Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023841.t1 | XP_003623892.1 | 99.4 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 2.20E-86 | 328.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023841.t1 | Q1ECF5 | 72.4 | 174 | 46 | 1 | 1 | 174 | 1 | 172 | 1.8e-73 | 276.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023841.t1 | G7L3J0 | 99.4 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 1.6e-86 | 328.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene023841.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023841.t1 | MTR_7g076720 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.36e-155 | 429 |
| MS.gene023841.t1 | MTR_8g031490 | 77.295 | 207 | 36 | 4 | 1 | 199 | 1 | 204 | 1.10e-110 | 315 |
| MS.gene023841.t1 | MTR_3g070050 | 61.053 | 190 | 70 | 2 | 1 | 186 | 1 | 190 | 6.13e-86 | 252 |
| MS.gene023841.t1 | MTR_8g097300 | 52.830 | 212 | 96 | 2 | 1 | 212 | 1 | 208 | 1.17e-73 | 222 |
| MS.gene023841.t1 | MTR_3g070050 | 59.864 | 147 | 55 | 2 | 44 | 186 | 2 | 148 | 1.37e-62 | 191 |
| MS.gene023841.t1 | MTR_3g070050 | 44.444 | 81 | 45 | 0 | 3 | 83 | 61 | 141 | 1.74e-19 | 81.6 |
| MS.gene023841.t1 | MTR_1g017950 | 50.857 | 175 | 82 | 2 | 1 | 171 | 1 | 175 | 1.81e-60 | 188 |
| MS.gene023841.t1 | MTR_4g106800 | 47.977 | 173 | 83 | 2 | 2 | 169 | 3 | 173 | 3.81e-56 | 176 |
| MS.gene023841.t1 | MTR_4g106800 | 43.056 | 72 | 41 | 0 | 3 | 74 | 103 | 174 | 7.37e-15 | 70.1 |
| MS.gene023841.t1 | MTR_3g070033 | 55.882 | 68 | 30 | 0 | 119 | 186 | 6 | 73 | 1.69e-25 | 94.7 |
| MS.gene023841.t1 | MTR_3g070033 | 45.161 | 62 | 34 | 0 | 22 | 83 | 5 | 66 | 1.18e-13 | 63.9 |
| MS.gene023841.t1 | MTR_1g106100 | 37.037 | 108 | 64 | 2 | 59 | 164 | 20 | 125 | 1.92e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023841.t1 | AT2G45800 | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 3.87e-106 | 305 |
| MS.gene023841.t1 | AT1G01780 | 71.144 | 201 | 53 | 2 | 1 | 198 | 1 | 199 | 5.74e-106 | 303 |
| MS.gene023841.t1 | AT3G61230 | 69.811 | 212 | 59 | 3 | 2 | 209 | 3 | 213 | 1.75e-104 | 300 |
| MS.gene023841.t1 | AT2G39900 | 64.286 | 182 | 62 | 1 | 1 | 179 | 1 | 182 | 4.03e-90 | 263 |
| MS.gene023841.t1 | AT3G55770 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.40e-89 | 261 |
| MS.gene023841.t1 | AT3G55770 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.40e-89 | 261 |
| MS.gene023841.t1 | AT3G55770 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.40e-89 | 261 |
| MS.gene023841.t1 | AT3G55770 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.40e-89 | 261 |
| MS.gene023841.t1 | AT3G55770 | 54.167 | 216 | 63 | 2 | 1 | 180 | 1 | 216 | 3.21e-81 | 242 |
| MS.gene023841.t1 | AT2G45800 | 66.258 | 163 | 55 | 0 | 46 | 208 | 15 | 177 | 4.99e-75 | 225 |
| MS.gene023841.t1 | AT2G45800 | 50.617 | 81 | 40 | 0 | 3 | 83 | 68 | 148 | 3.70e-22 | 89.7 |
| MS.gene023841.t1 | AT1G10200 | 50.276 | 181 | 86 | 2 | 1 | 177 | 1 | 181 | 2.09e-61 | 190 |
| MS.gene023841.t1 | AT3G55770 | 67.769 | 121 | 37 | 1 | 1 | 119 | 1 | 121 | 2.67e-56 | 175 |
| MS.gene023841.t1 | AT3G55770 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 5.82e-23 | 90.5 |
| MS.gene023841.t1 | AT3G55770 | 63.780 | 127 | 42 | 2 | 1 | 123 | 1 | 127 | 1.97e-53 | 168 |
