AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023426

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023426.t1 MTR_8g080690 84.574 376 24 2 1 342 1 376 0.0 582
MS.gene023426.t1 MTR_8g080680 62.269 379 85 7 1 342 1 358 4.24e-150 428
MS.gene023426.t1 MTR_8g080670 56.436 404 98 8 1 342 1 388 2.59e-122 358
MS.gene023426.t1 MTR_3g085180 45.780 391 155 9 1 341 1 384 2.23e-91 280
MS.gene023426.t1 MTR_1g053715 37.945 253 119 7 105 322 25 274 6.00e-37 136
MS.gene023426.t1 MTR_7g092930 40.201 199 85 6 144 314 61 253 6.97e-33 125
MS.gene023426.t1 MTR_3g099080 52.252 111 52 1 151 261 98 207 1.95e-32 124
MS.gene023426.t1 MTR_8g463140 66.250 80 27 0 149 228 63 142 6.02e-32 118
MS.gene023426.t1 MTR_8g096780 39.796 196 100 6 137 328 85 266 6.04e-31 120
MS.gene023426.t1 MTR_2g078770 65.789 76 26 0 149 224 56 131 2.31e-30 114
MS.gene023426.t1 MTR_7g444860 46.405 153 70 4 99 242 98 247 6.74e-30 116
MS.gene023426.t1 MTR_4g109770 40.437 183 83 6 151 326 123 286 1.51e-29 118
MS.gene023426.t1 MTR_5g046670 56.977 86 37 0 149 234 242 327 3.30e-28 114
MS.gene023426.t1 MTR_7g028740 45.614 114 61 1 151 264 77 189 4.92e-28 112
MS.gene023426.t1 MTR_8g005960 64.103 78 28 0 149 226 185 262 9.57e-28 110
MS.gene023426.t1 MTR_4g088555 63.158 76 28 0 149 224 61 136 1.04e-27 106
MS.gene023426.t1 MTR_2g461920 55.556 90 40 0 137 226 157 246 1.08e-27 113
MS.gene023426.t1 MTR_1g035010 57.831 83 35 0 148 230 101 183 5.92e-27 112
MS.gene023426.t1 MTR_2g014200 56.250 80 35 0 149 228 62 141 7.90e-26 100
MS.gene023426.t1 MTR_1g086250 48.718 117 55 1 119 230 110 226 1.08e-25 108
MS.gene023426.t1 MTR_2g046550 58.974 78 32 0 151 228 139 216 1.38e-24 105
MS.gene023426.t1 MTR_7g110320 55.294 85 38 0 151 235 145 229 9.97e-24 102
MS.gene023426.t1 MTR_7g110320 55.294 85 38 0 151 235 145 229 1.13e-23 102
MS.gene023426.t1 MTR_2g020620 39.496 119 58 2 158 269 97 208 2.35e-18 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023426.t1 AT5G43270 38.281 384 175 16 1 333 1 373 1.46e-48 168
MS.gene023426.t1 AT5G43270 38.281 384 175 16 1 333 1 373 1.46e-48 168
MS.gene023426.t1 AT5G43270 38.281 384 175 16 1 333 1 373 1.46e-48 168
MS.gene023426.t1 AT1G27360 43.825 251 115 8 1 226 1 250 2.27e-47 165
MS.gene023426.t1 AT1G27360 43.825 251 115 8 1 226 1 250 2.27e-47 165
MS.gene023426.t1 AT1G27360 43.825 251 115 8 1 226 1 250 2.27e-47 165
MS.gene023426.t1 AT1G27360 43.825 251 115 8 1 226 1 250 2.27e-47 165
MS.gene023426.t1 AT1G27370 41.353 266 129 6 1 240 1 265 1.63e-45 159
MS.gene023426.t1 AT1G27370 41.353 266 129 6 1 240 1 265 9.41e-45 158
MS.gene023426.t1 AT1G27370 41.353 266 129 6 1 240 1 265 9.41e-45 158
