Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023441.t1 | KEH20613.1 | 97.2 | 961 | 26 | 1 | 1 | 960 | 1 | 961 | 0.00E+00 | 1830.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023441.t1 | Q9FYG2 | 51.9 | 981 | 402 | 17 | 5 | 939 | 34 | 990 | 4.2e-250 | 865.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023441.t1 | A0A072TUT2 | 97.2 | 961 | 26 | 1 | 1 | 960 | 1 | 961 | 0.0e+00 | 1830.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene023441.t1 | TF | CAMTA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023441.t1 | MTR_8g080800 | 97.190 | 961 | 26 | 1 | 1 | 960 | 1 | 961 | 0.0 | 1946 |
MS.gene023441.t1 | MTR_3g085050 | 60.041 | 986 | 321 | 12 | 1 | 957 | 1 | 942 | 0.0 | 1097 |
MS.gene023441.t1 | MTR_3g085050 | 60.354 | 961 | 310 | 11 | 1 | 934 | 1 | 917 | 0.0 | 1082 |
MS.gene023441.t1 | MTR_2g008840 | 41.318 | 622 | 278 | 21 | 388 | 956 | 399 | 986 | 7.83e-133 | 425 |
MS.gene023441.t1 | MTR_2g008840 | 49.007 | 151 | 65 | 4 | 36 | 179 | 2 | 147 | 2.17e-35 | 146 |
MS.gene023441.t1 | MTR_2g008840 | 41.318 | 622 | 278 | 21 | 388 | 956 | 439 | 1026 | 3.28e-132 | 424 |
MS.gene023441.t1 | MTR_2g008840 | 49.180 | 183 | 81 | 4 | 4 | 179 | 10 | 187 | 4.10e-45 | 177 |
MS.gene023441.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 339 | 881 | 8.76e-128 | 409 |
MS.gene023441.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 339 | 881 | 1.23e-127 | 409 |
MS.gene023441.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 496 | 1038 | 1.83e-126 | 409 |
MS.gene023441.t1 | MTR_8g090205 | 45.918 | 196 | 87 | 4 | 6 | 188 | 8 | 197 | 3.28e-46 | 180 |
MS.gene023441.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 496 | 1038 | 2.17e-126 | 410 |
MS.gene023441.t1 | MTR_8g090205 | 45.918 | 196 | 87 | 4 | 6 | 188 | 8 | 197 | 3.78e-46 | 180 |
MS.gene023441.t1 | MTR_4g121840 | 33.299 | 970 | 521 | 29 | 6 | 935 | 24 | 907 | 2.18e-126 | 405 |
MS.gene023441.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 498 | 1040 | 2.27e-126 | 409 |
MS.gene023441.t1 | MTR_8g090205 | 46.392 | 194 | 85 | 4 | 8 | 188 | 12 | 199 | 1.18e-45 | 179 |
MS.gene023441.t1 | MTR_8g090205 | 41.889 | 561 | 280 | 12 | 394 | 926 | 498 | 1040 | 2.87e-126 | 409 |
MS.gene023441.t1 | MTR_8g090205 | 46.392 | 194 | 85 | 4 | 8 | 188 | 12 | 199 | 1.26e-45 | 179 |
MS.gene023441.t1 | MTR_4g094215 | 39.165 | 623 | 304 | 19 | 388 | 959 | 426 | 1024 | 3.24e-121 | 394 |
MS.gene023441.t1 | MTR_4g094215 | 50.641 | 156 | 70 | 1 | 8 | 156 | 14 | 169 | 1.44e-42 | 169 |
MS.gene023441.t1 | MTR_4g094215 | 39.228 | 622 | 304 | 19 | 388 | 959 | 426 | 1023 | 3.60e-121 | 394 |
MS.gene023441.t1 | MTR_4g094215 | 50.641 | 156 | 70 | 1 | 8 | 156 | 14 | 169 | 1.59e-42 | 169 |
MS.gene023441.t1 | MTR_4g121840 | 33.477 | 929 | 492 | 29 | 47 | 935 | 35 | 877 | 5.65e-116 | 377 |
MS.gene023441.t1 | MTR_8g090205 | 39.440 | 464 | 247 | 9 | 394 | 840 | 498 | 944 | 7.36e-92 | 313 |
MS.gene023441.t1 | MTR_8g090205 | 50.610 | 164 | 68 | 2 | 8 | 158 | 12 | 175 | 1.21e-45 | 178 |
MS.gene023441.t1 | MTR_2g008840 | 38.289 | 491 | 233 | 14 | 388 | 839 | 439 | 898 | 1.69e-91 | 311 |
MS.gene023441.t1 | MTR_2g008840 | 49.180 | 183 | 81 | 4 | 4 | 179 | 10 | 187 | 2.56e-45 | 177 |
