17623284 | MS.gene023254:CDS | 35.0% | |
| TACTCCGTTTAACTATGTGA+GGG | - | chr4.3:17623431-17623450 | MS.gene023254:CDS | 35.0% | |
| TGCATCAAGAAATGAGAATG+TGG | - | chr4.3:17623569-17623588 | MS.gene023254:CDS | 35.0% | |
| TTAACTATGTGAGGGATAAC+TGG | - | chr4.3:17623439-17623458 | MS.gene023254:CDS | 35.0% | |
| TTACTATGAACCCTTCAAAG+GGG | - | chr4.3:17623266-17623285 | MS.gene023254:CDS | 35.0% | |
| TTCTCATTTCTTGATGCATC+AGG | + | chr4.3:17623567-17623586 | None:intergenic | 35.0% | |
| ! | CTATGATTGGAAGTGCAAAT+GGG | - | chr4.3:17623364-17623383 | MS.gene023254:CDS | 35.0% |
| ! | TCTGATAGTGACAAACTTGT+TGG | + | chr4.3:17624051-17624070 | None:intergenic | 35.0% |
| AGCGAAGAAAAGGAAGTCTA+AGG | - | chr4.3:17623632-17623651 | MS.gene023254:CDS | 40.0% | |
| ATGTGCTGAATATGCCCAAT+TGG | - | chr4.3:17623241-17623260 | MS.gene023254:CDS | 40.0% | |
| CTACTCCGTTTAACTATGTG+AGG | - | chr4.3:17623430-17623449 | MS.gene023254:CDS | 40.0% | |
| CTTTGCCGATGAGCATAAAA+AGG | - | chr4.3:17623895-17623914 | MS.gene023254:CDS | 40.0% | |
| GAAACACTGCTATCATCCTT+CGG | + | chr4.3:17623696-17623715 | None:intergenic | 40.0% | |
| GCGAAGAAAAGGAAGTCTAA+GGG | - | chr4.3:17623633-17623652 | MS.gene023254:CDS | 40.0% | |
| GGTTACTATGAACCCTTCAA+AGG | - | chr4.3:17623264-17623283 | MS.gene023254:CDS | 40.0% | |
| GGTTCATAGTAACCCCAATT+GGG | + | chr4.3:17623258-17623277 | None:intergenic | 40.0% | |
| TACTATGAACCCTTCAAAGG+GGG | - | chr4.3:17623267-17623286 | MS.gene023254:CDS | 40.0% | |
| TCAAGTGCCAAAGTCTTCTT+CGG | + | chr4.3:17623738-17623757 | None:intergenic | 40.0% | |
| TGTGCTGAATATGCCCAATT+GGG | - | chr4.3:17623242-17623261 | MS.gene023254:CDS | 40.0% | |
| TTGAGTGTTAAGAAGGAAGG+TGG | - | chr4.3:17623606-17623625 | MS.gene023254:CDS | 40.0% | |
| TTTCTTGATGCATCAGGATG+CGG | + | chr4.3:17623561-17623580 | None:intergenic | 40.0% | |
| TTTGCACTTCCAATCATAGC+TGG | + | chr4.3:17623363-17623382 | None:intergenic | 40.0% | |
| ! | CTTTTTATGCTCATCGGCAA+AGG | + | chr4.3:17623897-17623916 | None:intergenic | 40.0% |
| ! | GCTATGATTGGAAGTGCAAA+TGG | - | chr4.3:17623363-17623382 | MS.gene023254:CDS | 40.0% |
| ! | TTCCAGTTTGTTCTTGCACT+GGG | - | chr4.3:17623796-17623815 | MS.gene023254:CDS | 40.0% |
| AAGGTGGCAAAGCGAAGAAA+AGG | - | chr4.3:17623622-17623641 | MS.gene023254:CDS | 45.0% | |
| ACTATGAACCCTTCAAAGGG+GGG | - | chr4.3:17623268-17623287 | MS.gene023254:CDS | 45.0% | |
| ATCACAATCACTCTCCTTGC+CGG | - | chr4.3:17623530-17623549 | MS.gene023254:CDS | 45.0% | |
| CTGGGAGGAAAATGAGCAAA+GGG | - | chr4.3:17623934-17623953 | MS.gene023254:CDS | 45.0% | |
