Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023843.t1 | RHN46899.1 | 95.9 | 217 | 9 | 0 | 10 | 226 | 53 | 269 | 3.20E-112 | 414.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023843.t1 | Q9M2D9 | 49.3 | 219 | 85 | 9 | 10 | 224 | 87 | 283 | 2.0e-38 | 160.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023843.t1 | G7L3J2 | 95.9 | 217 | 9 | 0 | 10 | 226 | 88 | 304 | 2.3e-112 | 414.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene023843.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023843.t1 | MTR_7g076740 | 96.296 | 216 | 8 | 0 | 11 | 226 | 89 | 304 | 2.55e-152 | 425 |
| MS.gene023843.t1 | MTR_8g031360 | 61.611 | 211 | 74 | 5 | 11 | 218 | 90 | 296 | 1.32e-76 | 233 |
| MS.gene023843.t1 | MTR_1g100653 | 41.892 | 222 | 92 | 10 | 11 | 221 | 88 | 283 | 8.15e-37 | 130 |
| MS.gene023843.t1 | MTR_7g011170 | 62.500 | 80 | 29 | 1 | 11 | 90 | 88 | 166 | 7.07e-26 | 102 |
| MS.gene023843.t1 | MTR_6g012690 | 63.415 | 82 | 28 | 1 | 11 | 90 | 88 | 169 | 1.44e-25 | 102 |
| MS.gene023843.t1 | MTR_4g082290 | 60.000 | 85 | 32 | 1 | 11 | 93 | 88 | 172 | 4.15e-25 | 102 |
| MS.gene023843.t1 | MTR_4g082230 | 59.302 | 86 | 33 | 1 | 10 | 93 | 87 | 172 | 4.41e-25 | 102 |
| MS.gene023843.t1 | MTR_5g042030 | 50.000 | 76 | 33 | 1 | 10 | 85 | 82 | 152 | 2.83e-18 | 81.6 |
| MS.gene023843.t1 | MTR_5g007370 | 76.190 | 42 | 10 | 0 | 10 | 51 | 87 | 128 | 4.46e-17 | 78.6 |
| MS.gene023843.t1 | MTR_3g074520 | 70.213 | 47 | 14 | 0 | 11 | 57 | 88 | 134 | 4.96e-17 | 79.0 |
| MS.gene023843.t1 | MTR_2g011660 | 73.810 | 42 | 11 | 0 | 10 | 51 | 88 | 129 | 1.62e-16 | 77.4 |
| MS.gene023843.t1 | MTR_5g078140 | 70.455 | 44 | 13 | 0 | 10 | 53 | 87 | 130 | 2.91e-16 | 76.6 |
| MS.gene023843.t1 | MTR_4g478180 | 73.810 | 42 | 11 | 0 | 10 | 51 | 88 | 129 | 2.99e-16 | 76.6 |
| MS.gene023843.t1 | MTR_1g112760 | 69.565 | 46 | 14 | 0 | 7 | 52 | 85 | 130 | 3.68e-16 | 75.1 |
| MS.gene023843.t1 | MTR_8g095390 | 66.667 | 45 | 15 | 0 | 11 | 55 | 88 | 132 | 3.83e-16 | 76.3 |
| MS.gene023843.t1 | MTR_4g091490 | 73.171 | 41 | 11 | 0 | 11 | 51 | 89 | 129 | 4.22e-16 | 76.3 |
| MS.gene023843.t1 | MTR_4g105130 | 45.349 | 86 | 45 | 1 | 11 | 96 | 88 | 171 | 7.27e-16 | 75.9 |
| MS.gene023843.t1 | MTR_6g009430 | 56.863 | 51 | 22 | 0 | 7 | 57 | 84 | 134 | 1.83e-15 | 74.3 |
| MS.gene023843.t1 | MTR_4g102380 | 69.767 | 43 | 13 | 0 | 10 | 52 | 87 | 129 | 2.77e-15 | 73.2 |
| MS.gene023843.t1 | MTR_2g089620 | 71.429 | 42 | 12 | 0 | 10 | 51 | 87 | 128 | 2.81e-15 | 73.9 |
