AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023410.t1 MTR_6g008970 77.510 249 14 3 1 207 1 249 2.40e-103 334
MS.gene023410.t1 MTR_6g008995 63.277 177 30 2 44 187 27 201 8.66e-62 206
MS.gene023410.t1 MTR_5g036670 48.571 245 68 7 1 207 1 225 1.56e-56 201
MS.gene023410.t1 MTR_8g062700 48.800 250 74 5 1 214 1 232 2.33e-54 194
MS.gene023410.t1 MTR_8g062700 48.800 250 74 5 1 214 1 232 2.52e-54 194
MS.gene023410.t1 MTR_6g008995 60.274 146 23 2 75 187 1 144 4.42e-46 164
MS.gene023410.t1 MTR_1g105960 64.000 75 27 0 55 129 2 76 5.81e-26 101
MS.gene023410.t1 MTR_1g105955 43.836 146 54 4 51 169 13 157 6.34e-25 100
MS.gene023410.t1 MTR_1g105955 53.623 69 32 0 54 122 95 163 7.53e-16 75.5
MS.gene023410.t1 MTR_7g013410 38.095 147 49 3 58 169 2 141 1.52e-23 95.9
MS.gene023410.t1 MTR_8g062350 49.412 85 43 0 48 132 8 92 1.49e-21 92.4
MS.gene023410.t1 MTR_1g104940 55.263 76 34 0 54 129 14 89 1.86e-20 86.7
MS.gene023410.t1 MTR_3g006125 58.108 74 30 1 50 122 176 249 3.84e-20 89.7
MS.gene023410.t1 MTR_3g006125 46.729 107 52 2 48 149 83 189 5.55e-16 77.8
MS.gene023410.t1 MTR_3g006065 58.974 78 31 1 47 123 83 160 6.00e-20 87.4
MS.gene023410.t1 MTR_3g006065 35.897 156 62 3 48 169 2 153 7.84e-17 78.6
MS.gene023410.t1 MTR_3g006150 58.974 78 31 1 47 123 83 160 1.47e-19 85.5
MS.gene023410.t1 MTR_3g006150 37.975 158 56 4 48 169 2 153 2.55e-18 82.0
MS.gene023410.t1 MTR_1g023820 42.400 125 45 5 84 208 17 114 2.60e-19 83.6
MS.gene023410.t1 MTR_3g006105 45.794 107 53 3 48 149 2 108 7.70e-18 81.3
MS.gene023410.t1 MTR_3g006105 52.703 74 34 1 50 122 95 168 1.81e-15 74.7
MS.gene023410.t1 MTR_7g013380 37.500 136 58 3 54 187 185 295 1.52e-16 80.1
MS.gene023410.t1 MTR_1g104960 36.441 118 73 1 53 170 12 127 1.53e-16 77.4
MS.gene023410.t1 MTR_1g104960 44.595 74 41 0 55 128 100 173 7.28e-14 69.7
MS.gene023410.t1 MTR_4g133300 36.424 151 54 3 53 170 11 152 1.57e-16 79.3
MS.gene023410.t1 MTR_4g133300 53.947 76 33 1 48 123 168 241 6.62e-16 77.4
MS.gene023410.t1 MTR_4g133300 32.903 155 74 2 46 170 81 235 1.47e-13 70.5
MS.gene023410.t1 MTR_1g105010 41.111 90 48 1 50 134 12 101 1.67e-16 75.5
MS.gene023410.t1 MTR_1g104937 47.368 76 40 0 54 129 12 87 1.84e-16 75.5
MS.gene023410.t1 MTR_3g006185 51.351 74 35 1 50 122 94 167 2.39e-16 77.0
MS.gene023410.t1 MTR_3g006185 51.948 77 36 1 48 123 2 78 3.63e-15 73.6
MS.gene023410.t1 MTR_4g133470 53.947 76 33 1 48 123 168 241 6.43e-16 77.4
MS.gene023410.t1 MTR_4g133470 35.762 151 55 3 53 170 11 152 9.80e-16 77.0
MS.gene023410.t1 MTR_4g133470 32.258 155 75 2 46 170 81 235 4.78e-12 66.2
MS.gene023410.t1 MTR_2g097830 42.424 99 48 2 53 151 69 158 7.95e-16 75.1
MS.gene023410.t1 MTR_1g093310 50.649 77 30 2 49 123 2 72 4.18e-15 70.5
MS.gene023410.t1 MTR_5g055670 76.744 43 10 0 85 127 87 129 7.61e-15 71.6
MS.gene023410.t1 MTR_1g109550 39.130 115 58 3 54 168 16 118 1.01e-14 71.2
MS.gene023410.t1 MTR_7g089490 47.222 72 38 0 51 122 13 84 1.69e-14 70.1
MS.gene023410.t1 MTR_0091s0080 33.333 129 68 2 218 330 130 256 2.20e-12 68.9
MS.gene023410.t1 MTR_3g006010 48.052 77 39 1 48 123 2 78 2.51e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023410.t1 AT5G15020 54.015 274 77 7 1 235 1 264 7.69e-70 239
MS.gene023410.t1 AT5G15020 54.015 274 77 7 1 235 1 264 9.67e-70 239
MS.gene023410.t1 AT3G01320 56.148 244 66 5 1 207 1 240 4.80e-69 237
MS.gene023410.t1 AT3G01320 56.148 244 66 5 1 207 1 240 5.65e-69 237
MS.gene023410.t1 AT1G70060 51.942 206 55 4 43 211 3 201 1.19e-50 184
MS.gene023410.t1 AT1G70060 51.942 206 55 4 43 211 3 201 1.19e-50 184
MS.gene023410.t1 AT1G24190 57.059 170 37 2 40 176 3 169 5.22e-48 176
MS.gene023410.t1 AT1G24190 57.059 170 37 2 40 176 3 169 5.29e-48 176
MS.gene023410.t1 AT1G24190 57.059 170 37 2 40 176 3 169 5.48e-48 176
MS.gene023410.t1 AT1G59890 48.663 187 59 4 54 207 45 227 1.53e-39 151
MS.gene023410.t1 AT1G59890 48.663 187 59 4 54 207 45 227 1.69e-39 151
MS.gene023410.t1 AT1G59890 48.663 187 59 4 54 207 45 227 1.79e-39 151
MS.gene023410.t1 AT1G59890 48.663 187 59 4 54 207 45 227 1.91e-39 151
MS.gene023410.t1 AT1G70030 54.400 125 56 1 45 169 13 136 1.35e-37 133
MS.gene023410.t1 AT5G15025 57.851 121 38 2 9 128 14 122 2.82e-37 132
MS.gene023410.t1 AT1G10450 41.935 217 63 5 1 180 1 191 2.92e-34 135
MS.gene023410.t1 AT1G10450 41.935 217 63 5 1 180 1 191 2.92e-34 135
MS.gene023410.t1 AT1G10450 41.935 217 63 5 1 180 52 242 3.36e-34 135
MS.gene023410.t1 AT1G24200 42.162 185 65 4 40 191 3 178 4.80e-33 123
MS.gene023410.t1 AT1G70030 43.312 157 56 2 45 169 2 157 3.92e-31 117
MS.gene023410.t1 AT1G70030 52.336 107 50 1 45 151 13 118 2.59e-29 110
MS.gene023410.t1 AT4G12020 55.914 93 35 2 36 128 295 381 5.73e-23 102
MS.gene023410.t1 AT4G12020 55.914 93 35 2 36 128 295 381 5.83e-23 102
MS.gene023410.t1 AT4G12020 55.914 93 35 2 36 128 295 381 5.83e-23 102
