Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023685.t1 | XP_024629356.1 | 72.6 | 631 | 24 | 3 | 1 | 482 | 1 | 631 | 1.50E-252 | 881.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023685.t1 | Q9SZL8 | 29.2 | 448 | 270 | 6 | 6 | 407 | 69 | 515 | 1.5e-59 | 231.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023685.t1 | A0A396JHA3 | 70.8 | 593 | 24 | 3 | 1 | 444 | 1 | 593 | 3.5e-230 | 807.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene023685.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023685.t1 | MTR_5g039760 | 62.105 | 190 | 57 | 2 | 1 | 183 | 1 | 182 | 1.06e-75 | 236 |
| MS.gene023685.t1 | MTR_7g074790 | 65.625 | 160 | 51 | 1 | 1 | 156 | 1 | 160 | 6.02e-69 | 220 |
| MS.gene023685.t1 | MTR_7g061980 | 83.505 | 97 | 16 | 0 | 1 | 97 | 1 | 97 | 2.51e-51 | 170 |
| MS.gene023685.t1 | MTR_4g102720 | 37.415 | 147 | 80 | 2 | 7 | 153 | 4 | 138 | 3.07e-27 | 109 |
| MS.gene023685.t1 | MTR_0558s0020 | 27.132 | 258 | 143 | 6 | 2 | 217 | 31 | 285 | 2.06e-26 | 108 |
| MS.gene023685.t1 | MTR_0402s0040 | 36.667 | 180 | 89 | 3 | 10 | 165 | 26 | 204 | 2.14e-26 | 112 |
| MS.gene023685.t1 | MTR_4g069880 | 73.529 | 68 | 18 | 0 | 1 | 68 | 1 | 68 | 1.10e-25 | 100 |
| MS.gene023685.t1 | MTR_6g051425 | 27.957 | 279 | 147 | 7 | 9 | 235 | 13 | 289 | 1.52e-24 | 104 |
| MS.gene023685.t1 | MTR_8g446020 | 32.317 | 164 | 105 | 2 | 56 | 217 | 86 | 245 | 1.23e-20 | 91.7 |
| MS.gene023685.t1 | MTR_6g090505 | 29.000 | 200 | 134 | 3 | 56 | 253 | 61 | 254 | 7.99e-20 | 91.3 |
| MS.gene023685.t1 | MTR_1g083640 | 23.361 | 244 | 142 | 6 | 2 | 203 | 46 | 286 | 3.63e-17 | 82.0 |
| MS.gene023685.t1 | MTR_6g022070 | 29.932 | 147 | 96 | 3 | 262 | 407 | 1 | 141 | 1.65e-15 | 78.2 |
| MS.gene023685.t1 | MTR_6g017200 | 43.373 | 83 | 45 | 2 | 10 | 91 | 58 | 139 | 2.32e-13 | 68.2 |
| MS.gene023685.t1 | MTR_1g086270 | 29.688 | 128 | 71 | 2 | 262 | 389 | 1 | 109 | 3.08e-13 | 66.2 |
| MS.gene023685.t1 | MTR_1g070355 | 23.246 | 228 | 146 | 4 | 16 | 217 | 80 | 304 | 2.12e-12 | 69.7 |
| MS.gene023685.t1 | MTR_2g070590 | 40.964 | 83 | 47 | 2 | 10 | 91 | 17 | 98 | 2.67e-12 | 63.9 |
| MS.gene023685.t1 | MTR_1g057920 | 40.964 | 83 | 47 | 2 | 10 | 91 | 34 | 115 | 3.71e-12 | 63.9 |
| MS.gene023685.t1 | MTR_3g058090 | 43.750 | 80 | 24 | 1 | 404 | 483 | 15 | 73 | 1.80e-11 | 61.2 |
