AlfalfaGEDB | MS.gene023425

M. sativa cultivar XinJiangDaYe / MS.gene023425

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0097159 GO:0110165 GO:1901363
PFAM: PF03110.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023425.t1	KEH20604.1	90	399	38	1	1	399	1	397	2.20E-204	721.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023425.t1	A2YGR5	40.8	287	149	6	72	338	119	404	1.2e-44	182.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023425.t1	A0A072TSV9	90.0	399	38	1	1	399	1	397	1.6e-204	721.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene023425.t1	TF	SBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023425.t1	MTR_8g080680	89.975	399	38	1	1	399	1	397	0.0	736
MS.gene023425.t1	MTR_8g080670	63.318	428	93	3	1	382	1	410	1.05e-171	486
MS.gene023425.t1	MTR_8g080690	67.454	381	98	5	1	360	1	376	1.19e-170	482
MS.gene023425.t1	MTR_3g085180	46.712	441	183	8	1	402	1	428	6.60e-111	332
MS.gene023425.t1	MTR_1g053715	33.645	321	169	11	80	385	18	309	2.18e-34	130
MS.gene023425.t1	MTR_7g092930	35.798	257	136	6	85	332	17	253	5.69e-34	129
MS.gene023425.t1	MTR_7g444860	43.312	157	72	4	50	206	82	221	1.18e-30	120
MS.gene023425.t1	MTR_3g099080	45.113	133	71	1	113	245	77	207	2.60e-30	120
MS.gene023425.t1	MTR_8g463140	63.158	76	28	0	131	206	62	137	1.54e-29	113
MS.gene023425.t1	MTR_4g088555	67.105	76	25	0	131	206	60	135	2.32e-29	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023425.t1	AT1G27370	40.000	265	144	8	77	332	119	377	5.44e-45	160
MS.gene023425.t1	AT1G27370	40.000	265	144	8	77	332	119	377	5.44e-45	160
MS.gene023425.t1	AT1G27370	40.000	265	144	8	77	332	119	377	5.44e-45	160
MS.gene023425.t1	AT1G27370	40.000	265	144	8	77	332	119	377	5.44e-45	160
MS.gene023425.t1	AT1G27370	40.000	265	144	8	77	332	119	377	5.44e-45	160
MS.gene023425.t1	AT1G27370	40.000	265	144	8	77	332	119	377	5.44e-45	160
MS.gene023425.t1	AT1G27370	58.779	131	52	2	77	206	119	248	1.50e-43	155
MS.gene023425.t1	AT5G43270	61.194	134	50	2	74	206	109	241	2.86e-42	154
MS.gene023425.t1	AT5G43270	61.194	134	50	2	74	206	109	241	2.86e-42	154
MS.gene023425.t1	AT5G43270	61.194	134	50	2	74	206	109	241	2.86e-42	154

