Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02408.t1 | XP_003612086.1 | 77.6 | 331 | 54 | 5 | 1 | 319 | 1 | 323 | 1.00E-111 | 413.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02408.t1 | Q9XGX0 | 45.3 | 274 | 103 | 9 | 69 | 319 | 82 | 331 | 9.9e-47 | 188.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02408.t1 | G7KGA2 | 77.6 | 331 | 54 | 5 | 1 | 319 | 1 | 323 | 7.4e-112 | 413.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene02408.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02408.t1 | MTR_5g021130 | 87.349 | 332 | 20 | 8 | 1 | 319 | 1 | 323 | 0.0 | 520 |
| MS.gene02408.t1 | MTR_8g076620 | 53.757 | 346 | 118 | 12 | 1 | 319 | 1 | 331 | 1.71e-94 | 283 |
| MS.gene02408.t1 | MTR_3g112510 | 42.138 | 318 | 150 | 11 | 1 | 314 | 1 | 288 | 2.95e-61 | 197 |
| MS.gene02408.t1 | MTR_5g089750 | 50.314 | 159 | 55 | 4 | 106 | 246 | 249 | 401 | 3.38e-39 | 144 |
| MS.gene02408.t1 | MTR_4g071110 | 44.156 | 154 | 66 | 1 | 95 | 248 | 6 | 139 | 1.65e-38 | 137 |
| MS.gene02408.t1 | MTR_3g014660 | 43.750 | 160 | 74 | 3 | 106 | 251 | 134 | 291 | 4.04e-38 | 138 |
| MS.gene02408.t1 | MTR_8g039110 | 42.857 | 168 | 76 | 3 | 106 | 254 | 124 | 290 | 4.49e-34 | 127 |
| MS.gene02408.t1 | MTR_1g023230 | 55.556 | 117 | 33 | 4 | 104 | 208 | 120 | 229 | 9.89e-28 | 108 |
| MS.gene02408.t1 | MTR_0363s0040 | 77.778 | 45 | 10 | 0 | 106 | 150 | 124 | 168 | 7.38e-21 | 90.1 |
| MS.gene02408.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 108 | 140 | 44 | 76 | 1.18e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02408.t1 | AT3G51060 | 43.669 | 387 | 133 | 13 | 1 | 319 | 1 | 370 | 1.80e-76 | 239 |
| MS.gene02408.t1 | AT5G66350 | 48.045 | 358 | 120 | 16 | 1 | 319 | 1 | 331 | 3.21e-75 | 234 |
| MS.gene02408.t1 | AT5G66350 | 48.116 | 345 | 115 | 15 | 1 | 306 | 1 | 320 | 8.91e-73 | 228 |
| MS.gene02408.t1 | AT5G66350 | 48.116 | 345 | 115 | 15 | 1 | 306 | 1 | 320 | 1.43e-72 | 228 |
| MS.gene02408.t1 | AT1G19790 | 40.437 | 366 | 148 | 14 | 1 | 318 | 1 | 344 | 3.34e-66 | 211 |
| MS.gene02408.t1 | AT1G19790 | 40.437 | 366 | 148 | 14 | 1 | 318 | 1 | 344 | 3.34e-66 | 211 |
| MS.gene02408.t1 | AT1G75520 | 51.667 | 240 | 80 | 9 | 102 | 319 | 121 | 346 | 4.95e-65 | 208 |
| MS.gene02408.t1 | AT4G36260 | 38.757 | 338 | 167 | 14 | 1 | 317 | 1 | 319 | 1.64e-48 | 165 |
| MS.gene02408.t1 | AT2G18120 | 41.961 | 255 | 87 | 10 | 1 | 248 | 6 | 206 | 3.08e-46 | 156 |