MS.gene023441.t1 | MTR_2g034650 | 37.809 | 566 | 295 | 16 | 398 | 933 | 355 | 893 | 2.35e-87 | 300 |
MS.gene023441.t1 | MTR_2g034650 | 51.034 | 145 | 69 | 1 | 6 | 150 | 23 | 165 | 4.42e-40 | 160 |
MS.gene023441.t1 | MTR_4g094215 | 37.137 | 482 | 251 | 12 | 388 | 839 | 426 | 885 | 4.14e-86 | 296 |
MS.gene023441.t1 | MTR_4g094215 | 50.641 | 156 | 70 | 1 | 8 | 156 | 14 | 169 | 1.21e-42 | 169 |
MS.gene023441.t1 | MTR_8g090200 | 27.465 | 426 | 223 | 18 | 117 | 489 | 14 | 406 | 4.13e-20 | 94.4 |
MS.gene023441.t1 | MTR_4g123740 | 50.000 | 66 | 29 | 2 | 70 | 135 | 6 | 67 | 9.68e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023441.t1 | AT1G67310 | 52.434 | 986 | 393 | 21 | 3 | 939 | 32 | 990 | 0.0 | 902 |
MS.gene023441.t1 | AT5G09410 | 40.806 | 620 | 292 | 21 | 389 | 956 | 276 | 872 | 1.16e-124 | 400 |
MS.gene023441.t1 | AT5G09410 | 40.806 | 620 | 292 | 21 | 389 | 956 | 379 | 975 | 1.57e-123 | 400 |
MS.gene023441.t1 | AT5G09410 | 54.745 | 137 | 62 | 0 | 1 | 137 | 10 | 146 | 1.31e-45 | 178 |
MS.gene023441.t1 | AT5G09410 | 40.806 | 620 | 292 | 21 | 389 | 956 | 397 | 993 | 2.34e-123 | 400 |
MS.gene023441.t1 | AT5G09410 | 54.745 | 137 | 62 | 0 | 1 | 137 | 10 | 146 | 1.41e-45 | 178 |
MS.gene023441.t1 | AT5G09410 | 40.806 | 620 | 292 | 21 | 389 | 956 | 456 | 1052 | 2.22e-122 | 399 |
MS.gene023441.t1 | AT5G09410 | 44.910 | 167 | 62 | 1 | 1 | 137 | 69 | 235 | 1.40e-40 | 162 |
MS.gene023441.t1 | AT2G22300 | 41.593 | 565 | 261 | 13 | 392 | 926 | 396 | 921 | 1.81e-121 | 394 |
MS.gene023441.t1 | AT2G22300 | 38.919 | 185 | 106 | 3 | 53 | 235 | 1 | 180 | 4.76e-31 | 132 |
MS.gene023441.t1 | AT2G22300 | 41.593 | 565 | 261 | 13 | 392 | 926 | 454 | 979 | 9.35e-121 | 393 |
MS.gene023441.t1 | AT2G22300 | 40.343 | 233 | 132 | 3 | 5 | 235 | 11 | 238 | 4.75e-48 | 186 |
MS.gene023441.t1 | AT2G22300 | 41.593 | 565 | 261 | 13 | 392 | 926 | 454 | 979 | 9.35e-121 | 393 |
MS.gene023441.t1 | AT2G22300 | 40.343 | 233 | 132 | 3 | 5 | 235 | 11 | 238 | 4.75e-48 | 186 |
MS.gene023441.t1 | AT5G64220 | 39.864 | 587 | 290 | 16 | 389 | 934 | 446 | 1010 | 1.10e-120 | 394 |
MS.gene023441.t1 | AT5G64220 | 49.711 | 173 | 74 | 1 | 8 | 180 | 14 | 173 | 5.02e-48 | 186 |
MS.gene023441.t1 | AT5G64220 | 39.864 | 587 | 290 | 16 | 389 | 934 | 446 | 1010 | 1.10e-120 | 394 |
MS.gene023441.t1 | AT5G64220 | 49.711 | 173 | 74 | 1 | 8 | 180 | 14 | 173 | 5.02e-48 | 186 |
MS.gene023441.t1 | AT3G16940 | 31.295 | 687 | 400 | 22 | 291 | 935 | 155 | 811 | 3.49e-79 | 275 |
MS.gene023441.t1 | AT3G16940 | 48.993 | 149 | 75 | 1 | 12 | 160 | 1 | 148 | 8.17e-38 | 153 |
MS.gene023441.t1 | AT3G16940 | 31.295 | 687 | 400 | 22 | 291 | 935 | 182 | 838 | 4.64e-79 | 275 |
MS.gene023441.t1 | AT3G16940 | 47.742 | 155 | 80 | 1 | 6 | 160 | 22 | 175 | 7.88e-39 | 156 |
MS.gene023441.t1 | AT3G16940 | 29.915 | 585 | 346 | 18 | 291 | 838 | 182 | 739 | 1.96e-56 | 209 |
MS.gene023441.t1 | AT3G16940 | 53.030 | 132 | 62 | 0 | 6 | 137 | 22 | 153 | 3.55e-39 | 157 |
Find 224 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGTGCATAGTAACAATTTA+TGG | 0.140587 | 4.3:-16135044 | None:intergenic |
TTCACCATCTTCTTCATTAA+TGG | 0.149051 | 4.3:+16137874 | MS.gene023441:CDS |
AGAAACCTCAGCTGACTTTA+AGG | 0.172864 | 4.3:+16136027 | MS.gene023441:CDS |