| MS.gene023841.t1 | AT3G55770 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 3.21e-23 | 90.9 |
| MS.gene023841.t1 | AT1G10200 | 47.059 | 136 | 68 | 2 | 46 | 177 | 4 | 139 | 3.81e-40 | 134 |
| MS.gene023841.t1 | AT1G10200 | 50.000 | 72 | 36 | 0 | 3 | 74 | 61 | 132 | 1.21e-17 | 76.6 |
Find 44 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGAAAAGTTGTTCAAAA+TGG | 0.152912 | 7.1:-26468880 | None:intergenic |
| GCCTGTTCCTCAGTTTCTTC+TGG | 0.236294 | 7.1:-26470106 | None:intergenic |
| CTTGAAAAGTTGTTCAAAAT+GGG | 0.287191 | 7.1:-26468879 | None:intergenic |
| TCATCCTCATCAGCTGGTTC+AGG | 0.337166 | 7.1:-26470073 | None:intergenic |
| TGAGAAGATAAATGAGTTGA+TGG | 0.377988 | 7.1:+26469101 | MS.gene023841:CDS |
| TCTTCCTATGCTGCACTAGA+TGG | 0.380773 | 7.1:+26469947 | MS.gene023841:CDS |
| CAAAATGGGGCTTGCAATAG+AGG | 0.393896 | 7.1:-26468865 | None:intergenic |
| ACCAGAAGAAACTGAGGAAC+AGG | 0.395424 | 7.1:+26470105 | MS.gene023841:CDS |
| GTTACCACAAGACTTGCTTT+AGG | 0.406861 | 7.1:+26469894 | MS.gene023841:CDS |
| TCATCAGCTGGTTCAGGTGG+TGG | 0.409594 | 7.1:-26470067 | None:intergenic |
| AACTGTTTATCCTTTGGAAA+AGG | 0.417247 | 7.1:+26469447 | MS.gene023841:CDS |
| GATGCCTCATCCTCATCAGC+TGG | 0.427885 | 7.1:-26470079 | None:intergenic |
| GAAAATGATGCTTGCAATAG+AGG | 0.440602 | 7.1:-26469973 | None:intergenic |
| GTTGATTTGTTAACTCTTGA+AGG | 0.447636 | 7.1:+26468270 | MS.gene023841:CDS |
| AATTTCAGCAAGAACTTTCA+AGG | 0.447985 | 7.1:+26468911 | MS.gene023841:CDS |
| CTTTGTGAAATAGATGTCAT+TGG | 0.477228 | 7.1:+26469862 | MS.gene023841:intron |
| GAACATAGAGGAGAGTCTAC+TGG | 0.477378 | 7.1:-26469389 | None:intergenic |
| ACTTGCTTTAGGTGTGCTCA+TGG | 0.497010 | 7.1:+26469905 | MS.gene023841:CDS |
| GATGAGTACTTACTCGTCAA+TGG | 0.501960 | 7.1:+26468835 | MS.gene023841:intron |
| CTTAAAATGCACTCACTGCA+AGG | 0.503886 | 7.1:+26468314 | MS.gene023841:CDS |
| TCCTCATCAGCTGGTTCAGG+TGG | 0.506548 | 7.1:-26470070 | None:intergenic |
| GAAATAGATGTCATTGGAAG+GGG | 0.521645 | 7.1:+26469868 | MS.gene023841:intron |
| GACACCATCTAGTGCAGCAT+AGG | 0.529057 | 7.1:-26469951 | None:intergenic |
| CAGCATAGGAAGAATGTGTA+AGG | 0.533785 | 7.1:-26469937 | None:intergenic |
| GTGAAATAGATGTCATTGGA+AGG | 0.534845 | 7.1:+26469866 | MS.gene023841:intron |
| TGAAATAGATGTCATTGGAA+GGG | 0.539587 | 7.1:+26469867 | MS.gene023841:intron |
| TTGAAAAGTTGTTCAAAATG+GGG | 0.540325 | 7.1:-26468878 | None:intergenic |
| AACATAGAGGAGAGTCTACT+GGG | 0.541859 | 7.1:-26469388 | None:intergenic |
| AACAACAAAATGTCATTCAC+AGG | 0.544997 | 7.1:+26468204 | None:intergenic |
| TCACTGCAAGGGAAATCTTA+CGG | 0.550486 | 7.1:+26468326 | MS.gene023841:CDS |
| AGCTGGTTCAGGTGGTGGAG+TGG | 0.554754 | 7.1:-26470062 | None:intergenic |
| TTGTGACAAGACTGTTTATG+TGG | 0.560240 | 7.1:+26468248 | MS.gene023841:CDS |
| ACCACCTGAACCAGCTGATG+AGG | 0.566047 | 7.1:+26470069 | MS.gene023841:CDS |
| TGAACCAGCTGATGAGGATG+AGG | 0.566240 | 7.1:+26470075 | MS.gene023841:CDS |
| TAAAGTTCCACTGAACATAG+AGG | 0.599123 | 7.1:-26469401 | None:intergenic |
| TTAAAATGCACTCACTGCAA+GGG | 0.603835 | 7.1:+26468315 | MS.gene023841:CDS |
| AGTACTTACTCGTCAATGGA+TGG | 0.612038 | 7.1:+26468839 | MS.gene023841:CDS |
| TGCTTTAGGTGTGCTCATGG+AGG | 0.614156 | 7.1:+26469908 | MS.gene023841:CDS |