| MS.gene023685.t1 | MTR_0337s0040 | 27.465 | 142 | 97 | 2 | 56 | 195 | 87 | 224 | 7.10e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023685.t1 | AT4G38180 | 29.241 | 448 | 270 | 6 | 6 | 407 | 69 | 515 | 1.98e-65 | 225 |
| MS.gene023685.t1 | AT4G15090 | 25.000 | 452 | 294 | 5 | 3 | 410 | 44 | 494 | 1.91e-52 | 190 |
| MS.gene023685.t1 | AT4G15090 | 25.000 | 452 | 294 | 5 | 3 | 410 | 44 | 494 | 1.91e-52 | 190 |
| MS.gene023685.t1 | AT4G15090 | 25.000 | 452 | 294 | 5 | 3 | 410 | 44 | 494 | 1.91e-52 | 190 |
| MS.gene023685.t1 | AT4G15090 | 25.000 | 452 | 294 | 5 | 3 | 410 | 44 | 494 | 1.91e-52 | 190 |
| MS.gene023685.t1 | AT4G15090 | 25.000 | 452 | 294 | 5 | 3 | 410 | 44 | 494 | 1.91e-52 | 190 |
| MS.gene023685.t1 | AT3G22170 | 26.559 | 433 | 275 | 5 | 6 | 400 | 66 | 493 | 4.72e-47 | 174 |
| MS.gene023685.t1 | AT3G22170 | 26.559 | 433 | 275 | 5 | 6 | 400 | 66 | 493 | 4.72e-47 | 174 |
| MS.gene023685.t1 | AT1G76320 | 26.351 | 444 | 267 | 8 | 14 | 410 | 1 | 431 | 1.85e-44 | 166 |
| MS.gene023685.t1 | AT1G76320 | 26.351 | 444 | 267 | 8 | 14 | 410 | 1 | 431 | 4.11e-44 | 165 |
| MS.gene023685.t1 | AT1G76320 | 26.351 | 444 | 267 | 8 | 14 | 410 | 1 | 431 | 4.29e-44 | 165 |
| MS.gene023685.t1 | AT1G76320 | 26.351 | 444 | 267 | 8 | 14 | 410 | 1 | 431 | 4.29e-44 | 165 |
| MS.gene023685.t1 | AT3G06250 | 25.799 | 407 | 252 | 7 | 9 | 391 | 189 | 569 | 2.78e-43 | 163 |
| MS.gene023685.t1 | AT3G06250 | 25.799 | 407 | 252 | 7 | 9 | 391 | 189 | 569 | 2.78e-43 | 163 |
| MS.gene023685.t1 | AT3G06250 | 25.799 | 407 | 252 | 7 | 9 | 391 | 189 | 569 | 2.78e-43 | 163 |
| MS.gene023685.t1 | AT4G19990 | 24.760 | 416 | 266 | 5 | 13 | 394 | 24 | 426 | 6.67e-41 | 156 |
| MS.gene023685.t1 | AT4G19990 | 24.760 | 416 | 266 | 5 | 13 | 394 | 24 | 426 | 6.67e-41 | 156 |
| MS.gene023685.t1 | AT4G19990 | 24.760 | 416 | 266 | 5 | 13 | 394 | 24 | 426 | 7.10e-41 | 156 |
| MS.gene023685.t1 | AT4G19990 | 24.760 | 416 | 266 | 5 | 13 | 394 | 38 | 440 | 7.53e-41 | 156 |
| MS.gene023685.t1 | AT4G19990 | 24.760 | 416 | 266 | 5 | 13 | 394 | 24 | 426 | 1.13e-40 | 155 |
| MS.gene023685.t1 | AT4G19990 | 24.760 | 416 | 266 | 5 | 13 | 394 | 24 | 426 | 1.13e-40 | 155 |
| MS.gene023685.t1 | AT5G18960 | 25.428 | 409 | 258 | 10 | 9 | 393 | 210 | 595 | 1.16e-39 | 153 |
| MS.gene023685.t1 | AT5G18960 | 25.428 | 409 | 258 | 10 | 9 | 393 | 210 | 595 | 1.16e-39 | 153 |