| MS.gene02408.t1 | AT2G18120 | 41.339 | 254 | 88 | 10 | 1 | 248 | 6 | 204 | 2.34e-44 | 151 |
| MS.gene02408.t1 | AT2G21400 | 52.055 | 146 | 55 | 3 | 103 | 246 | 6 | 138 | 3.74e-44 | 150 |
| MS.gene02408.t1 | AT2G21400 | 52.055 | 146 | 55 | 3 | 103 | 246 | 7 | 139 | 4.02e-44 | 149 |
| MS.gene02408.t1 | AT2G21400 | 50.676 | 148 | 39 | 3 | 103 | 246 | 6 | 123 | 2.73e-43 | 147 |
| MS.gene02408.t1 | AT2G21400 | 50.676 | 148 | 39 | 3 | 103 | 246 | 7 | 124 | 2.84e-43 | 147 |
| MS.gene02408.t1 | AT5G12330 | 45.570 | 158 | 69 | 2 | 106 | 246 | 112 | 269 | 5.66e-37 | 135 |
| MS.gene02408.t1 | AT5G12330 | 45.570 | 158 | 69 | 2 | 106 | 246 | 112 | 269 | 5.66e-37 | 135 |
| MS.gene02408.t1 | AT5G12330 | 45.570 | 158 | 69 | 2 | 106 | 246 | 199 | 356 | 1.10e-36 | 136 |
| MS.gene02408.t1 | AT5G33210 | 60.920 | 87 | 26 | 1 | 104 | 182 | 15 | 101 | 7.21e-29 | 107 |
| MS.gene02408.t1 | AT5G33210 | 60.920 | 87 | 26 | 1 | 104 | 182 | 50 | 136 | 2.29e-28 | 108 |
| MS.gene02408.t1 | AT3G54430 | 39.597 | 149 | 77 | 4 | 102 | 249 | 37 | 173 | 2.50e-27 | 105 |
| MS.gene02408.t1 | AT5G12330 | 86.957 | 46 | 6 | 0 | 106 | 151 | 112 | 157 | 6.63e-23 | 95.1 |
Find 76 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGAAGAGATAAGGTTTA+AGG | 0.199519 | 5.3:-12235114 | None:intergenic |
| CCATGTTGTTGAGATGATTT+AGG | 0.214641 | 5.3:-12234171 | None:intergenic |
| TACTCCTCTGGTGTTGTGTT+AGG | 0.305453 | 5.3:+12233907 | MS.gene02408:CDS |
| ATAATCCAACAACAGAATTC+TGG | 0.358326 | 5.3:+12233755 | MS.gene02408:CDS |
| TCCCTGATGCTACTGCTGTT+GGG | 0.375712 | 5.3:+12235135 | MS.gene02408:CDS |
| TGGGAATAATAGTTACAATA+TGG | 0.377378 | 5.3:+12235037 | MS.gene02408:CDS |
| AGAGTGAGTGAAGGGTTTGT+AGG | 0.387801 | 5.3:-12234243 | None:intergenic |
| TTATACCAGAATTCTGTTGT+TGG | 0.398181 | 5.3:-12233760 | None:intergenic |
| TTGGATTATTATTATTCTGT+TGG | 0.399176 | 5.3:-12233741 | None:intergenic |
| TAACTATTATTCCCATGATC+TGG | 0.405584 | 5.3:-12235029 | None:intergenic |
| TGAATTCTCCAGCAGAGTTC+AGG | 0.409422 | 5.3:+12234901 | MS.gene02408:CDS |
| TATGATTATGGTCCAGATCA+TGG | 0.413474 | 5.3:+12235017 | MS.gene02408:CDS |
| TGAATGATGAATCAAGATCT+TGG | 0.413551 | 5.3:-12235239 | None:intergenic |
| CTTTCTCTTCTTCTAGCAGC+AGG | 0.421698 | 5.3:-12234126 | None:intergenic |
| GTCCCTGATGCTACTGCTGT+TGG | 0.422352 | 5.3:+12235134 | MS.gene02408:CDS |
