Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023697.t1 | XP_013442633.1 | 98.2 | 274 | 5 | 0 | 1 | 274 | 1 | 274 | 2.80E-150 | 541.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023697.t1 | Q8H0W3 | 57.2 | 304 | 94 | 6 | 1 | 274 | 1 | 298 | 2.4e-81 | 303.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023697.t1 | D2CGQ1 | 98.2 | 274 | 5 | 0 | 1 | 274 | 1 | 274 | 2.0e-150 | 541.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene023697.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023697.t1 | MTR_0123s0070 | 98.175 | 274 | 5 | 0 | 1 | 274 | 1 | 274 | 0.0 | 558 |
MS.gene023697.t1 | MTR_0123s0070 | 98.175 | 274 | 5 | 0 | 1 | 274 | 1 | 274 | 0.0 | 558 |
MS.gene023697.t1 | MTR_8g028655 | 57.047 | 298 | 104 | 6 | 1 | 274 | 1 | 298 | 7.06e-105 | 308 |
MS.gene023697.t1 | MTR_1g067000 | 56.735 | 245 | 95 | 5 | 32 | 272 | 28 | 265 | 2.15e-84 | 254 |
MS.gene023697.t1 | MTR_7g118330 | 53.509 | 114 | 43 | 2 | 28 | 131 | 4 | 117 | 2.05e-25 | 105 |
MS.gene023697.t1 | MTR_6g477860 | 49.565 | 115 | 47 | 4 | 39 | 144 | 46 | 158 | 4.37e-25 | 103 |
MS.gene023697.t1 | MTR_3g064500 | 53.922 | 102 | 39 | 1 | 30 | 123 | 37 | 138 | 2.89e-23 | 97.4 |
MS.gene023697.t1 | MTR_5g076960 | 57.732 | 97 | 33 | 2 | 35 | 123 | 28 | 124 | 2.99e-23 | 98.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023697.t1 | AT5G52660 | 59.211 | 304 | 88 | 6 | 1 | 274 | 1 | 298 | 3.10e-112 | 327 |
MS.gene023697.t1 | AT5G52660 | 59.406 | 303 | 88 | 6 | 1 | 274 | 1 | 297 | 9.85e-112 | 325 |
MS.gene023697.t1 | AT4G01280 | 56.757 | 296 | 99 | 9 | 1 | 274 | 1 | 289 | 5.89e-100 | 295 |
MS.gene023697.t1 | AT4G01280 | 56.566 | 297 | 99 | 9 | 1 | 274 | 1 | 290 | 8.44e-100 | 294 |
MS.gene023697.t1 | AT1G01520 | 52.817 | 284 | 105 | 5 | 7 | 273 | 5 | 276 | 3.73e-94 | 279 |
MS.gene023697.t1 | AT1G01520 | 52.817 | 284 | 105 | 5 | 7 | 273 | 5 | 276 | 5.58e-94 | 279 |
MS.gene023697.t1 | AT3G09600 | 54.023 | 261 | 115 | 2 | 15 | 272 | 8 | 266 | 7.16e-86 | 258 |
MS.gene023697.t1 | AT3G09600 | 54.023 | 261 | 115 | 2 | 15 | 272 | 8 | 266 | 8.60e-86 | 258 |
MS.gene023697.t1 | AT3G09600 | 54.023 | 261 | 115 | 2 | 15 | 272 | 8 | 266 | 8.60e-86 | 258 |
MS.gene023697.t1 | AT3G09600 | 54.023 | 261 | 115 | 2 | 15 | 272 | 8 | 266 | 8.89e-86 | 258 |
MS.gene023697.t1 | AT3G09600 | 54.023 | 261 | 115 | 2 | 15 | 272 | 8 | 266 | 8.89e-86 | 258 |
MS.gene023697.t1 | AT1G01520 | 51.504 | 266 | 100 | 5 | 7 | 255 | 5 | 258 | 6.38e-83 | 249 |
MS.gene023697.t1 | AT1G01520 | 51.504 | 266 | 100 | 5 | 7 | 255 | 5 | 258 | 6.38e-83 | 249 |
MS.gene023697.t1 | AT5G02840 | 54.694 | 245 | 96 | 4 | 38 | 272 | 36 | 275 | 5.94e-82 | 248 |
MS.gene023697.t1 | AT5G02840 | 54.694 | 245 | 96 | 4 | 38 | 272 | 36 | 275 | 5.94e-82 | 248 |
MS.gene023697.t1 | AT5G02840 | 54.000 | 250 | 100 | 4 | 33 | 272 | 31 | 275 | 7.06e-82 | 248 |
MS.gene023697.t1 | AT5G02840 | 53.070 | 228 | 92 | 4 | 38 | 255 | 36 | 258 | 1.19e-70 | 219 |
MS.gene023697.t1 | AT5G02840 | 51.931 | 233 | 97 | 4 | 33 | 255 | 31 | 258 | 4.89e-70 | 218 |
