AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023326

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023326.t1 MTR_7g015010 71.622 74 21 0 52 125 47 120 1.70e-29 119
MS.gene023326.t1 MTR_4g109660 69.863 73 22 0 52 124 46 118 2.93e-28 114
MS.gene023326.t1 MTR_6g015350 72.222 72 20 0 52 123 39 110 7.25e-28 114
MS.gene023326.t1 MTR_3g026050 65.278 72 25 0 52 123 47 118 6.16e-26 109
MS.gene023326.t1 MTR_4g079580 70.588 68 20 0 56 123 16 83 2.58e-25 106
MS.gene023326.t1 MTR_2g090960 72.059 68 19 0 56 123 18 85 2.81e-25 106
MS.gene023326.t1 MTR_2g078200 60.526 76 27 1 56 128 14 89 2.39e-22 97.4
MS.gene023326.t1 MTR_6g017055 39.744 156 72 4 63 208 127 270 1.14e-20 94.4
MS.gene023326.t1 MTR_4g111935 39.744 156 80 6 58 213 128 269 1.88e-19 90.5
MS.gene023326.t1 MTR_1g103380 56.061 66 29 0 61 126 200 265 3.48e-16 81.3
MS.gene023326.t1 MTR_7g018500 59.649 57 23 0 64 120 122 178 8.25e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023326.t1 AT4G18390 41.342 462 130 19 41 478 21 365 8.17e-74 237
MS.gene023326.t1 AT4G18390 41.342 462 130 19 41 478 21 365 8.17e-74 237
MS.gene023326.t1 AT1G30210 46.275 255 76 8 35 289 25 218 1.32e-48 170
MS.gene023326.t1 AT1G30210 46.275 255 76 8 35 289 25 218 1.32e-48 170
MS.gene023326.t1 AT3G02150 75.000 72 18 0 52 123 64 135 3.60e-30 119
MS.gene023326.t1 AT3G02150 75.000 72 18 0 52 123 64 135 1.20e-29 119
MS.gene023326.t1 AT5G60970 68.056 72 23 0 52 123 53 124 4.80e-28 115
MS.gene023326.t1 AT5G08070 66.667 72 24 0 52 123 23 94 7.41e-27 108
MS.gene023326.t1 AT5G08070 66.667 72 24 0 52 123 23 94 7.41e-27 108
MS.gene023326.t1 AT2G31070 75.385 65 16 0 56 120 23 87 2.04e-25 107
MS.gene023326.t1 AT1G53230 54.639 97 30 2 31 124 29 114 9.20e-25 106
MS.gene023326.t1 AT1G53230 54.639 97 30 2 31 124 29 114 9.20e-25 106
MS.gene023326.t1 AT3G15030 66.667 72 21 1 56 124 39 110 6.15e-24 104
MS.gene023326.t1 AT3G15030 66.667 72 21 1 56 124 39 110 6.15e-24 104
MS.gene023326.t1 AT3G15030 66.667 72 21 1 56 124 39 110 6.15e-24 104
MS.gene023326.t1 AT3G15030 66.667 72 21 1 56 124 39 110 6.15e-24 104
MS.gene023326.t1 AT1G67260 55.556 63 28 0 63 125 88 150 2.43e-17 83.6
MS.gene023326.t1 AT1G67260 55.556 63 28 0 63 125 88 150 2.43e-17 83.6
MS.gene023326.t1 AT1G67260 55.556 63 28 0 63 125 88 150 3.01e-17 83.6
MS.gene023326.t1 AT1G68800 45.070 71 39 0 50 120 100 170 1.37e-14 75.5
MS.gene023326.t1 AT1G68800 45.070 71 39 0 50 120 100 170 1.44e-14 75.5
MS.gene023326.t1 AT3G18550 29.747 158 107 2 54 207 140 297 1.48e-13 72.8