MS.gene023410.t1 AT4G12020 55.914 93 35 2 36 128 295 381 5.86e-23 102
MS.gene023410.t1 AT4G12020 55.914 93 35 2 36 128 295 381 5.86e-23 102
MS.gene023410.t1 AT4G12020 55.914 93 35 2 36 128 295 381 5.88e-23 102
MS.gene023410.t1 AT4G12020 55.914 93 35 2 36 128 295 381 5.93e-23 102
MS.gene023410.t1 AT4G12020 55.914 93 35 2 36 128 295 381 5.99e-23 102
MS.gene023410.t1 AT4G12020 55.914 93 35 2 36 128 228 314 6.12e-23 102
MS.gene023410.t1 AT4G12020 55.914 93 35 2 36 128 295 381 6.12e-23 102
MS.gene023410.t1 AT4G12020 55.914 93 35 2 36 128 295 381 6.16e-23 102
MS.gene023410.t1 AT5G15040 54.054 74 34 0 57 130 6 79 1.75e-21 88.6
MS.gene023410.t1 AT5G15040 54.054 74 34 0 57 130 6 79 1.75e-21 88.6
MS.gene023410.t1 AT5G15040 54.054 74 34 0 57 130 6 79 1.75e-21 88.6
MS.gene023410.t1 AT5G35610 37.500 144 68 3 45 166 1 144 7.51e-21 89.0
MS.gene023410.t1 AT1G27220 48.148 81 42 0 42 122 2 82 5.25e-17 79.0
MS.gene023410.t1 AT1G27250 43.478 92 46 1 30 121 3 88 2.97e-16 75.5
MS.gene023410.t1 AT1G23810 44.595 74 41 0 42 115 97 170 5.79e-14 71.6
MS.gene023410.t1 AT1G24250 47.297 74 39 0 42 115 108 181 5.89e-14 71.6
MS.gene023410.t1 AT1G27260 33.333 105 62 2 53 151 2 104 1.78e-11 63.9
MS.gene023410.t1 AT1G24230 31.847 157 81 7 42 175 3 156 2.27e-11 63.9
MS.gene023410.t1 AT1G24210 41.892 74 43 0 43 116 3 76 5.91e-11 60.8

Find 100 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATTGGTTGTCAATTTC+TGG 0.090804 4.4:-15575701 None:intergenic
AATCTCCATGTGACTTAAAA+AGG 0.145675 4.4:-15576373 None:intergenic
CAATAGGAGATACGTGTTTC+AGG 0.250900 4.4:+15578769 MS.gene023410:CDS
GGAGTTAACGGAGGAGGAGG+TGG 0.279368 4.4:+15575663 MS.gene023410:CDS
GAAGAACAATACTGTGCTTT+TGG 0.295335 4.4:+15578688 MS.gene023410:CDS
GGAAGTGAAAGACATGTTTC+AGG 0.324751 4.4:+15575740 MS.gene023410:CDS
GTCTTTCACTTCCTTCAAAT+AGG 0.332619 4.4:-15575730 None:intergenic
ATCTCCGCCACCGCCACCTC+CGG 0.344827 4.4:-15575640 None:intergenic
ACAGTATTGTTCTTCTCTTC+AGG 0.355732 4.4:-15578680 None:intergenic
TCTAGTTCTTGCTGTTACTA+AGG 0.363504 4.4:+15577676 MS.gene023410:CDS
CAAATAGGATAAAGCATCAT+TGG 0.368007 4.4:-15575715 None:intergenic
TTGATTATTGTGGCTTTGTC+TGG 0.372566 4.4:+15577549 MS.gene023410:CDS
TTAAGTGCAGTGCAGATATA+AGG 0.373213 4.4:-15578623 None:intergenic
TCTCCTATTGGCACCGTCAA+TGG 0.375094 4.4:-15578756 None:intergenic
GGCCCCGGAGGTGGCGGTGG+CGG 0.377698 4.4:+15575636 MS.gene023410:CDS
GGAGGTGGCGGTGGCGGAGA+TGG 0.390060 4.4:+15575642 MS.gene023410:CDS
TTTGCATAATTAGAGGAGAT+TGG 0.395079 4.4:+15578600 MS.gene023410:intron
AGTTAACGGAGGAGGAGGTG+GGG 0.396605 4.4:+15575665 MS.gene023410:CDS
ATCATTGGTTGTCAATTTCT+GGG 0.397391 4.4:-15575700 None:intergenic
CAAGGCCCCGGAGGTGGCGG+TGG 0.404406 4.4:+15575633 MS.gene023410:CDS
ATCTATCTGCGATTTGTTCG+TGG 0.404590 4.4:+15577716 MS.gene023410:CDS
TCTCCGCCACCGCCACCTCC+GGG 0.407099 4.4:-15575639 None:intergenic
AACCAGATACTCCCATGGTT+TGG 0.407163 4.4:+15578466 MS.gene023410:intron
GGTCAAGGCCCCGGAGGTGG+CGG 0.408038 4.4:+15575630 MS.gene023410:CDS
TAATTTATCCTGCTCTTCAC+TGG 0.416641 4.4:-15578815 None:intergenic
CTCCTATTGGCACCGTCAAT+GGG 0.420444 4.4:-15578755 None:intergenic
TCTCAATTCAAACGACCCTT+TGG 0.427457 4.4:+15574946 MS.gene023410:CDS
CTGAAACACGTATCTCCTAT+TGG 0.427555 4.4:-15578768 None:intergenic
ACTAACCTGCGTGCTTTGTA+AGG 0.428301 4.4:-15577641 None:intergenic
TCCACACAGCATGCTCCATT+TGG 0.429499 4.4:+15576443 MS.gene023410:CDS
CTGCACTGCACTTAAGTTGA+AGG 0.431243 4.4:+15578631 MS.gene023410:CDS
TGATGCTTTATCCTATTTGA+AGG 0.431866 4.4:+15575719 MS.gene023410:CDS
TGATACTGACTTGGTTAAAC+AGG 0.433767 4.4:+15577920 MS.gene023410:CDS
TTCCAGTGTGCACTAGAACT+TGG 0.437326 4.4:+15577894 MS.gene023410:intron
GAGTTAACGGAGGAGGAGGT+GGG 0.437678 4.4:+15575664 MS.gene023410:CDS
TGCATTGAATTTCGACCAAA+TGG 0.453988 4.4:-15576458 None:intergenic
CGAGGTCATGAAAGATTTCA+AGG 0.454978 4.4:+15575791 MS.gene023410:CDS
GTTAACGGAGGAGGAGGTGG+GGG 0.458649 4.4:+15575666 MS.gene023410:CDS
AGTGTTATCTCATATCCCTT+TGG 0.473567 4.4:-15576011 None:intergenic
GAAGGTGCTGAAGAATTATC+TGG 0.476819 4.4:-15576422 None:intergenic
AAGTCTCTGGTATGTAAGAT+TGG 0.478389 4.4:+15577602 MS.gene023410:CDS
ATCACTTTCATTGATTATTG+TGG 0.481166 4.4:+15577539 MS.gene023410:CDS
TATGGTCAAGGCCCCGGAGG+TGG 0.484108 4.4:+15575627 MS.gene023410:CDS
TTCGTTGTCCAGTGAAGAGC+AGG 0.484634 4.4:+15578807 MS.gene023410:CDS
TACTTGCATTTGCCGCATCA+CGG 0.484825 4.4:-15576510 None:intergenic
TGGTGTCATAGCAAGGGTTA+AGG 0.492194 4.4:+15575938 MS.gene023410:CDS
GGTGGCGGAGATGGAGTTAA+CGG 0.494292 4.4:+15575651 MS.gene023410:CDS
TTATCTCATATCCCTTTGGC+AGG 0.495574 4.4:-15576007 None:intergenic
CTACAAGCTTAAGACATGTA+TGG 0.501808 4.4:+15577947 MS.gene023410:CDS
ACTTGCATTTGCCGCATCAC+GGG 0.507348 4.4:-15576509 None:intergenic
GTTTCCAGGACTGACACTAC+TGG 0.514491 4.4:+15575918 MS.gene023410:intron