| AGACTCTCCTCTATGTTCAG+TGG | 0.619328 | 7.1:+26469394 | MS.gene023841:CDS |
| AGGAACTCTTGATAAATGCA+AGG | 0.635782 | 7.1:+26468224 | MS.gene023841:CDS |
| ACAGGCAGAAGAAAAGTCTG+AGG | 0.636569 | 7.1:+26470123 | MS.gene023841:CDS |
| ATCAAAACCAGAAGAAACTG+AGG | 0.663705 | 7.1:+26470099 | MS.gene023841:CDS |
| CATAGGAAGAATGTGTAAGG+TGG | 0.667933 | 7.1:-26469934 | None:intergenic |
| CACACCTAAAGCAAGTCTTG+TGG | 0.697099 | 7.1:-26469898 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTAGTTGAAATTTAAA+TGG | - | chr7.1:26469611-26469630 | None:intergenic | 10.0% |
| !! | TCATTACAAAAATTAAATTA+TGG | - | chr7.1:26468714-26468733 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | - | chr7.1:26469293-26469312 | None:intergenic | 10.0% |
| !!! | ACAGAAAATTTTTATATTAT+CGG | + | chr7.1:26469194-26469213 | MS.gene023841:intron | 10.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | + | chr7.1:26468473-26468492 | MS.gene023841:intron | 15.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | - | chr7.1:26468707-26468726 | None:intergenic | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | + | chr7.1:26469267-26469286 | MS.gene023841:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | - | chr7.1:26469143-26469162 | None:intergenic | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | + | chr7.1:26469054-26469073 | MS.gene023841:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | + | chr7.1:26468502-26468521 | MS.gene023841:intron | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | + | chr7.1:26468973-26468992 | MS.gene023841:intron | 20.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | + | chr7.1:26468493-26468512 | MS.gene023841:intron | 20.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | - | chr7.1:26469538-26469557 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | - | chr7.1:26469322-26469341 | None:intergenic | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | + | chr7.1:26468525-26468544 | MS.gene023841:intron | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | - | chr7.1:26468882-26468901 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | + | chr7.1:26468396-26468415 | MS.gene023841:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | - | chr7.1:26468881-26468900 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | - | chr7.1:26468305-26468324 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | + | chr7.1:26469065-26469084 | MS.gene023841:intron | 25.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | - | chr7.1:26468300-26468319 | None:intergenic | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | + | chr7.1:26469148-26469167 | MS.gene023841:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | - | chr7.1:26469270-26469289 | None:intergenic | 25.0% |
| AATTTCAGCAAGAACTTTCA+AGG | + | chr7.1:26468911-26468930 | MS.gene023841:CDS | 30.0% | |
| ACTCGATTGAAAATAGTGTT+AGG | + | chr7.1:26469635-26469654 | MS.gene023841:intron | 30.0% | |
| ACTTGTGTATAAAGGATATC+CGG | - | chr7.1:26468524-26468543 | None:intergenic | 30.0% | |
| AGTAATCTCAACCATTCATA+AGG | + | chr7.1:26469571-26469590 | MS.gene023841:intron | 30.0% | |