| AAACTCATGTTAAGAGTACT+TGG | 0.425175 | 5.3:+12234100 | MS.gene02408:CDS |
| ACAGAAGAGATAAGGTTTAA+GGG | 0.430955 | 5.3:-12235113 | None:intergenic |
| GTGGGAAGTGGAAGTGGAAG+TGG | 0.430984 | 5.3:+12233982 | MS.gene02408:CDS |
| TCCCCAACAGCAGTAGCATC+AGG | 0.439192 | 5.3:-12235137 | None:intergenic |
| AATAGTTACAATATGGCTAC+TGG | 0.443444 | 5.3:+12235044 | MS.gene02408:CDS |
| TGTTAGGAGTGGGACCTACT+AGG | 0.445348 | 5.3:+12233923 | MS.gene02408:CDS |
| GAGTGTACCACTAGAATTAG+AGG | 0.455284 | 5.3:-12235072 | None:intergenic |
| GCTGGAGAATTCACCACAGC+TGG | 0.457156 | 5.3:-12234891 | None:intergenic |
| GGTATAAGTTGTCAAGATTG+TGG | 0.462555 | 5.3:+12234006 | MS.gene02408:CDS |
| TGGAATAGTAGTAGTATGGC+TGG | 0.464468 | 5.3:+12233685 | None:intergenic |
| CAACAAGATCTTTACTCCTC+TGG | 0.470648 | 5.3:+12233895 | MS.gene02408:CDS |
| AAGAATTGCGTACCACTAGA+AGG | 0.471301 | 5.3:-12235209 | None:intergenic |
| TCTAGTGGTACACTCCTTGA+AGG | 0.471939 | 5.3:+12235080 | MS.gene02408:CDS |
| GAATGATGAATCAAGATCTT+GGG | 0.474567 | 5.3:-12235238 | None:intergenic |
| GTGTTTGTGGGAAGTGGAAG+TGG | 0.476364 | 5.3:+12233976 | MS.gene02408:CDS |
| CCCTGATGCTACTGCTGTTG+GGG | 0.488129 | 5.3:+12235136 | MS.gene02408:CDS |
| CTCACGCACCTGAACTCTGC+TGG | 0.492218 | 5.3:-12234909 | None:intergenic |
| TCTACTGTGTTTGTGGGAAG+TGG | 0.498034 | 5.3:+12233970 | MS.gene02408:CDS |
| GTTAGGAGTGGGACCTACTA+GGG | 0.499651 | 5.3:+12233924 | MS.gene02408:CDS |
| AGGGCTGAGCCACCCCTTCA+AGG | 0.501243 | 5.3:-12235094 | None:intergenic |
| CATCAGGGACAGAAGAGATA+AGG | 0.508932 | 5.3:-12235121 | None:intergenic |
| TCAGAAGAACAAACCCTAGT+AGG | 0.513659 | 5.3:-12233937 | None:intergenic |
| TCACTCACTCTCCCTTCAGC+AGG | 0.521572 | 5.3:+12234255 | MS.gene02408:CDS |
| GTATAAGTTGTCAAGATTGT+GGG | 0.521679 | 5.3:+12234007 | MS.gene02408:CDS |
| GAATAGATCTACTGTGTTTG+TGG | 0.527218 | 5.3:+12233963 | MS.gene02408:CDS |
| CTCTGGTGTTGTGTTAGGAG+TGG | 0.527736 | 5.3:+12233912 | MS.gene02408:CDS |
| TAAACGAGTGCAAGCTAAAG+AGG | 0.530926 | 5.3:-12234220 | None:intergenic |
| TCTGGTGTTGTGTTAGGAGT+GGG | 0.532211 | 5.3:+12233913 | MS.gene02408:CDS |
| CTAGTGGTACACTCCTTGAA+GGG | 0.532650 | 5.3:+12235081 | MS.gene02408:CDS |
| ATGAAGGAATTAAGTGGAGC+TGG | 0.538890 | 5.3:-12235185 | None:intergenic |
| AGTGTTGTTGATGTTGATGT+TGG | 0.543270 | 5.3:-12233837 | None:intergenic |