ATGTAAGATTGGAGGTGAGT+GGG 0.516033 4.4:+15577613 MS.gene023410:CDS
GATGGAGTTAACGGAGGAGG+AGG 0.517203 4.4:+15575660 MS.gene023410:CDS
TGAAGCTATGGTCAAGGCCC+CGG 0.518872 4.4:+15575621 MS.gene023410:intron
AGCCCATTGACGGTGCCAAT+AGG 0.521460 4.4:+15578753 MS.gene023410:CDS
TTTAACACTTTCCTGCCAAA+GGG 0.523436 4.4:+15575996 MS.gene023410:CDS
GTGTTTGTGAAGCCCATTGA+CGG 0.530801 4.4:+15578743 MS.gene023410:CDS
CTGGACAACGAATGAGATGC+TGG 0.534856 4.4:-15578796 None:intergenic
GTTCGTGGACCATGCGATGA+TGG 0.536080 4.4:+15577731 MS.gene023410:CDS
ACACTACTGGTGTCATAGCA+AGG 0.537234 4.4:+15575931 MS.gene023410:CDS
TGATTGTGTAGGTATGAAGA+GGG 0.537685 4.4:+15574909 None:intergenic
GGAGATGGAGTTAACGGAGG+AGG 0.544905 4.4:+15575657 MS.gene023410:CDS
TGTGCAAGTAGACAAGTCTC+TGG 0.546119 4.4:+15577589 MS.gene023410:CDS
TTGTCAGCATGCATTGCGCT+TGG 0.547143 4.4:+15578492 MS.gene023410:CDS
ATTTAACACTTTCCTGCCAA+AGG 0.547821 4.4:+15575995 MS.gene023410:CDS
TGTAAGATTGGAGGTGAGTG+GGG 0.559652 4.4:+15577614 MS.gene023410:CDS
TTGATTGTGTAGGTATGAAG+AGG 0.565183 4.4:+15574908 None:intergenic
CGACCCTTTGGTTCATCATG+TGG 0.570540 4.4:+15574958 MS.gene023410:CDS
TGCTGACAAAAGCCAAACCA+TGG 0.576067 4.4:-15578478 None:intergenic
TTCTTGCTGTTACTAAGGAG+AGG 0.577976 4.4:+15577681 MS.gene023410:CDS
TCTCTGGTATGTAAGATTGG+AGG 0.578117 4.4:+15577605 MS.gene023410:CDS
TCTTGCTGTTACTAAGGAGA+GGG 0.578245 4.4:+15577682 MS.gene023410:CDS
CTCCGCCACCGCCACCTCCG+GGG 0.583189 4.4:-15575638 None:intergenic
GGTATGAAGAGGGCTAGAGA+TGG 0.586357 4.4:+15574919 None:intergenic
ATCACCACATGATGAACCAA+AGG 0.588474 4.4:-15574962 None:intergenic
TGTGTATGAAGCTATGGTCA+AGG 0.590142 4.4:+15575615 MS.gene023410:intron
GATAACACTTGATGAGGATG+AGG 0.597977 4.4:+15576025 MS.gene023410:CDS
CAATGCAGCGCTTCAATGAG+CGG 0.601836 4.4:+15576474 MS.gene023410:CDS
TTTCAAACCAGATACTCCCA+TGG 0.607664 4.4:+15578461 MS.gene023410:intron
CAGTGTGCACTAGAACTTGG+TGG 0.610191 4.4:+15577897 MS.gene023410:intron
AGGGTTAAGGAACTATTCAA+AGG 0.610387 4.4:+15575951 MS.gene023410:CDS
CTTCTATGACACCCGTGATG+CGG 0.613190 4.4:+15576498 MS.gene023410:CDS
ACTTGGTGGTGATACTGACT+TGG 0.620652 4.4:+15577911 MS.gene023410:CDS
AATGGAGCATGCTGTGTGGA+AGG 0.623233 4.4:-15576440 None:intergenic
TATGTAAGATTGGAGGTGAG+TGG 0.623493 4.4:+15577612 MS.gene023410:CDS
CACTACTGGTGTCATAGCAA+GGG 0.626400 4.4:+15575932 MS.gene023410:CDS
TCACCACATGATGAACCAAA+GGG 0.627114 4.4:-15574961 None:intergenic
AGATACTCTCCATCATCGCA+TGG 0.629329 4.4:-15577740 None:intergenic
ACGTGATGATTACACTGAAG+TGG 0.630722 4.4:-15578722 None:intergenic
ATATGAGATAACACTTGATG+AGG 0.638086 4.4:+15576019 MS.gene023410:CDS
GCTGACAAAAGCCAAACCAT+GGG 0.644904 4.4:-15578477 None:intergenic
TACATGTCTTAAGCTTGTAG+AGG 0.651623 4.4:-15577944 None:intergenic
GCGGCAAATGCAAGTAGACA+AGG 0.660472 4.4:+15576517 MS.gene023410:CDS
TGAAATCTTTCATGACCTCG+AGG 0.667983 4.4:-15575788 None:intergenic
ATTGGTTGTCAATTTCTGGG+AGG 0.681799 4.4:-15575697 None:intergenic
AAAATATGACATGTTCCTCG+AGG 0.689273 4.4:+15575773 MS.gene023410:CDS
ACCAAATGGAGCATGCTGTG+TGG 0.702132 4.4:-15576444 None:intergenic
GAATGCCTTACAAAGCACGC+AGG 0.709114 4.4:+15577636 MS.gene023410:CDS
GGCGGAGATGGAGTTAACGG+AGG 0.714332 4.4:+15575654 MS.gene023410:CDS
AGCTATGGTCAAGGCCCCGG+AGG 0.727156 4.4:+15575624 MS.gene023410:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTCAATTAATTTATA+GGG + chr4.4:15576806-15576825 MS.gene023410:intron 10.0%
!!! TCAATTTTCAATTAATTTAT+AGG + chr4.4:15576805-15576824 MS.gene023410:intron 10.0%
!!! TTTATTTGTTATTACTATAT+AGG + chr4.4:15578305-15578324 MS.gene023410:intron 10.0%
!!! TTTTTTAAATAAAAAACTCT+AGG + chr4.4:15576343-15576362 MS.gene023410:intron 10.0%
!! ATCAATTAATTCCAAAATTA+AGG - chr4.4:15576969-15576988 None:intergenic 15.0%
!! TAAAGAAACAAATAATTTCA+TGG + chr4.4:15577225-15577244 MS.gene023410:intron 15.0%
!!! AATTTTTTATTATTTGGTTC+TGG + chr4.4:15577837-15577856 MS.gene023410:intron 15.0%
!!! ATCGTCAATTTTTTATTATT+TGG + chr4.4:15577831-15577850 MS.gene023410:intron 15.0%
!!! ATTATTTTGAAAATCTTTGT+TGG + chr4.4:15576833-15576852 MS.gene023410:intron 15.0%
!!! ATTTGAGTTTAAATTGATTT+TGG + chr4.4:15575378-15575397 MS.gene023410:intron 15.0%
!!! CAAAGATTTTCAAAATAATA+CGG - chr4.4:15576832-15576851 None:intergenic 15.0%
!!! GATTTGAATTTAATTTGATT+TGG + chr4.4:15575234-15575253 MS.gene023410:intron 15.0%
!!! GTTGTATTTAAATTTTTGAA+TGG + chr4.4:15578383-15578402 MS.gene023410:intron 15.0%
!!! TGAATTTGAAATTTTGATTT+TGG + chr4.4:15575036-15575055 MS.gene023410:intron 15.0%
!! AAAGACTGAAAAAACAAAAT+TGG - chr4.4:15575092-15575111 None:intergenic 20.0%
!! AAGTTACATTTATTACTTGA+TGG - chr4.4:15578176-15578195 None:intergenic 20.0%
!! AGTTACATTTATTACTTGAT+GGG - chr4.4:15578175-15578194 None:intergenic 20.0%
!! ATAGATACACATGAAAAAAA+TGG - chr4.4:15578236-15578255 None:intergenic 20.0%