MS.gene023426.t1 AT1G27370 41.353 266 129 6 1 240 1 265 9.41e-45 158
MS.gene023426.t1 AT1G27370 41.353 266 129 6 1 240 1 265 9.41e-45 158
MS.gene023426.t1 AT1G27370 41.353 266 129 6 1 240 1 265 9.41e-45 158
MS.gene023426.t1 AT1G27370 41.353 266 129 6 1 240 1 265 9.41e-45 158
MS.gene023426.t1 AT2G42200 54.955 111 45 2 148 258 71 176 7.77e-33 125
MS.gene023426.t1 AT1G69170 64.103 78 28 0 147 224 120 197 1.83e-29 117
MS.gene023426.t1 AT5G50670 57.143 84 36 0 147 230 97 180 1.84e-28 113
MS.gene023426.t1 AT5G50670 57.143 84 36 0 147 230 97 180 1.84e-28 113
MS.gene023426.t1 AT5G50570 57.143 84 36 0 147 230 97 180 1.84e-28 113
MS.gene023426.t1 AT5G50570 57.143 84 36 0 147 230 97 180 1.84e-28 113
MS.gene023426.t1 AT1G76580 55.914 93 41 0 148 240 111 203 2.99e-28 115
MS.gene023426.t1 AT1G76580 55.914 93 41 0 148 240 111 203 3.01e-28 115
MS.gene023426.t1 AT1G76580 55.914 93 41 0 148 240 111 203 4.33e-28 115
MS.gene023426.t1 AT1G02065 63.415 82 29 1 146 226 183 264 1.22e-27 110
MS.gene023426.t1 AT3G57920 40.351 171 85 5 150 304 58 227 1.71e-27 110
MS.gene023426.t1 AT2G33810 60.811 74 29 0 151 224 54 127 9.38e-27 103
MS.gene023426.t1 AT3G60030 55.814 86 38 0 151 236 127 212 1.44e-26 111
MS.gene023426.t1 AT1G20980 53.465 101 46 1 137 236 106 206 2.06e-26 110
MS.gene023426.t1 AT2G47070 61.538 78 30 0 151 228 106 183 1.54e-25 108
MS.gene023426.t1 AT1G53160 56.962 79 34 0 151 229 54 132 5.64e-25 99.8
MS.gene023426.t1 AT1G53160 56.962 79 34 0 151 229 54 132 7.56e-25 99.4
MS.gene023426.t1 AT1G53160 56.962 79 34 0 151 229 54 132 7.56e-25 99.4
MS.gene023426.t1 AT3G15270 56.757 74 32 0 151 224 63 136 6.54e-24 97.1
MS.gene023426.t1 AT5G18830 53.333 75 35 0 150 224 137 211 1.26e-20 93.6
MS.gene023426.t1 AT5G18830 53.333 75 35 0 150 224 137 211 1.30e-20 93.6
MS.gene023426.t1 AT5G18830 53.333 75 35 0 150 224 137 211 1.34e-20 93.6
MS.gene023426.t1 AT1G02065 58.929 56 23 0 143 198 180 235 1.51e-16 78.6
MS.gene023426.t1 AT2G47070 60.377 53 21 0 176 228 2 54 1.61e-13 72.0

Find 57 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTTGGTGGTTGTAATTT+TGG 0.089177 4.2:-14058945 None:intergenic
CAAATAGTTCATCGTCAAAT+AGG 0.221746 4.2:+14059066 MS.gene023426:CDS
TGACTTGATTGGAGTGCTTC+AGG 0.279073 4.2:-14059727 None:intergenic
CTCCCTCTTCCCAGTGGGAC+TGG 0.294118 4.2:+14058883 MS.gene023426:CDS
CTTGCGTCATCTTTAAGTAT+TGG 0.335589 4.2:+14059248 MS.gene023426:CDS
TATAACCACCATAGGAGATT+TGG 0.339545 4.2:-14059393 None:intergenic
AGCTTTACCTGCCACATTGC+TGG 0.352012 4.2:-14059439 None:intergenic
ACAAAACTGATTGACTTGAT+TGG 0.364968 4.2:-14059738 None:intergenic
TCCCTCTTCCCAGTGGGACT+GGG 0.389604 4.2:+14058884 MS.gene023426:CDS
CCAGAGCTTTCTTCTGTCTC+TGG 0.403530 4.2:+14059134 MS.gene023426:CDS