| MS.gene023685.t1 | AT2G27110 | 26.506 | 415 | 261 | 7 | 9 | 394 | 48 | 447 | 4.28e-39 | 151 |
| MS.gene023685.t1 | AT2G27110 | 26.506 | 415 | 261 | 7 | 9 | 394 | 48 | 447 | 4.28e-39 | 151 |
| MS.gene023685.t1 | AT1G52520 | 24.594 | 431 | 274 | 9 | 10 | 400 | 85 | 504 | 7.37e-37 | 144 |
| MS.gene023685.t1 | AT4G19990 | 25.656 | 343 | 221 | 3 | 73 | 394 | 40 | 369 | 1.03e-35 | 141 |
| MS.gene023685.t1 | AT2G27110 | 29.600 | 250 | 154 | 3 | 165 | 394 | 55 | 302 | 3.99e-34 | 136 |
| MS.gene023685.t1 | AT2G32250 | 23.821 | 403 | 265 | 7 | 13 | 394 | 41 | 422 | 2.22e-33 | 134 |
| MS.gene023685.t1 | AT2G32250 | 23.821 | 403 | 265 | 7 | 13 | 394 | 41 | 422 | 3.22e-33 | 134 |
| MS.gene023685.t1 | AT2G32250 | 23.821 | 403 | 265 | 7 | 13 | 394 | 41 | 422 | 3.22e-33 | 134 |
| MS.gene023685.t1 | AT2G32250 | 23.821 | 403 | 265 | 7 | 13 | 394 | 41 | 422 | 3.29e-33 | 134 |
| MS.gene023685.t1 | AT2G32250 | 23.821 | 403 | 265 | 7 | 13 | 394 | 41 | 422 | 3.29e-33 | 134 |
| MS.gene023685.t1 | AT2G32250 | 23.821 | 403 | 265 | 7 | 13 | 394 | 41 | 422 | 3.29e-33 | 134 |
| MS.gene023685.t1 | AT2G32250 | 23.632 | 402 | 265 | 7 | 14 | 394 | 1 | 381 | 1.70e-32 | 132 |
| MS.gene023685.t1 | AT2G32250 | 23.632 | 402 | 265 | 7 | 14 | 394 | 1 | 381 | 1.90e-32 | 131 |
| MS.gene023685.t1 | AT4G38170 | 25.856 | 263 | 170 | 2 | 168 | 409 | 24 | 282 | 1.50e-31 | 127 |
| MS.gene023685.t1 | AT1G80010 | 23.451 | 452 | 285 | 10 | 9 | 407 | 94 | 537 | 3.69e-29 | 121 |
| MS.gene023685.t1 | AT1G10240 | 23.007 | 439 | 282 | 7 | 10 | 396 | 48 | 482 | 7.72e-27 | 114 |
| MS.gene023685.t1 | AT1G10240 | 23.007 | 439 | 282 | 7 | 10 | 396 | 48 | 482 | 7.72e-27 | 114 |
| MS.gene023685.t1 | AT5G28530 | 19.463 | 447 | 274 | 10 | 5 | 377 | 50 | 484 | 1.38e-18 | 89.4 |
| MS.gene023685.t1 | AT5G28530 | 19.463 | 447 | 274 | 10 | 5 | 377 | 50 | 484 | 1.55e-18 | 89.4 |
| MS.gene023685.t1 | AT5G28530 | 19.463 | 447 | 274 | 10 | 5 | 377 | 50 | 484 | 1.55e-18 | 89.4 |
Find 0 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGAACTTAAAAAAAAAT+GGG | - | 42758:17814-17833 | MS.gene023685:intron | 10.0% |
| !! | CTTATGAACTTAAAAAAAAA+TGG | - | 42758:17813-17832 | MS.gene023685:intron | 15.0% |
| !!! | TTTTTTTTTAAGTTCATAAG+TGG | + | 42758:17813-17832 | MS.gene023685:intergenic | 15.0% |
| !! | AAAAAGAAAAAAAAAGCAAG+TGG | + | 42758:17409-17428 | MS.gene023685:intergenic | 20.0% |