!! CTTTCATGATATGTAATTTA+TGG + chr4.4:15576693-15576712 MS.gene023410:intron 20.0%
!! GAACAAAAATATAGATCATA+TGG - chr4.4:15577781-15577800 None:intergenic 20.0%
!! TAGATACACATGAAAAAAAT+GGG - chr4.4:15578235-15578254 None:intergenic 20.0%
!! TGTTAAATCCAAAAATCAAA+TGG - chr4.4:15575983-15576002 None:intergenic 20.0%
!!! AAAGTCTTCTAAATTAGTTT+AGG + chr4.4:15578047-15578066 MS.gene023410:intron 20.0%
!!! AATTGATTTGTAGCTTTAAT+CGG + chr4.4:15576162-15576181 MS.gene023410:intron 20.0%
!!! AATTGTTGTTGAATTTCATT+AGG + chr4.4:15575202-15575221 MS.gene023410:intron 20.0%
!!! AATTTTGTTTTTTCAGTCTT+TGG + chr4.4:15575091-15575110 MS.gene023410:intron 20.0%
!!! ACAATCTTAGTTTAGTTTAT+TGG + chr4.4:15577038-15577057 MS.gene023410:intron 20.0%
!!! ACATGTTTACAAATCATTTT+TGG + chr4.4:15576223-15576242 MS.gene023410:intron 20.0%
!!! AGTTGTTTCAATTTTGATTT+CGG + chr4.4:15578103-15578122 MS.gene023410:intron 20.0%
!!! ATTGTTGTTGAATTTCATTA+GGG + chr4.4:15575203-15575222 MS.gene023410:intron 20.0%
!!! ATTTTGTTTTTTCAGTCTTT+GGG + chr4.4:15575092-15575111 MS.gene023410:intron 20.0%
!!! CAACTTTATGAGTAAATTTT+TGG + chr4.4:15577082-15577101 MS.gene023410:intron 20.0%
!!! GTAAAAAATTTGTTATGAAG+AGG - chr4.4:15576556-15576575 None:intergenic 20.0%
!!! GTATTTAAATTTTTGAATGG+AGG + chr4.4:15578386-15578405 MS.gene023410:intron 20.0%
!!! TTTGTAATGATTTTGAATGA+CGG + chr4.4:15575845-15575864 MS.gene023410:intron 20.0%
!!! TTTTGTTCGTTTAAAAACAT+TGG + chr4.4:15576307-15576326 MS.gene023410:intron 20.0%
! AACAGTGAAACACAAAATTA+GGG - chr4.4:15575130-15575149 None:intergenic 25.0%
! ACATGGCATTATTAAACATA+AGG + chr4.4:15576856-15576875 MS.gene023410:intron 25.0%
! AGATACACATGAAAAAAATG+GGG - chr4.4:15578234-15578253 None:intergenic 25.0%
! AGGTTCAAATGTTTACTATA+AGG + chr4.4:15576876-15576895 MS.gene023410:intron 25.0%
! ATCATCATCAAAACTGTTAA+TGG + chr4.4:15577439-15577458 MS.gene023410:intron 25.0%
! ATTGTTGTATGAAACTTACT+AGG + chr4.4:15575440-15575459 MS.gene023410:intron 25.0%
! GTTGTAGTTGTTGATATTTA+GGG + chr4.4:15575569-15575588 MS.gene023410:intron 25.0%
! TCATGTGTATCTATTTAACT+TGG + chr4.4:15578242-15578261 MS.gene023410:intron 25.0%
! TGTTGTAGTTGTTGATATTT+AGG + chr4.4:15575568-15575587 MS.gene023410:intron 25.0%
! TTACATATCATGAAAGATTC+AGG - chr4.4:15576689-15576708 None:intergenic 25.0%
!! AAAAAGAAAGCATGTTCAAA+TGG - chr4.4:15576282-15576301 None:intergenic 25.0%
!! ATCACTTTCATTGATTATTG+TGG + chr4.4:15577539-15577558 MS.gene023410:CDS 25.0%
!! ATGCTGCAATTCTTTTAAAT+TGG + chr4.4:15576610-15576629 MS.gene023410:intron 25.0%
!! TAATTGTTGCATTCTGATTT+TGG + chr4.4:15578428-15578447 MS.gene023410:intron 25.0%
!! TAGTTTTCTGAACAAGATAA+AGG + chr4.4:15576091-15576110 MS.gene023410:CDS 25.0%
!! TCAAATTCAACTGTTTTCTT+CGG - chr4.4:15576062-15576081 None:intergenic 25.0%
!! TGCTGCAATTCTTTTAAATT+GGG + chr4.4:15576611-15576630 MS.gene023410:intron 25.0%
!! TGTAAACATGTTCATCATTT+TGG - chr4.4:15576214-15576233 None:intergenic 25.0%
!!! AAAATTTGTTATGAAGAGGA+AGG - chr4.4:15576552-15576571 None:intergenic 25.0%
!!! ATCTATATTTTTGTTCTTCC+GGG + chr4.4:15577785-15577804 MS.gene023410:intron 25.0%
!!! ATGAATTTTGATAGTGTTGT+AGG + chr4.4:15575533-15575552 MS.gene023410:intron 25.0%
!!! ATTTTGGAGTTGTTGTATAA+TGG + chr4.4:15575394-15575413 MS.gene023410:intron 25.0%
!!! CTTTATGAGTAAATTTTTGG+TGG + chr4.4:15577085-15577104 MS.gene023410:intron 25.0%
!!! GAGTTTTGTTATGAATTTTG+AGG + chr4.4:15576943-15576962 MS.gene023410:intron 25.0%
!!! GATCTATATTTTTGTTCTTC+CGG + chr4.4:15577784-15577803 MS.gene023410:intron 25.0%
!!! TTTTGGAGTTGTTGTATAAT+GGG + chr4.4:15575395-15575414 MS.gene023410:intron 25.0%
AACTAACTCAGTAACTGTAA+TGG - chr4.4:15576133-15576152 None:intergenic 30.0%
AATCTCCATGTGACTTAAAA+AGG - chr4.4:15576376-15576395 None:intergenic 30.0%
ACCTTAATATAAACCAAGAG+TGG - chr4.4:15578140-15578159 None:intergenic 30.0%
ACTTATATCTATCTCACTTG+TGG + chr4.4:15575317-15575336 MS.gene023410:intron 30.0%
ATATGAGATAACACTTGATG+AGG + chr4.4:15576019-15576038 MS.gene023410:CDS 30.0%
ATCCTATCAAAGATATAGAC+AGG + chr4.4:15578278-15578297 MS.gene023410:intron 30.0%
ATCTCCATGTGACTTAAAAA+GGG - chr4.4:15576375-15576394 None:intergenic 30.0%
ATGGTAGTATATCATTTGTC+AGG + chr4.4:15578342-15578361 MS.gene023410:intron 30.0%
ATGTACATAAATGATACCAG+AGG - chr4.4:15577370-15577389 None:intergenic 30.0%
CAACAGTGAAACACAAAATT+AGG - chr4.4:15575274-15575293 None:intergenic 30.0%
GAACAGTGAAACACAAAATT+AGG - chr4.4:15575131-15575150 None:intergenic 30.0%
GATACACATGAAAAAAATGG+GGG - chr4.4:15578233-15578252 None:intergenic 30.0%
TATAAACCAAGAGTGGAATT+TGG - chr4.4:15578133-15578152 None:intergenic 30.0%
TATAGATCCTAGCTAATTAC+AGG + chr4.4:15577001-15577020 MS.gene023410:intron 30.0%
TCCACTCTTGGTTTATATTA+AGG + chr4.4:15578136-15578155 MS.gene023410:intron 30.0%
