AlfalfaGEDB | MS.gene023474

M. sativa cultivar XinJiangDaYe / MS.gene023474

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023474.t1	XP_003629623.1	91.7	919	72	3	1	918	1	916	0.00E+00	1172.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023474.t1	Q9LK43	58.8	916	346	11	22	918	25	928	3.7e-187	656.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023474.t1	G7LH40	91.7	919	72	3	1	918	1	916	0.0e+00	1172.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene023474.t1	MTR_8g083240	92.927	919	61	3	1	918	1	916	1634
MS.gene023474.t1	MTR_3g084510	64.833	927	300	10	4	918	21	933	1132
MS.gene023474.t1	MTR_5g077430	49.895	950	431	14	1	918	9	945	840
MS.gene023474.t1	MTR_1g033000	47.761	938	447	18	9	918	11	933	811
MS.gene023474.t1	MTR_8g106100	46.246	919	450	13	4	901	12	907	757
MS.gene023474.t1	MTR_1g033010	45.912	954	447	18	4	918	5	928	752
MS.gene023474.t1	MTR_1g033040	46.267	951	458	20	3	918	4	936	746
MS.gene023474.t1	MTR_7g106210	45.289	934	458	19	22	918	25	942	725
MS.gene023474.t1	MTR_2g087230	43.051	957	497	20	1	918	6	953	666
MS.gene023474.t1	MTR_7g082110	42.652	837	415	16	22	847	26	808	618

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023474.t1	AT3G23750	56.786	921	357	15	22	918	25	928	0.0	992
MS.gene023474.t1	AT2G01820	49.583	960	420	17	2	918	5	943	0.0	848
MS.gene023474.t1	AT1G66150	50.267	937	409	16	20	918	25	942	0.0	835
MS.gene023474.t1	AT1G24650	47.871	869	407	11	6	863	6	839	0.0	733
MS.gene023474.t1	AT5G07280	31.159	828	474	27	61	853	426	1192	2.57e-91	315
MS.gene023474.t1	AT5G07280	28.141	398	243	11	61	426	284	670	1.44e-25	114
MS.gene023474.t1	AT5G07280	26.952	397	263	11	48	426	55	442	3.98e-25	113
MS.gene023474.t1	AT5G07280	25.513	439	250	11	61	426	164	598	1.01e-20	99.0
MS.gene023474.t1	AT3G13380	30.679	854	500	23	64	862	331	1147	8.43e-88	304
MS.gene023474.t1	AT3G13380	27.679	560	259	23	18	451	26	565	9.45e-29	125