TCTCCTATGGTGGTTATAGA+TGG 0.407218 4.2:+14059398 MS.gene023426:CDS
ACAACCCGGCATTGATTTCT+CGG 0.409997 4.2:-14058983 None:intergenic
CTTGCAATTTCCGCGCTGCC+AGG 0.416641 4.2:+14059298 MS.gene023426:CDS
AAATAGTTCATCGTCAAATA+GGG 0.430475 4.2:+14059067 MS.gene023426:CDS
CGCTGCCAGGTTGAAGGTTG+TGG 0.443635 4.2:+14059311 MS.gene023426:CDS
TTTCCGCGCTGCCAGGTTGA+AGG 0.450558 4.2:+14059305 MS.gene023426:CDS
ATTGGTGCTCCCAGTCCCAC+TGG 0.471654 4.2:-14058893 None:intergenic
CTCCCAGTCCCACTGGGAAG+AGG 0.474118 4.2:-14058886 None:intergenic
TGTTTGATGCTCCAGCTTGG+TGG 0.481479 4.2:-14058957 None:intergenic
TTTATCATTTGTATCAGAAA+CGG 0.482839 4.2:-14060933 None:intergenic
CAAAATTACAACCACCAAGC+TGG 0.484604 4.2:+14058946 MS.gene023426:CDS
TATGGTGGTTATAGATGGTA+TGG 0.485704 4.2:+14059403 MS.gene023426:CDS
CTCTTCTGTCAACTAATCCA+TGG 0.493619 4.2:+14060978 MS.gene023426:CDS
GCAGTCTCTGAATTAGCAAA+TGG 0.494415 4.2:-14060688 None:intergenic
TCTTGTTTGATGCTCCAGCT+TGG 0.510678 4.2:-14058960 None:intergenic
AAGTCATTCCAAATCTCCTA+TGG 0.520495 4.2:+14059385 MS.gene023426:CDS
CTGACTCATTGCATGAGTTA+CGG 0.521872 4.2:-14061065 None:intergenic
AACTTTCACGTCACAATGCA+AGG 0.530580 4.2:+14059689 MS.gene023426:CDS
GAACCATTGCTCACTCTACT+CGG 0.540591 4.2:+14059158 MS.gene023426:CDS
CATGATTCTGATTAAACAAG+AGG 0.549250 4.2:-14061094 None:intergenic
CAAGACCGAGAAATCAATGC+CGG 0.550620 4.2:+14058978 MS.gene023426:CDS
TCCCAGTCCCACTGGGAAGA+GGG 0.552029 4.2:-14058885 None:intergenic
TCTTCTGTCAACTAATCCAT+GGG 0.562513 4.2:+14060979 MS.gene023426:CDS
CATCGAACTCAAACAGATCG+TGG 0.568188 4.2:-14059642 None:intergenic
GATAATCTTTCGCTGATGAA+AGG 0.568732 4.2:-14059340 None:intergenic
CCAGAGACAGAAGAAAGCTC+TGG 0.576248 4.2:-14059134 None:intergenic
ATTAGAATGTTCTAGAGACA+TGG 0.583823 4.2:-14061020 None:intergenic
AGTTACGGCTTGAACAGCAC+TGG 0.590790 4.2:-14061050 None:intergenic
CAAGGCCACAACCTTCAACC+TGG 0.591428 4.2:-14059316 None:intergenic
ACGGCTTGAACAGCACTGGT+TGG 0.597812 4.2:-14061046 None:intergenic
TTAGTCGCATATGAATCCCA+TGG 0.598308 4.2:-14060995 None:intergenic
GCCGGGTTGTTCGATACACC+TGG 0.605439 4.2:+14058996 MS.gene023426:CDS
AAGACCGAGAAATCAATGCC+GGG 0.606643 4.2:+14058979 MS.gene023426:CDS
AGACTGCTACAAATTTAGCC+TGG 0.607461 4.2:+14060704 MS.gene023426:CDS
ATACCATCTATAACCACCAT+AGG 0.609763 4.2:-14059401 None:intergenic
TTGGTGCTCCCAGTCCCACT+GGG 0.623897 4.2:-14058892 None:intergenic
TTTCCGAGTAGAGTGAGCAA+TGG 0.627280 4.2:-14059161 None:intergenic
CTTTCGCTGATGAAAGGTCA+AGG 0.632145 4.2:-14059334 None:intergenic
TTAGCCTGGCAAAACATGAA+CGG 0.633733 4.2:+14060718 MS.gene023426:CDS
AATATCTCCCTCTTCCCAGT+GGG 0.634960 4.2:+14058878 MS.gene023426:CDS