TCTGGTATCATTTATGTACA+TGG + chr4.4:15577369-15577388 MS.gene023410:intron 30.0%
TGATGCTTTATCCTATTTGA+AGG + chr4.4:15575719-15575738 MS.gene023410:CDS 30.0%
TTAAGATCCCTTGATTGTTT+AGG - chr4.4:15575880-15575899 None:intergenic 30.0%
TTGAAAATCTTTGTTGGACA+TGG + chr4.4:15576839-15576858 MS.gene023410:intron 30.0%
TTGGATTATGGTATAGGTTT+CGG + chr4.4:15576640-15576659 MS.gene023410:intron 30.0%
TTTGCATAATTAGAGGAGAT+TGG + chr4.4:15578600-15578619 MS.gene023410:intron 30.0%
! AGTTTAGTTTATTGGTGTTC+TGG + chr4.4:15577046-15577065 MS.gene023410:intron 30.0%
! ATCATTGGTTGTCAATTTCT+GGG - chr4.4:15575703-15575722 None:intergenic 30.0%
! ATTGCAGCAATGATTTTACT+TGG + chr4.4:15577150-15577169 MS.gene023410:intron 30.0%
! CAAATAGGATAAAGCATCAT+TGG - chr4.4:15575718-15575737 None:intergenic 30.0%
! CATGGTTTTCTTTAAGTACA+AGG + chr4.4:15577243-15577262 MS.gene023410:intron 30.0%
! CTTTTAAATTGGGTTTGAGT+TGG + chr4.4:15576621-15576640 MS.gene023410:intron 30.0%
! GACTGGAAAAGATATGTTTT+AGG - chr4.4:15577304-15577323 None:intergenic 30.0%
! GTTTAGTTTATTGGTGTTCT+GGG + chr4.4:15577047-15577066 MS.gene023410:intron 30.0%
! TTGCAGCAATGATTTTACTT+GGG + chr4.4:15577151-15577170 MS.gene023410:intron 30.0%
! TTGTTGTATAATGGGATCAT+TGG + chr4.4:15575403-15575422 MS.gene023410:intron 30.0%
!! AAGCTGTTTTGCATAATTAG+AGG + chr4.4:15578593-15578612 MS.gene023410:intron 30.0%
!! ATTATTTGGTTCTGGTATGT+TGG + chr4.4:15577845-15577864 MS.gene023410:intron 30.0%
!! ATTTGTCAGGCTATTTTCTT+TGG + chr4.4:15578355-15578374 MS.gene023410:intron 30.0%
!! GTAACTTGCTTATATGTCTT+GGG + chr4.4:15578189-15578208 MS.gene023410:intron 30.0%
!! TGTAACTTGCTTATATGTCT+TGG + chr4.4:15578188-15578207 MS.gene023410:intron 30.0%
!! TTTGAGTTGGATTATGGTAT+AGG + chr4.4:15576634-15576653 MS.gene023410:intron 30.0%
!!! AGTCATGTTCGTGTTATTTT+TGG + chr4.4:15576716-15576735 MS.gene023410:intron 30.0%
!!! ATTTATTTTTGGCTGTTTCC+AGG + chr4.4:15575904-15575923 MS.gene023410:intron 30.0%
!!! GAATTTTGAGGCCTTAATTT+TGG + chr4.4:15576955-15576974 MS.gene023410:intron 30.0%
AAAATATGACATGTTCCTCG+AGG + chr4.4:15575773-15575792 MS.gene023410:CDS 35.0%
AAGTCTCTGGTATGTAAGAT+TGG + chr4.4:15577602-15577621 MS.gene023410:CDS 35.0%
ACAGTATTGTTCTTCTCTTC+AGG - chr4.4:15578683-15578702 None:intergenic 35.0%
ACATTGTGCCTAAACAATCA+AGG + chr4.4:15575869-15575888 MS.gene023410:intron 35.0%
ACTTATGTCTATTTCACTCG+TGG + chr4.4:15575174-15575193 MS.gene023410:intron 35.0%
AGCCTGTCTATATCTTTGAT+AGG - chr4.4:15578283-15578302 None:intergenic 35.0%
AGGGTTAAGGAACTATTCAA+AGG + chr4.4:15575951-15575970 MS.gene023410:CDS 35.0%
AGTGTTATCTCATATCCCTT+TGG - chr4.4:15576014-15576033 None:intergenic 35.0%
ATTTAACACTTTCCTGCCAA+AGG + chr4.4:15575995-15576014 MS.gene023410:CDS 35.0%
CATATCACAAATTGACTGAC+TGG - chr4.4:15577321-15577340 None:intergenic 35.0%
CATTGTGCCTAAACAATCAA+GGG + chr4.4:15575870-15575889 MS.gene023410:intron 35.0%
CTACAAGCTTAAGACATGTA+TGG + chr4.4:15577947-15577966 MS.gene023410:CDS 35.0%
GTCTTTCACTTCCTTCAAAT+AGG - chr4.4:15575733-15575752 None:intergenic 35.0%
TAATTTATCCTGCTCTTCAC+TGG - chr4.4:15578818-15578837 None:intergenic 35.0%
TACATGTCTTAAGCTTGTAG+AGG - chr4.4:15577947-15577966 None:intergenic 35.0%
TGCATTGAATTTCGACCAAA+TGG - chr4.4:15576461-15576480 None:intergenic 35.0%
TGGCGCATAAACACAAAATA+GGG - chr4.4:15575072-15575091 None:intergenic 35.0%
TTAAGTGCAGTGCAGATATA+AGG - chr4.4:15578626-15578645 None:intergenic 35.0%
TTGGCGCATAAACACAAAAT+AGG - chr4.4:15575073-15575092 None:intergenic 35.0%
TTTAACACTTTCCTGCCAAA+GGG + chr4.4:15575996-15576015 MS.gene023410:CDS 35.0%
! AATTCAACTGTTTTCTTCGG+AGG - chr4.4:15576059-15576078 None:intergenic 35.0%
! CATCATTGGTTGTCAATTTC+TGG - chr4.4:15575704-15575723 None:intergenic 35.0%
! CTATAAGAGTGTGATTGTGA+TGG + chr4.4:15576904-15576923 MS.gene023410:intron 35.0%
! GAAGAACAATACTGTGCTTT+TGG + chr4.4:15578688-15578707 MS.gene023410:CDS 35.0%
! GCATTTTGTGTATGAAGCTA+TGG + chr4.4:15575609-15575628 MS.gene023410:intron 35.0%
! GGATCATTGGTTAAAGTGAA+TGG + chr4.4:15575416-15575435 MS.gene023410:intron 35.0%
! TTTTTACAGAAGCCTAACCA+TGG - chr4.4:15577495-15577514 None:intergenic 35.0%
!! ATATTTTTGTTCTTCCGGGA+AGG + chr4.4:15577789-15577808 MS.gene023410:intron 35.0%
!! ATTGGGTTTGAGTTGGATTA+TGG + chr4.4:15576628-15576647 MS.gene023410:intron 35.0%
!! GATTTGTAGCTTTAATCGGT+TGG + chr4.4:15576166-15576185 MS.gene023410:intron 35.0%
!! GGTCACAACCATTTGATTTT+TGG + chr4.4:15575972-15575991 MS.gene023410:CDS 35.0%
!! TCTAGTTCTTGCTGTTACTA+AGG + chr4.4:15577676-15577695 MS.gene023410:CDS 35.0%
!! TGATACTGACTTGGTTAAAC+AGG + chr4.4:15577920-15577939 MS.gene023410:CDS 35.0%
!! TGTTGCATTCTGATTTTGGT+TGG + chr4.4:15578432-15578451 MS.gene023410:intron 35.0%
!! TTGATTATTGTGGCTTTGTC+TGG + chr4.4:15577549-15577568 MS.gene023410:CDS 35.0%
!!! ATAGGCTAGCTTTTTTGACA+TGG + chr4.4:15578323-15578342 MS.gene023410:intron 35.0%
