AlfalfaGEDB | MS.gene023775

M. sativa cultivar XinJiangDaYe / MS.gene023775

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF12799.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023775.t1	XP_003615451.2	93.4	605	39	1	1	605	1	604	2.90E-272	947.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023775.t1	Q9C9Y8	53.6	614	251	8	7	589	5	615	3.1e-134	480.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023775.t1	G7KDA7	93.4	605	39	1	1	605	1	604	2.1e-272	947.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023775.t1	MTR_5g068210	93.884	605	36	1	1	605	1	604	0.0	1105
MS.gene023775.t1	MTR_3g093710	67.661	637	169	11	1	605	1	632	0.0	807
MS.gene023775.t1	MTR_3g062500	55.962	629	240	7	3	600	26	648	0.0	660
MS.gene023775.t1	MTR_3g062500	55.962	629	240	7	3	600	16	638	0.0	660
MS.gene023775.t1	MTR_5g075630	56.459	627	237	9	1	600	22	639	0.0	640
MS.gene023775.t1	MTR_7g073710	52.104	618	255	11	1	589	2	607	0.0	586
MS.gene023775.t1	MTR_8g099195	45.528	615	282	14	25	605	18	613	1.80e-175	512
MS.gene023775.t1	MTR_5g009660	45.634	607	298	13	6	603	4	587	5.66e-173	504
MS.gene023775.t1	MTR_3g090660	45.016	622	293	15	10	602	6	607	3.89e-166	488
MS.gene023775.t1	MTR_4g113100	47.557	614	273	15	28	602	28	631	4.50e-166	489

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023775.t1	AT5G58300	54.488	635	237	11	1	589	2	630	0.0	629
MS.gene023775.t1	AT5G58300	54.488	635	237	11	1	589	2	630	0.0	629
MS.gene023775.t1	AT5G58300	54.488	635	237	11	1	589	2	630	0.0	629
MS.gene023775.t1	AT3G08680	54.309	615	247	8	6	589	4	615	0.0	628
MS.gene023775.t1	AT3G08680	54.309	615	247	8	6	589	4	615	0.0	628
MS.gene023775.t1	AT5G05160	47.360	644	282	14	6	605	8	638	0.0	565
MS.gene023775.t1	AT2G26730	47.276	624	274	13	16	592	8	623	1.26e-177	518
MS.gene023775.t1	AT4G23740	44.283	621	294	16	25	604	24	633	4.86e-171	501
MS.gene023775.t1	AT4G23740	44.283	621	294	16	25	604	24	633	4.86e-171	501
MS.gene023775.t1	AT1G64210	42.492	626	274	18	3	589	4	582	3.46e-147	438