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Find 76 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATCTATAACCACCAT+GGG	0.608088	4.2:-14064274	None:intergenic
AACATTCATGTTAACCCAGC+TGG	0.488020	4.2:-14065973	None:intergenic
AACTTTCAAATCACAATGCA+AGG	0.545524	4.2:+14064566	MS.gene023425:CDS
AAGTCATGCCAAATCTCCCA+TGG	0.638950	4.2:+14064258	MS.gene023425:CDS
AATATCTCCCTCTTCACAGT+TGG	0.605827	4.2:+14063802	MS.gene023425:CDS
AATATGTCAATTCCAACATG+TGG	0.594822	4.2:+14065876	MS.gene023425:CDS
ACAACCACCAAACTGGAGTA+TGG	0.348781	4.2:+14063883	MS.gene023425:CDS
ACAACCCGAAATTGATTTCT+CGG	0.376943	4.2:-14063913	None:intergenic
ACAATGTCCACCACGCTGCC+AGG	0.516200	4.2:+14064171	MS.gene023425:CDS
ACATTGTAAGTTCTGACCAT+TGG	0.517425	4.2:-14064155	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCTTGAGTAAATAAGC+AGG	-	chr4.2:14064856-14064875	None:intergenic	30.0%
AAATGAACAGAACTTACAAG+AGG	-	chr4.2:14064954-14064973	None:intergenic	30.0%
AACTTTCAAATCACAATGCA+AGG	+	chr4.2:14064566-14064585	MS.gene023425:CDS	30.0%
AATATGTCAATTCCAACATG+TGG	+	chr4.2:14065876-14065895	MS.gene023425:CDS	30.0%
CTTACAAGAGGTTAAAAGAT+AGG	-	chr4.2:14064942-14064961	None:intergenic	30.0%
GCAATGTTAATAGTCAACTA+AGG	-	chr4.2:14064779-14064798	None:intergenic	30.0%
GTGAATAAGATAAAGCTGAT+TGG	-	chr4.2:14064627-14064646	None:intergenic	30.0%
TTATCCTGATTGTTAGAGTT+TGG	+	chr4.2:14065116-14065135	MS.gene023425:intron	30.0%
TTCAAAGAACCTTATGAGTA+TGG	+	chr4.2:14065944-14065963	MS.gene023425:CDS	30.0%
AAACCATCTATAACCACCAT+GGG	-	chr4.2:14064277-14064296	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	14063788	14065985	14063788	ID=MS.gene023425
chr4.2	mRNA	14063788	14065985	14063788	ID=MS.gene023425.t1;Parent=MS.gene023425
chr4.2	exon	14063788	14064326	14063788	ID=MS.gene023425.t1.exon1;Parent=MS.gene023425.t1
chr4.2	CDS	14063788	14064326	14063788	ID=cds.MS.gene023425.t1;Parent=MS.gene023425.t1
chr4.2	exon	14064516	14064652	14064516	ID=MS.gene023425.t1.exon2;Parent=MS.gene023425.t1
chr4.2	CDS	14064516	14064652	14064516	ID=cds.MS.gene023425.t1;Parent=MS.gene023425.t1
chr4.2	exon	14065387	14065602	14065387	ID=MS.gene023425.t1.exon3;Parent=MS.gene023425.t1
chr4.2	CDS	14065387	14065602	14065387	ID=cds.MS.gene023425.t1;Parent=MS.gene023425.t1
chr4.2	exon	14065657	14065985	14065657	ID=MS.gene023425.t1.exon4;Parent=MS.gene023425.t1
chr4.2	CDS	14065657	14065985	14065657	ID=cds.MS.gene023425.t1;Parent=MS.gene023425.t1