| AGAACTTGTTGTAAGAGTAG+AGG | 0.544764 | 5.3:+12234066 | MS.gene02408:CDS |
| GGAGCTGGATACAAAGAAGA+AGG | 0.554978 | 5.3:-12235170 | None:intergenic |
| AATAGATCTACTGTGTTTGT+GGG | 0.559670 | 5.3:+12233964 | MS.gene02408:CDS |
| TCAACAGCTGTAAACATTGG+AGG | 0.560848 | 5.3:+12234972 | MS.gene02408:CDS |
| CAAGTTCTACATCTCATATG+AGG | 0.561087 | 5.3:-12234051 | None:intergenic |
| GAAGGCATGAAGGAATTAAG+TGG | 0.562752 | 5.3:-12235191 | None:intergenic |
| ATGATTATGGTCCAGATCAT+GGG | 0.563960 | 5.3:+12235018 | MS.gene02408:CDS |
| GTTGTTTCTAATTCATACCG+TGG | 0.564425 | 5.3:+12233799 | MS.gene02408:CDS |
| ATGAATCAAGATCTTGGGTG+GGG | 0.569684 | 5.3:-12235233 | None:intergenic |
| AATTCCTTCATGCCTTCTAG+TGG | 0.576741 | 5.3:+12235197 | MS.gene02408:CDS |
| TGGTACACTCCTTGAAGGGG+TGG | 0.576962 | 5.3:+12235085 | MS.gene02408:CDS |
| ATATATAATATACCTGCTGA+AGG | 0.587423 | 5.3:-12234267 | None:intergenic |
| TGATGAATCAAGATCTTGGG+TGG | 0.587902 | 5.3:-12235235 | None:intergenic |
| TATTCAACAGCTGTAAACAT+TGG | 0.588034 | 5.3:+12234969 | MS.gene02408:CDS |
| CTGAAGGGAGAGTGAGTGAA+GGG | 0.593490 | 5.3:-12234251 | None:intergenic |
| CCTAAATCATCTCAACAACA+TGG | 0.595265 | 5.3:+12234171 | MS.gene02408:CDS |
| CAACAGCTGTAAACATTGGA+GGG | 0.602052 | 5.3:+12234973 | MS.gene02408:CDS |
| GATGAATCAAGATCTTGGGT+GGG | 0.609126 | 5.3:-12235234 | None:intergenic |
| CCCCAACAGCAGTAGCATCA+GGG | 0.616436 | 5.3:-12235136 | None:intergenic |
| CTCAGTTGATGAGAACGAAG+AGG | 0.617435 | 5.3:+12234938 | MS.gene02408:CDS |
| CGTACCACTAGAAGGCATGA+AGG | 0.617919 | 5.3:-12235201 | None:intergenic |
| AACTCATGTTAAGAGTACTT+GGG | 0.622414 | 5.3:+12234101 | MS.gene02408:CDS |
| GGAAGTGGAAGTGGAAGTGG+AGG | 0.626200 | 5.3:+12233985 | MS.gene02408:CDS |
| TGAATCAAGATCTTGGGTGG+GGG | 0.629021 | 5.3:-12235232 | None:intergenic |
| TATATAATATACCTGCTGAA+GGG | 0.636400 | 5.3:-12234266 | None:intergenic |
| TAGTGGTACACTCCTTGAAG+GGG | 0.649565 | 5.3:+12235082 | MS.gene02408:CDS |
| GCTGAAGGGAGAGTGAGTGA+AGG | 0.652710 | 5.3:-12234252 | None:intergenic |
| CACTCCTAACACAACACCAG+AGG | 0.667381 | 5.3:-12233911 | None:intergenic |
| GGAAACGCCTCTAATTCTAG+TGG | 0.682206 | 5.3:+12235065 | MS.gene02408:CDS |
| GGTTCCAAATCTCAAAACCA+CGG | 0.709690 | 5.3:-12233816 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAATTATCATAAAAAAAA+GGG | + | chr5.3:12234847-12234866 | MS.gene02408:intron | 10.0% |