| !!! | AACATATTACAAATGTGTTT+TGG | - | 42758:17296-17315 | MS.gene023685:CDS | 20.0% |
| !!! | AGAACTATATTTTAAAAAGG+TGG | - | 42758:18338-18357 | MS.gene023685:CDS | 20.0% |
| !!! | CTGAGAACTATATTTTAAAA+AGG | - | 42758:18335-18354 | MS.gene023685:CDS | 20.0% |
| !!! | CTTTTTAAAATATAGTTCTC+AGG | + | 42758:18337-18356 | MS.gene023685:intergenic | 20.0% |
| !!! | TTGCTTTTTTTTTCTTTTTC+TGG | - | 42758:17410-17429 | MS.gene023685:CDS | 20.0% |
| ! | AAAATGGAGTTAAACATCTT+GGG | - | 42758:17648-17667 | MS.gene023685:CDS | 25.0% |
| ! | GTTTGAATTGAATGATGTTA+AGG | - | 42758:18306-18325 | MS.gene023685:CDS | 25.0% |
| ! | TGAAAGAAGAAAAAGAAGTA+TGG | - | 42758:17180-17199 | MS.gene023685:intron | 25.0% |
| ! | TGACATGTTCAAGAAAATAA+TGG | - | 42758:18534-18553 | MS.gene023685:CDS | 25.0% |
| ! | TTAATATTCACGACAAATCT+TGG | - | 42758:17780-17799 | MS.gene023685:intron | 25.0% |
| ! | TTCACAAACAAAAAAGAAGA+CGG | - | 42758:16785-16804 | MS.gene023685:CDS | 25.0% |
| !! | ATATTTTCAACGACAATTGT+TGG | - | 42758:17231-17250 | MS.gene023685:CDS | 25.0% |
| !! | TCTCTGAATTTTATAGATCA+TGG | + | 42758:16988-17007 | MS.gene023685:intergenic | 25.0% |
| !!! | AATTCTAGGATATTCACATT+CGG | + | 42758:17932-17951 | MS.gene023685:intergenic | 25.0% |
| AAAAAAAGCAAGTGGTCTAT+TGG | + | 42758:17401-17420 | MS.gene023684:intergenic | 30.0% | |
| ATAGAGGTTCAGTCATATTT+GGG | - | 42758:17444-17463 | MS.gene023685:CDS | 30.0% | |
| ATATGACTGAACCTCTATAA+TGG | + | 42758:17442-17461 | MS.gene023685:intergenic | 30.0% | |
| ATTACACTTTCTCGTAAGAA+TGG | - | 42758:16926-16945 | MS.gene023685:intron | 30.0% | |
| CAAAATGGAGTTAAACATCT+TGG | - | 42758:17647-17666 | MS.gene023685:CDS | 30.0% | |
| CAAAATGGTTGAAGAATTCT+AGG | + | 42758:17946-17965 | MS.gene023685:intergenic | 30.0% | |
| CATCTGATATGCATGAAAAA+AGG | + | 42758:17266-17285 | MS.gene023685:intergenic | 30.0% | |
| GAGAAAAGATATGCATATGA+AGG | - | 42758:16860-16879 | MS.gene023685:intron | 30.0% | |
| GTTGTTTGATACATTCTTAC+AGG | - | 42758:17508-17527 | MS.gene023685:CDS | 30.0% | |
| TATAGAGGTTCAGTCATATT+TGG | - | 42758:17443-17462 | MS.gene023685:CDS | 30.0% | |
| TATGTTCTTCTTCAAAGTCA+TGG | + | 42758:16964-16983 | MS.gene023685:intergenic | 30.0% | |
| TGATATGCATGAAAAAAGGA+TGG | + | 42758:17262-17281 | MS.gene023685:intergenic | 30.0% | |