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Find 275 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACTGGAGGTTTAGATG+TGG	0.716217	4.3:+15692272	None:intergenic
AAACCATCAAATATACTATT+AGG	0.301967	4.3:-15693672	MS.gene023474:CDS
AAAGGTTTATGCCGGTGACG+CGG	0.657944	4.3:+15695599	None:intergenic
AAAGTGGACGTTTACGCATT+TGG	0.333397	4.3:-15692708	MS.gene023474:CDS
AAAGTTCTCATTTGGTTACG+TGG	0.603759	4.3:-15692626	MS.gene023474:CDS
AAATGCGGCAGGAGTAACGG+AGG	0.714935	4.3:+15695420	None:intergenic
AAATGCGTAAACGTCCACTT+TGG	0.550820	4.3:+15692710	None:intergenic
AACAATTTACCTGGGTTAAC+CGG	0.343080	4.3:-15695142	MS.gene023474:CDS
AACCAAATGAGAACTTTCAT+CGG	0.543588	4.3:+15692632	None:intergenic
AACCTTTGTTTCCATGTCAA+AGG	0.490843	4.3:+15693774	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCAAATGAGAACTTTCAT+CGG	+	chr4.3:15695385-15695404	None:intergenic	30.0%
AAGAGTTTCAGAAACATATC+AGG	+	chr4.3:15694700-15694719	None:intergenic	30.0%
AAGGTCAAGTTTATAACTGA+TGG	-	chr4.3:15693526-15693545	MS.gene023474:intron	30.0%
ACACAAAAACAAAAGTTGGA+AGG	-	chr4.3:15694653-15694672	MS.gene023474:CDS	30.0%
ACTGTTGAGCATATATAAAG+TGG	-	chr4.3:15695485-15695504	MS.gene023474:CDS	30.0%
AGCTACACAAAAACAAAAGT+TGG	-	chr4.3:15694649-15694668	MS.gene023474:CDS	30.0%
CTAAGAAATAATCAGCTTCA+GGG	-	chr4.3:15693082-15693101	MS.gene023474:intron	30.0%
CTTAATGGGAATAATTTGAC+TGG	-	chr4.3:15693409-15693428	MS.gene023474:intron	30.0%
CTTCATGTGAATAAATTCAC+CGG	-	chr4.3:15692941-15692960	MS.gene023474:intron	30.0%
GGATCAATAACAATTTACCT+GGG	-	chr4.3:15692864-15692883	MS.gene023474:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	15692239	15695797	15692239	ID=MS.gene023474
chr4.3	mRNA	15692239	15695797	15692239	ID=MS.gene023474.t1;Parent=MS.gene023474
chr4.3	exon	15693553	15695797	15693553	ID=MS.gene023474.t1.exon1;Parent=MS.gene023474.t1
chr4.3	CDS	15693553	15695797	15693553	ID=cds.MS.gene023474.t1;Parent=MS.gene023474.t1
chr4.3	exon	15692239	15692750	15692239	ID=MS.gene023474.t1.exon2;Parent=MS.gene023474.t1
chr4.3	CDS	15692239	15692750	15692239	ID=cds.MS.gene023474.t1;Parent=MS.gene023474.t1