| !! | TGTTAATTATCATAAAAAAA+AGG | + | chr5.3:12234846-12234865 | MS.gene02408:intron | 10.0% |
| !! | TAAATATGTATATATCATCA+TGG | - | chr5.3:12234791-12234810 | None:intergenic | 15.0% |
| !! | AAACAAACAAACTATAAGTT+AGG | - | chr5.3:12234814-12234833 | None:intergenic | 20.0% |
| !! | TTGGATTATTATTATTCTGT+TGG | - | chr5.3:12233744-12233763 | None:intergenic | 20.0% |
| ! | ATAAAAAAAAGGGCTATTAG+AGG | + | chr5.3:12234857-12234876 | MS.gene02408:intron | 25.0% |
| ! | ATATATAATATACCTGCTGA+AGG | - | chr5.3:12234270-12234289 | None:intergenic | 25.0% |
| ! | GACATATATGAACAAAGAAA+AGG | - | chr5.3:12234626-12234645 | None:intergenic | 25.0% |
| ! | TATATAATATACCTGCTGAA+GGG | - | chr5.3:12234269-12234288 | None:intergenic | 25.0% |
| ! | TGGGAATAATAGTTACAATA+TGG | + | chr5.3:12235037-12235056 | MS.gene02408:CDS | 25.0% |
| !! | AGAGGAATTTTGTATGATTA+TGG | + | chr5.3:12235005-12235024 | MS.gene02408:CDS | 25.0% |
| AATAGATCTACTGTGTTTGT+GGG | + | chr5.3:12233964-12233983 | MS.gene02408:CDS | 30.0% | |
| AATAGTTACAATATGGCTAC+TGG | + | chr5.3:12235044-12235063 | MS.gene02408:CDS | 30.0% | |
| ACAGAAGAGATAAGGTTTAA+GGG | - | chr5.3:12235116-12235135 | None:intergenic | 30.0% | |
| ATAATCCAACAACAGAATTC+TGG | + | chr5.3:12233755-12233774 | MS.gene02408:CDS | 30.0% | |
| ATTCTCTTCCAAAACTTTCT+CGG | - | chr5.3:12234411-12234430 | None:intergenic | 30.0% | |
| CATTGAATAACTCATGTATC+TGG | - | chr5.3:12234696-12234715 | None:intergenic | 30.0% | |
| GTATAAGTTGTCAAGATTGT+GGG | + | chr5.3:12234007-12234026 | MS.gene02408:CDS | 30.0% | |
| TAACTATTATTCCCATGATC+TGG | - | chr5.3:12235032-12235051 | None:intergenic | 30.0% | |
| TATTCAACAGCTGTAAACAT+TGG | + | chr5.3:12234969-12234988 | MS.gene02408:CDS | 30.0% | |
| TTATACCAGAATTCTGTTGT+TGG | - | chr5.3:12233763-12233782 | None:intergenic | 30.0% | |
| ! | CTTCTGAAAAAGATAAGTGA+AGG | + | chr5.3:12234383-12234402 | MS.gene02408:intron | 30.0% |
| !! | AAACTCATGTTAAGAGTACT+TGG | + | chr5.3:12234100-12234119 | MS.gene02408:CDS | 30.0% |
| !! | AACTCATGTTAAGAGTACTT+GGG | + | chr5.3:12234101-12234120 | MS.gene02408:CDS | 30.0% |
| !!! | ATGGCTGGTTTATTTTCATT+AGG | + | chr5.3:12233700-12233719 | MS.gene02408:CDS | 30.0% |
| AATGAATGGGATCAATGACA+GGG | + | chr5.3:12234499-12234518 | MS.gene02408:intron | 35.0% | |
| ATGATTATGGTCCAGATCAT+GGG | + | chr5.3:12235018-12235037 | MS.gene02408:CDS | 35.0% | |