ATTATAGAGGCTCTACTATT+TGG | 0.207358 | 4.3:+16139236 | MS.gene023441:CDS |
GGAAGCATTACAAAGTATTA+TGG | 0.222235 | 4.3:+16140775 | MS.gene023441:CDS |
AATAATCCCCTGCTCTTTCT+TGG | 0.231755 | 4.3:-16139378 | None:intergenic |
AAAACAGAAATTTACTATTA+AGG | 0.252298 | 4.3:+16138211 | MS.gene023441:CDS |
CTTCATTGGGCTGCACGTTT+TGG | 0.253483 | 4.3:+16139497 | MS.gene023441:CDS |
GGGATTATTCACATGGTTGC+TGG | 0.262638 | 4.3:+16139392 | MS.gene023441:CDS |
GCCAGGCATGACCATCTTTC+CGG | 0.272852 | 4.3:-16134399 | None:intergenic |
CTGTTATTACTTGTTAGATT+TGG | 0.278401 | 4.3:+16139119 | MS.gene023441:CDS |
CTTTGTAATGCTTCCTAACT+TGG | 0.282011 | 4.3:-16140767 | None:intergenic |
CCCTTGATGATTCTGTGGTT+TGG | 0.285385 | 4.3:-16136152 | None:intergenic |
ACTTCCTCCATATTCTTCTA+TGG | 0.286754 | 4.3:+16138088 | MS.gene023441:CDS |
GTTACTCTGTGCATTACTTC+TGG | 0.291948 | 4.3:+16138987 | MS.gene023441:CDS |
GGAGAAAAGGAGTCGGTTTA+CGG | 0.298490 | 4.3:+16140835 | MS.gene023441:CDS |
ATGGGTGGACTGCCCTTCAT+TGG | 0.305451 | 4.3:+16139483 | MS.gene023441:CDS |
TCAGAGGAATAACCCCATTC+TGG | 0.307135 | 4.3:-16138242 | None:intergenic |
CATCATGAGATGCTCCAATT+TGG | 0.318825 | 4.3:-16138163 | None:intergenic |
TTGTTTGACCAAAGCCAAAT+TGG | 0.322075 | 4.3:+16138149 | MS.gene023441:CDS |
CTTTCCAGAGGCGGAGCTAT+TGG | 0.324977 | 4.3:+16135083 | MS.gene023441:CDS |
AGTTCCTGTTGAGCTAATTC+AGG | 0.325656 | 4.3:+16138920 | MS.gene023441:CDS |
TTTGGCAGTGAAAATTCTTC+TGG | 0.330125 | 4.3:+16139254 | MS.gene023441:CDS |
GTCATCCCTCTGATTCTGCC+TGG | 0.330295 | 4.3:+16138874 | MS.gene023441:CDS |
ATTCACATGGTTGCTGGGTT+GGG | 0.335295 | 4.3:+16139398 | MS.gene023441:CDS |
TTCACTTGTTTGTGCAAGTT+CGG | 0.338414 | 4.3:-16141306 | None:intergenic |
TGTTACTTGTTGGCTGTTGC+GGG | 0.338603 | 4.3:-16133791 | None:intergenic |
ATTATGGGCAGTTGGAATCT+TGG | 0.340243 | 4.3:+16140791 | MS.gene023441:CDS |
TGTTATTACTTGTTAGATTT+GGG | 0.340702 | 4.3:+16139120 | MS.gene023441:CDS |
GTTTCATCCATAGAAGAATA+TGG | 0.341126 | 4.3:-16138095 | None:intergenic |
TAAAATAGCCCCTGGTTATC+TGG | 0.347146 | 4.3:-16136214 | None:intergenic |
AGCTTCATGCTCGTTGTAGA+AGG | 0.349283 | 4.3:-16136119 | None:intergenic |
ATAGTAGAGCCTCTATAATA+TGG | 0.356170 | 4.3:-16139232 | None:intergenic |
GAAGAGTATTACGTTTCTTC+CGG | 0.359417 | 4.3:+16134380 | MS.gene023441:CDS |
GAAGTTCCATCTCACATTCC+TGG | 0.365550 | 4.3:+16138960 | MS.gene023441:CDS |
TTCATCTACTTCCCGAGATC+TGG | 0.365870 | 4.3:-16139336 | None:intergenic |
ATTCTTCTGGTACTATCAAT+TGG | 0.373127 | 4.3:+16139267 | MS.gene023441:CDS |
TGCAGCTAGCAGCGGGCATA+AGG | 0.374436 | 4.3:+16139889 | MS.gene023441:CDS |
TAACAGCTCATCTGGAGTTC+TGG | 0.376239 | 4.3:-16139102 | None:intergenic |
TATTCACATGGTTGCTGGGT+TGG | 0.377002 | 4.3:+16139397 | MS.gene023441:CDS |
CCAATTGGATCTTGTGCACT+TGG | 0.378723 | 4.3:-16139848 | None:intergenic |
ATGTGAGAGGTTACCAAGTT+AGG | 0.379390 | 4.3:+16140754 | MS.gene023441:CDS |
GAGAAAAGGAGTCGGTTTAC+GGG | 0.381739 | 4.3:+16140836 | MS.gene023441:CDS |
GTTGCATCACTTATAGCTTC+TGG | 0.385172 | 4.3:+16139800 | MS.gene023441:CDS |
AGTCATTCCATTGTTATAAG+AGG | 0.386448 | 4.3:-16135978 | None:intergenic |
CCATCCTGAATTAGCTCAAC+AGG | 0.389513 | 4.3:-16138924 | None:intergenic |
GCTTCTCTTTCCAATGGAGC+AGG | 0.391039 | 4.3:-16139077 | None:intergenic |