MS.gene023326.t1 AT3G18550 31.707 164 100 5 54 207 140 301 3.78e-13 71.6
MS.gene023326.t1 AT3G18550 31.707 164 100 5 54 207 140 301 3.78e-13 71.6
MS.gene023326.t1 AT3G18550 44.776 67 37 0 54 120 140 206 5.42e-13 71.2

Find 79 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGGCCTTGCTGGTTATAAT+AGG 0.198318 4.2:+15528772 MS.gene023326:CDS
ATCATTCTTCAAGAATTATA+AGG 0.232662 4.2:+15527773 MS.gene023326:CDS
AATCTTTCTTTGTCTAAATC+TGG 0.297789 4.2:+15528123 MS.gene023326:CDS
CAAAGGGTTTAAGAGATAGA+AGG 0.305323 4.2:+15527845 MS.gene023326:CDS
ATAAGGGTTTCAAGAGCTTC+TGG 0.308884 4.2:+15527790 MS.gene023326:CDS
TGATCTGGTATGAATGAAAA+TGG 0.312077 4.2:-15528666 None:intergenic
GCACATCATCATCATCTATT+AGG 0.320825 4.2:+15528528 MS.gene023326:CDS
ACAATCTCTTCGGGCCTTGC+TGG 0.321697 4.2:+15528762 MS.gene023326:CDS
CTGAATTTCACAATCTCTTC+GGG 0.336767 4.2:+15528753 MS.gene023326:CDS
AACTCTTGGGAATTTATGTT+GGG 0.338800 4.2:-15527653 None:intergenic
CAACTCTTGGGAATTTATGT+TGG 0.340066 4.2:-15527654 None:intergenic
TACTTTAGTCCAATGTTTCC+AGG 0.350694 4.2:+15528489 MS.gene023326:CDS
ATCATTAGAAGAGGTGGAGG+AGG 0.362000 4.2:+15527706 MS.gene023326:CDS
CTTGGCTGATTATTATTACT+AGG 0.375750 4.2:-15528027 None:intergenic
ATGAAAGCACAAATCTTAAC+AGG 0.378339 4.2:+15527734 MS.gene023326:CDS
GGTTCTTCAGCTGACCCTCT+TGG 0.378386 4.2:-15528399 None:intergenic
GGGCCTTGCTGGTTATAATA+GGG 0.382791 4.2:+15528773 MS.gene023326:CDS
AACCATTCAACAGCTTTACT+TGG 0.387306 4.2:-15527934 None:intergenic
AGACAAAAGAGACGGTGAAT+TGG 0.387420 4.2:-15528808 None:intergenic
TCATTCTTCAAGAATTATAA+GGG 0.401881 4.2:+15527774 MS.gene023326:CDS
ATCTTAACAGGTTCAATAGT+TGG 0.402776 4.2:+15527746 MS.gene023326:CDS
TCTGAATTTCACAATCTCTT+CGG 0.406508 4.2:+15528752 MS.gene023326:CDS
CTCAACAACTCATTATTCTC+TGG 0.418248 4.2:+15527997 MS.gene023326:CDS
TGACCCTCTTGGACTATTTG+TGG 0.423757 4.2:-15528388 None:intergenic
TCTGAGACAAGTAAAGGTTC+TGG 0.423833 4.2:+15528159 MS.gene023326:CDS
AAAACTGATGGTGTTGAATC+TGG 0.424465 4.2:-15528980 None:intergenic
GAGATCATTAGAAGAGGTGG+AGG 0.430301 4.2:+15527703 MS.gene023326:CDS
GAGCTTCTGGTGGAAAAGAT+AGG 0.444208 4.2:+15527803 MS.gene023326:CDS
AGAGAGATCATTAGAAGAGG+TGG 0.446541 4.2:+15527700 MS.gene023326:CDS
GCTCTTGATGAAGAAGATCC+TGG 0.452930 4.2:-15528507 None:intergenic
CTCTTTCTCTAGCTTTGACA+CGG 0.453585 4.2:-15528215 None:intergenic
TTCGGTTCATGATGCTGAAA+TGG 0.457200 4.2:+15528065 MS.gene023326:CDS
TGATGATTATTCTCCATTGT+AGG 0.461933 4.2:-15528945 None:intergenic
GAATGAAGCTGTTTGAGAAA+TGG 0.464042 4.2:-15528325 None:intergenic