CAATATCTCCCTCTTCCCAG+TGG 0.638747 4.2:+14058877 MS.gene023426:CDS
TCATTCCAAATCTCCTATGG+TGG 0.656270 4.2:+14059388 MS.gene023426:CDS
CAACCTTCAACCTGGCAGCG+CGG 0.659706 4.2:-14059308 None:intergenic
CGGAAAACGAGTGTACATTG+AGG 0.675568 4.2:+14059178 MS.gene023426:CDS
GGGTTGTTCGATACACCTGG+TGG 0.681597 4.2:+14058999 MS.gene023426:CDS
AAAGACAACACTAACACACA+AGG 0.691256 4.2:+14060760 MS.gene023426:CDS
ACCAGGTGTATCGAACAACC+CGG 0.701562 4.2:-14058997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTTTTTTTTTTTT+TGG + chr4.2:14059505-14059524 MS.gene023426:intron 0.0%
!! AAATAATTATCATGATTGTT+TGG + chr4.2:14060373-14060392 MS.gene023426:intron 15.0%
!!! ATTCACTTTTAGTTTTTTAT+AGG + chr4.2:14060534-14060553 MS.gene023426:intron 15.0%
!!! GTTTATTGTAGTTTTTTTAT+AGG + chr4.2:14060556-14060575 MS.gene023426:intron 15.0%
!!! TTCTAACTTCTAATATATTT+TGG + chr4.2:14060637-14060656 MS.gene023426:intron 15.0%
!! ATAATTACTTATTGTCAGAA+AGG + chr4.2:14060236-14060255 MS.gene023426:intron 20.0%
!! TTTATCATTTGTATCAGAAA+CGG - chr4.2:14060936-14060955 None:intergenic 20.0%
!!! GTTGTTTTTTTTACAAAATC+AGG - chr4.2:14060475-14060494 None:intergenic 20.0%
!!! TTTAGTTTCATAGATCTTAT+TGG + chr4.2:14060080-14060099 MS.gene023426:intron 20.0%
! AAATAGTTCATCGTCAAATA+GGG + chr4.2:14059067-14059086 MS.gene023426:CDS 25.0%
! AACTAAAAGTGAATGTTCTT+TGG - chr4.2:14060528-14060547 None:intergenic 25.0%
! TGTTTCAATGTAATTGACAT+AGG + chr4.2:14059480-14059499 MS.gene023426:intron 25.0%
! TTGTATCATATGCCTTAATA+AGG - chr4.2:14060355-14060374 None:intergenic 25.0%
!! ATTGCTATATTTAGAGTTGT+GGG + chr4.2:14060261-14060280 MS.gene023426:intron 25.0%
!! TATTGCTATATTTAGAGTTG+TGG + chr4.2:14060260-14060279 MS.gene023426:intron 25.0%
!!! AAAACATGTATTTTTGCTTG+TGG + chr4.2:14059098-14059117 MS.gene023426:CDS 25.0%
!!! AGGTTTTTGGAATTACTTTT+CGG - chr4.2:14059212-14059231 None:intergenic 25.0%
!!! CAAAAACCTATCTTTTTCAA+GGG + chr4.2:14059223-14059242 MS.gene023426:CDS 25.0%
!!! CAAAATCAGGTTTTAAAGAA+TGG - chr4.2:14060462-14060481 None:intergenic 25.0%
AAACGTGAAATAACCTCAAT+TGG - chr4.2:14060855-14060874 None:intergenic 30.0%
AAAGCTGAAAAGATGAAATG+TGG + chr4.2:14059841-14059860 MS.gene023426:intron 30.0%
ACAAATCAGCACAAAAAATG+TGG - chr4.2:14060882-14060901 None:intergenic 30.0%
ATGAGCAGAACTAAAAAGAT+AGG - chr4.2:14060054-14060073 None:intergenic 30.0%
CAAATAGTTCATCGTCAAAT+AGG + chr4.2:14059066-14059085 MS.gene023426:CDS 30.0%
CAAGAACTTTGGATGTAAAA+TGG - chr4.2:14060819-14060838 None:intergenic 30.0%
GCAATGTTTATTGTCAACTA+AGG - chr4.2:14059891-14059910 None:intergenic 30.0%
TTTGGATGTAAAATGGACAA+CGG - chr4.2:14060812-14060831 None:intergenic 30.0%