CATTTCCATCAGGGAAATCA+TGG | 0.392414 | 4.3:-16137680 | None:intergenic |
GAAGCATTACAAAGTATTAT+GGG | 0.396758 | 4.3:+16140776 | MS.gene023441:CDS |
ATAGCTTCTGGTGCATCTGC+TGG | 0.404064 | 4.3:+16139812 | MS.gene023441:CDS |
ATGCACAGAGTAACCTTTCC+AGG | 0.407884 | 4.3:-16138978 | None:intergenic |
CATCCATTGCAGCTAGCAGC+GGG | 0.408752 | 4.3:+16139882 | MS.gene023441:CDS |
ACAAGTAATAACAGCTCATC+TGG | 0.410138 | 4.3:-16139110 | None:intergenic |
TTGTAGGGAAGGCTCAGTTC+TGG | 0.411053 | 4.3:+16135809 | MS.gene023441:intron |
GAGATGCTCCAATTTGGCTT+TGG | 0.415155 | 4.3:-16138157 | None:intergenic |
TGTGCATTACTTCTGGAAAC+CGG | 0.420398 | 4.3:+16138994 | MS.gene023441:CDS |
TCAAGCTTTGCGCCGATTGG+AGG | 0.420689 | 4.3:+16136054 | MS.gene023441:CDS |
CTGGTGGCTTCTCTTTCCAA+TGG | 0.422838 | 4.3:-16139083 | None:intergenic |
TCACACCGCAACTGAGAATA+GGG | 0.423019 | 4.3:-16139439 | None:intergenic |
AGCAGGGTCGGTGAAATTCT+TGG | 0.425679 | 4.3:-16139060 | None:intergenic |
TACTCAAGCTTTGCGCCGAT+TGG | 0.428909 | 4.3:+16136051 | MS.gene023441:CDS |
GAGGAATCCACAGCTCTCTC+TGG | 0.431726 | 4.3:+16136190 | MS.gene023441:CDS |
TCTGCCTGGGCCTGTATGCT+TGG | 0.432274 | 4.3:+16138888 | MS.gene023441:CDS |
TCATATAGTACTCAGAATCC+AGG | 0.436097 | 4.3:+16135884 | MS.gene023441:CDS |
TGGGTGGACTGCCCTTCATT+GGG | 0.436536 | 4.3:+16139484 | MS.gene023441:CDS |
GGATTATTCACATGGTTGCT+GGG | 0.437285 | 4.3:+16139393 | MS.gene023441:CDS |
TTTCACCGACCCTGCTCCAT+TGG | 0.437455 | 4.3:+16139067 | MS.gene023441:CDS |
TAAGGCAGTCTCCCCAGAAT+GGG | 0.443176 | 4.3:+16138229 | MS.gene023441:CDS |
GAAGCTCTGATTAGGTTCAT+AGG | 0.447215 | 4.3:-16135930 | None:intergenic |
AGCGGGCATAAGGGACTGGC+AGG | 0.447828 | 4.3:+16139899 | MS.gene023441:CDS |
TGATATTGCTCACGAGCATC+AGG | 0.448217 | 4.3:-16140984 | None:intergenic |
CCATCTGTCATCTCTTACAC+TGG | 0.451970 | 4.3:+16139949 | MS.gene023441:CDS |
CAGAGGAATAACCCCATTCT+GGG | 0.453671 | 4.3:-16138241 | None:intergenic |
CAAAACGTGCAGCCCAATGA+AGG | 0.453699 | 4.3:-16139496 | None:intergenic |
ATGTTACTTGTTGGCTGTTG+CGG | 0.454201 | 4.3:-16133792 | None:intergenic |
CCCGGTGACAATTGTGTGCC+AGG | 0.454642 | 4.3:-16135833 | None:intergenic |
AAGTAATGATAACAACGAAT+CGG | 0.457105 | 4.3:+16139169 | MS.gene023441:CDS |
GATCACATTCATTTAGAAAA+CGG | 0.457488 | 4.3:+16140140 | MS.gene023441:CDS |
ATAAATTTCCGTGATGTCAA+TGG | 0.460639 | 4.3:+16139464 | MS.gene023441:CDS |
AGAAGGCTGATGATGATTCA+TGG | 0.462726 | 4.3:+16139207 | MS.gene023441:CDS |
AAAAGAGATGGAAGAGCTGT+AGG | 0.467414 | 4.3:+16134427 | MS.gene023441:CDS |
AGTAGATGTGGAAATTGAAA+AGG | 0.467562 | 4.3:+16140929 | MS.gene023441:CDS |
GGACTGGAGAAGCTCTGATT+AGG | 0.467985 | 4.3:-16135938 | None:intergenic |
TCATCCCTCTGATTCTGCCT+GGG | 0.473426 | 4.3:+16138875 | MS.gene023441:CDS |
TTACGTTTCTTCCGGAAAGA+TGG | 0.474223 | 4.3:+16134388 | MS.gene023441:CDS |
TAGCTCCGCCTCTGGAAAGT+AGG | 0.474330 | 4.3:-16135079 | None:intergenic |
GTGCTAAGATGGCGGAGAAA+AGG | 0.474475 | 4.3:+16140822 | MS.gene023441:CDS |
TTCACACCGCAACTGAGAAT+AGG | 0.474658 | 4.3:-16139440 | None:intergenic |
TATATTCTTGTAGGTGATAG+TGG | 0.478429 | 4.3:+16137633 | MS.gene023441:intron |
CGTGGCTTACTTCCAGATCT+CGG | 0.478848 | 4.3:+16139324 | MS.gene023441:CDS |