| MS.gene023843.t1 | MTR_3g077110 | 68.889 | 45 | 14 | 0 | 7 | 51 | 84 | 128 | 3.14e-15 | 73.9 |
| MS.gene023843.t1 | MTR_3g045430 | 61.224 | 49 | 19 | 0 | 7 | 55 | 85 | 133 | 7.09e-15 | 72.4 |
| MS.gene023843.t1 | MTR_1g085040 | 64.444 | 45 | 16 | 0 | 11 | 55 | 88 | 132 | 8.80e-15 | 72.8 |
| MS.gene023843.t1 | MTR_1g085640 | 64.444 | 45 | 16 | 0 | 11 | 55 | 88 | 132 | 1.05e-14 | 72.4 |
| MS.gene023843.t1 | MTR_4g073420 | 43.243 | 74 | 37 | 1 | 11 | 84 | 88 | 156 | 1.22e-14 | 71.6 |
| MS.gene023843.t1 | MTR_3g083540 | 62.791 | 43 | 16 | 0 | 10 | 52 | 116 | 158 | 2.42e-14 | 70.9 |
| MS.gene023843.t1 | MTR_3g097450 | 65.854 | 41 | 14 | 0 | 10 | 50 | 87 | 127 | 2.72e-14 | 70.9 |
| MS.gene023843.t1 | MTR_3g065440 | 70.732 | 41 | 12 | 0 | 10 | 50 | 87 | 127 | 2.78e-14 | 70.9 |
| MS.gene023843.t1 | MTR_5g029840 | 64.286 | 42 | 15 | 0 | 10 | 51 | 87 | 128 | 2.86e-14 | 70.9 |
| MS.gene023843.t1 | MTR_7g110830 | 62.222 | 45 | 17 | 0 | 11 | 55 | 88 | 132 | 3.53e-14 | 70.9 |
| MS.gene023843.t1 | MTR_3g461490 | 59.574 | 47 | 19 | 0 | 11 | 57 | 88 | 134 | 4.76e-14 | 70.5 |
| MS.gene023843.t1 | MTR_5g079670 | 56.098 | 41 | 18 | 0 | 10 | 50 | 86 | 126 | 9.37e-13 | 65.5 |
| MS.gene023843.t1 | MTR_2g064160 | 59.184 | 49 | 18 | 1 | 11 | 59 | 87 | 133 | 1.46e-12 | 65.9 |
| MS.gene023843.t1 | MTR_4g485530 | 60.000 | 40 | 16 | 0 | 10 | 49 | 87 | 126 | 4.00e-12 | 63.2 |
| MS.gene023843.t1 | MTR_5g007310 | 64.103 | 39 | 14 | 0 | 21 | 59 | 6 | 44 | 1.89e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023843.t1 | AT3G61250 | 50.235 | 213 | 78 | 11 | 11 | 218 | 88 | 277 | 5.06e-52 | 170 |
| MS.gene023843.t1 | AT3G01140 | 56.989 | 93 | 35 | 1 | 11 | 98 | 88 | 180 | 1.26e-26 | 105 |
| MS.gene023843.t1 | AT3G01140 | 56.989 | 93 | 35 | 1 | 11 | 98 | 131 | 223 | 1.90e-26 | 105 |
| MS.gene023843.t1 | AT5G15310 | 63.415 | 82 | 26 | 2 | 11 | 90 | 9 | 88 | 1.84e-25 | 100 |
| MS.gene023843.t1 | AT5G15310 | 63.415 | 82 | 26 | 2 | 11 | 90 | 88 | 167 | 1.17e-24 | 98.2 |
| MS.gene023843.t1 | AT5G15310 | 63.415 | 82 | 26 | 2 | 11 | 90 | 88 | 167 | 1.58e-24 | 99.4 |
| MS.gene023843.t1 | AT5G15310 | 63.415 | 82 | 26 | 2 | 11 | 90 | 88 | 167 | 1.67e-24 | 99.0 |
| MS.gene023843.t1 | AT5G10280 | 43.750 | 112 | 37 | 4 | 11 | 100 | 88 | 195 | 6.49e-17 | 78.6 |
| MS.gene023843.t1 | AT5G61420 | 72.727 | 44 | 12 | 0 | 11 | 54 | 9 | 52 | 1.68e-16 | 77.0 |
| MS.gene023843.t1 | AT4G21440 | 67.391 | 46 | 15 | 0 | 10 | 55 | 87 | 132 | 3.02e-16 | 76.6 |
| MS.gene023843.t1 | AT4G05100 | 71.429 | 42 | 12 | 0 | 10 | 51 | 88 | 129 | 4.46e-16 | 76.3 |