| GAAACCACCGAAGAAGACTT+TGG | - | chr4.3:17623728-17623747 | MS.gene023254:CDS | 45.0% | |
| GATAGCAGTGTTTCAGCTCA+AGG | - | chr4.3:17623702-17623721 | MS.gene023254:CDS | 45.0% | |
| GGATCACGACCAGGAAAAAA+TGG | + | chr4.3:17623342-17623361 | None:intergenic | 45.0% | |
| GGGTTCATAGTAACCCCAAT+TGG | + | chr4.3:17623259-17623278 | None:intergenic | 45.0% | |
| GTGCAAGAACAAACTGGAAC+TGG | + | chr4.3:17623795-17623814 | None:intergenic | 45.0% | |
| GTGCTGAATATGCCCAATTG+GGG | - | chr4.3:17623243-17623262 | MS.gene023254:CDS | 45.0% | |
| GTTTCACGATCATTCATGGC+AGG | + | chr4.3:17623315-17623334 | None:intergenic | 45.0% | |
| TGGGAGGAAAATGAGCAAAG+GGG | - | chr4.3:17623935-17623954 | MS.gene023254:CDS | 45.0% | |
| TTCCCAGTGCAAGAACAAAC+TGG | + | chr4.3:17623801-17623820 | None:intergenic | 45.0% | |
| ! | AAGACTCATTGGGCTAGACA+TGG | - | chr4.3:17624023-17624042 | MS.gene023254:CDS | 45.0% |
| ! | CCACGCCTTTTTATGCTCAT+CGG | + | chr4.3:17623903-17623922 | None:intergenic | 45.0% |
| ! | CTTCAGCAGCAAGTTTTTCC+AGG | + | chr4.3:17623974-17623993 | None:intergenic | 45.0% |
| ! | GTTCCAGTTTGTTCTTGCAC+TGG | - | chr4.3:17623795-17623814 | MS.gene023254:CDS | 45.0% |
| !! | CTGGAAAAACTTGCTGCTGA+AGG | - | chr4.3:17623972-17623991 | MS.gene023254:CDS | 45.0% |
| !! | GAGCAAAGGGGCTTTTAAGA+AGG | - | chr4.3:17623947-17623966 | MS.gene023254:CDS | 45.0% |
| AATCTCGTGGCTGAAAGGGT+AGG | + | chr4.3:17623392-17623411 | None:intergenic | 50.0% | |
| AGCACAATCTCGTGGCTGAA+AGG | + | chr4.3:17623397-17623416 | None:intergenic | 50.0% | |
| AGTGCCAAAGTCTTCTTCGG+TGG | + | chr4.3:17623735-17623754 | None:intergenic | 50.0% | |
| ATCATAGCTGGATCACGACC+AGG | + | chr4.3:17623351-17623370 | None:intergenic | 50.0% | |
| ATCCTCAGCAGTGTTATCGC+TGG | - | chr4.3:17623820-17623839 | MS.gene023254:CDS | 50.0% | |
| ATCTCGTGGCTGAAAGGGTA+GGG | + | chr4.3:17623391-17623410 | None:intergenic | 50.0% | |
| CCGATGAGCATAAAAAGGCG+TGG | - | chr4.3:17623900-17623919 | MS.gene023254:CDS | 50.0% | |
| CTATCATCCTTCGGCTTCCT+GGG | + | chr4.3:17623687-17623706 | None:intergenic | 50.0% | |
| GATCATTCATGGCAGGCATG+AGG | + | chr4.3:17623308-17623327 | None:intergenic | 50.0% | |
| GCACAATCTCGTGGCTGAAA+GGG | + | chr4.3:17623396-17623415 | None:intergenic | 50.0% | |
| GCATCAGGATGCGGTATAAC+CGG | + | chr4.3:17623552-17623571 | None:intergenic | 50.0% | |
| GCTGGGAGGAAAATGAGCAA+AGG | - | chr4.3:17623933-17623952 | MS.gene023254:CDS | 50.0% | |
| GGTCGTGATCCAGCTATGAT+TGG | - | chr4.3:17623351-17623370 | MS.gene023254:CDS | 50.0% | |
| TCCGAAACAGCACAATCTCG+TGG | + | chr4.3:17623405-17623424 | None:intergenic | 50.0% | |