| TGTCGTGAATATTAAATTCG+TGG | + | 42758:17775-17794 | MS.gene023685:intergenic | 30.0% | |
| TGTCTCTAAGTTCATTAAAG+CGG | - | 42758:18456-18475 | MS.gene023685:CDS | 30.0% | |
| TTGTGAATATGTCATCACTA+AGG | - | 42758:18171-18190 | MS.gene023685:CDS | 30.0% | |
| ! | ACATGGCATTTGTTACAAAA+TGG | - | 42758:17632-17651 | MS.gene023685:CDS | 30.0% |
| ! | AGGGCAATTTGTTCTAATAT+CGG | + | 42758:16900-16919 | MS.gene023685:intergenic | 30.0% |
| ! | ATTCGATTTCTAGACAAGTT+AGG | + | 42758:18424-18443 | MS.gene023685:intergenic | 30.0% |
| ! | GAGAAAGTGTAATTCTTACA+GGG | + | 42758:16919-16938 | MS.gene023685:intergenic | 30.0% |
| ! | GTGTGTATATTTTTCCCATT+TGG | + | 42758:18069-18088 | MS.gene023685:intergenic | 30.0% |
| ! | TGTAGGAAGTTTGATACTTT+TGG | - | 42758:18256-18275 | MS.gene023685:intron | 30.0% |
| ! | TTTCACTAACTTGTGTACTA+CGG | + | 42758:17877-17896 | MS.gene023685:intergenic | 30.0% |
| !! | AAGCAGATTTTGAGAAACTT+TGG | - | 42758:17738-17757 | MS.gene023685:CDS | 30.0% |
| !! | TTTCCCATTTGGATTAGTAT+TGG | + | 42758:18058-18077 | MS.gene023685:intergenic | 30.0% |
| !!! | CTTTTTTCATGCATATCAGA+TGG | - | 42758:17264-17283 | MS.gene023685:CDS | 30.0% |
| !!! | TTTTGGTGATGTTGTTTCTT+TGG | - | 42758:17351-17370 | MS.gene023685:CDS | 30.0% |
| AGACAAGTGAGTCATTTAGA+TGG | - | 42758:17486-17505 | MS.gene023685:CDS | 35.0% | |
| AGCTAATGTTGGATTTACAG+AGG | - | 42758:17135-17154 | MS.gene023685:intron | 35.0% | |
| ATCACTAAGGCAAAACATGA+AGG | - | 42758:18184-18203 | MS.gene023685:CDS | 35.0% | |
| CATGATTATAGTTTCCGTGT+TGG | - | 42758:16743-16762 | MS.gene023685:CDS | 35.0% | |
| CCTCAACAACTCTTTCAAAA+TGG | + | 42758:17961-17980 | MS.gene023685:intergenic | 35.0% | |
| GATTCAGATTCATGTCTAGT+TGG | + | 42758:18148-18167 | MS.gene023685:intergenic | 35.0% | |
| GCAAGCATATGAGATTGATT+TGG | - | 42758:17048-17067 | MS.gene023685:intron | 35.0% | |
| GCACCAATACTAATCCAAAT+GGG | - | 42758:18052-18071 | MS.gene023685:CDS | 35.0% | |
| GTTGATTGGAAACCAAAGAT+TGG | - | 42758:16680-16699 | MS.gene023685:CDS | 35.0% | |
| TAATGTTGGATTTACAGAGG+TGG | - | 42758:17138-17157 | MS.gene023685:intron | 35.0% | |
| TAGAGGTTCAGTCATATTTG+GGG | - | 42758:17445-17464 | MS.gene023685:CDS | 35.0% | |
| TCAAATCCCATTCCAATCTT+TGG | + | 42758:16695-16714 | MS.gene023685:intergenic | 35.0% | |
| TGCACCAATACTAATCCAAA+TGG | - | 42758:18051-18070 | MS.gene023685:CDS | 35.0% | |