| MS.gene023843.t1 | AT1G34670 | 38.971 | 136 | 66 | 5 | 11 | 131 | 88 | 221 | 5.27e-16 | 76.3 |
| MS.gene023843.t1 | AT5G65230 | 75.610 | 41 | 10 | 0 | 11 | 51 | 88 | 128 | 5.99e-16 | 75.5 |
| MS.gene023843.t1 | AT5G61420 | 72.727 | 44 | 12 | 0 | 11 | 54 | 88 | 131 | 7.52e-16 | 75.9 |
| MS.gene023843.t1 | AT1G22640 | 44.286 | 70 | 39 | 0 | 3 | 72 | 8 | 77 | 8.20e-16 | 73.2 |
| MS.gene023843.t1 | AT4G28110 | 70.732 | 41 | 12 | 0 | 11 | 51 | 4 | 44 | 1.67e-15 | 72.4 |
| MS.gene023843.t1 | AT1G66230 | 65.909 | 44 | 15 | 0 | 10 | 53 | 87 | 130 | 1.74e-15 | 73.9 |
| MS.gene023843.t1 | AT4G22680 | 69.767 | 43 | 13 | 0 | 10 | 52 | 87 | 129 | 1.88e-15 | 73.6 |
| MS.gene023843.t1 | AT5G16600 | 65.909 | 44 | 15 | 0 | 10 | 53 | 87 | 130 | 2.21e-15 | 74.3 |
| MS.gene023843.t1 | AT4G17785 | 70.732 | 41 | 12 | 0 | 11 | 51 | 89 | 129 | 2.34e-15 | 74.3 |
| MS.gene023843.t1 | AT1G22640 | 50.000 | 62 | 31 | 0 | 11 | 72 | 31 | 92 | 2.35e-15 | 72.4 |
| MS.gene023843.t1 | AT4G17785 | 70.732 | 41 | 12 | 0 | 11 | 51 | 89 | 129 | 2.53e-15 | 74.3 |
| MS.gene023843.t1 | AT1G18570 | 63.462 | 52 | 19 | 0 | 10 | 61 | 88 | 139 | 3.06e-15 | 73.9 |
| MS.gene023843.t1 | AT5G16770 | 69.048 | 42 | 13 | 0 | 10 | 51 | 87 | 128 | 3.66e-15 | 73.6 |
| MS.gene023843.t1 | AT5G16770 | 69.048 | 42 | 13 | 0 | 10 | 51 | 87 | 128 | 3.66e-15 | 73.6 |
| MS.gene023843.t1 | AT5G07700 | 68.000 | 50 | 14 | 1 | 11 | 60 | 88 | 135 | 4.28e-15 | 73.6 |
| MS.gene023843.t1 | AT5G07700 | 68.000 | 50 | 14 | 1 | 11 | 60 | 88 | 135 | 4.28e-15 | 73.6 |
| MS.gene023843.t1 | AT5G54230 | 67.391 | 46 | 15 | 0 | 10 | 55 | 87 | 132 | 4.47e-15 | 73.2 |
| MS.gene023843.t1 | AT5G16770 | 69.048 | 42 | 13 | 0 | 10 | 51 | 87 | 128 | 4.90e-15 | 73.2 |
| MS.gene023843.t1 | AT5G16770 | 69.048 | 42 | 13 | 0 | 10 | 51 | 87 | 128 | 4.90e-15 | 73.2 |
| MS.gene023843.t1 | AT1G09540 | 60.417 | 48 | 19 | 0 | 11 | 58 | 88 | 135 | 5.24e-15 | 73.6 |
| MS.gene023843.t1 | AT3G02940 | 68.293 | 41 | 13 | 0 | 11 | 51 | 88 | 128 | 7.09e-15 | 72.4 |
| MS.gene023843.t1 | AT5G60890 | 72.727 | 44 | 12 | 0 | 11 | 54 | 88 | 131 | 7.15e-15 | 72.4 |
| MS.gene023843.t1 | AT3G13540 | 64.286 | 42 | 15 | 0 | 11 | 52 | 99 | 140 | 7.67e-15 | 71.6 |
| MS.gene023843.t1 | AT4G34990 | 65.116 | 43 | 15 | 0 | 10 | 52 | 87 | 129 | 8.54e-15 | 72.0 |
| MS.gene023843.t1 | AT3G02940 | 68.293 | 41 | 13 | 0 | 11 | 51 | 88 | 128 | 8.68e-15 | 72.4 |
| MS.gene023843.t1 | AT3G02940 | 68.293 | 41 | 13 | 0 | 11 | 51 | 88 | 128 | 8.68e-15 | 72.4 |