! CCTAAGTCTTTAGAGAATTA+AGG + chr4.2:14060320-14060339 MS.gene023426:intron 30.0%
! CCTTAATTCTCTAAAGACTT+AGG - chr4.2:14060323-14060342 None:intergenic 30.0%
! CCTTGAAAAAGATAGGTTTT+TGG - chr4.2:14059225-14059244 None:intergenic 30.0%
! TAACCTCAATTGGATACTTT+TGG - chr4.2:14060845-14060864 None:intergenic 30.0%
! TGTTAGTGTTGTCTTTTGTT+TGG - chr4.2:14060756-14060775 None:intergenic 30.0%
!! ACAAAACTGATTGACTTGAT+TGG - chr4.2:14059741-14059760 None:intergenic 30.0%
!! ATTAGAATGTTCTAGAGACA+TGG - chr4.2:14061023-14061042 None:intergenic 30.0%
!! CCAAAAACCTATCTTTTTCA+AGG + chr4.2:14059222-14059241 MS.gene023426:CDS 30.0%
!! CTGATTTGTTATAACTTTGC+AGG + chr4.2:14060893-14060912 MS.gene023426:intron 30.0%
!! TCTGCTTGTTATCTATGTTT+GGG + chr4.2:14059814-14059833 MS.gene023426:intron 30.0%
!! TTCTGCTTGTTATCTATGTT+TGG + chr4.2:14059813-14059832 MS.gene023426:intron 30.0%
!!! AACTTGCTGTCTTTTTTGAA+TGG + chr4.2:14059587-14059606 MS.gene023426:intron 30.0%
AAACTCTTACGCAAATAAGC+AGG - chr4.2:14059968-14059987 None:intergenic 35.0%
AAAGACAACACTAACACACA+AGG + chr4.2:14060760-14060779 MS.gene023426:CDS 35.0%
AAGTCATTCCAAATCTCCTA+TGG + chr4.2:14059385-14059404 MS.gene023426:CDS 35.0%
ATACCATCTATAACCACCAT+AGG - chr4.2:14059404-14059423 None:intergenic 35.0%
CAACTAAGGTATGCATAACA+TGG - chr4.2:14059877-14059896 None:intergenic 35.0%
CAAGATCCCTTGAAAAAGAT+AGG - chr4.2:14059232-14059251 None:intergenic 35.0%
CTTGCGTCATCTTTAAGTAT+TGG + chr4.2:14059248-14059267 MS.gene023426:CDS 35.0%
GATAATCTTTCGCTGATGAA+AGG - chr4.2:14059343-14059362 None:intergenic 35.0%
GTTAGTAAAGACTTCAGCTT+AGG - chr4.2:14060421-14060440 None:intergenic 35.0%
GTTTACCTTGCAAGTTACAA+TGG + chr4.2:14059984-14060003 MS.gene023426:intron 35.0%
TATAACCACCATAGGAGATT+TGG - chr4.2:14059396-14059415 None:intergenic 35.0%
TATGGTGGTTATAGATGGTA+TGG + chr4.2:14059403-14059422 MS.gene023426:CDS 35.0%
TCTTCTGTCAACTAATCCAT+GGG + chr4.2:14060979-14060998 MS.gene023426:CDS 35.0%
TGAGGACTGGATATAGTTAA+AGG + chr4.2:14060285-14060304 MS.gene023426:intron 35.0%
TTATTTGCTTCGAATGCTGA+AGG + chr4.2:14059617-14059636 MS.gene023426:intron 35.0%
! AATGTCCATTGTAACTTGCA+AGG - chr4.2:14059992-14060011 None:intergenic 35.0%
! ATATTTAGAGTTGTGGGATG+AGG + chr4.2:14060267-14060286 MS.gene023426:intron 35.0%
! CTTTTGTGTGGAAGAATGAT+TGG - chr4.2:14058914-14058933 None:intergenic 35.0%
!! AACATGACTGTTACTTTGCA+TGG - chr4.2:14060209-14060228 None:intergenic 35.0%
!! ACTTTTGGTTGCAAGAACTT+TGG - chr4.2:14060830-14060849 None:intergenic 35.0%
!! CAACCAAAAGTATCCAATTG+AGG + chr4.2:14060839-14060858 MS.gene023426:intron 35.0%
!!! ATATATTTTGGTTCCGCAGA+TGG + chr4.2:14060649-14060668 MS.gene023426:intron 35.0%