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Find 137 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACATACAAGGCTAAAT+TGG	0.296548	5.4:+53346249	MS.gene023775:CDS
AACAAGAAGTTTCTCATCTT+TGG	0.154443	5.4:-53346407	None:intergenic
AACATACAAGGCTAAATTGG+AGG	0.559738	5.4:+53346252	MS.gene023775:CDS
AACATAGGAAACCAGGGTGA+AGG	0.588309	5.4:+53346911	MS.gene023775:intron
AACCCTTTAATCCAATTCCC+GGG	0.564425	5.4:-53345499	None:intergenic
AAGAGTGATGTTTACAGCTT+TGG	0.359415	5.4:+53347193	MS.gene023775:CDS
AAGATTCCATTAGGATATTC+TGG	0.250801	5.4:+53347244	MS.gene023775:CDS
AAGCCTTCATCAAGTCTTCA+AGG	0.406021	5.4:-53346195	None:intergenic
AAGCTATGGAACAACATACA+AGG	0.609906	5.4:+53346240	MS.gene023775:CDS
AAGGAAGAACTCCATTAAAC+TGG	0.394903	5.4:+53346930	MS.gene023775:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACATACAAGGCTAAAT+TGG	+	chr5.4:53346249-53346268	MS.gene023775:CDS	30.0%
AACAAGAAGTTTCTCATCTT+TGG	-	chr5.4:53346410-53346429	None:intergenic	30.0%
AAGATTCCATTAGGATATTC+TGG	+	chr5.4:53347244-53347263	MS.gene023775:CDS	30.0%
ATGAAGCTTAGAAGAAGAAA+TGG	-	chr5.4:53345299-53345318	None:intergenic	30.0%
CAAAACTATGAGAGAAAGAA+AGG	-	chr5.4:53346008-53346027	None:intergenic	30.0%
CTTCAATACAATAACTTCAC+AGG	+	chr5.4:53345647-53345666	MS.gene023775:CDS	30.0%
CTTTCCTTTAACTCTTTCTT+TGG	+	chr5.4:53345713-53345732	MS.gene023775:CDS	30.0%
GAACAAATTGTTCTTCTTTG+AGG	+	chr5.4:53346153-53346172	MS.gene023775:CDS	30.0%
GAATAACAGTTGTGGTTAAA+AGG	+	chr5.4:53346278-53346297	MS.gene023775:CDS	30.0%
GTTATTCCAGTTCAATCTTA+AGG	-	chr5.4:53345405-53345424	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	53345272	53347534	53345272	ID=MS.gene023775
chr5.4	mRNA	53345272	53347534	53345272	ID=MS.gene023775.t1;Parent=MS.gene023775
chr5.4	exon	53345272	53346472	53345272	ID=MS.gene023775.t1.exon1;Parent=MS.gene023775.t1
chr5.4	CDS	53345272	53346472	53345272	ID=cds.MS.gene023775.t1;Parent=MS.gene023775.t1
chr5.4	exon	53346918	53347534	53346918	ID=MS.gene023775.t1.exon2;Parent=MS.gene023775.t1
chr5.4	CDS	53346918	53347534	53346918	ID=cds.MS.gene023775.t1;Parent=MS.gene023775.t1