GTTTAAGAGATAGAAGGGTT+AGG 0.467094 4.2:+15527851 MS.gene023326:CDS
AGTAAAGTAATGACTTCAAA+GGG 0.486371 4.2:+15527829 MS.gene023326:CDS
TTCACTGAACTACTTACTTG+TGG 0.489069 4.2:+15528345 MS.gene023326:CDS
AAGTGAACAAGGTGTTGATT+CGG 0.495908 4.2:+15528047 MS.gene023326:CDS
GAAGAAGATCCTGGAAACAT+TGG 0.496215 4.2:-15528498 None:intergenic
ATTCAACAGCTTTACTTGGT+TGG 0.503152 4.2:-15527930 None:intergenic
ATGGAATTCTTCAGCACCAA+TGG 0.510387 4.2:+15528461 MS.gene023326:CDS
GCTGAAGGTGAAGCTGAAGC+AGG 0.512953 4.2:-15528918 None:intergenic
GAATCAACACCTTGTTCACT+TGG 0.514307 4.2:-15528045 None:intergenic
ACCTTCAGCTGCTCCTACAA+TGG 0.515548 4.2:+15528932 MS.gene023326:CDS
CAGCTCTATTCAGATCAGAA+AGG 0.516369 4.2:+15529029 MS.gene023326:CDS
TAATCATTGTTGTTCCCGCT+TGG 0.517589 4.2:-15528726 None:intergenic
AGCTCTATTCAGATCAGAAA+GGG 0.521442 4.2:+15529030 MS.gene023326:CDS
AAAGGGTTTAAGAGATAGAA+GGG 0.523321 4.2:+15527846 MS.gene023326:CDS
GGACTAAAGTAATGATCCAT+TGG 0.525062 4.2:-15528477 None:intergenic
AATAATGAGTTGTTGAGTGA+AGG 0.525467 4.2:-15527991 None:intergenic
GAAAATGAAGAAGAAAATCA+TGG 0.536388 4.2:+15527676 MS.gene023326:CDS
GCTGAAATGGTTGTTGAGAA+TGG 0.538563 4.2:+15528078 MS.gene023326:CDS
TAGTAAAGTAATGACTTCAA+AGG 0.544163 4.2:+15527828 MS.gene023326:CDS
TTCTCACCACTAGTACTGAA+TGG 0.555766 4.2:-15528600 None:intergenic
AACCAAGTAAAGCTGTTGAA+TGG 0.558567 4.2:+15527932 MS.gene023326:CDS
TCAAAGCTAGAGAAAGAGCA+AGG 0.568563 4.2:+15528220 MS.gene023326:CDS
GGCCTTGCTGGTTATAATAG+GGG 0.569734 4.2:+15528774 MS.gene023326:CDS
AATAATCAGCCAAGTGAACA+AGG 0.578757 4.2:+15528036 MS.gene023326:CDS
GTTTCACCATTCAGTACTAG+TGG 0.581208 4.2:+15528594 MS.gene023326:CDS
AGATTGTTGGATCCATCTAA+AGG 0.583522 4.2:-15528855 None:intergenic
AGCACTTCTGAGACAAGTAA+AGG 0.584944 4.2:+15528153 MS.gene023326:CDS
CTTCTTCTACTCAACCAAGC+GGG 0.586398 4.2:+15528712 MS.gene023326:CDS
TATGATCTTCAAGATAGACT+TGG 0.589871 4.2:+15527901 MS.gene023326:CDS
GGAAAGAACTGCTAAAGAGA+AGG 0.598537 4.2:+15528242 MS.gene023326:CDS
GAGACGGTGAATTGGACTGA+AGG 0.599533 4.2:-15528800 None:intergenic
GACAACAGCAGCAGCAACAA+TGG 0.601712 4.2:+15528442 MS.gene023326:CDS
GCATGATTGTGGTATGGAGG+AGG 0.610814 4.2:+15527618 None:intergenic
AGATCATATGATGCAAAATG+TGG 0.615631 4.2:+15528683 MS.gene023326:CDS
CAAAGCTAGAGAAAGAGCAA+GGG 0.619608 4.2:+15528221 MS.gene023326:CDS
GGAAGAGAGATCATTAGAAG+AGG 0.619686 4.2:+15527697 MS.gene023326:CDS
AGGGTTTCAAGAGCTTCTGG+TGG 0.620264 4.2:+15527793 MS.gene023326:CDS
AGACGGTGAATTGGACTGAA+GGG 0.624249 4.2:-15528799 None:intergenic