!!! ATATTTTTGGCTCTGCATCA+AGG + chr4.2:14059027-14059046 MS.gene023426:CDS 35.0%
!!! GATTTTCAGTTGCTTTTGTG+TGG - chr4.2:14058926-14058945 None:intergenic 35.0%
AACTTTCACGTCACAATGCA+AGG + chr4.2:14059689-14059708 MS.gene023426:CDS 40.0%
AGACTGCTACAAATTTAGCC+TGG + chr4.2:14060704-14060723 MS.gene023426:CDS 40.0%
AGGTAGCGTACTCCTTATTA+AGG + chr4.2:14060340-14060359 MS.gene023426:intron 40.0%
CAAAATTACAACCACCAAGC+TGG + chr4.2:14058946-14058965 MS.gene023426:CDS 40.0%
CATACGTTTCGATGGTAAAG+AGG + chr4.2:14060115-14060134 MS.gene023426:intron 40.0%
CCAAAAATATCACTTCCACC+AGG - chr4.2:14059017-14059036 None:intergenic 40.0%
CTCTTCTGTCAACTAATCCA+TGG + chr4.2:14060978-14060997 MS.gene023426:CDS 40.0%
CTGACTCATTGCATGAGTTA+CGG - chr4.2:14061068-14061087 None:intergenic 40.0%
GCAGTCTCTGAATTAGCAAA+TGG - chr4.2:14060691-14060710 None:intergenic 40.0%
TCAACTGTCATACGTTTCGA+TGG + chr4.2:14060107-14060126 MS.gene023426:intron 40.0%
TCATTCCAAATCTCCTATGG+TGG + chr4.2:14059388-14059407 MS.gene023426:CDS 40.0%
TCTCCTATGGTGGTTATAGA+TGG + chr4.2:14059398-14059417 MS.gene023426:CDS 40.0%
TTAGCCTGGCAAAACATGAA+CGG + chr4.2:14060718-14060737 MS.gene023426:CDS 40.0%
TTAGTCGCATATGAATCCCA+TGG - chr4.2:14060998-14061017 None:intergenic 40.0%
! CCTGGTGGAAGTGATATTTT+TGG + chr4.2:14059014-14059033 MS.gene023426:CDS 40.0%
!! CAGCTTGGTGGTTGTAATTT+TGG - chr4.2:14058948-14058967 None:intergenic 40.0%
!! CTTTTGTTTGGAAGAGCTTG+CGG - chr4.2:14060744-14060763 None:intergenic 40.0%
AAGACCGAGAAATCAATGCC+GGG + chr4.2:14058979-14058998 MS.gene023426:CDS 45.0%
AATATCTCCCTCTTCCCAGT+GGG + chr4.2:14058878-14058897 MS.gene023426:CDS 45.0%
CAAGACCGAGAAATCAATGC+CGG + chr4.2:14058978-14058997 MS.gene023426:CDS 45.0%
CATCGAACTCAAACAGATCG+TGG - chr4.2:14059645-14059664 None:intergenic 45.0%
CGGAAAACGAGTGTACATTG+AGG + chr4.2:14059178-14059197 MS.gene023426:CDS 45.0%
CTTTCGCTGATGAAAGGTCA+AGG - chr4.2:14059337-14059356 None:intergenic 45.0%
GAACCATTGCTCACTCTACT+CGG + chr4.2:14059158-14059177 MS.gene023426:CDS 45.0%
TTTCCGAGTAGAGTGAGCAA+TGG - chr4.2:14059164-14059183 None:intergenic 45.0%
! TCTTGTTTGATGCTCCAGCT+TGG - chr4.2:14058963-14058982 None:intergenic 45.0%
! TGACTTGATTGGAGTGCTTC+AGG - chr4.2:14059730-14059749 None:intergenic 45.0%
!! ACAACCCGGCATTGATTTCT+CGG - chr4.2:14058986-14059005 None:intergenic 45.0%
!! CATCTGTTGCTTTCCATCTG+CGG - chr4.2:14060665-14060684 None:intergenic 45.0%
!! TCAGTTTTGTCTTCACGCTG+TGG + chr4.2:14059751-14059770 MS.gene023426:CDS 45.0%
ACCAGGTGTATCGAACAACC+CGG - chr4.2:14059000-14059019 None:intergenic 50.0%
AGCTTTACCTGCCACATTGC+TGG - chr4.2:14059442-14059461 None:intergenic 50.0%
AGTTACGGCTTGAACAGCAC+TGG - chr4.2:14061053-14061072 None:intergenic 50.0%