| CAAGTTCTACATCTCATATG+AGG | - | chr5.3:12234054-12234073 | None:intergenic | 35.0% | |
| CCATGTTGTTGAGATGATTT+AGG | - | chr5.3:12234174-12234193 | None:intergenic | 35.0% | |
| CCTAAATCATCTCAACAACA+TGG | + | chr5.3:12234171-12234190 | MS.gene02408:CDS | 35.0% | |
| GAATAGATCTACTGTGTTTG+TGG | + | chr5.3:12233963-12233982 | MS.gene02408:CDS | 35.0% | |
| GACAGAAGAGATAAGGTTTA+AGG | - | chr5.3:12235117-12235136 | None:intergenic | 35.0% | |
| GGTATAAGTTGTCAAGATTG+TGG | + | chr5.3:12234006-12234025 | MS.gene02408:CDS | 35.0% | |
| TATGATTATGGTCCAGATCA+TGG | + | chr5.3:12235017-12235036 | MS.gene02408:CDS | 35.0% | |
| TGTTGTTCTGACGAATGAAT+GGG | + | chr5.3:12234486-12234505 | MS.gene02408:intron | 35.0% | |
| ! | AGTGTTGTTGATGTTGATGT+TGG | - | chr5.3:12233840-12233859 | None:intergenic | 35.0% |
| !! | AAAGTAGTGTTGTTGGTTTG+TGG | - | chr5.3:12234592-12234611 | None:intergenic | 35.0% |
| !! | AGAACTTGTTGTAAGAGTAG+AGG | + | chr5.3:12234066-12234085 | MS.gene02408:CDS | 35.0% |
| !! | GTTGTTTCTAATTCATACCG+TGG | + | chr5.3:12233799-12233818 | MS.gene02408:CDS | 35.0% |
| AAGAATTGCGTACCACTAGA+AGG | - | chr5.3:12235212-12235231 | None:intergenic | 40.0% | |
| AATTCCTTCATGCCTTCTAG+TGG | + | chr5.3:12235197-12235216 | MS.gene02408:CDS | 40.0% | |
| AGCTGTGAAAGTAGTGTTGT+TGG | - | chr5.3:12234599-12234618 | None:intergenic | 40.0% | |
| ATGAAGGAATTAAGTGGAGC+TGG | - | chr5.3:12235188-12235207 | None:intergenic | 40.0% | |
| CAACAAGATCTTTACTCCTC+TGG | + | chr5.3:12233895-12233914 | MS.gene02408:CDS | 40.0% | |
| CAACAGCTGTAAACATTGGA+GGG | + | chr5.3:12234973-12234992 | MS.gene02408:CDS | 40.0% | |
| GAATGAATGGGATCAATGAC+AGG | + | chr5.3:12234498-12234517 | MS.gene02408:intron | 40.0% | |
| GAGTGTACCACTAGAATTAG+AGG | - | chr5.3:12235075-12235094 | None:intergenic | 40.0% | |
| GGTTCCAAATCTCAAAACCA+CGG | - | chr5.3:12233819-12233838 | None:intergenic | 40.0% | |
| TAAACGAGTGCAAGCTAAAG+AGG | - | chr5.3:12234223-12234242 | None:intergenic | 40.0% | |
| TCAACAGCTGTAAACATTGG+AGG | + | chr5.3:12234972-12234991 | MS.gene02408:CDS | 40.0% | |
| TCAGAAGAACAAACCCTAGT+AGG | - | chr5.3:12233940-12233959 | None:intergenic | 40.0% | |
| ! | GAAGGCATGAAGGAATTAAG+TGG | - | chr5.3:12235194-12235213 | None:intergenic | 40.0% |
| ! | GTGTTGTTCTGACGAATGAA+TGG | + | chr5.3:12234485-12234504 | MS.gene02408:intron | 40.0% |