Gene Sequence

>MS.gene023474

ATGCACCAAATCTCATTCATCATCATCATCGCGATCATCGCCGCCACCTTCGTGGTCGCCGACGATGACTCCACCGTCATGCAAAGCCTTCGACAATCCCTTAAACCATCTCCTAACGGCTGGTCTTCCAATACTTCCTTCTGTCAATGGTCCGGCGTCAAATGCTCATCCGACAACCGCGTCACCGGCATAAACCTTTCCGGTCAAAACCTCGCCGGAACCCTTCCCGATAATCTCAACTCCCTCACTCAACTCACAACTCTCTATCTCCAAAACAACGCTCTCTCCGGTACTCTTCCTTCTCTCGCCAACCTCTCCTCCCTCACAGACGCCAATCTCGGCAGTAATAACTTCTCCTCCGTTACTCCTGCCGCATTTTCCGGCCTCAATTCACTCCAAACACTCTCCTTCGGAAATAACACCAACCTCTCTCCATGGACATTCCCTACTGAGTTGACTTCATCTTCCAACCTCAACACAATCGATATCAATCAAGCAAAAATCAACGGAACCTTACCAGACATTTTCGGTAGTTTCTCTAGTCTCAACACCCTTCATCTCGCATACAACAATCTCAGCGGAGGATTACCTAACTCTCTCGCTGGTTCCGGAATTCAGAGTTTTTGGATCAATAACAATTTACCTGGGTTAACCGGTTCAATCACTGTTATTTCCAACATGACGCAGTTAACTCAGGTATGGCTTCATGTGAATAAATTCACCGGTCCAATTCCAGATTTATCGCAATGCAATAGTATAAAAGATCTGCAACTTAGGGATAATCAGTTAACTGGTGTGGTTCCTGATTCTCTGGTGAGCATGTCTAGCTTGCAGAATGTTACTCTAAGAAATAATCAGCTTCAGGGACCTGTTCCGGTTTTCGGTAATAATGTGAAATATAATTCTGATGATATCAGTCCTAATAACTTTTGTAATAATAATGCATCTGAACCTTGTGATGCTAGGGTTATGGATTTGCTTCATATTGTTGGGGGATTTGGGTACCCTATTCAATTCGCGAAGGCATGGATGGGGAATGATCCTTGTAAGGGTTGGTTGTGTGTTATATGTGGTGGGGGTAAGATTACCAAGTTGAATTTCGCCAAGCAGGGTTTGCAGGGAACAATTTCCCCTGCTTTTGCCAATTTGACTGATTTGACGGCTTTGTATCTTAATGGGAATAATTTGACTGGTTCTATACCTCAGAATTTAGCTACATTGTCTCAACTTGAGACTCTTGATATCTCTAACAATAATCTATCAGGCGAGGTTCCCAAATTCTCACCAAAGGTCAAGTTTATAACTGATGGTAATGTTTGGCTTGGTAAAAATCTTGGAGGTGGAGCGCCTGGTTCTGCTCCTGGTGGAAGTCCTGCTGGATCGGACAAAGGTGCTTCGATGAAGATATTTTGGACTATTCTTATAGTGTGTCTGGTTTTGGGTTTTGTTTGTGGGGGGTGGTGGGTTTATCGGAAGTGTTATAAAGGAAGACGGTTTCGGAAATTTGCAAGGGTTGGTAATCCTGAAAATGGGGAAGGAAATGTCAAACTCGATCTTGCCAGTGTTTCAAATGGACATGGTGGTGGTGGTGCTTCGAGCGAGTTGCAAAGTCAGAGCAGTGGTGATCACCGTGATCTTCACGGTTTTGATGGAGGAAGTGGTGGAAATGCTACGATTTCGATTCATGTTCTTCGACAAGTGACAAATGATTTCAGCGATGATAACATTTTGGGAAGGGGAGGATTTGGTATTGTTTATAAAGGGGAGTTACCTGATGGAACTAAAATTGCTGTCAAGAGGATGATATCCGTCGCAAGGGGAAGCAAAGGGTTGAATGAGTTCCAAGCAGAGATCGGTGTTCTTACTAAGGTTAGGCATAGACATTTGGTTGCCCTCTTGGGATACTGCATCAATGGCAATGAGAGGCTTTTGGTGTATGAGCATATGCCTCAAGGGACATTAACGCAGCATCTGTTTGAATGTCGTGAATATGGGTACACTCCTTTGACATGGAAACAAAGGTTGATAATAGCTTTGGATGTTGGACGGGGGGTGGAATACCTGCACAGCTTAGCTCAGCAAAGCTTCATTCATAGAGACTTAAAACCATCAAATATACTATTAGGTAATGACATGAGAGCAAAGGTTGCAGATTTTGGGCTGGTTAAAAACGCACCGGACGGGAATTATTCTGTTGAGACAAAATTGGCTGGAACATTTGGATATCTTGCACCCGAGTATGCAGGTATACAAAGCTTTTGGTTTTAAGCGTGTGCCGTAATTAATTTTAAAATCGTATCTAGTACATTATTTAGTGTAGTACATTATTTAGTGATTATAGCTATAGCCTATAGGTACTGCATCAATATCATGCTCTAATGTCACGAAAATTTTGGTGGTTTGATTGAGTAGCTACACAAAAACAAAAGTTGGAAGGAGAAAAAACATGTTATTTGATCCTGATATGTTTCTGAAACTCTTTGTTGCTGCTGCTGTGCAGTTTTATTTTTTCACCTGTTTCATAAGTTTTTTTTAGTTGCATTGTGTTTTTTGTTTAATTATTAGTGGTATATAGTTGCATGCAGACATAATGTGTTGTGCCGTTTACAAATGGTTAAAAGAATCTGACCTAGCTGGTCAACGACGGTCCAAAATTAATCTCCCATATCCCCATAGATGCGGCTTCGGTTCTCCCTAAAGCCGCTAAAAATCCCACTTGGTGGTCAACACTACTCAGGATTTAGGTGGTAGTTACTCTGTCACCACTAATTTTGTTGCAAAATTTGTCTTCCCAATTTGTTCTGCTGTGGCTTGGTGCATTGACTTCTTTTTTGTTGAAATTCCTGAATTGAATGGTATTGTATTGAATCAACCAGCTGTAAAATTGACAGTGTAAAATGTGCTAAATGATGTTCACCTTTGCTATCTTATTTAAGAGTGTTAAATTATAACATATGCTTCATTCTTGTTGCATTGTGTGTGATTGATTCCTTTTTATTTATGCTAGTCTATTCCATTATTTATTAATTTAACATTGCTTCTTGTAGCTACTGGAAGAGTGACAACCAAAGTGGACGTTTACGCATTTGGAGTAGTTTTGATGGAACTGATCACAGGTAGAAAGGCATTAGATGATTCTGTACCCGATGAAAGTTCTCATTTGGTTACGTGGTTCCGTAGGGTACTGACTAACAAGGAAAACATTCCAAAGGCAATTGATCAAACTCTCAACCCGGACGAGGAAACACTGTTGAGCATATATAAAGTGGCTGAGCTGGCTGGCCATTGCACCACTCGTTCACCATACCAAAGGCCAGATATGGGGCATGCAGTGAATGTGTTGTGTCCTCTTGTGGAGCTATGGGAACCTACTACCCACACAGATGAAAGTACTAGTGCGGTTGACGATCAGATGAGTCTTACTCAAGCACTACAGAGGTGGCAAGCCAATGAAGGTACTTCAACATTCTTCAATGGCATGTCCTCACAAACACAGTCAAGTTCCACATCTAAACCTCCAGTGTTTGCAGATTCCCTTCATTCACCTGATTGCCGGTAG