| CACAAAAACTGTTTATCCTT+TGG | + | chr7.1:26469441-26469460 | MS.gene023841:CDS | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | - | chr7.1:26468883-26468902 | None:intergenic | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | + | chr7.1:26469636-26469655 | MS.gene023841:intron | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | + | chr7.1:26468530-26468549 | MS.gene023841:intron | 30.0% | |
| CTTTGTGAAATAGATGTCAT+TGG | + | chr7.1:26469862-26469881 | MS.gene023841:intron | 30.0% | |
| TCTAAACTTGTGTCTAAGTT+GGG | + | chr7.1:26468794-26468813 | MS.gene023841:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | + | chr7.1:26469867-26469886 | MS.gene023841:intron | 30.0% | |
| ! | AAACTTTGTTGTCCATACTA+TGG | - | chr7.1:26468556-26468575 | None:intergenic | 30.0% |
| ! | AACTGTTTATCCTTTGGAAA+AGG | + | chr7.1:26469447-26469466 | MS.gene023841:CDS | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | + | chr7.1:26469732-26469751 | MS.gene023841:intron | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | - | chr7.1:26469460-26469479 | None:intergenic | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | + | chr7.1:26469734-26469753 | MS.gene023841:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | + | chr7.1:26469733-26469752 | MS.gene023841:intron | 30.0% |
| ! | CCATTTTGAACAACTTTTCA+AGG | + | chr7.1:26468880-26468899 | MS.gene023841:CDS | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | + | chr7.1:26469724-26469743 | MS.gene023841:intron | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | - | chr7.1:26469139-26469158 | None:intergenic | 30.0% |
| ! | TCATTTTCAACAGCTTTTCA+TGG | + | chr7.1:26469988-26470007 | MS.gene023841:CDS | 30.0% |
| ! | TCGATTGATTTCCTTATGAA+TGG | - | chr7.1:26469585-26469604 | None:intergenic | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | + | chr7.1:26469101-26469120 | MS.gene023841:CDS | 30.0% |
| !! | ACTTGCACTTTGTATTGATT+TGG | + | chr7.1:26469027-26469046 | MS.gene023841:intron | 30.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | + | chr7.1:26468270-26468289 | MS.gene023841:CDS | 30.0% |
| !!! | TCAACGCTCTTTATTTTTTG+TGG | + | chr7.1:26469682-26469701 | MS.gene023841:intron | 30.0% |
| AAGTTGGGTTTCATGTATGT+TGG | + | chr7.1:26468809-26468828 | MS.gene023841:intron | 35.0% | |
| ACATTGCGTAATTTATGCAG+GGG | - | chr7.1:26469782-26469801 | None:intergenic | 35.0% | |
| AGGAACTCTTGATAAATGCA+AGG | + | chr7.1:26468224-26468243 | MS.gene023841:CDS | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | + | chr7.1:26470099-26470118 | MS.gene023841:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | - | chr7.1:26468532-26468551 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | + | chr7.1:26468529-26468548 | MS.gene023841:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | - | chr7.1:26469976-26469995 | None:intergenic | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | + | chr7.1:26469868-26469887 | MS.gene023841:intron | 35.0% | |
| GACATTGCGTAATTTATGCA+GGG | - | chr7.1:26469783-26469802 | None:intergenic | 35.0% | |
| GTCTAAACTTGTGTCTAAGT+TGG | + | chr7.1:26468793-26468812 | MS.gene023841:intron | 35.0% | |
| GTGAAATAGATGTCATTGGA+AGG | + | chr7.1:26469866-26469885 | MS.gene023841:intron | 35.0% | |