GCCTTGCTGGTTATAATAGG+GGG 0.632630 4.2:+15528775 MS.gene023326:CDS
TCCATTGTAGGAGCAGCTGA+AGG 0.640995 4.2:-15528933 None:intergenic
TGAAGATGAGACAAAAGAGA+CGG 0.658703 4.2:-15528816 None:intergenic
GATGGTGTTGAATCTGGTGA+TGG 0.659814 4.2:-15528974 None:intergenic
ACTACCACAAATAGTCCAAG+AGG 0.670044 4.2:+15528384 MS.gene023326:CDS
TCTTCTTCTACTCAACCAAG+CGG 0.675315 4.2:+15528711 MS.gene023326:CDS
CTACCACAAATAGTCCAAGA+GGG 0.751118 4.2:+15528385 MS.gene023326:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTCTTCAAGAATTATA+AGG + chr4.2:15527773-15527792 MS.gene023326:CDS 20.0%
!! TCATTCTTCAAGAATTATAA+GGG + chr4.2:15527774-15527793 MS.gene023326:CDS 20.0%
! AATCTTTCTTTGTCTAAATC+TGG + chr4.2:15528123-15528142 MS.gene023326:CDS 25.0%
! AGTAAAGTAATGACTTCAAA+GGG + chr4.2:15527829-15527848 MS.gene023326:CDS 25.0%
! GAAAATGAAGAAGAAAATCA+TGG + chr4.2:15527676-15527695 MS.gene023326:CDS 25.0%
! TAGTAAAGTAATGACTTCAA+AGG + chr4.2:15527828-15527847 MS.gene023326:CDS 25.0%
!!! AACAATCTACCTTTTTTCAT+GGG + chr4.2:15528870-15528889 MS.gene023326:CDS 25.0%
AAAGGGTTTAAGAGATAGAA+GGG + chr4.2:15527846-15527865 MS.gene023326:CDS 30.0%
AACTCTTGGGAATTTATGTT+GGG - chr4.2:15527656-15527675 None:intergenic 30.0%
AATAATGAGTTGTTGAGTGA+AGG - chr4.2:15527994-15528013 None:intergenic 30.0%
AGATCATATGATGCAAAATG+TGG + chr4.2:15528683-15528702 MS.gene023326:CDS 30.0%
ATCTTAACAGGTTCAATAGT+TGG + chr4.2:15527746-15527765 MS.gene023326:CDS 30.0%
CAAAAACAGATGAAAACTGA+TGG - chr4.2:15528995-15529014 None:intergenic 30.0%
CATGAAAAAAGGTAGATTGT+TGG - chr4.2:15528871-15528890 None:intergenic 30.0%
CTTGGCTGATTATTATTACT+AGG - chr4.2:15528030-15528049 None:intergenic 30.0%
TATGATCTTCAAGATAGACT+TGG + chr4.2:15527901-15527920 MS.gene023326:CDS 30.0%
TCTGAATTTCACAATCTCTT+CGG + chr4.2:15528752-15528771 MS.gene023326:CDS 30.0%
TGATCTGGTATGAATGAAAA+TGG - chr4.2:15528669-15528688 None:intergenic 30.0%
TGATGATTATTCTCCATTGT+AGG - chr4.2:15528948-15528967 None:intergenic 30.0%
! ACATTTTGCATCATATGATC+TGG - chr4.2:15528684-15528703 None:intergenic 30.0%
! ATGAAAGCACAAATCTTAAC+AGG + chr4.2:15527734-15527753 MS.gene023326:CDS 30.0%
! CTTCTTCATTTTCAACTCTT+GGG - chr4.2:15527669-15527688 None:intergenic 30.0%
! TCTTCTTCATTTTCAACTCT+TGG - chr4.2:15527670-15527689 None:intergenic 30.0%
! TTTTCAGTTTCACCTTTAGA+TGG + chr4.2:15528843-15528862 MS.gene023326:CDS 30.0%
!! CTAGCTTTGTTAAAAAAGCT+AGG - chr4.2:15528423-15528442 None:intergenic 30.0%