Protein sequence

>MS.gene023474.t1

MHQISFIIIIAIIAATFVVADDDSTVMQSLRQSLKPSPNGWSSNTSFCQWSGVKCSSDNRVTGINLSGQNLAGTLPDNLNSLTQLTTLYLQNNALSGTLPSLANLSSLTDANLGSNNFSSVTPAAFSGLNSLQTLSFGNNTNLSPWTFPTELTSSSNLNTIDINQAKINGTLPDIFGSFSSLNTLHLAYNNLSGGLPNSLAGSGIQSFWINNNLPGLTGSITVISNMTQLTQVWLHVNKFTGPIPDLSQCNSIKDLQLRDNQLTGVVPDSLVSMSSLQNVTLRNNQLQGPVPVFGNNVKYNSDDISPNNFCNNNASEPCDARVMDLLHIVGGFGYPIQFAKAWMGNDPCKGWLCVICGGGKITKLNFAKQGLQGTISPAFANLTDLTALYLNGNNLTGSIPQNLATLSQLETLDISNNNLSGEVPKFSPKVKFITDGNVWLGKNLGGGAPGSAPGGSPAGSDKGASMKIFWTILIVCLVLGFVCGGWWVYRKCYKGRRFRKFARVGNPENGEGNVKLDLASVSNGHGGGGASSELQSQSSGDHRDLHGFDGGSGGNATISIHVLRQVTNDFSDDNILGRGGFGIVYKGELPDGTKIAVKRMISVARGSKGLNEFQAEIGVLTKVRHRHLVALLGYCINGNERLLVYEHMPQGTLTQHLFECREYGYTPLTWKQRLIIALDVGRGVEYLHSLAQQSFIHRDLKPSNILLGNDMRAKVADFGLVKNAPDGNYSVETKLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDSVPDESSHLVTWFRRVLTNKENIPKAIDQTLNPDEETLLSIYKVAELAGHCTTRSPYQRPDMGHAVNVLCPLVELWEPTTHTDESTSAVDDQMSLTQALQRWQANEGTSTFFNGMSSQTQSSSTSKPPVFADSLHSPDCR