| TAAAGTTCCACTGAACATAG+AGG | - | chr7.1:26469404-26469423 | None:intergenic | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | - | chr7.1:26469784-26469803 | None:intergenic | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | + | chr7.1:26468315-26468334 | MS.gene023841:CDS | 35.0% | |
| TTAACTTTGCTGCGTTCTTA+AGG | + | chr7.1:26468590-26468609 | MS.gene023841:intron | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | + | chr7.1:26468248-26468267 | MS.gene023841:CDS | 35.0% | |
| TTGTTCTTCCTTTACAGAAC+AGG | + | chr7.1:26469362-26469381 | MS.gene023841:intron | 35.0% | |
| ! | TAAGGTTCGATTTGCACATA+GGG | + | chr7.1:26468608-26468627 | MS.gene023841:intron | 35.0% |
| ! | TTAAGGTTCGATTTGCACAT+AGG | + | chr7.1:26468607-26468626 | MS.gene023841:intron | 35.0% |
| !! | GAACAACTTTTCAAGGAATC+TGG | + | chr7.1:26468887-26468906 | MS.gene023841:CDS | 35.0% |
| !! | GTTATAAAGAGCGTTGATAG+CGG | - | chr7.1:26469822-26469841 | None:intergenic | 35.0% |
| !! | TAAAGAGCGTTGATAGTGAA+TGG | - | chr7.1:26469675-26469694 | None:intergenic | 35.0% |
| AACATAGAGGAGAGTCTACT+GGG | - | chr7.1:26469391-26469410 | None:intergenic | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | + | chr7.1:26468839-26468858 | MS.gene023841:CDS | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | - | chr7.1:26469940-26469959 | None:intergenic | 40.0% | |
| CATAGGAAGAATGTGTAAGG+TGG | - | chr7.1:26469937-26469956 | None:intergenic | 40.0% | |
| CTTAAAATGCACTCACTGCA+AGG | + | chr7.1:26468314-26468333 | MS.gene023841:CDS | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | + | chr7.1:26468835-26468854 | MS.gene023841:intron | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | + | chr7.1:26468326-26468345 | MS.gene023841:CDS | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | + | chr7.1:26469995-26470014 | MS.gene023841:CDS | 40.0% |
| ! | GTTACCACAAGACTTGCTTT+AGG | + | chr7.1:26469894-26469913 | MS.gene023841:CDS | 40.0% |
| ACAGGCAGAAGAAAAGTCTG+AGG | + | chr7.1:26470123-26470142 | MS.gene023841:CDS | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | + | chr7.1:26470105-26470124 | MS.gene023841:CDS | 45.0% | |
| AGACTCTCCTCTATGTTCAG+TGG | + | chr7.1:26469394-26469413 | MS.gene023841:CDS | 45.0% | |
| AGTTTGGTAGGGCCATAGTA+TGG | + | chr7.1:26468541-26468560 | MS.gene023841:intron | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | - | chr7.1:26469716-26469735 | None:intergenic | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | - | chr7.1:26468868-26468887 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | - | chr7.1:26469901-26469920 | None:intergenic | 45.0% | |
| CGTAATTTATGCAGGGGCAA+GGG | - | chr7.1:26469776-26469795 | None:intergenic | 45.0% | |
| GAACATAGAGGAGAGTCTAC+TGG | - | chr7.1:26469392-26469411 | None:intergenic | 45.0% | |
| GTAATTTATGCAGGGGCAAG+GGG | - | chr7.1:26469775-26469794 | None:intergenic | 45.0% | |
| TCTTCCTATGCTGCACTAGA+TGG | + | chr7.1:26469947-26469966 | MS.gene023841:CDS | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | + | chr7.1:26469905-26469924 | MS.gene023841:CDS | 45.0% |
| CAATGTCAGCTAAGCTCACG+GGG | + | chr7.1:26469796-26469815 | MS.gene023841:intron | 50.0% | |
| CGCAATGTCAGCTAAGCTCA+CGG | + | chr7.1:26469794-26469813 | MS.gene023841:intron | 50.0% | |