ACGTGATGATTACACTGAAG+TGG - chr4.4:15578725-15578744 None:intergenic 40.0%
AGAGAAAGACAAAACCTTCC+CGG - chr4.4:15577806-15577825 None:intergenic 40.0%
AGATCCTAGCTAATTACAGG+TGG + chr4.4:15577004-15577023 MS.gene023410:intron 40.0%
ATCACCACATGATGAACCAA+AGG - chr4.4:15574965-15574984 None:intergenic 40.0%
ATGATACCAGAGGAATGTAG+AGG - chr4.4:15577360-15577379 None:intergenic 40.0%
ATGTAAGATTGGAGGTGAGT+GGG + chr4.4:15577613-15577632 MS.gene023410:CDS 40.0%
CAATAGGAGATACGTGTTTC+AGG + chr4.4:15578769-15578788 MS.gene023410:CDS 40.0%
CGAGGTCATGAAAGATTTCA+AGG + chr4.4:15575791-15575810 MS.gene023410:CDS 40.0%
CTGAAACACGTATCTCCTAT+TGG - chr4.4:15578771-15578790 None:intergenic 40.0%
GATAACACTTGATGAGGATG+AGG + chr4.4:15576025-15576044 MS.gene023410:CDS 40.0%
GGAAGTGAAAGACATGTTTC+AGG + chr4.4:15575740-15575759 MS.gene023410:CDS 40.0%
TATGTAAGATTGGAGGTGAG+TGG + chr4.4:15577612-15577631 MS.gene023410:CDS 40.0%
TCACCACATGATGAACCAAA+GGG - chr4.4:15574964-15574983 None:intergenic 40.0%
TCCACAAATACATGCACACA+AGG - chr4.4:15575501-15575520 None:intergenic 40.0%
TCCTTGTGTGCATGTATTTG+TGG + chr4.4:15575497-15575516 MS.gene023410:intron 40.0%
TCTCAATTCAAACGACCCTT+TGG + chr4.4:15574946-15574965 MS.gene023410:CDS 40.0%
TCTCTGGTATGTAAGATTGG+AGG + chr4.4:15577605-15577624 MS.gene023410:CDS 40.0%
TGAAATCTTTCATGACCTCG+AGG - chr4.4:15575791-15575810 None:intergenic 40.0%
TGATACCAGAGGAATGTAGA+GGG - chr4.4:15577359-15577378 None:intergenic 40.0%
TGTGTATGAAGCTATGGTCA+AGG + chr4.4:15575615-15575634 MS.gene023410:intron 40.0%
TTATCTCATATCCCTTTGGC+AGG - chr4.4:15576010-15576029 None:intergenic 40.0%
TTATTCCCTCTACATTCCTC+TGG + chr4.4:15577351-15577370 MS.gene023410:intron 40.0%
TTTCAAACCAGATACTCCCA+TGG + chr4.4:15578461-15578480 MS.gene023410:intron 40.0%
! ACAATACTGTGCTTTTGGTG+AGG + chr4.4:15578693-15578712 MS.gene023410:CDS 40.0%
! AGTTTATTGGTGTTCTGGGT+AGG + chr4.4:15577051-15577070 MS.gene023410:intron 40.0%
! ATCTATCTGCGATTTGTTCG+TGG + chr4.4:15577716-15577735 MS.gene023410:CDS 40.0%
! ATTGGTTGTCAATTTCTGGG+AGG - chr4.4:15575700-15575719 None:intergenic 40.0%
! GTTTATTGGTGTTCTGGGTA+GGG + chr4.4:15577052-15577071 MS.gene023410:intron 40.0%
! TTTTACTTGGGTCATGAGAC+AGG + chr4.4:15577163-15577182 MS.gene023410:intron 40.0%
!! GAAGGTGCTGAAGAATTATC+TGG - chr4.4:15576425-15576444 None:intergenic 40.0%
!! TCTTGCTGTTACTAAGGAGA+GGG + chr4.4:15577682-15577701 MS.gene023410:CDS 40.0%
!! TTCTTGCTGTTACTAAGGAG+AGG + chr4.4:15577681-15577700 MS.gene023410:CDS 40.0%
!!! GCTACCCTTTTTAAGTCACA+TGG + chr4.4:15576368-15576387 MS.gene023410:CDS 40.0%
AAAATGGGGGTTGACTGTTG+AGG - chr4.4:15578220-15578239 None:intergenic 45.0%
AAATGGGGGTTGACTGTTGA+GGG - chr4.4:15578219-15578238 None:intergenic 45.0%
AACCAGATACTCCCATGGTT+TGG + chr4.4:15578466-15578485 MS.gene023410:intron 45.0%
ACTAACCTGCGTGCTTTGTA+AGG - chr4.4:15577644-15577663 None:intergenic 45.0%
AGATACTCTCCATCATCGCA+TGG - chr4.4:15577743-15577762 None:intergenic 45.0%
GCTCTAACCAATTACTTCCC+CGG + chr4.4:15577107-15577126 MS.gene023410:intron 45.0%
GCTGACAAAAGCCAAACCAT+GGG - chr4.4:15578480-15578499 None:intergenic 45.0%
GGCTATCCAAATTCCACTCT+TGG + chr4.4:15578124-15578143 MS.gene023410:intron 45.0%
GTGTTTGTGAAGCCCATTGA+CGG + chr4.4:15578743-15578762 MS.gene023410:CDS 45.0%
GTTCTAGTGCACACTGGAAA+AGG - chr4.4:15577893-15577912 None:intergenic 45.0%
TACTTGCATTTGCCGCATCA+CGG - chr4.4:15576513-15576532 None:intergenic 45.0%
TCCACCACCTGTAATTAGCT+AGG - chr4.4:15577011-15577030 None:intergenic 45.0%
TCCTAGCTAATTACAGGTGG+TGG + chr4.4:15577007-15577026 MS.gene023410:intron 45.0%
TGCTGACAAAAGCCAAACCA+TGG - chr4.4:15578481-15578500 None:intergenic 45.0%
TGTAAGATTGGAGGTGAGTG+GGG + chr4.4:15577614-15577633 MS.gene023410:CDS 45.0%
TGTGCAAGTAGACAAGTCTC+TGG + chr4.4:15577589-15577608 MS.gene023410:CDS 45.0%
TTCCAGTGTGCACTAGAACT+TGG + chr4.4:15577894-15577913 MS.gene023410:intron 45.0%
TTGATCATGCCAGATGCGAA+TGG + chr4.4:15578537-15578556 MS.gene023410:intron 45.0%
! TGCTGCAATAAAGTGCCAAC+AGG - chr4.4:15577139-15577158 None:intergenic 45.0%
!! ACACTACTGGTGTCATAGCA+AGG + chr4.4:15575931-15575950 MS.gene023410:CDS 45.0%
!! ACTTGGTGGTGATACTGACT+TGG + chr4.4:15577911-15577930 MS.gene023410:CDS 45.0%
!! CACTACTGGTGTCATAGCAA+GGG + chr4.4:15575932-15575951 MS.gene023410:CDS 45.0%
!! CTGCACTGCACTTAAGTTGA+AGG + chr4.4:15578631-15578650 MS.gene023410:CDS 45.0%
!! TGGTGTCATAGCAAGGGTTA+AGG + chr4.4:15575938-15575957 MS.gene023410:CDS 45.0%
!!! ATCTTAATATTATTTATTTT+TGG + chr4.4:15575893-15575912 MS.gene023410:intron 5.0%
AAGTGCCAACAGGAAGCAAC+CGG - chr4.4:15577129-15577148 None:intergenic 50.0%
AATGGAGCATGCTGTGTGGA+AGG - chr4.4:15576443-15576462 None:intergenic 50.0%
ACCAAATGGAGCATGCTGTG+TGG - chr4.4:15576447-15576466 None:intergenic 50.0%