| TGGAAACCAAAGATTGGAAT+GGG | - | 42758:16686-16705 | MS.gene023685:CDS | 35.0% | |
| TGGCTCAAGTTTCTTGATAA+TGG | - | 42758:18505-18524 | MS.gene023685:CDS | 35.0% | |
| TTCTCGTAAGAATGGAAAGT+TGG | - | 42758:16934-16953 | MS.gene023685:intron | 35.0% | |
| TTGGAAACCAAAGATTGGAA+TGG | - | 42758:16685-16704 | MS.gene023685:CDS | 35.0% | |
| ! | AAATTTACTAGCCTCTTCCA+TGG | + | 42758:16720-16739 | MS.gene023685:intergenic | 35.0% |
| ! | AAGTGATGGAGTTTGAAACA+CGG | + | 42758:18231-18250 | MS.gene023685:intergenic | 35.0% |
| ! | AGAAAAAGAAGTATGGCGTA+TGG | - | 42758:17187-17206 | MS.gene023685:intron | 35.0% |
| ! | CGAGAAAGTGTAATTCTTAC+AGG | + | 42758:16920-16939 | MS.gene023685:intergenic | 35.0% |
| ! | CTTTTGGATTACGGGTATTT+TGG | - | 42758:17334-17353 | MS.gene023685:CDS | 35.0% |
| ! | TCTGGTTTCAACCATTATAG+AGG | - | 42758:17428-17447 | MS.gene023685:CDS | 35.0% |
| ! | TGGAAGAGGCTAGTAAATTT+TGG | - | 42758:16720-16739 | MS.gene023685:CDS | 35.0% |
| !! | ATGTCGATTGGTTTGTTGTA+AGG | - | 42758:16820-16839 | MS.gene023685:CDS | 35.0% |
| !! | CCATTTTGAAAGAGTTGTTG+AGG | - | 42758:17958-17977 | MS.gene023685:CDS | 35.0% |
| !! | GATTGGTTTGTTGTAAGGAA+GGG | - | 42758:16825-16844 | MS.gene023685:CDS | 35.0% |
| AAACTTGAGCCATTCTTCCT+TGG | + | 42758:18497-18516 | MS.gene023684:intergenic | 40.0% | |
| AACTTGAGCCATTCTTCCTT+GGG | + | 42758:18496-18515 | MS.gene023684:intergenic | 40.0% | |
| AATCCTCACATAAGCTTGCA+AGG | - | 42758:18014-18033 | MS.gene023685:CDS | 40.0% | |
| AATCTTGCACAACGCCATAA+CGG | + | 42758:18375-18394 | MS.gene023685:intergenic | 40.0% | |
| ACATCTTGGGAACTTGATGA+AGG | - | 42758:17661-17680 | MS.gene023685:CDS | 40.0% | |
| ACTCCATCACTTGTAGTTGT+AGG | - | 42758:18239-18258 | MS.gene023685:intron | 40.0% | |
| AGGCAAAACATGAAGGATCT+TGG | - | 42758:18191-18210 | MS.gene023685:CDS | 40.0% | |
| CATAAACCATGATGAGTCTC+GGG | + | 42758:17611-17630 | MS.gene023685:intergenic | 40.0% | |
| CATCTTGGGAACTTGATGAA+GGG | - | 42758:17662-17681 | MS.gene023685:CDS | 40.0% | |
| CTCATCATGGTTTATGCACA+TGG | - | 42758:17615-17634 | MS.gene023685:CDS | 40.0% | |
| CTTCCTACAACTACAAGTGA+TGG | + | 42758:18245-18264 | MS.gene023685:intergenic | 40.0% | |
| GCATAAACCATGATGAGTCT+CGG | + | 42758:17612-17631 | MS.gene023685:intergenic | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | + | 42758:18020-18039 | MS.gene023685:intergenic | 40.0% | |