!!! CAACAATCTACCTTTTTTCA+TGG + chr4.2:15528869-15528888 MS.gene023326:CDS 30.0%
!!! CAGTTTTCATCTGTTTTTGA+TGG + chr4.2:15528996-15529015 MS.gene023326:CDS 30.0%
AACCAAGTAAAGCTGTTGAA+TGG + chr4.2:15527932-15527951 MS.gene023326:CDS 35.0%
AACCATTCAACAGCTTTACT+TGG - chr4.2:15527937-15527956 None:intergenic 35.0%
AATAATCAGCCAAGTGAACA+AGG + chr4.2:15528036-15528055 MS.gene023326:CDS 35.0%
AGATTGTTGGATCCATCTAA+AGG - chr4.2:15528858-15528877 None:intergenic 35.0%
AGCTCTATTCAGATCAGAAA+GGG + chr4.2:15529030-15529049 MS.gene023326:CDS 35.0%
ATTCAACAGCTTTACTTGGT+TGG - chr4.2:15527933-15527952 None:intergenic 35.0%
CAAAGGGTTTAAGAGATAGA+AGG + chr4.2:15527845-15527864 MS.gene023326:CDS 35.0%
CAACTCTTGGGAATTTATGT+TGG - chr4.2:15527657-15527676 None:intergenic 35.0%
CTCAACAACTCATTATTCTC+TGG + chr4.2:15527997-15528016 MS.gene023326:CDS 35.0%
CTGAATTTCACAATCTCTTC+GGG + chr4.2:15528753-15528772 MS.gene023326:CDS 35.0%
GAATGAAGCTGTTTGAGAAA+TGG - chr4.2:15528328-15528347 None:intergenic 35.0%
GCACATCATCATCATCTATT+AGG + chr4.2:15528528-15528547 MS.gene023326:CDS 35.0%
GGACTAAAGTAATGATCCAT+TGG - chr4.2:15528480-15528499 None:intergenic 35.0%
GTTTAAGAGATAGAAGGGTT+AGG + chr4.2:15527851-15527870 MS.gene023326:CDS 35.0%
TACTTTAGTCCAATGTTTCC+AGG + chr4.2:15528489-15528508 MS.gene023326:CDS 35.0%
TGAAGATGAGACAAAAGAGA+CGG - chr4.2:15528819-15528838 None:intergenic 35.0%
TTCACTGAACTACTTACTTG+TGG + chr4.2:15528345-15528364 MS.gene023326:CDS 35.0%
! AAAACTGATGGTGTTGAATC+TGG - chr4.2:15528983-15529002 None:intergenic 35.0%
! CTCTTTTGTCTCATCTTCAA+AGG + chr4.2:15528820-15528839 MS.gene023326:CDS 35.0%
!! AAGTGAACAAGGTGTTGATT+CGG + chr4.2:15528047-15528066 MS.gene023326:CDS 35.0%
!!! AATCTACCTTTTTTCATGGG+AGG + chr4.2:15528873-15528892 MS.gene023326:CDS 35.0%
ACTACCACAAATAGTCCAAG+AGG + chr4.2:15528384-15528403 MS.gene023326:CDS 40.0%
AGACAAAAGAGACGGTGAAT+TGG - chr4.2:15528811-15528830 None:intergenic 40.0%
AGAGAGATCATTAGAAGAGG+TGG + chr4.2:15527700-15527719 MS.gene023326:CDS 40.0%
ATAAGGGTTTCAAGAGCTTC+TGG + chr4.2:15527790-15527809 MS.gene023326:CDS 40.0%
ATGGAATTCTTCAGCACCAA+TGG + chr4.2:15528461-15528480 MS.gene023326:CDS 40.0%
CAAAGCTAGAGAAAGAGCAA+GGG + chr4.2:15528221-15528240 MS.gene023326:CDS 40.0%
CAGCTCTATTCAGATCAGAA+AGG + chr4.2:15529029-15529048 MS.gene023326:CDS 40.0%
CTACCACAAATAGTCCAAGA+GGG + chr4.2:15528385-15528404 MS.gene023326:CDS 40.0%
GAAGAAGATCCTGGAAACAT+TGG - chr4.2:15528501-15528520 None:intergenic 40.0%
GAATCAACACCTTGTTCACT+TGG - chr4.2:15528048-15528067 None:intergenic 40.0%