ACTTGCATTTGCCGCATCAC+GGG - chr4.4:15576512-15576531 None:intergenic 50.0%
CAATGCAGCGCTTCAATGAG+CGG + chr4.4:15576474-15576493 MS.gene023410:CDS 50.0%
CAGTGTGCACTAGAACTTGG+TGG + chr4.4:15577897-15577916 MS.gene023410:intron 50.0%
CTCACATCTCCATTCGCATC+TGG - chr4.4:15578549-15578568 None:intergenic 50.0%
CTCCTATTGGCACCGTCAAT+GGG - chr4.4:15578758-15578777 None:intergenic 50.0%
CTGGACAACGAATGAGATGC+TGG - chr4.4:15578799-15578818 None:intergenic 50.0%
CTTCTATGACACCCGTGATG+CGG + chr4.4:15576498-15576517 MS.gene023410:CDS 50.0%
GAAGCAACCGGGGAAGTAAT+TGG - chr4.4:15577117-15577136 None:intergenic 50.0%
GAATGCCTTACAAAGCACGC+AGG + chr4.4:15577636-15577655 MS.gene023410:CDS 50.0%
GCGGCAAATGCAAGTAGACA+AGG + chr4.4:15576517-15576536 MS.gene023410:CDS 50.0%
GTTTCCAGGACTGACACTAC+TGG + chr4.4:15575918-15575937 MS.gene023410:intron 50.0%
TACAGAAGCCTAACCATGGC+AGG - chr4.4:15577491-15577510 None:intergenic 50.0%
TCCACACAGCATGCTCCATT+TGG + chr4.4:15576443-15576462 MS.gene023410:CDS 50.0%
TCTCCTATTGGCACCGTCAA+TGG - chr4.4:15578759-15578778 None:intergenic 50.0%
TTCGTTGTCCAGTGAAGAGC+AGG + chr4.4:15578807-15578826 MS.gene023410:CDS 50.0%
TTGTCAGCATGCATTGCGCT+TGG + chr4.4:15578492-15578511 MS.gene023410:CDS 50.0%
! CACCAAGTTCTAGTGCACAC+TGG - chr4.4:15577899-15577918 None:intergenic 50.0%
! CGACCCTTTGGTTCATCATG+TGG + chr4.4:15574958-15574977 MS.gene023410:CDS 50.0%
!! AGCCAAACCATGGGAGTATC+TGG - chr4.4:15578471-15578490 None:intergenic 50.0%
AGTGCCAACAGGAAGCAACC+GGG - chr4.4:15577128-15577147 None:intergenic 55.0%
AGTTAACGGAGGAGGAGGTG+GGG + chr4.4:15575665-15575684 MS.gene023410:CDS 55.0%
GACACCAGTAGTGTCAGTCC+TGG - chr4.4:15575925-15575944 None:intergenic 55.0%
GAGTTAACGGAGGAGGAGGT+GGG + chr4.4:15575664-15575683 MS.gene023410:CDS 55.0%
GATGGAGTTAACGGAGGAGG+AGG + chr4.4:15575660-15575679 MS.gene023410:CDS 55.0%
GGAGATGGAGTTAACGGAGG+AGG + chr4.4:15575657-15575676 MS.gene023410:CDS 55.0%
GTTCGTGGACCATGCGATGA+TGG + chr4.4:15577731-15577750 MS.gene023410:CDS 55.0%
TGAAGCTATGGTCAAGGCCC+CGG + chr4.4:15575621-15575640 MS.gene023410:intron 55.0%
TTTCAACGCAGCTCCTGCCA+TGG + chr4.4:15577475-15577494 MS.gene023410:intron 55.0%
! AGCCCATTGACGGTGCCAAT+AGG + chr4.4:15578753-15578772 MS.gene023410:CDS 55.0%
!! GGTGGCGGAGATGGAGTTAA+CGG + chr4.4:15575651-15575670 MS.gene023410:CDS 55.0%
ACGCAGCTCCTGCCATGGTT+AGG + chr4.4:15577480-15577499 MS.gene023410:intron 60.0%
CTTCCCCGGTTGCTTCCTGT+TGG + chr4.4:15577121-15577140 MS.gene023410:intron 60.0%
GGAGTTAACGGAGGAGGAGG+TGG + chr4.4:15575663-15575682 MS.gene023410:CDS 60.0%
GGCGGAGATGGAGTTAACGG+AGG + chr4.4:15575654-15575673 MS.gene023410:CDS 60.0%
GTGCCAACAGGAAGCAACCG+GGG - chr4.4:15577127-15577146 None:intergenic 60.0%
GTTAACGGAGGAGGAGGTGG+GGG + chr4.4:15575666-15575685 MS.gene023410:CDS 60.0%
AGCTATGGTCAAGGCCCCGG+AGG + chr4.4:15575624-15575643 MS.gene023410:intron 65.0%
TATGGTCAAGGCCCCGGAGG+TGG + chr4.4:15575627-15575646 MS.gene023410:CDS 65.0%
ATCTCCGCCACCGCCACCTC+CGG - chr4.4:15575643-15575662 None:intergenic 70.0%
GGTCAAGGCCCCGGAGGTGG+CGG + chr4.4:15575630-15575649 MS.gene023410:CDS 75.0%
TCTCCGCCACCGCCACCTCC+GGG - chr4.4:15575642-15575661 None:intergenic 75.0%
!! GGAGGTGGCGGTGGCGGAGA+TGG + chr4.4:15575642-15575661 MS.gene023410:CDS 75.0%
! CTCCGCCACCGCCACCTCCG+GGG - chr4.4:15575641-15575660 None:intergenic 80.0%
!! CAAGGCCCCGGAGGTGGCGG+TGG + chr4.4:15575633-15575652 MS.gene023410:CDS 80.0%
!! GGCCCCGGAGGTGGCGGTGG+CGG + chr4.4:15575636-15575655 MS.gene023410:CDS 85.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 15574922 15578838 15574922 ID=MS.gene023410
chr4.4 mRNA 15574922 15578838 15574922 ID=MS.gene023410.t1;Parent=MS.gene023410
chr4.4 exon 15574922 15574986 15574922 ID=MS.gene023410.t1.exon1;Parent=MS.gene023410.t1
chr4.4 CDS 15574922 15574986 15574922 ID=cds.MS.gene023410.t1;Parent=MS.gene023410.t1
chr4.4 exon 15575626 15575820 15575626 ID=MS.gene023410.t1.exon2;Parent=MS.gene023410.t1
chr4.4 CDS 15575626 15575820 15575626 ID=cds.MS.gene023410.t1;Parent=MS.gene023410.t1
chr4.4 exon 15575926 15576112 15575926 ID=MS.gene023410.t1.exon3;Parent=MS.gene023410.t1
chr4.4 CDS 15575926 15576112 15575926 ID=cds.MS.gene023410.t1;Parent=MS.gene023410.t1
chr4.4 exon 15576365 15576538 15576365 ID=MS.gene023410.t1.exon4;Parent=MS.gene023410.t1
chr4.4 CDS 15576365 15576538 15576365 ID=cds.MS.gene023410.t1;Parent=MS.gene023410.t1
chr4.4 exon 15577530 15577769 15577530 ID=MS.gene023410.t1.exon5;Parent=MS.gene023410.t1
chr4.4 CDS 15577530 15577769 15577530 ID=cds.MS.gene023410.t1;Parent=MS.gene023410.t1
chr4.4 exon 15577900 15577989 15577900 ID=MS.gene023410.t1.exon6;Parent=MS.gene023410.t1
chr4.4 CDS 15577900 15577989 15577900 ID=cds.MS.gene023410.t1;Parent=MS.gene023410.t1
chr4.4 exon 15578472 15578521 15578472 ID=MS.gene023410.t1.exon7;Parent=MS.gene023410.t1