Gene Sequence

>MS.gene023775

ATGAAGTACCATTTCTTCATTGCTCCATTTCTTCTTCTAAGCTTCATATCATCTCTCTTTAACTTGACTTTAGCTGACTTAATATCAGACAAAAATTCTCTCCTTGAATTCTCTTCTACTCTCCCACATGCCTTAAGATTGAACTGGAATAACTCAACTCCTATTTGCACTTCATGGATTGGCATAACTTGCAACCGAAATGAAACTAATGTCATAAGCATCCATCTCCCGGGAATTGGATTAAAGGGTTCCATTCCAAACAACAGCAGCCTAGGAAGACTTGATTCCCTTAGAATCCTAAGCCTTCATTCCAACGAACTTAGTGGAAATCTACCTTCTAACATTCTCTCTATTCCTTCACTTCAATATGTTAATCTTCAATACAATAACTTCACAGGCCTAATCCCTTCTTCCATCTCCTCAAAACTCATTGCATTGGATCTTTCCTTTAACTCTTTCTTTGGAGCTATTCCTATATTCAACCTTACTAGGCTAAAATACTTGAATTTGAGCTTTAATAACTTGAATGGTTCAATTCCATTTTCAATTAATCATTTTCCTTACACTTCTTTTGTTGGAAACTCTCTCTTATGTGGTTCACCTCTCAAAAATTGTTCCACAATCTCTCCTTCTCCATCTCCTTCTCCGTCAACTACTCGATATCATAAGTCTACAACTTCAAAGAAATTCTTTGGAGTAGCTTCTATACTTGCTTTAGCAATTGGAGGAATAGCCTTTCTTTCTCTCATAGTTTTGGTGATCTTTGTGTGTTTTTTGAAGAAGAGAAAGAGTGACAGCAGTGATGATATACCGAAAGGAAAGACGAAGAATGAGGATTCGATTTCAAAAAGTTTTGAGAGTGAAGTTTTGGAGCGTGAAAGGAACAAATTGTTCTTCTTTGAGGACTGTTCTTATAGTTTTAACCTTGAAGACTTGATGAAGGCTTCAGCTGAAGTACTTGGAAAAGGAAGCTATGGAACAACATACAAGGCTAAATTGGAGGAAGGAATAACAGTTGTGGTTAAAAGGTTACGAGAAGTTGTGGTTGGAAAGAAGGAGTTTGAGCAACAGATGGAGGTTGTTGGAAGAATTGGAAGACATCCTAATGTCATACCACTTAGAGCTTATTACTATTCCAAAGATGAGAAACTTCTTGTTTATGACTACATGCTAGGTGGAAGCTTGTTTTCATTACTTCATGGTATGTTTTTCATTCATACATTTCTCTCTTTTTGTTTCATTAGTCCATAATGTGTTTCTTTTTCATCGTTTTTTGACTGTATTAGATTTAATTAACTACTCTTGTGAAAAGTAAACCGAAATGTTAAACTTAAAGATTAGATCTTTACATGAGCATAAAGTAACTTCTATAGCAAAAAACAGTCTGCGACAGCAATTGTTGCCGTGATATCAGGGCTTTTGATGTCGGTATGAAAACATTGCGACAGCAAGAGTAACTGTATCAAACATATTTGACGACGATTTTTCCACAATATCAAGGATAGTCGCATGGTTACAACACGATCCTAACCCAAGTTTAAAACATTGGTGTATATTAGACACAATCAATAATATGAAACATAACATGACTTACAATGCCTATTGTTCTATAATTCTAATATGTACTCAATTTTTAAACAACATAGGAAACCAGGGTGAAGGAAGAACTCCATTAAACTGGAATTCAAGAATGAAGATTGTGCTGGGAGCTGCCAAAGGAATTGCTTCCATCCACAAAGAAGGAGGTCCAAAATTTATTCATGGCAACATCAAGTCAACCAATGTACTCATAACACAAGAACTCGATGGTTGCATCGCTGATGTTGGACTTACTCCCCTTATGAACACCTTATCAACCATGTCAAGATCCAATGGATACCGTGCTCCAGAAGTAACCGAATCAAGGAAGATTGCCACTCAGAAGAGTGATGTTTACAGCTTTGGTGTAATCCTTCTTGAAATGCTTACAGGGAAGATTCCATTAGGATATTCTGGTTATGAACATGACATGGTTGATCTTCCAAGGTGGGTTAGGTCTGTGGTTCACGAAGAATGGACGGCTGAAGTTTTCGATGAGGAGATGATTAGAGGTGGAGAGTATGTTGAAGAGGAGATGGTGCATATGCTTCAGATTGCATTGGCTTGTGTGTCAAAGGTGGTAGATAATAGGCCAACAATGGATGAAGTTGTTAGAAACATAGTGGAAATTAGGCACCCTGAGTTGAAGAAAAGTACATCTTCTGAATCTGAATCTAATGTATAA

Protein sequence

>MS.gene023775.t1

MKYHFFIAPFLLLSFISSLFNLTLADLISDKNSLLEFSSTLPHALRLNWNNSTPICTSWIGITCNRNETNVISIHLPGIGLKGSIPNNSSLGRLDSLRILSLHSNELSGNLPSNILSIPSLQYVNLQYNNFTGLIPSSISSKLIALDLSFNSFFGAIPIFNLTRLKYLNLSFNNLNGSIPFSINHFPYTSFVGNSLLCGSPLKNCSTISPSPSPSPSTTRYHKSTTSKKFFGVASILALAIGGIAFLSLIVLVIFVCFLKKRKSDSSDDIPKGKTKNEDSISKSFESEVLERERNKLFFFEDCSYSFNLEDLMKASAEVLGKGSYGTTYKAKLEEGITVVVKRLREVVVGKKEFEQQMEVVGRIGRHPNVIPLRAYYYSKDEKLLVYDYMLGGSLFSLLHGNQGEGRTPLNWNSRMKIVLGAAKGIASIHKEGGPKFIHGNIKSTNVLITQELDGCIADVGLTPLMNTLSTMSRSNGYRAPEVTESRKIATQKSDVYSFGVILLEMLTGKIPLGYSGYEHDMVDLPRWVRSVVHEEWTAEVFDEEMIRGGEYVEEEMVHMLQIALACVSKVVDNRPTMDEVVRNIVEIRHPELKKSTSSESESNV