| TAGTGTATCGTCATGTCGAT+TGG | - | 42758:16808-16827 | MS.gene023685:CDS | 40.0% | |
| TGGAATGGGATTTGATTCCA+TGG | - | 42758:16700-16719 | MS.gene023685:CDS | 40.0% | |
| TGGCATCTTCAGATGTTGAT+TGG | - | 42758:16666-16685 | MS.gene023685:CDS | 40.0% | |
| TGGGCTGCATGTTATATGAA+GGG | - | 42758:17833-17852 | MS.gene023685:intron | 40.0% | |
| ! | AACTTTTGAGCACACAAGCA+GGG | - | 42758:17107-17126 | MS.gene023685:intron | 40.0% |
| ! | ATGGCGTTGTGCAAGATTTT+AGG | - | 42758:18377-18396 | MS.gene023685:CDS | 40.0% |
| ! | ATGGGCTGCATGTTATATGA+AGG | - | 42758:17832-17851 | MS.gene023685:intron | 40.0% |
| ! | CACAGATGCTTTTGGATTAC+GGG | - | 42758:17326-17345 | MS.gene023685:CDS | 40.0% |
| ! | GCACAGATGCTTTTGGATTA+CGG | - | 42758:17325-17344 | MS.gene023685:CDS | 40.0% |
| ! | TGGCGTTGTGCAAGATTTTA+GGG | - | 42758:18378-18397 | MS.gene023685:CDS | 40.0% |
| !! | ATGAAGGGAGTGTTAACACT+TGG | - | 42758:17848-17867 | MS.gene023685:intron | 40.0% |
| !! | ATTGATTTGGCTCATGACTC+TGG | - | 42758:17061-17080 | MS.gene023685:intron | 40.0% |
| !! | CGATTGGTTTGTTGTAAGGA+AGG | - | 42758:16824-16843 | MS.gene023685:CDS | 40.0% |
| !! | TATAGTTTCCGTGTTGGCTT+CGG | - | 42758:16749-16768 | MS.gene023685:CDS | 40.0% |
| !! | TGTGCAAGATTTTAGGGGAA+AGG | - | 42758:18384-18403 | MS.gene023685:CDS | 40.0% |
| AAGCAAGTGGTCTATTGGCA+TGG | + | 42758:17396-17415 | MS.gene023684:intergenic | 45.0% | |
| AAGCATCACCCAAGGAAGAA+TGG | - | 42758:18485-18504 | MS.gene023685:CDS | 45.0% | |
| AAGTGGTCTATTGGCATGGT+TGG | + | 42758:17392-17411 | MS.gene023685:intergenic | 45.0% | |
| ACCAAGATCAAGCAATGGCA+AGG | - | 42758:17567-17586 | MS.gene023685:CDS | 45.0% | |
| AGGTTCAGTCATATTTGGGG+CGG | - | 42758:17448-17467 | MS.gene023685:CDS | 45.0% | |
| AGTATGGCGTATGGTGAGAT+TGG | - | 42758:17196-17215 | MS.gene023685:intron | 45.0% | |
| ATCTTGCACAACGCCATAAC+GGG | + | 42758:18374-18393 | MS.gene023685:intergenic | 45.0% | |
| CACTGACCAAGATCAAGCAA+TGG | - | 42758:17562-17581 | MS.gene023685:CDS | 45.0% | |
| CAGAGACAACACACATGCTT+CGG | - | 42758:17002-17021 | MS.gene023685:intron | 45.0% | |
| CCAAGATCAAGCAATGGCAA+GGG | - | 42758:17568-17587 | MS.gene023685:CDS | 45.0% | |
| GGGATTTGATTCCATGGAAG+AGG | - | 42758:16706-16725 | MS.gene023685:CDS | 45.0% | |
| GTTGTAAGGAAGGGCTAAAG+AGG | - | 42758:16834-16853 | MS.gene023685:CDS | 45.0% | |