TTCTTTGTCCAAGAAAGAGC+AGG | 0.480183 | 4.3:+16139370 | MS.gene023441:CDS |
TAAACAACGGACGTTGACCC+TGG | 0.483608 | 4.3:-16135902 | None:intergenic |
TCTTCTTCTACCATGACATC+TGG | 0.484799 | 4.3:+16133207 | None:intergenic |
AATCAGAGCTTCTCCAGTCC+TGG | 0.487676 | 4.3:+16135941 | MS.gene023441:CDS |
GCTTCTTGAAGAGCTACTAA+AGG | 0.488943 | 4.3:+16139289 | MS.gene023441:CDS |
TTCAGAAGAAATATCGAGGT+TGG | 0.489389 | 4.3:+16140299 | MS.gene023441:CDS |
AATGCACCTTCAGCCGTTCG+TGG | 0.490374 | 4.3:-16134456 | None:intergenic |
AGTAATGATAACAACGAATC+GGG | 0.494514 | 4.3:+16139170 | MS.gene023441:CDS |
GAAATGAAAAGGCTCTATCA+TGG | 0.494556 | 4.3:+16137697 | MS.gene023441:CDS |
TGACTTCACTGCATGACTCC+CGG | 0.494680 | 4.3:-16139013 | None:intergenic |
GCAACTGAGAATAGGGTTCA+AGG | 0.496854 | 4.3:-16139432 | None:intergenic |
ACATCCAATAGCTCCGCCTC+TGG | 0.497187 | 4.3:-16135087 | None:intergenic |
GAGGTAACTTCTGCAGATCC+AGG | 0.497445 | 4.3:-16135959 | None:intergenic |
TGGACAAGGTTGTGCTAAGA+TGG | 0.498360 | 4.3:+16140811 | MS.gene023441:CDS |
GCATCCATTGCAGCTAGCAG+CGG | 0.501501 | 4.3:+16139881 | MS.gene023441:CDS |
TAAATTTCCGTGATGTCAAT+GGG | 0.503471 | 4.3:+16139465 | MS.gene023441:CDS |
CTAGACCATGATTTCCCTGA+TGG | 0.505531 | 4.3:+16137675 | MS.gene023441:CDS |
TAGCAGCGGGCATAAGGGAC+TGG | 0.507308 | 4.3:+16139895 | MS.gene023441:CDS |
TTTCCCTGATGGAAATGAAA+AGG | 0.507835 | 4.3:+16137686 | MS.gene023441:CDS |
AATTTCAACACTGATAATGC+TGG | 0.508070 | 4.3:+16137932 | MS.gene023441:CDS |
ATCATCCCTTGATGATTCTG+TGG | 0.509626 | 4.3:-16136157 | None:intergenic |
AACTTAACTGCACCTCCAAT+CGG | 0.509739 | 4.3:-16136066 | None:intergenic |
TACAAAGTATTATGGGCAGT+TGG | 0.512430 | 4.3:+16140783 | MS.gene023441:CDS |
TGTATTTCTGACAGCAGCTA+AGG | 0.517159 | 4.3:-16140083 | None:intergenic |
GTGGCTTACTTCCAGATCTC+GGG | 0.517721 | 4.3:+16139325 | MS.gene023441:CDS |
ATGCCCGCTGCTAGCTGCAA+TGG | 0.519565 | 4.3:-16139885 | None:intergenic |
CGAACCCGGAAAACTATAGC+TGG | 0.519978 | 4.3:+16137906 | MS.gene023441:CDS |
ACCTGGCACACAATTGTCAC+CGG | 0.520234 | 4.3:+16135832 | MS.gene023441:CDS |
CCAAGTGCACAAGATCCAAT+TGG | 0.522680 | 4.3:+16139848 | MS.gene023441:CDS |
TCCAAACCACAGAATCATCA+AGG | 0.522957 | 4.3:+16136151 | MS.gene023441:CDS |
AAAATGTACATCACTTCTGC+AGG | 0.523652 | 4.3:-16133732 | None:intergenic |
TTCAACATCACCAAGCATAC+AGG | 0.525286 | 4.3:-16138898 | None:intergenic |
TCCGGAAAGATGGTCATGCC+TGG | 0.525525 | 4.3:+16134398 | MS.gene023441:CDS |
GGGTTTCAAACCAGAGATGC+AGG | 0.526149 | 4.3:+16140857 | MS.gene023441:CDS |
AAGAAATATCGAGGTTGGAA+AGG | 0.529924 | 4.3:+16140304 | MS.gene023441:CDS |
GCAGCTAGCAGCGGGCATAA+GGG | 0.531238 | 4.3:+16139890 | MS.gene023441:CDS |
ATCACCAAGCATACAGGCCC+AGG | 0.535400 | 4.3:-16138892 | None:intergenic |
CTTGACATAGCATAAAGCTC+TGG | 0.536851 | 4.3:-16140229 | None:intergenic |
AGCTCCGCCTCTGGAAAGTA+GGG | 0.537194 | 4.3:-16135078 | None:intergenic |
TTAAGGCAGTCTCCCCAGAA+TGG | 0.537679 | 4.3:+16138228 | MS.gene023441:CDS |
GCTACTAAAGGATAAGCTAC+AGG | 0.543205 | 4.3:+16139301 | MS.gene023441:CDS |
TCCATCTCACATTCCTGGAA+AGG | 0.544442 | 4.3:+16138965 | MS.gene023441:CDS |
ATTGGAGCATCTCATGATGC+TGG | 0.547038 | 4.3:+16138167 | MS.gene023441:CDS |
TCTCTCTGGACCAGATAACC+AGG | 0.547626 | 4.3:+16136204 | MS.gene023441:CDS |