| MS.gene023843.t1 | AT1G22640 | 50.000 | 62 | 31 | 0 | 11 | 72 | 88 | 149 | 8.84e-15 | 71.6 |
| MS.gene023843.t1 | AT4G09460 | 66.667 | 42 | 14 | 0 | 11 | 52 | 88 | 129 | 1.01e-14 | 71.2 |
| MS.gene023843.t1 | AT4G28110 | 73.171 | 41 | 11 | 0 | 11 | 51 | 88 | 128 | 1.09e-14 | 71.6 |
| MS.gene023843.t1 | AT5G26660 | 60.417 | 48 | 19 | 0 | 7 | 54 | 53 | 100 | 1.13e-14 | 72.0 |
| MS.gene023843.t1 | AT1G35515 | 66.667 | 42 | 14 | 0 | 11 | 52 | 88 | 129 | 1.34e-14 | 70.5 |
| MS.gene023843.t1 | AT5G56110 | 58.333 | 48 | 20 | 0 | 10 | 57 | 87 | 134 | 1.34e-14 | 72.0 |
| MS.gene023843.t1 | AT5G26660 | 60.417 | 48 | 19 | 0 | 7 | 54 | 84 | 131 | 1.90e-14 | 71.6 |
| MS.gene023843.t1 | AT1G74430 | 64.444 | 45 | 16 | 0 | 10 | 54 | 18 | 62 | 2.38e-14 | 69.7 |
| MS.gene023843.t1 | AT2G16720 | 65.116 | 43 | 15 | 0 | 10 | 52 | 87 | 129 | 3.27e-14 | 70.1 |
| MS.gene023843.t1 | AT5G07690 | 58.929 | 56 | 22 | 1 | 11 | 66 | 88 | 142 | 3.27e-14 | 70.9 |
| MS.gene023843.t1 | AT4G38620 | 61.905 | 42 | 16 | 0 | 11 | 52 | 88 | 129 | 3.76e-14 | 70.1 |
| MS.gene023843.t1 | AT4G12350 | 62.791 | 43 | 16 | 0 | 10 | 52 | 87 | 129 | 1.19e-13 | 68.9 |
| MS.gene023843.t1 | AT5G14340 | 58.696 | 46 | 19 | 0 | 11 | 56 | 10 | 55 | 1.30e-13 | 67.0 |
| MS.gene023843.t1 | AT1G74430 | 65.909 | 44 | 15 | 0 | 11 | 54 | 88 | 131 | 2.60e-13 | 67.8 |
| MS.gene023843.t1 | AT4G01680 | 52.830 | 53 | 25 | 0 | 11 | 63 | 88 | 140 | 4.32e-13 | 66.6 |
| MS.gene023843.t1 | AT5G62320 | 62.500 | 40 | 15 | 0 | 10 | 49 | 95 | 134 | 4.76e-13 | 66.6 |
| MS.gene023843.t1 | AT5G14340 | 57.447 | 47 | 20 | 0 | 10 | 56 | 99 | 145 | 8.30e-13 | 66.2 |
| MS.gene023843.t1 | AT4G01680 | 52.830 | 53 | 25 | 0 | 11 | 63 | 88 | 140 | 1.05e-12 | 66.6 |
| MS.gene023843.t1 | AT4G01680 | 52.830 | 53 | 25 | 0 | 11 | 63 | 100 | 152 | 1.07e-12 | 66.6 |
| MS.gene023843.t1 | AT1G57560 | 54.000 | 50 | 23 | 0 | 11 | 60 | 88 | 137 | 1.12e-12 | 66.2 |
| MS.gene023843.t1 | AT1G57560 | 60.465 | 43 | 17 | 0 | 11 | 53 | 88 | 130 | 1.57e-12 | 65.5 |
| MS.gene023843.t1 | AT3G12720 | 69.231 | 39 | 12 | 0 | 11 | 49 | 98 | 136 | 3.88e-12 | 64.7 |
| MS.gene023843.t1 | AT3G28470 | 39.130 | 115 | 51 | 3 | 7 | 109 | 84 | 191 | 4.27e-12 | 64.7 |
| MS.gene023843.t1 | AT1G18710 | 61.905 | 42 | 16 | 0 | 11 | 52 | 88 | 129 | 1.51e-11 | 62.8 |
| MS.gene023843.t1 | AT1G74080 | 67.500 | 40 | 13 | 0 | 11 | 50 | 88 | 127 | 2.75e-11 | 62.4 |
| MS.gene023843.t1 | AT1G18960 | 50.000 | 50 | 25 | 0 | 6 | 55 | 76 | 125 | 4.15e-11 | 62.0 |