| TAAGGAAGGGCTAAAGAGGA+AGG | - | 42758:16838-16857 | MS.gene023685:CDS | 45.0% | |
| TGGATAAGAGAAGCCCGTTA+TGG | - | 42758:18358-18377 | MS.gene023685:CDS | 45.0% | |
| TGGCTCATGACTCTGGATTA+AGG | - | 42758:17068-17087 | MS.gene023685:intron | 45.0% | |
| TGGTCAGTGAAGATCGTCTT+TGG | + | 42758:17551-17570 | MS.gene023685:intergenic | 45.0% | |
| TTTAGGGGAAAGGAGGTTGA+AGG | - | 42758:18394-18413 | MS.gene023685:CDS | 45.0% | |
| ! | CAACTTTTGAGCACACAAGC+AGG | - | 42758:17106-17125 | MS.gene023685:intron | 45.0% |
| ! | GGCGTTGTGCAAGATTTTAG+GGG | - | 42758:18379-18398 | MS.gene023685:CDS | 45.0% |
| ! | GTGTGATGCACAGATGCTTT+TGG | - | 42758:17318-17337 | MS.gene023685:CDS | 45.0% |
| !! | GCAAGATTTTAGGGGAAAGG+AGG | - | 42758:18387-18406 | MS.gene023685:CDS | 45.0% |
| CCCTTGCCATTGCTTGATCT+TGG | + | 42758:17571-17590 | MS.gene023685:intergenic | 50.0% | |
| CTCTAACTCCGAAGCCAACA+CGG | + | 42758:16760-16779 | MS.gene023685:intergenic | 50.0% | |
| CTTGGGAACTTGATGAAGGG+AGG | - | 42758:17665-17684 | MS.gene023685:CDS | 50.0% | |
| GCAGGGCATAGAGCTAATGT+TGG | - | 42758:17124-17143 | MS.gene023685:intron | 50.0% | |
| GTGATGCCCGAGACTCATCA+TGG | - | 42758:17602-17621 | MS.gene023685:CDS | 55.0% | |
| ! | GGCAACTGAAGCATCACCCA+AGG | - | 42758:18477-18496 | MS.gene023685:CDS | 55.0% |
| ! | GGCATGGTTGGTACAGTACG+TGG | + | 42758:17380-17399 | MS.gene023685:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42758 | gene | 16665 | 18570 | 16665 | ID=MS.gene023685 |
| 42758 | mRNA | 16665 | 18570 | 16665 | ID=MS.gene023685.t1;Parent=MS.gene023685 |
| 42758 | exon | 18297 | 18570 | 18297 | ID=MS.gene023685.t1.exon1;Parent=MS.gene023685.t1 |
| 42758 | CDS | 18297 | 18570 | 18297 | ID=cds.MS.gene023685.t1;Parent=MS.gene023685.t1 |
| 42758 | exon | 17855 | 18230 | 17855 | ID=MS.gene023685.t1.exon2;Parent=MS.gene023685.t1 |
| 42758 | CDS | 17855 | 18230 | 17855 | ID=cds.MS.gene023685.t1;Parent=MS.gene023685.t1 |
| 42758 | exon | 17200 | 17787 | 17200 | ID=MS.gene023685.t1.exon3;Parent=MS.gene023685.t1 |
| 42758 | CDS | 17200 | 17787 | 17200 | ID=cds.MS.gene023685.t1;Parent=MS.gene023685.t1 |
| 42758 | exon | 16665 | 16878 | 16665 | ID=MS.gene023685.t1.exon4;Parent=MS.gene023685.t1 |
| 42758 | CDS | 16665 | 16878 | 16665 | ID=cds.MS.gene023685.t1;Parent=MS.gene023685.t1 |
| Gene Sequence |
| Protein sequence |