GCTGAAATGGTTGTTGAGAA+TGG + chr4.2:15528078-15528097 MS.gene023326:CDS 40.0%
GGAAAGAACTGCTAAAGAGA+AGG + chr4.2:15528242-15528261 MS.gene023326:CDS 40.0%
GGAAGAGAGATCATTAGAAG+AGG + chr4.2:15527697-15527716 MS.gene023326:CDS 40.0%
GTTTCACCATTCAGTACTAG+TGG + chr4.2:15528594-15528613 MS.gene023326:CDS 40.0%
TCAAAGCTAGAGAAAGAGCA+AGG + chr4.2:15528220-15528239 MS.gene023326:CDS 40.0%
TCTTCTTCTACTCAACCAAG+CGG + chr4.2:15528711-15528730 MS.gene023326:CDS 40.0%
TTCGGTTCATGATGCTGAAA+TGG + chr4.2:15528065-15528084 MS.gene023326:CDS 40.0%
! TAATCATTGTTGTTCCCGCT+TGG - chr4.2:15528729-15528748 None:intergenic 40.0%
! TCTGAGACAAGTAAAGGTTC+TGG + chr4.2:15528159-15528178 MS.gene023326:CDS 40.0%
! TTCTCACCACTAGTACTGAA+TGG - chr4.2:15528603-15528622 None:intergenic 40.0%
!! AGCACTTCTGAGACAAGTAA+AGG + chr4.2:15528153-15528172 MS.gene023326:CDS 40.0%
!! CTCTTTCTCTAGCTTTGACA+CGG - chr4.2:15528218-15528237 None:intergenic 40.0%
AGACGGTGAATTGGACTGAA+GGG - chr4.2:15528802-15528821 None:intergenic 45.0%
ATCATTAGAAGAGGTGGAGG+AGG + chr4.2:15527706-15527725 MS.gene023326:CDS 45.0%
CTTCTTCTACTCAACCAAGC+GGG + chr4.2:15528712-15528731 MS.gene023326:CDS 45.0%
GAGATCATTAGAAGAGGTGG+AGG + chr4.2:15527703-15527722 MS.gene023326:CDS 45.0%
GAGCTTCTGGTGGAAAAGAT+AGG + chr4.2:15527803-15527822 MS.gene023326:CDS 45.0%
GCTCTTGATGAAGAAGATCC+TGG - chr4.2:15528510-15528529 None:intergenic 45.0%
TCCCCCTATTATAACCAGCA+AGG - chr4.2:15528779-15528798 None:intergenic 45.0%
TGACCCTCTTGGACTATTTG+TGG - chr4.2:15528391-15528410 None:intergenic 45.0%
! GATGGTGTTGAATCTGGTGA+TGG - chr4.2:15528977-15528996 None:intergenic 45.0%
! GCCTTGCTGGTTATAATAGG+GGG + chr4.2:15528775-15528794 MS.gene023326:CDS 45.0%
! GGCCTTGCTGGTTATAATAG+GGG + chr4.2:15528774-15528793 MS.gene023326:CDS 45.0%
! GGGCCTTGCTGGTTATAATA+GGG + chr4.2:15528773-15528792 MS.gene023326:CDS 45.0%
!!! CTACCTTTTTTCATGGGAGG+AGG + chr4.2:15528876-15528895 MS.gene023326:CDS 45.0%
ACCTTCAGCTGCTCCTACAA+TGG + chr4.2:15528932-15528951 MS.gene023326:CDS 50.0%
AGGGTTTCAAGAGCTTCTGG+TGG + chr4.2:15527793-15527812 MS.gene023326:CDS 50.0%
GACAACAGCAGCAGCAACAA+TGG + chr4.2:15528442-15528461 MS.gene023326:CDS 50.0%
GAGACGGTGAATTGGACTGA+AGG - chr4.2:15528803-15528822 None:intergenic 50.0%
GCACCTCCTCCCATGAAAAA+AGG - chr4.2:15528882-15528901 None:intergenic 50.0%
TCCATTGTAGGAGCAGCTGA+AGG - chr4.2:15528936-15528955 None:intergenic 50.0%
! CGGGCCTTGCTGGTTATAAT+AGG + chr4.2:15528772-15528791 MS.gene023326:CDS 50.0%
ACAATCTCTTCGGGCCTTGC+TGG + chr4.2:15528762-15528781 MS.gene023326:CDS 55.0%