MS.gene023697.t1 | AT3G09600 | 51.923 | 208 | 95 | 2 | 68 | 272 | 5 | 210 | 3.43e-62 | 196 |
MS.gene023697.t1 | AT3G09600 | 51.923 | 208 | 95 | 2 | 68 | 272 | 5 | 210 | 3.43e-62 | 196 |
MS.gene023697.t1 | AT3G09600 | 51.923 | 208 | 95 | 2 | 68 | 272 | 5 | 210 | 4.43e-62 | 196 |
MS.gene023697.t1 | AT3G09600 | 51.923 | 208 | 95 | 2 | 68 | 272 | 5 | 210 | 4.43e-62 | 196 |
MS.gene023697.t1 | AT1G01520 | 40.714 | 140 | 78 | 2 | 137 | 273 | 55 | 192 | 1.14e-26 | 103 |
MS.gene023697.t1 | AT5G37260 | 58.163 | 98 | 37 | 1 | 30 | 123 | 16 | 113 | 3.97e-26 | 104 |
MS.gene023697.t1 | AT5G17300 | 53.608 | 97 | 37 | 1 | 35 | 123 | 40 | 136 | 2.57e-25 | 103 |
MS.gene023697.t1 | AT1G18330 | 53.191 | 94 | 36 | 1 | 39 | 124 | 39 | 132 | 6.23e-24 | 99.4 |
MS.gene023697.t1 | AT1G01060 | 55.844 | 77 | 34 | 0 | 32 | 108 | 6 | 82 | 1.04e-23 | 100 |
MS.gene023697.t1 | AT1G01060 | 55.844 | 77 | 34 | 0 | 32 | 108 | 6 | 82 | 1.07e-23 | 100 |
MS.gene023697.t1 | AT1G01060 | 55.844 | 77 | 34 | 0 | 32 | 108 | 6 | 82 | 1.07e-23 | 100 |
MS.gene023697.t1 | AT1G01060 | 55.844 | 77 | 34 | 0 | 32 | 108 | 6 | 82 | 1.07e-23 | 100 |
MS.gene023697.t1 | AT1G01060 | 55.844 | 77 | 34 | 0 | 32 | 108 | 6 | 82 | 1.07e-23 | 100 |
MS.gene023697.t1 | AT1G01060 | 55.844 | 77 | 34 | 0 | 32 | 108 | 6 | 82 | 1.07e-23 | 100 |
MS.gene023697.t1 | AT3G10113 | 53.191 | 94 | 36 | 1 | 39 | 124 | 54 | 147 | 1.09e-23 | 98.6 |
MS.gene023697.t1 | AT1G18330 | 53.191 | 94 | 36 | 1 | 39 | 124 | 65 | 158 | 1.18e-23 | 99.0 |
MS.gene023697.t1 | AT2G46830 | 62.857 | 70 | 26 | 0 | 31 | 100 | 5 | 74 | 1.44e-23 | 100 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
42767 | gene | 35645 | 43219 | 35645 | ID=MS.gene023697 |
42767 | mRNA | 35645 | 43219 | 35645 | ID=MS.gene023697.t1;Parent=MS.gene023697 |
42767 | exon | 35645 | 35844 | 35645 | ID=MS.gene023697.t1.exon1;Parent=MS.gene023697.t1 |
42767 | CDS | 35645 | 35844 | 35645 | ID=cds.MS.gene023697.t1;Parent=MS.gene023697.t1 |
42767 | exon | 39887 | 39944 | 39887 | ID=MS.gene023697.t1.exon2;Parent=MS.gene023697.t1 |
42767 | CDS | 39887 | 39944 | 39887 | ID=cds.MS.gene023697.t1;Parent=MS.gene023697.t1 |
42767 | exon | 41459 | 41582 | 41459 | ID=MS.gene023697.t1.exon3;Parent=MS.gene023697.t1 |
42767 | CDS | 41459 | 41582 | 41459 | ID=cds.MS.gene023697.t1;Parent=MS.gene023697.t1 |
42767 | exon | 41677 | 41844 | 41677 | ID=MS.gene023697.t1.exon4;Parent=MS.gene023697.t1 |
42767 | CDS | 41677 | 41844 | 41677 | ID=cds.MS.gene023697.t1;Parent=MS.gene023697.t1 |
42767 | exon | 41993 | 42094 | 41993 | ID=MS.gene023697.t1.exon5;Parent=MS.gene023697.t1 |
42767 | CDS | 41993 | 42094 | 41993 | ID=cds.MS.gene023697.t1;Parent=MS.gene023697.t1 |
42767 | exon | 42839 | 42948 | 42839 | ID=MS.gene023697.t1.exon6;Parent=MS.gene023697.t1 |
42767 | CDS | 42839 | 42948 | 42839 | ID=cds.MS.gene023697.t1;Parent=MS.gene023697.t1 |
42767 | exon | 43160 | 43219 | 43160 | ID=MS.gene023697.t1.exon7;Parent=MS.gene023697.t1 |
42767 | CDS | 43160 | 43219 | 43160 | ID=cds.MS.gene023697.t1;Parent=MS.gene023697.t1 |
Gene Sequence |
Protein sequence |