Find 34 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATTACTTTCTCCGTATA+TGG | 0.178709 | 7.1:+26462432 | MS.gene023843:CDS |
| GATGCGTGTGACTTGTTATT+TGG | 0.197120 | 7.1:-26462287 | None:intergenic |
| TATCTCATTGTCTGTTCTTC+CGG | 0.226667 | 7.1:-26462171 | None:intergenic |
| AGTAGTGACAAATGCCTAAA+AGG | 0.245360 | 7.1:-26462786 | None:intergenic |
| GATAATGATCCTGCAGAAAT+TGG | 0.270588 | 7.1:-26462539 | None:intergenic |
| ATCTCATTGTCTGTTCTTCC+GGG | 0.293138 | 7.1:-26462170 | None:intergenic |
| ACAATGAGATAAAGAACTTT+TGG | 0.296577 | 7.1:+26462183 | MS.gene023843:CDS |
| ATGTTAGTATGATCTGTATC+TGG | 0.314171 | 7.1:-26462494 | None:intergenic |
| AACAATGACATGAGCTTCTT+AGG | 0.316806 | 7.1:+26462746 | MS.gene023843:CDS |
| CAACTTCAGAGTTCCATATA+CGG | 0.425073 | 7.1:-26462445 | None:intergenic |
| AAGCTCATGTCATTGTTCAT+AGG | 0.447397 | 7.1:-26462740 | None:intergenic |
| ATGCGTGTGACTTGTTATTT+GGG | 0.448476 | 7.1:-26462286 | None:intergenic |
| AACACGTCACATGGCTCAAT+GGG | 0.449186 | 7.1:+26462316 | MS.gene023843:CDS |
| AGAAATGGAGTCACATTTGT+TGG | 0.449246 | 7.1:-26462564 | None:intergenic |
| CGTATATGGAACTCTGAAGT+TGG | 0.454090 | 7.1:+26462446 | MS.gene023843:CDS |
| GCTCGCTGTAACAGCAGAAA+TGG | 0.457228 | 7.1:-26462579 | None:intergenic |
| TGATGAATCTTGCAAGTCAT+TGG | 0.458871 | 7.1:-26462687 | None:intergenic |
| GAAGAAACGTCTCAAAAGCC+TGG | 0.462496 | 7.1:+26462217 | MS.gene023843:CDS |
| TGTCGCTGCAACTGCGGTCG+AGG | 0.476272 | 7.1:-26461942 | None:intergenic |
| CAACACGTCACATGGCTCAA+TGG | 0.478902 | 7.1:+26462315 | MS.gene023843:CDS |
| GTAGTGACAAATGCCTAAAA+GGG | 0.479751 | 7.1:-26462785 | None:intergenic |
| TTGTGAAAGAAGAGTTGGAT+TGG | 0.480337 | 7.1:+26462609 | MS.gene023843:CDS |
| TAGTATTGTGAAAGAAGAGT+TGG | 0.500514 | 7.1:+26462604 | MS.gene023843:CDS |
| TGTCAGAGTCCAATTTCTGC+AGG | 0.508361 | 7.1:+26462530 | MS.gene023843:CDS |
| ATTTGGGTAACTAGTTAATG+AGG | 0.514248 | 7.1:-26462270 | None:intergenic |
| TGGCTCAATGGGAGAGTGCA+AGG | 0.542923 | 7.1:+26462327 | MS.gene023843:CDS |
| CTTTGATGTCGCTGCAACTG+CGG | 0.544610 | 7.1:-26461948 | None:intergenic |
| AAGAAACGTCTCAAAAGCCT+GGG | 0.574138 | 7.1:+26462218 | MS.gene023843:CDS |
| ATCGGTTTCAACACGTCACA+TGG | 0.583488 | 7.1:+26462307 | MS.gene023843:CDS |
| TAACTAGTTAATGAGGCTAC+CGG | 0.584460 | 7.1:-26462263 | None:intergenic |
| AAATAACAAGTCACACGCAT+CGG | 0.590420 | 7.1:+26462289 | MS.gene023843:CDS |
| GCAATTGCATCTCAGTTACC+CGG | 0.621059 | 7.1:+26462152 | MS.gene023843:CDS |
| AGTTGGAGATGCATTTCGCA+AGG | 0.630719 | 7.1:+26462463 | MS.gene023843:CDS |