CAATATCTCCCTCTTCCCAG+TGG + chr4.2:14058877-14058896 MS.gene023426:CDS 50.0%
CCAGAGACAGAAGAAAGCTC+TGG - chr4.2:14059137-14059156 None:intergenic 50.0%
CCAGAGCTTTCTTCTGTCTC+TGG + chr4.2:14059134-14059153 MS.gene023426:CDS 50.0%
TAGAGTTGTGGGATGAGGAC+TGG + chr4.2:14060272-14060291 MS.gene023426:intron 50.0%
TGTTTGATGCTCCAGCTTGG+TGG - chr4.2:14058960-14058979 None:intergenic 50.0%
! GATTTTGCCAGCAATGTGGC+AGG + chr4.2:14059432-14059451 MS.gene023426:CDS 50.0%
!!! CGTCGATTTTGCCAGCAATG+TGG + chr4.2:14059428-14059447 MS.gene023426:CDS 50.0%
CAAGGCCACAACCTTCAACC+TGG - chr4.2:14059319-14059338 None:intergenic 55.0%
GGGTTGTTCGATACACCTGG+TGG + chr4.2:14058999-14059018 MS.gene023426:CDS 55.0%
!! ACGGCTTGAACAGCACTGGT+TGG - chr4.2:14061049-14061068 None:intergenic 55.0%
CAACCTTCAACCTGGCAGCG+CGG - chr4.2:14059311-14059330 None:intergenic 60.0%
CTTGCAATTTCCGCGCTGCC+AGG + chr4.2:14059298-14059317 MS.gene023426:CDS 60.0%
GCCGGGTTGTTCGATACACC+TGG + chr4.2:14058996-14059015 MS.gene023426:CDS 60.0%
TCCCAGTCCCACTGGGAAGA+GGG - chr4.2:14058888-14058907 None:intergenic 60.0%
TCCCTCTTCCCAGTGGGACT+GGG + chr4.2:14058884-14058903 MS.gene023426:CDS 60.0%
! ATTGGTGCTCCCAGTCCCAC+TGG - chr4.2:14058896-14058915 None:intergenic 60.0%
! CGCTGCCAGGTTGAAGGTTG+TGG + chr4.2:14059311-14059330 MS.gene023426:CDS 60.0%
! GCGGCCGTTCATGTTTTGCC+AGG - chr4.2:14060725-14060744 None:intergenic 60.0%
! TTGGTGCTCCCAGTCCCACT+GGG - chr4.2:14058895-14058914 None:intergenic 60.0%
! TTTCCGCGCTGCCAGGTTGA+AGG + chr4.2:14059305-14059324 MS.gene023426:CDS 60.0%
CTCCCAGTCCCACTGGGAAG+AGG - chr4.2:14058889-14058908 None:intergenic 65.0%
CTCCCTCTTCCCAGTGGGAC+TGG + chr4.2:14058883-14058902 MS.gene023426:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 14058864 14061105 14058864 ID=MS.gene023426
chr4.2 mRNA 14058864 14061105 14058864 ID=MS.gene023426.t1;Parent=MS.gene023426
chr4.2 exon 14058864 14059453 14058864 ID=MS.gene023426.t1.exon1;Parent=MS.gene023426.t1
chr4.2 CDS 14058864 14059453 14058864 ID=cds.MS.gene023426.t1;Parent=MS.gene023426.t1
chr4.2 exon 14059639 14059772 14059639 ID=MS.gene023426.t1.exon2;Parent=MS.gene023426.t1
chr4.2 CDS 14059639 14059772 14059639 ID=cds.MS.gene023426.t1;Parent=MS.gene023426.t1
chr4.2 exon 14060668 14060781 14060668 ID=MS.gene023426.t1.exon3;Parent=MS.gene023426.t1
chr4.2 CDS 14060668 14060781 14060668 ID=cds.MS.gene023426.t1;Parent=MS.gene023426.t1
chr4.2 exon 14060915 14061105 14060915 ID=MS.gene023426.t1.exon4;Parent=MS.gene023426.t1
chr4.2 CDS 14060915 14061105 14060915 ID=cds.MS.gene023426.t1;Parent=MS.gene023426.t1
Gene Sequence

>MS.gene023426