| TCCTCAGCAGTGTTATCGCT+GGG | - | chr4.3:17623821-17623840 | MS.gene023254:CDS | 50.0% | |
| ! | GCATAAAAAGGCGTGGTGCA+AGG | - | chr4.3:17623907-17623926 | MS.gene023254:CDS | 50.0% |
| !! | AGGGGCTTTTAAGAAGGTCC+TGG | - | chr4.3:17623953-17623972 | MS.gene023254:CDS | 50.0% |
| !! | GCCACGAGATTGTGCTGTTT+CGG | - | chr4.3:17623401-17623420 | MS.gene023254:CDS | 50.0% |
| !! | TTCCTGGGCTTCTTGGCTTT+TGG | + | chr4.3:17623672-17623691 | None:intergenic | 50.0% |
| ACCGAGATTCCCCCCTTTGA+AGG | + | chr4.3:17623280-17623299 | None:intergenic | 55.0% | |
| ACTGGATGACCCCGAGACAT+AGG | - | chr4.3:17623457-17623476 | MS.gene023254:CDS | 55.0% | |
| AGGATGCGGTATAACCGGCA+AGG | + | chr4.3:17623547-17623566 | None:intergenic | 55.0% | |
| CCCTTCAAAGGGGGGAATCT+CGG | - | chr4.3:17623276-17623295 | MS.gene023254:CDS | 55.0% | |
| CCGAGATTCCCCCCTTTGAA+GGG | + | chr4.3:17623279-17623298 | None:intergenic | 55.0% | |
| CCTCAGCAGTGTTATCGCTG+GGG | - | chr4.3:17623822-17623841 | MS.gene023254:CDS | 55.0% | |
| CTCCAAAAGCCAAGAAGCCC+AGG | - | chr4.3:17623667-17623686 | MS.gene023254:CDS | 55.0% | |
| GCTATCATCCTTCGGCTTCC+TGG | + | chr4.3:17623688-17623707 | None:intergenic | 55.0% | |
| TCTCGTGGCTGAAAGGGTAG+GGG | + | chr4.3:17623390-17623409 | None:intergenic | 55.0% | |
| !! | GGGCTTCTTGGCTTTTGGAG+TGG | + | chr4.3:17623667-17623686 | None:intergenic | 55.0% |
| AGGCGTGGTGCAAGGATAGC+TGG | - | chr4.3:17623915-17623934 | MS.gene023254:CDS | 60.0% | |
| CAAGAAGCCCAGGAAGCCGA+AGG | - | chr4.3:17623677-17623696 | MS.gene023254:CDS | 60.0% | |
| CAGTGTTATCGCTGGGGCGT+TGG | - | chr4.3:17623828-17623847 | MS.gene023254:CDS | 60.0% | |
| CCCCAGCGATAACACTGCTG+AGG | + | chr4.3:17623825-17623844 | None:intergenic | 60.0% | |
| CTTCGGCTTCCTGGGCTTCT+TGG | + | chr4.3:17623679-17623698 | None:intergenic | 60.0% | |
| GGCGTGGTGCAAGGATAGCT+GGG | - | chr4.3:17623916-17623935 | MS.gene023254:CDS | 60.0% | |
| GTGGTGCAAGGATAGCTGGG+AGG | - | chr4.3:17623919-17623938 | MS.gene023254:CDS | 60.0% | |
| !! | TGTTATCGCTGGGGCGTTGG+AGG | - | chr4.3:17623831-17623850 | MS.gene023254:CDS | 60.0% |
| !! | ATCGCTGGGGCGTTGGAGGC+TGG | - | chr4.3:17623835-17623854 | MS.gene023254:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 17623231 | 17624073 | 17623231 | ID=MS.gene023254 |
| chr4.3 | mRNA | 17623231 | 17624073 | 17623231 | ID=MS.gene023254.t1;Parent=MS.gene023254 |
| chr4.3 | exon | 17623231 | 17624073 | 17623231 | ID=MS.gene023254.t1.exon1;Parent=MS.gene023254.t1 |
| chr4.3 | CDS | 17623231 | 17624073 | 17623231 | ID=cds.MS.gene023254.t1;Parent=MS.gene023254.t1 |
| Gene Sequence |
| Protein sequence |