| TATACGGAGAAAGTAATCAG+AGG | 0.679714 | 7.1:-26462429 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATTTAACAATATTTC+AGG | + | chr7.1:26462123-26462142 | MS.gene023843:intron | 15.0% |
| !! | AAATTTAACAATATTTCAGG+TGG | + | chr7.1:26462126-26462145 | MS.gene023843:intron | 20.0% |
| !! | ATAAAAGTTTGAACTGATTA+AGG | - | chr7.1:26462066-26462085 | None:intergenic | 20.0% |
| !! | GATCATTAAATCTAGATAAT+TGG | + | chr7.1:26462026-26462045 | MS.gene023843:intron | 20.0% |
| !! | TTATCTAGATTTAATGATCA+TGG | - | chr7.1:26462025-26462044 | None:intergenic | 20.0% |
| !!! | AATTTAACAATATTTCAGGT+GGG | + | chr7.1:26462127-26462146 | MS.gene023843:intron | 20.0% |
| !! | ACAATGAGATAAAGAACTTT+TGG | + | chr7.1:26462183-26462202 | MS.gene023843:CDS | 25.0% |
| !! | TCAATTTTTGTGAAGGAATT+AGG | - | chr7.1:26462404-26462423 | None:intergenic | 25.0% |
| !! | TTAATGATCATGGATTTTTG+AGG | - | chr7.1:26462015-26462034 | None:intergenic | 25.0% |
| ATGTTAGTATGATCTGTATC+TGG | - | chr7.1:26462497-26462516 | None:intergenic | 30.0% | |
| ATTTGGGTAACTAGTTAATG+AGG | - | chr7.1:26462273-26462292 | None:intergenic | 30.0% | |
| TAGTATTGTGAAAGAAGAGT+TGG | + | chr7.1:26462604-26462623 | MS.gene023843:CDS | 30.0% | |
| ! | GGAAGAATCAATTTTTGTGA+AGG | - | chr7.1:26462411-26462430 | None:intergenic | 30.0% |
| AAAAAGTCCAAATGCCATCT+TGG | - | chr7.1:26461989-26462008 | None:intergenic | 35.0% | |
| AAATAACAAGTCACACGCAT+CGG | + | chr7.1:26462289-26462308 | MS.gene023843:CDS | 35.0% | |
| AACAATGACATGAGCTTCTT+AGG | + | chr7.1:26462746-26462765 | MS.gene023843:CDS | 35.0% | |
| AAGCTCATGTCATTGTTCAT+AGG | - | chr7.1:26462743-26462762 | None:intergenic | 35.0% | |
| AGAAATGGAGTCACATTTGT+TGG | - | chr7.1:26462567-26462586 | None:intergenic | 35.0% | |
| CAACTTCAGAGTTCCATATA+CGG | - | chr7.1:26462448-26462467 | None:intergenic | 35.0% | |
| CTGATTACTTTCTCCGTATA+TGG | + | chr7.1:26462432-26462451 | MS.gene023843:CDS | 35.0% | |
| GATAATGATCCTGCAGAAAT+TGG | - | chr7.1:26462542-26462561 | None:intergenic | 35.0% | |
| TAACTAGTTAATGAGGCTAC+CGG | - | chr7.1:26462266-26462285 | None:intergenic | 35.0% | |
| TATACGGAGAAAGTAATCAG+AGG | - | chr7.1:26462432-26462451 | None:intergenic | 35.0% | |
| TATCTCATTGTCTGTTCTTC+CGG | - | chr7.1:26462174-26462193 | None:intergenic | 35.0% | |
| TGATGAATCTTGCAAGTCAT+TGG | - | chr7.1:26462690-26462709 | None:intergenic | 35.0% | |
| TTGTGAAAGAAGAGTTGGAT+TGG | + | chr7.1:26462609-26462628 | MS.gene023843:CDS | 35.0% | |