Gene Sequence

>MS.gene023425

ATGGACTTGAATGCAATATCTCCCTCTTCACAGTTGGAGTTGGAATGGGATCACCTACCATTACTTAATACAAAAGCAACTGAAAACCCAAAATTACAACCACCAAACTGGAGTATGGAACTTGACCGAGAAATCAATTTCGGGTTGTATGATACACCCGGTGGAGGTGGTTCTTCTGGCTCTGAGTTAATTCATGGTTCAGCATTTAATCCACCAAACCTTTCTTGTGTATCTGGTGAACCATTGCTCAATCTAAGACTTGGTAAAAGGATGTATTTTGAGGAAGTTTGTCCAGAAAGTGATTCCAAAAATCTTTCTTTTTCAAGGGATCTCATGTCATCTTCAATTCTTGAAAAGAAATGCAAGTCCAATGGTCAGAACTTACAATGTCCACCACGCTGCCAGGTTGAAGGTTGTGCTCTTGATCTTTCATCCGCAAAAGATTATCATCGCAAACGAAGAGTTTGTGAAAGTCATGCCAAATCTCCCATGGTGGTTATAGATGGTTTGGAGCGTCGATTTTGCCAGCAATGTAGCAGGTAAAGCTTCTTAACAACTGTATAATTGTTTAGATCTAATTGACATAGAAAATAATAGTATTTTTTTCGAATGATGAATTCTTGTTAGCACATCATTAAAAGCTAATATTACTACTCAATCTAATTCTACTTGCTGTTGGTGTTGAATAAATTGCTCTAGAATTGATCACTTTTCTTAAAATGCTGAAGGTTCCATGATCTGTTTGAGTTTGATGGAAAGAAGAAAAGCTGCAGACGACAACTTTCAAATCACAATGCAAGGCGCCGTATATATCATCGTCAAGCTGTCCAATCAAGCCAATCAGCTTTATCTTATTCACGCAATGGTAATACTTATTTTTCTCTGATTTTGCAGTTTATCTCAGTTCATGCTTGTTATCTGTTTTTGATTGTTAAAGCTGAAAAAATGAAATGTAGAAATCTAAGAGGCTAAGACCATGTTATGCATGCCTTAGTTGACTATTAACATTGCTGAATGAAAACTGTTTGAAAAATTGAAATGCTTAACACCACTCTTCTTTGCTGTCCTGCTTATTTACTCAAGAGTTTGCCTTGCAAGTTACACGAGACATTAAATGTAATGCAACAGAACTTCTTAATTTTCTACAATTGCCTATCTTTTAACCTCTTGTAAGTTCTGTTCATTTTTCATTTATTTCATAGATCTTATTGGATTTTCAATCGTCATACATCTGGATGGTAAACATGATTAAACTTTTGAGTTGTGGACTAGATAGTTGATTTAGTTAAAGGCATAGCGTACTCTTGATTACAGAATTACACAAATCATTATCCTGATTGTTAGAGTTTGGACATGAGCGCGAGTATAACATTCCTAAGCCGAAGTATTTACTAACTAGATTTGTATGAGTATGCCATTCGTTAATACCTGGTTTAGTAAAAATACAACTTCAAATTGCTGTTAGTCAAAACTTAGACCAAAGAACATCCACTTTTGGTTGTTTCATAGGTTTATTATAGTTAATTGCAAGTCATTCATTTCTCAATGATTCAAATTTTACTGTTGTCTTCTATCTTCTAATATATTTTGGTTCTGCAGATGAGAAGCAACAGATGAGTCCATTTTCTAATTCCAAGACTGCTACAAATTTAGCCTGGCAAAACATGCACAACAGCAAGCTCCCCCAAGCAAAAGATTTTCCCTTGAAGCCTGCAAAAGACAACATTGACACACCAAGTACTGTCAATATGCTTTCTCATGATTCCAATTTCCATTTTACATCCAAAGTCCTTCCAACCAAGAGTATCAATCCAGGTTATTTCACGTTTATTGCCACATTTTTGTGCTGATTTTTTTTTACTCTTGCAGGTGTAGAAGATTTCATGAACTTTTCTGATACAAATGCTACACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACCAATCAGTGGGATTCATATGCGACTAAATCCATTTCTGAAGAACATTCTAATCGCTCGACCAGTGCTTTTCAAGCCATAACTCATGCAATGAATCAGCGCATTCCTCTTGCTTCATCAGAGCCATGGTGTAGTGATCATGATCAATATGTCAATTCCAACATGTGGATCTCAAACTCTGCAGATAGCAATCACTTTCAGAAATTTCAACTGTTCAAAGAACCTTATGAGTATGGTTTTCACCAGCTGGGTTAA

Protein sequence

>MS.gene023425.t1

MDLNAISPSSQLELEWDHLPLLNTKATENPKLQPPNWSMELDREINFGLYDTPGGGGSSGSELIHGSAFNPPNLSCVSGEPLLNLRLGKRMYFEEVCPESDSKNLSFSRDLMSSSILEKKCKSNGQNLQCPPRCQVEGCALDLSSAKDYHRKRRVCESHAKSPMVVIDGLERRFCQQCSRFHDLFEFDGKKKSCRRQLSNHNARRRIYHRQAVQSSQSALSYSRNDEKQQMSPFSNSKTATNLAWQNMHNSKLPQAKDFPLKPAKDNIDTPSTVNMLSHDSNFHFTSKVLPTKSINPGVEDFMNFSDTNATQDFTCALSLLSTNQWDSYATKSISEEHSNRSTSAFQAITHAMNQRIPLASSEPWCSDHDQYVNSNMWISNSADSNHFQKFQLFKEPYEYGFHQLG