chr4.4 CDS 15578472 15578521 15578472 ID=cds.MS.gene023410.t1;Parent=MS.gene023410.t1
chr4.4 exon 15578613 15578838 15578613 ID=MS.gene023410.t1.exon8;Parent=MS.gene023410.t1
chr4.4 CDS 15578613 15578838 15578613 ID=cds.MS.gene023410.t1;Parent=MS.gene023410.t1
Gene Sequence

>MS.gene023410

ATGAAGAGGGCTAGAGATGGTATTTCTCAATTCAAACGACCCTTTGGTTCATCATGTGGTGATTCGTATGTTTTTCGTATGTTTTTTGATCTTGAATTTATTGATATTATAATTTGAATTTGAAATTTTGATTTTGGTATTTTTATGCCCTATTTTGTGTTTATGCGCCAATTTTGTTTTTTCAGTCTTTGGGATTAGTTTTGTGCCCTAATTTTGTGTTTCACTGTTCAATTGTTGAATTTGAATTCATATACTTATGTCTATTTCACTCGTGGTGTGAAATTGTTGTTGAATTTCATTAGGATTATGTTTGATTTGAATTTAATTTGATTTGGAATTAGTTTTGTGCCCTAATTTTGTGTTTCACTGTTGAATTTTAAATTTTGAATTCATATACTTATATCTATCTCACTTGTGGTGTTTAATTGTTGTTGAATTTCATTAGGGTTATGTTTCATTTGAGTTTAAATTGATTTTGGAGTTGTTGTATAATGGGATCATTGGTTAAAGTGAATGGAATTGTTGTATGAAACTTACTAGGCAAGTAATACGAGTAATGTTGAAAATTGAAGAACTCCTTGTGTGCATGTATTTGTGGATTGAAGAATATTATGAATTTTGATAGTGTTGTAGGTTGTGATTAGCATGTTGTAGTTGTTGATATTTAGGGTTTCTGAAATTGTGATTGCATTTTGTGTATGAAGCTATGGTCAAGGCCCCGGAGGTGGCGGTGGCGGAGATGGAGTTAACGGAGGAGGAGGTGGGGGAGCAATTACCTCCCAGAAATTGACAACCAATGATGCTTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCAGGATCAAAAAGAAAAATATGACATGTTCCTCGAGGTCATGAAAGATTTCAAGGCTCAAAAGTATGTTCTTAAACATTTGTACGTTTTGTAATGATTTTGAATGACGGAACATTGTGCCTAAACAATCAAGGGATCTTAATATTATTTATTTTTGGCTGTTTCCAGGACTGACACTACTGGTGTCATAGCAAGGGTTAAGGAACTATTCAAAGGTCACAACCATTTGATTTTTGGATTTAACACTTTCCTGCCAAAGGGATATGAGATAACACTTGATGAGGATGAGGACGAAGCTCCTCCGAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTCTGAACAAGATAAAGGTAATGTACTTTATTTTCCATTACAGTTACTGAGTTAGTTTGCTGATATAATTGATTTGTAGCTTTAATCGGTTGGTTTTTCTGCTACAGAAACGTTTCCAAAATGATGAACATGTTTACAAATCATTTTTGGACATTTTGAACATGTATCGCAAAGAGCACAAGACCATTTGAACATGCTTTCTTTTTTCTAATTTTGTTCGTTTAAAAACATTGGTTGAAATGTTTATTTTTTTAAATAAAAAACTCTAGGTTGCTACCCTTTTTAAGTCACATGGAGATTTGCTCGATGAGTTCACTAGATTCTTGCCAGATAATTCTTCAGCACCTTCCACACAGCATGCTCCATTTGGTCGAAATTCAATGCAGCGCTTCAATGAGCGGACTTCTATGACACCCGTGATGCGGCAAATGCAAGTAGACAAGGTAGTTAGAGCCTTCCTCTTCATAACAAATTTTTTACTTTTTGAAAGAAAAGAACATTGTCATAAAAATTTATGCTGCAATTCTTTTAAATTGGGTTTGAGTTGGATTATGGTATAGGTTTCGGATACATCAATAGATTTACAATAACCTGAATCTTTCATGATATGTAATTTATGGAGTCATGTTCGTGTTATTTTTGGTTGTTAGTGTGTATCATTTTTTGTCATATGTTTGATTGAAGAAATTCTTCAACTATTAAGTTAATTTCAATTTTCAATTAATTTATAGGGCCGTATTATTTTGAAAATCTTTGTTGGACATGGCATTATTAAACATAAGGTTCAAATGTTTACTATAAGGTTCTTCTATAAGAGTGTGATTGTGATGGTCACAAGTGCTGCTTTGAGTTTTGTTATGAATTTTGAGGCCTTAATTTTGGAATTAATTGATTGAAATTATTGTTATAGATCCTAGCTAATTACAGGTGGTGGAGAAGAGAACAATCTTAGTTTAGTTTATTGGTGTTCTGGGTAGGGAAGTTGTCAACTTTATGAGTAAATTTTTGGTGGCTCTAACCAATTACTTCCCCGGTTGCTTCCTGTTGGCACTTTATTGCAGCAATGATTTTACTTGGGTCATGAGACAGGAGACTTCATTGTATATGATCATCATGATAATGTAGTAGTTAAAGAAACAAATAATTTCATGGTTTTCTTTAAGTACAAGGTTAGCATGATTTGTACTTCTTCTTGCACTGTGATTCCTAAAACATATCTTTTCCAGTCAGTCAATTTGTGATATGTATTTCTTTTTTATTCCCTCTACATTCCTCTGGTATCATTTATGTACATGGCTAATCTCTTCTTTGTCTATGTTTTTTGTGTTAGTACGTACTTGACAATCATCATCAAAACTGTTAATGGTTTTTTTTATTGTTTTCAACGCAGCTCCTGCCATGGTTAGGCTTCTGTAAAAAACATTGTCTCATCAGCTAACTGAGATCACTTTCATTGATTATTGTGGCTTTGTCTGGAAGTGTGATTTTGAATTTGTGCAAGTAGACAAGTCTCTGGTATGTAAGATTGGAGGTGAGTGGGGAATGCCTTACAAAGCACGCAGGTTAGTCGAATGTCAATGTCTAGTTCTTGCTGTTACTAAGGAGAGGGATAATAATATGATCTATCTGCGATTTGTTCGTGGACCATGCGATGATGGAGAGTATCTTAGTTCTGTGAATAACCATATGATCTATATTTTTGTTCTTCCGGGAAGGTTTTGTCTTTCTCTCTAGCATCGTCAATTTTTTATTATTTGGTTCTGGTATGTTGGATATATTCTATGACATTAATGTCCTTTTCCAGTGTGCACTAGAACTTGGTGGTGATACTGACTTGGTTAAACAGGACCTCTACAAGCTTAAGACATGTATGGTTGAGTTTGAAGTTGAGACTGTGAGTTGTTTTCTTTTCTCTCATATGCAGATACATAAAATGATATATTATCATTTTAAAGTCTTCTAAATTAGTTTAGGTCAGTTTAAGAATGATGTGATGAATTATCTTTCAGTTGTTTCAATTTTGATTTCGGCTATCCAAATTCCACTCTTGGTTTATATTAAGGTGACAGTTACTTGCCCATCAAGTAATAAATGTAACTTGCTTATATGTCTTGGGTTATCCCTCAACAGTCAACCCCCATTTTTTTCATGTGTATCTATTTAACTTGGTTGTGTTATGAGTATCCTATCAAAGATATAGACAGGCTATTTTATTTGTTATTACTATATAGGCTAGCTTTTTTGACATGGTAGTATATCATTTGTCAGGCTATTTTCTTTGGTATTCGTTGTATTTAAATTTTTGAATGGAGGATGATATTGCAGATGCTCTTAATTGTTGCATTCTGATTTTGGTTGGTTGTTATTTCAAACCAGATACTCCCATGGTTTGGCTTTTGTCAGCATGCATTGCGCTTGGAAGATAAGTATGCTAACTATTGTTGATCATGCCAGATGCGAATGGAGATGTGAGTTGAAATTTATGAAAAAAAACAAGAAGCTGTTTTGCATAATTAGAGGAGATTGGCCTTATATCTGCACTGCACTTAAGTTGAAGGAAGAATATGTTGTGAAGTTTGCTGCTCCTGAAGAGAAGAACAATACTGTGCTTTTGGTGAGGCATACACCACTTCAGTGTAATCATCACGTGTTTGTGAAGCCCATTGACGGTGCCAATAGGAGATACGTGTTTCAGGTTAACCAGCATCTCATTCGTTGTCCAGTGAAGAGCAGGATAAATTAG
Protein sequence

>MS.gene023410.t1

MKRARDGISQFKRPFGSSCGDSYGQGPGGGGGGDGVNGGGGGGAITSQKLTTNDALSYLKEVKDMFQDQKEKYDMFLEVMKDFKAQKTDTTGVIARVKELFKGHNHLIFGFNTFLPKGYEITLDEDEDEAPPKKTVEFEEAISFLNKIKVATLFKSHGDLLDEFTRFLPDNSSAPSTQHAPFGRNSMQRFNERTSMTPVMRQMQVDKLTEITFIDYCGFVWKCDFEFVQVDKSLVCKIGGEWGMPYKARRLVECQCLVLAVTKERDNNMIYLRFVRGPCDDGEYLSSCALELGGDTDLVKQDLYKLKTCMVEFEVETILPWFGFCQHALRLEDKGDWPYICTALKLKEEYVVKFAAPEEKNNTVLLVRHTPLQCNHHVFVKPIDGANRRYVFQVNQHLIRCPVKSRIN