| !! | ATGCGTGTGACTTGTTATTT+GGG | - | chr7.1:26462289-26462308 | None:intergenic | 35.0% |
| AAGAAACGTCTCAAAAGCCT+GGG | + | chr7.1:26462218-26462237 | MS.gene023843:CDS | 40.0% | |
| ATCTCATTGTCTGTTCTTCC+GGG | - | chr7.1:26462173-26462192 | None:intergenic | 40.0% | |
| ATTTGATGTCGTGACCAAGA+TGG | + | chr7.1:26461972-26461991 | MS.gene023843:intron | 40.0% | |
| TGATCCAAAAACACATGAGC+CGG | + | chr7.1:26462244-26462263 | MS.gene023843:CDS | 40.0% | |
| !! | CGTATATGGAACTCTGAAGT+TGG | + | chr7.1:26462446-26462465 | MS.gene023843:CDS | 40.0% |
| !! | GATGCGTGTGACTTGTTATT+TGG | - | chr7.1:26462290-26462309 | None:intergenic | 40.0% |
| !!! | GTGTTTTTGGATCAATTCCC+AGG | - | chr7.1:26462238-26462257 | None:intergenic | 40.0% |
| AACACGTCACATGGCTCAAT+GGG | + | chr7.1:26462316-26462335 | MS.gene023843:CDS | 45.0% | |
| AGTTGGAGATGCATTTCGCA+AGG | + | chr7.1:26462463-26462482 | MS.gene023843:CDS | 45.0% | |
| GAAGAAACGTCTCAAAAGCC+TGG | + | chr7.1:26462217-26462236 | MS.gene023843:CDS | 45.0% | |
| GCAATTGCATCTCAGTTACC+CGG | + | chr7.1:26462152-26462171 | MS.gene023843:CDS | 45.0% | |
| TGTCAGAGTCCAATTTCTGC+AGG | + | chr7.1:26462530-26462549 | MS.gene023843:CDS | 45.0% | |
| ! | ATCGGTTTCAACACGTCACA+TGG | + | chr7.1:26462307-26462326 | MS.gene023843:CDS | 45.0% |
| CAACACGTCACATGGCTCAA+TGG | + | chr7.1:26462315-26462334 | MS.gene023843:CDS | 50.0% | |
| CTTTGATGTCGCTGCAACTG+CGG | - | chr7.1:26461951-26461970 | None:intergenic | 50.0% | |
| GCTCGCTGTAACAGCAGAAA+TGG | - | chr7.1:26462582-26462601 | None:intergenic | 50.0% | |
| GTCGTGACCAAGATGGCATT+TGG | + | chr7.1:26461979-26461998 | MS.gene023843:intron | 50.0% | |
| !!! | GCTACCGGCTCATGTGTTTT+TGG | - | chr7.1:26462251-26462270 | None:intergenic | 50.0% |
| ! | TGGCTCAATGGGAGAGTGCA+AGG | + | chr7.1:26462327-26462346 | MS.gene023843:CDS | 55.0% |
| TGTCGCTGCAACTGCGGTCG+AGG | - | chr7.1:26461945-26461964 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 26461938 | 26462793 | 26461938 | ID=MS.gene023843 |
| chr7.1 | mRNA | 26461938 | 26462793 | 26461938 | ID=MS.gene023843.t1;Parent=MS.gene023843 |
| chr7.1 | exon | 26461938 | 26461969 | 26461938 | ID=MS.gene023843.t1.exon1;Parent=MS.gene023843.t1 |
| chr7.1 | CDS | 26461938 | 26461969 | 26461938 | ID=cds.MS.gene023843.t1;Parent=MS.gene023843.t1 |
| chr7.1 | exon | 26462145 | 26462793 | 26462145 | ID=MS.gene023843.t1.exon2;Parent=MS.gene023843.t1 |
| chr7.1 | CDS | 26462145 | 26462793 | 26462145 | ID=cds.MS.gene023843.t1;Parent=MS.gene023843.t1 |
| Gene Sequence |
| Protein sequence |