GCTGAAGGTGAAGCTGAAGC+AGG - chr4.2:15528921-15528940 None:intergenic 55.0%
GGTTCTTCAGCTGACCCTCT+TGG - chr4.2:15528402-15528421 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 15527631 15529067 15527631 ID=MS.gene023326
chr4.2 mRNA 15527631 15529067 15527631 ID=MS.gene023326.t1;Parent=MS.gene023326
chr4.2 exon 15527631 15529067 15527631 ID=MS.gene023326.t1.exon1;Parent=MS.gene023326.t1
chr4.2 CDS 15527631 15529067 15527631 ID=cds.MS.gene023326.t1;Parent=MS.gene023326.t1
Gene Sequence

>MS.gene023326

ATGGAGGAGGATGAGATTCAAGCCCAACATAAATTCCCAAGAGTTGAAAATGAAGAAGAAAATCATGGAAGAGAGATCATTAGAAGAGGTGGAGGAGGATGTGATGAAAGCACAAATCTTAACAGGTTCAATAGTTGGCATCATCATTCTTCAAGAATTATAAGGGTTTCAAGAGCTTCTGGTGGAAAAGATAGGCATAGTAAAGTAATGACTTCAAAGGGTTTAAGAGATAGAAGGGTTAGGCTTTCTGTTACAACAGCTATTCAGTTTTATGATCTTCAAGATAGACTTGGTTATGACCAACCAAGTAAAGCTGTTGAATGGTTGATAAAATCAGCTTCTGATGCTATTTCAGAACTACCTTCACTCAACAACTCATTATTCTCTGGTGATACACCTAGTAATAATAATCAGCCAAGTGAACAAGGTGTTGATTCGGTTCATGATGCTGAAATGGTTGTTGAGAATGGTGAAAACAATTATCAAAGTCAGAATCTTTCTTTGTCTAAATCTGGTTGTAGTAGCACTTCTGAGACAAGTAAAGGTTCTGGTTTGTCTCTTTCAAGATCTGATGTTCGTGTGAGCCGTGTCAAAGCTAGAGAAAGAGCAAGGGAAAGAACTGCTAAAGAGAAGGATAAAGAGATTAATCATGAATCTCACAATACTCATCAACATCACAACAATGTAAACTCTTCCATTTCTCAAACAGCTTCATTCACTGAACTACTTACTTGTGGAATCAACAATACTGTTACTACCACAAATAGTCCAAGAGGGTCAGCTGAAGAACCTAGCTTTTTTAACAAAGCTAGACAACAGCAGCAGCAACAATGGAATTCTTCAGCACCAATGGATCATTACTTTAGTCCAATGTTTCCAGGATCTTCTTCATCAAGAGCACATCATCATCATCTATTAGGACATTCACTTCATGATCATCAATCAATGACAATGTCTAACTCAGTTTCACCATTCAGTACTAGTGGTGAGAATCATTCAACAGATCAACATCAACATCAGCATCATTTGCAGCATCCATTTTCATTCATACCAGATCATATGATGCAAAATGTGGTTACTTCTTCTTCTACTCAACCAAGCGGGAACAACAATGATTACAATCTGAATTTCACAATCTCTTCGGGCCTTGCTGGTTATAATAGGGGGACCCTTCAGTCCAATTCACCGTCTCTTTTGTCTCATCTTCAAAGGTTTTCAGTTTCACCTTTAGATGGATCCAACAATCTACCTTTTTTCATGGGAGGAGGTGCTTCTGCTTCTTCTTCTCCTGCTTCAGCTTCACCTTCAGCTGCTCCTACAATGGAGAATAATCATCATCATCACCATCACCAGATTCAACACCATCAGTTTTCATCTGTTTTTGATGGTAGCAGCTTGCAGCTCTATTCAGATCAGAAAGGGAAACCCAAAAACTGA
Protein sequence

>MS.gene023326.t1

MEEDEIQAQHKFPRVENEEENHGREIIRRGGGGCDESTNLNRFNSWHHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAISELPSLNNSLFSGDTPSNNNQPSEQGVDSVHDAEMVVENGENNYQSQNLSLSKSGCSSTSETSKGSGLSLSRSDVRVSRVKARERARERTAKEKDKEINHESHNTHQHHNNVNSSISQTASFTELLTCGINNTVTTTNSPRGSAEEPSFFNKARQQQQQQWNSSAPMDHYFSPMFPGSSSSRAHHHHLLGHSLHDHQSMTMSNSVSPFSTSGENHSTDQHQHQHHLQHPFSFIPDHMMQNVVTSSSTQPSGNNNDYNLNFTISSGLAGYNRGTLQSNSPSLLSHLQRFSVSPLDGSNNLPFFMGGGASASSSPASASPSAAPTMENNHHHHHHQIQHHQFSSVFDGSSLQLYSDQKGKPKN