TTCATGGAGCCATATTATAG+AGG | 0.548594 | 4.3:+16139223 | MS.gene023441:CDS |
GCAATACTTACATTTCCTGC+TGG | 0.549061 | 4.3:-16137735 | None:intergenic |
AACTGTTAGTAATGTCTCCA+AGG | 0.549109 | 4.3:+16140018 | MS.gene023441:CDS |
ATGCACCTTCAGCCGTTCGT+GGG | 0.549348 | 4.3:-16134455 | None:intergenic |
AACTTCTGCAGATCCAGGAC+TGG | 0.551466 | 4.3:-16135954 | None:intergenic |
GTGCATTACTTCTGGAAACC+GGG | 0.556150 | 4.3:+16138995 | MS.gene023441:CDS |
ATCAAGAAGCTCAAAGGAGA+TGG | 0.558476 | 4.3:+16133703 | MS.gene023441:CDS |
GATGGATATAATGGAAGGCA+AGG | 0.559300 | 4.3:+16136238 | MS.gene023441:CDS |
TCTTTCCAATGGAGCAGGGT+CGG | 0.560531 | 4.3:-16139072 | None:intergenic |
GGTGCAGTTAAGTTTGAATG+AGG | 0.561643 | 4.3:+16136075 | MS.gene023441:CDS |
AGAAGCCCACGAACGGCTGA+AGG | 0.562890 | 4.3:+16134450 | MS.gene023441:CDS |
ATCTGTATCAAGAAGCTCAA+AGG | 0.564701 | 4.3:+16133697 | MS.gene023441:CDS |
ACCTTTCCAGGAATGTGAGA+TGG | 0.568391 | 4.3:-16138966 | None:intergenic |
GTTACTTGTTGGCTGTTGCG+GGG | 0.569067 | 4.3:-16133790 | None:intergenic |
TTACTTGTTGGCTGTTGCGG+GGG | 0.569205 | 4.3:-16133789 | None:intergenic |
TACAACGAGCATGAAGCTAC+CGG | 0.569270 | 4.3:+16136124 | MS.gene023441:CDS |
GGTTCCATTAATGAAGAAGA+TGG | 0.570466 | 4.3:-16137878 | None:intergenic |
TTTATGATGGATATAATGGA+AGG | 0.570899 | 4.3:+16136233 | MS.gene023441:CDS |
GATATAAGTGCAAGTAGTGT+TGG | 0.571594 | 4.3:+16140199 | MS.gene023441:CDS |
TCGGGAAGTAGATGAAGAGA+CGG | 0.571607 | 4.3:+16139343 | MS.gene023441:CDS |
GGAAGGCTCAGTTCTGGACC+TGG | 0.571723 | 4.3:+16135815 | MS.gene023441:CDS |
ATTCTGTGGTTTGGAATCAC+CGG | 0.571949 | 4.3:-16136143 | None:intergenic |
GGACTATACGCAGAAGAACC+CGG | 0.572116 | 4.3:-16135851 | None:intergenic |
AGAAAAGGAGTCGGTTTACG+GGG | 0.574601 | 4.3:+16140837 | MS.gene023441:CDS |
CTTCTCTTTCCAATGGAGCA+GGG | 0.575366 | 4.3:-16139076 | None:intergenic |
GAAACAAATGCTGTTATGAG+TGG | 0.575428 | 4.3:+16140172 | MS.gene023441:CDS |
ATCCATCATAAAATAGCCCC+TGG | 0.576549 | 4.3:-16136222 | None:intergenic |
GAAGTTACCTCTTATAACAA+TGG | 0.577185 | 4.3:+16135971 | MS.gene023441:CDS |
ACATGTGTTACCAGATGTCA+TGG | 0.577892 | 4.3:-16133217 | None:intergenic |
ATGTTCACGTGAGTTTCGAA+AGG | 0.582903 | 4.3:-16140257 | None:intergenic |
GCCTGGCGGAAGAAAAGAGA+TGG | 0.583866 | 4.3:+16134415 | MS.gene023441:CDS |
TGCTGTCAGAAATACAACTC+AGG | 0.587231 | 4.3:+16140090 | MS.gene023441:CDS |
TGTCTCAAGAGTGCTGTCCA+TGG | 0.588545 | 4.3:+16140953 | MS.gene023441:CDS |
CAGCTCATCTGGAGTTCTGG+TGG | 0.594570 | 4.3:-16139099 | None:intergenic |
ACAGGCCCAGGCAGAATCAG+AGG | 0.594590 | 4.3:-16138880 | None:intergenic |
ATATTGCTTTCAGTGAGGAT+CGG | 0.596772 | 4.3:+16140044 | MS.gene023441:CDS |
TTTGTGTAGGCTCATGTGAG+AGG | 0.599137 | 4.3:+16140741 | MS.gene023441:intron |
AAAACGTGCAGCCCAATGAA+GGG | 0.600218 | 4.3:-16139495 | None:intergenic |
TTCTGAGTACTATATGAGCT+AGG | 0.601385 | 4.3:-16135878 | None:intergenic |
TTGAACCCTATTCTCAGTTG+CGG | 0.604424 | 4.3:+16139434 | MS.gene023441:CDS |
GCTTCATGCTCGTTGTAGAA+GGG | 0.605012 | 4.3:-16136118 | None:intergenic |
TCTTTGTCCAAGAAAGAGCA+GGG | 0.605633 | 4.3:+16139371 | MS.gene023441:CDS |
CCTGGCACACAATTGTCACC+GGG | 0.606469 | 4.3:+16135833 | MS.gene023441:CDS |
AATGGAACCAGTTACGAACC+CGG | 0.608529 | 4.3:+16137892 | MS.gene023441:CDS |