ATGGACTTGAATGCAATATCTCCCTCTTCCCAGTGGGACTGGGAGCACCAATCATTCTTCCACACAAAAGCAACTGAAAATCCAAAATTACAACCACCAAGCTGGAGCATCAAACAAGACCGAGAAATCAATGCCGGGTTGTTCGATACACCTGGTGGAAGTGATATTTTTGGCTCTGCATCAAGGAGTTCAAAATCAGCTTCAAATAGTTCATCGTCAAATAGGGATAATAGCAAAACATGTATTTTTGCTTGTGGAAATTCTCATACACCAGAGCTTTCTTCTGTCTCTGGTGAACCATTGCTCACTCTACTCGGAAAACGAGTGTACATTGAGGATGTATGTCCGAAAAGTAATTCCAAAAACCTATCTTTTTCAAGGGATCTTGCGTCATCTTTAAGTATTGGAAAGAAATGTAAGTTCAATAGTCAGAACTTGCAATTTCCGCGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTTTCATCAGCGAAAGATTATCATCGCAAACGAAGAGTTTGTGAAAGTCATTCCAAATCTCCTATGGTGGTTATAGATGGTATGGAACGTCGATTTTGCCAGCAATGTGGCAGGTAAAGCTTCTTAACAAATGTATGATTGTTTCAATGTAATTGACATAGGAAATAATTTTTTTTTTTTTTTTTGGTAGTGACGAAATGTTGTTAGCACATCATTATAAGCTAATATCACTACTCAGTCTGATTAAACTTGCTGTCTTTTTTGAATGGTGTTGAATTATTTGCTTCGAATGCTGAAGGTTCCACGATCTGTTTGAGTTCGATGAAAAGAAAAGAAGCTGCAGAGAACAACTTTCACGTCACAATGCAAGGCGACGTAAGCATCAGCCTGAAGCACTCCAATCAAGTCAATCAGTTTTGTCTTCACGCTGTGGTAATACTTATTTTTCAATAGTTTTGCAGTTTATCTCAGTTTCTGCTTGTTATCTATGTTTGGGTGTTAAAGCTGAAAAGATGAAATGTGGAAACACAAGACCATGTTATGCATACCTTAGTTGACAATAAACATTGCTGAATGAAAGATGTTTTAAAACTTGACATGCTTAACGTCACATTTCTTTGCTGTCCTGCTTATTTGCGTAAGAGTTTACCTTGCAAGTTACAATGGACATTAAATGTGATGTGACAGAACTTCTTAATTTGCTACAATTTCCTATCTTTTTAGTTCTGCTCATTTTTTCTTTAGTTTCATAGATCTTATTGGATTGTCAACTGTCATACGTTTCGATGGTAAAGAGGCTTAATCTTCTGTAACATGAATAAGTTAAGCATGTTCAAGAGTTCTAGCTGTAACAATTTTATAATAACCATGCAAAGTAACAGTCATGTTATTCTTGATAATTACTTATTGTCAGAAAGGATATTGCTATATTTAGAGTTGTGGGATGAGGACTGGATATAGTTAAAGGCAGATTTAAGAGCCTAAGTCTTTAGAGAATTAAGGTAGCGTACTCCTTATTAAGGCATATGATACAAATAATTATCATGATTGTTTGGACTTGAGTGTGATTATGACATGCCTAAGCTGAAGTCTTTACTAACTAGATTTGTATGAGTATGCCATTCTTTAAAACCTGATTTTGTAAAAAAAACAACTTTAAATTTTGCTGTTAGTTGAAACATAGACCAAAGAACATTCACTTTTAGTTTTTTATAGGTTTATTGTAGTTTTTTTATAGGTTTATTGTAGTTAATTGCAAGTCGTTTATTTCTCAATGATTCAAATTTTACTGCTCTCTTCTAACTTCTAATATATTTTGGTTCCGCAGATGGAAAGCAACAGATGAGTCCATTTGCTAATTCAGAGACTGCTACAAATTTAGCCTGGCAAAACATGAACGGCCGCAAGCTCTTCCAAACAAAAGACAACACTAACACACAAGGTACTGTCACTATGCTTTCTGATGATTCCGTTGTCCATTTTACATCCAAAGTTCTTGCAACCAAAAGTATCCAATTGAGGTTATTTCACGTTTATTGCCACATTTTTTGTGCTGATTTGTTATAACTTTGCAGGTGTAGAAGATTTCATTACCGTTTCTGATACAAATGATAAACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACTAATCCATGGGATTCATATGCGACTAAATCCATGTCTCTAGAACATTCTAATCGTCCAACCAGTGCTGTTCAAGCCGTAACTCATGCAATGAGTCAGCGCGTGCCTCTTGTTTAA
Protein sequence

>MS.gene023426.t1

MDLNAISPSSQWDWEHQSFFHTKATENPKLQPPSWSIKQDREINAGLFDTPGGSDIFGSASRSSKSASNSSSSNRDNSKTCIFACGNSHTPELSSVSGEPLLTLLGKRVYIEDVCPKSNSKNLSFSRDLASSLSIGKKCKFNSQNLQFPRCQVEGCGLDLSSAKDYHRKRRVCESHSKSPMVVIDGMERRFCQQCGRFHDLFEFDEKKRSCREQLSRHNARRRKHQPEALQSSQSVLSSRCDGKQQMSPFANSETATNLAWQNMNGRKLFQTKDNTNTQGVEDFITVSDTNDKQDFTCALSLLSTNPWDSYATKSMSLEHSNRPTSAVQAVTHAMSQRVPLV