| CTGGGTGTCCTGTTCTGTAA+AGG | - | chr7.1:26469373-26469392 | None:intergenic | 50.0% | |
| GACACCATCTAGTGCAGCAT+AGG | - | chr7.1:26469954-26469973 | None:intergenic | 50.0% | |
| GCAATGTCAGCTAAGCTCAC+GGG | + | chr7.1:26469795-26469814 | MS.gene023841:intron | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | - | chr7.1:26470109-26470128 | None:intergenic | 50.0% | |
| GCGTAATTTATGCAGGGGCA+AGG | - | chr7.1:26469777-26469796 | None:intergenic | 50.0% | |
| TGAACCAGCTGATGAGGATG+AGG | + | chr7.1:26470075-26470094 | MS.gene023841:CDS | 50.0% | |
| TGCAGCCAAAATCGCAGATG+CGG | + | chr7.1:26469230-26469249 | MS.gene023841:intron | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | + | chr7.1:26469702-26469721 | MS.gene023841:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | + | chr7.1:26469741-26469760 | MS.gene023841:intron | 50.0% |
| ! | CAACACCGCATCTGCGATTT+TGG | - | chr7.1:26469238-26469257 | None:intergenic | 50.0% |
| ! | TCATCCTCATCAGCTGGTTC+AGG | - | chr7.1:26470076-26470095 | None:intergenic | 50.0% |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | + | chr7.1:26469908-26469927 | MS.gene023841:CDS | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | + | chr7.1:26469742-26469761 | MS.gene023841:intron | 50.0% |
| ACCACCTGAACCAGCTGATG+AGG | + | chr7.1:26470069-26470088 | MS.gene023841:CDS | 55.0% | |
| GATGCCTCATCCTCATCAGC+TGG | - | chr7.1:26470082-26470101 | None:intergenic | 55.0% | |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | + | chr7.1:26469743-26469762 | MS.gene023841:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | - | chr7.1:26470070-26470089 | None:intergenic | 55.0% |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | - | chr7.1:26470073-26470092 | None:intergenic | 55.0% |
| !! | TCGCAGATGCGGTGTTGTTG+TGG | + | chr7.1:26469241-26469260 | MS.gene023841:intron | 55.0% |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | - | chr7.1:26470065-26470084 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 26468213 | 26470159 | 26468213 | ID=MS.gene023841 |
| chr7.1 | mRNA | 26468213 | 26470159 | 26468213 | ID=MS.gene023841.t1;Parent=MS.gene023841 |
| chr7.1 | exon | 26468213 | 26468347 | 26468213 | ID=MS.gene023841.t1.exon1;Parent=MS.gene023841.t1 |
| chr7.1 | CDS | 26468213 | 26468347 | 26468213 | ID=cds.MS.gene023841.t1;Parent=MS.gene023841.t1 |
| chr7.1 | exon | 26468836 | 26468932 | 26468836 | ID=MS.gene023841.t1.exon2;Parent=MS.gene023841.t1 |
| chr7.1 | CDS | 26468836 | 26468932 | 26468836 | ID=cds.MS.gene023841.t1;Parent=MS.gene023841.t1 |
| chr7.1 | exon | 26469091 | 26469122 | 26469091 | ID=MS.gene023841.t1.exon3;Parent=MS.gene023841.t1 |
| chr7.1 | CDS | 26469091 | 26469122 | 26469091 | ID=cds.MS.gene023841.t1;Parent=MS.gene023841.t1 |
| chr7.1 | exon | 26469379 | 26469468 | 26469379 | ID=MS.gene023841.t1.exon4;Parent=MS.gene023841.t1 |
| chr7.1 | CDS | 26469379 | 26469468 | 26469379 | ID=cds.MS.gene023841.t1;Parent=MS.gene023841.t1 |
| chr7.1 | exon | 26469875 | 26470159 | 26469875 | ID=MS.gene023841.t1.exon5;Parent=MS.gene023841.t1 |
| chr7.1 | CDS | 26469875 | 26470159 | 26469875 | ID=cds.MS.gene023841.t1;Parent=MS.gene023841.t1 |
| Gene Sequence |
| Protein sequence |