CCAGTGTAAGAGATGACAGA+TGG | 0.610309 | 4.3:-16139949 | None:intergenic |
TTATTCCTCTGAGACTACAA+AGG | 0.612910 | 4.3:+16138253 | MS.gene023441:CDS |
AGGGATGATGTGCAAGCAAG+AGG | 0.613198 | 4.3:+16136171 | MS.gene023441:CDS |
CAGTCCACCCATTGACATCA+CGG | 0.613503 | 4.3:-16139472 | None:intergenic |
CGGGAAGTAGATGAAGAGAC+GGG | 0.614610 | 4.3:+16139344 | MS.gene023441:CDS |
CATATAGTACTCAGAATCCA+GGG | 0.621356 | 4.3:+16135885 | MS.gene023441:CDS |
AGTAACCTTAAAGTCAGCTG+AGG | 0.622511 | 4.3:-16136032 | None:intergenic |
CCTGTTGAGCTAATTCAGGA+TGG | 0.622578 | 4.3:+16138924 | MS.gene023441:CDS |
CCGAAAACAGAAAGTAGATG+TGG | 0.623324 | 4.3:+16140917 | MS.gene023441:CDS |
CTGTAGGAGAAGCCCACGAA+CGG | 0.626185 | 4.3:+16134443 | MS.gene023441:CDS |
GCGGGCATAAGGGACTGGCA+GGG | 0.631483 | 4.3:+16139900 | MS.gene023441:CDS |
GGCAGTTGGAATCTTGGACA+AGG | 0.634216 | 4.3:+16140797 | MS.gene023441:CDS |
ACTGGCAGGGTATCTTTCTG+AGG | 0.634962 | 4.3:+16139913 | MS.gene023441:CDS |
AATGGAATGACTTACTCAGA+AGG | 0.637909 | 4.3:+16135989 | MS.gene023441:CDS |
CAGGCCCAGGCAGAATCAGA+GGG | 0.639349 | 4.3:-16138879 | None:intergenic |
ATACAACTCAGGCAGCTGCA+CGG | 0.642481 | 4.3:+16140101 | MS.gene023441:CDS |
GTACTATATGAGCTAGGACT+CGG | 0.643924 | 4.3:-16135872 | None:intergenic |
CTCTCTGGACCAGATAACCA+GGG | 0.644821 | 4.3:+16136205 | MS.gene023441:CDS |
AGAGCAGGGGATTATTCACA+TGG | 0.645001 | 4.3:+16139385 | MS.gene023441:CDS |
CCAAACCACAGAATCATCAA+GGG | 0.649452 | 4.3:+16136152 | MS.gene023441:CDS |
AGCTAAGGTATCTTTGAGTG+AGG | 0.652018 | 4.3:-16140068 | None:intergenic |
TCAATTCAGAAGAAATATCG+AGG | 0.658574 | 4.3:+16140295 | MS.gene023441:CDS |
TGAGAAGTATCGTCAAGCCA+AGG | 0.663944 | 4.3:+16141016 | MS.gene023441:CDS |
ATAAATTGTTACTATGCACA+TGG | 0.664247 | 4.3:+16135046 | MS.gene023441:CDS |
ACAAACCTTTGTAGTCTCAG+AGG | 0.664931 | 4.3:-16138258 | None:intergenic |
CTTTGTCCAAGAAAGAGCAG+GGG | 0.667079 | 4.3:+16139372 | MS.gene023441:CDS |
GGAAAATATTGCTTTCAGTG+AGG | 0.667748 | 4.3:+16140039 | MS.gene023441:CDS |
AGAACCCTACTTTCCAGAGG+CGG | 0.671098 | 4.3:+16135074 | MS.gene023441:CDS |
ATTTCCGTGATGTCAATGGG+TGG | 0.671605 | 4.3:+16139468 | MS.gene023441:CDS |
GTGACTTCATCAACACCTTG+AGG | 0.672304 | 4.3:-16138065 | None:intergenic |
TGAGCTATCTAAAAGTTCTG+CGG | 0.677458 | 4.3:+16139979 | MS.gene023441:CDS |
AAGGCAGTCTCCCCAGAATG+GGG | 0.679096 | 4.3:+16138230 | MS.gene023441:CDS |
AGCAGAACCCTACTTTCCAG+AGG | 0.679127 | 4.3:+16135071 | MS.gene023441:CDS |
ATCTGGTCCAGAGAGAGCTG+TGG | 0.680189 | 4.3:-16136197 | None:intergenic |
GGAAAGATGGTCATGCCTGG+CGG | 0.682808 | 4.3:+16134401 | MS.gene023441:CDS |
AGATGGCGGAGAAAAGGAGT+CGG | 0.685188 | 4.3:+16140828 | MS.gene023441:CDS |
TTCATAGGCGTCATAAACAA+CGG | 0.687883 | 4.3:-16135915 | None:intergenic |
AGAGGAATAACCCCATTCTG+GGG | 0.688939 | 4.3:-16138240 | None:intergenic |
ACAAGGTTGTGCTAAGATGG+CGG | 0.689666 | 4.3:+16140814 | MS.gene023441:CDS |
AGCATCAGGAGATTTGACCA+TGG | 0.713604 | 4.3:-16140970 | None:intergenic |
TCATCCATAGAAGAATATGG+AGG | 0.715779 | 4.3:-16138092 | None:intergenic |
TCTCTGGACCAGATAACCAG+GGG | 0.716297 | 4.3:+16136206 | MS.gene023441:CDS |
TAAAGGATAAGCTACAGGCG+TGG | 0.717250 | 4.3:+16139306 | MS.gene023441:CDS |
AGATCCAATTGGTAAAACTG+CGG | 0.717630 | 4.3:+16139859 | MS.gene023441:CDS |
TGTAATGAACGAGAACAATG+TGG | 0.718490 | 4.3:-16135381 | None:intergenic |
TCATTACAGAGACACAAGTG+AGG | 0.732114 | 4.3:+16135396 | MS.gene023441:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 16133219 | 16141388 | 16133219 | ID=MS.gene023441 |
chr4.3 | mRNA | 16133219 | 16141388 | 16133219 | ID=MS.gene023441.t1;Parent=MS.gene023441 |
chr4.3 | exon | 16133219 | 16133228 | 16133219 | ID=MS.gene023441.t1.exon1;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16133219 | 16133228 | 16133219 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
chr4.3 | exon | 16133676 | 16133807 | 16133676 | ID=MS.gene023441.t1.exon2;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16133676 | 16133807 | 16133676 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
chr4.3 | exon | 16134356 | 16134471 | 16134356 | ID=MS.gene023441.t1.exon3;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16134356 | 16134471 | 16134356 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
chr4.3 | exon | 16135028 | 16135116 | 16135028 | ID=MS.gene023441.t1.exon4;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16135028 | 16135116 | 16135028 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
chr4.3 | exon | 16135372 | 16135417 | 16135372 | ID=MS.gene023441.t1.exon5;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16135372 | 16135417 | 16135372 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
chr4.3 | exon | 16135815 | 16136259 | 16135815 | ID=MS.gene023441.t1.exon6;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16135815 | 16136259 | 16135815 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
chr4.3 | exon | 16137646 | 16137746 | 16137646 | ID=MS.gene023441.t1.exon7;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16137646 | 16137746 | 16137646 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
chr4.3 | exon | 16137869 | 16137959 | 16137869 | ID=MS.gene023441.t1.exon8;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16137869 | 16137959 | 16137869 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
chr4.3 | exon | 16138051 | 16138274 | 16138051 | ID=MS.gene023441.t1.exon9;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16138051 | 16138274 | 16138051 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
chr4.3 | exon | 16138849 | 16139522 | 16138849 | ID=MS.gene023441.t1.exon10;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16138849 | 16139522 | 16138849 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
chr4.3 | exon | 16139790 | 16140372 | 16139790 | ID=MS.gene023441.t1.exon11;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16139790 | 16140372 | 16139790 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
chr4.3 | exon | 16140750 | 16141037 | 16140750 | ID=MS.gene023441.t1.exon12;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16140750 | 16141037 | 16140750 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
chr4.3 | exon | 16141305 | 16141388 | 16141305 | ID=MS.gene023441.t1.exon13;Parent=MS.gene023441.t1 |
chr4.3 | CDS | 16141305 | 16141388 | 16141305 | ID=cds.MS.gene023441.t1;Parent=MS.gene023441.t1 |
Gene Sequence |
Protein sequence |