| ! | TCGTCAGAACAACACTGTTT+TGG | - | chr5.3:12234480-12234499 | None:intergenic | 40.0% |
| !!! | ATTGGAGGGCATGTTTTTAG+AGG | + | chr5.3:12234987-12235006 | MS.gene02408:CDS | 40.0% |
| !!! | CATACCGTGGTTTTGAGATT+TGG | + | chr5.3:12233812-12233831 | MS.gene02408:CDS | 40.0% |
| !!! | TGAAGGTACCGAGAAAGTTT+TGG | + | chr5.3:12234400-12234419 | MS.gene02408:intron | 40.0% |
| AGAGTGAGTGAAGGGTTTGT+AGG | - | chr5.3:12234246-12234265 | None:intergenic | 45.0% | |
| CATCAGGGACAGAAGAGATA+AGG | - | chr5.3:12235124-12235143 | None:intergenic | 45.0% | |
| CTAGTGGTACACTCCTTGAA+GGG | + | chr5.3:12235081-12235100 | MS.gene02408:CDS | 45.0% | |
| CTTTCTCTTCTTCTAGCAGC+AGG | - | chr5.3:12234129-12234148 | None:intergenic | 45.0% | |
| GGAAACGCCTCTAATTCTAG+TGG | + | chr5.3:12235065-12235084 | MS.gene02408:CDS | 45.0% | |
| GGAGCTGGATACAAAGAAGA+AGG | - | chr5.3:12235173-12235192 | None:intergenic | 45.0% | |
| TAGTGGTACACTCCTTGAAG+GGG | + | chr5.3:12235082-12235101 | MS.gene02408:CDS | 45.0% | |
| TCTACTGTGTTTGTGGGAAG+TGG | + | chr5.3:12233970-12233989 | MS.gene02408:CDS | 45.0% | |
| TCTAGTGGTACACTCCTTGA+AGG | + | chr5.3:12235080-12235099 | MS.gene02408:CDS | 45.0% | |
| TGAATTCTCCAGCAGAGTTC+AGG | + | chr5.3:12234901-12234920 | MS.gene02408:CDS | 45.0% | |
| ! | GGAGATGAATTTTCCAGCTG+TGG | + | chr5.3:12234878-12234897 | MS.gene02408:CDS | 45.0% |
| ! | TGTGGAAGAGTGAGTGTTGT+TGG | - | chr5.3:12234574-12234593 | None:intergenic | 45.0% |
| !! | CTCAGTTGATGAGAACGAAG+AGG | + | chr5.3:12234938-12234957 | MS.gene02408:CDS | 45.0% |
| !! | TACTCCTCTGGTGTTGTGTT+AGG | + | chr5.3:12233907-12233926 | MS.gene02408:CDS | 45.0% |
| !! | TCTGGTGTTGTGTTAGGAGT+GGG | + | chr5.3:12233913-12233932 | MS.gene02408:CDS | 45.0% |
| CACTCCTAACACAACACCAG+AGG | - | chr5.3:12233914-12233933 | None:intergenic | 50.0% | |
| CTGAAGGGAGAGTGAGTGAA+GGG | - | chr5.3:12234254-12234273 | None:intergenic | 50.0% | |
| GTGTTTGTGGGAAGTGGAAG+TGG | + | chr5.3:12233976-12233995 | MS.gene02408:CDS | 50.0% | |
| GTTAGGAGTGGGACCTACTA+GGG | + | chr5.3:12233924-12233943 | MS.gene02408:CDS | 50.0% | |
| TCCCTGATGCTACTGCTGTT+GGG | + | chr5.3:12235135-12235154 | MS.gene02408:CDS | 50.0% | |
| TGTTAGGAGTGGGACCTACT+AGG | + | chr5.3:12233923-12233942 | MS.gene02408:CDS | 50.0% | |
| ! | CGTACCACTAGAAGGCATGA+AGG | - | chr5.3:12235204-12235223 | None:intergenic | 50.0% |
| !! | CTCTGGTGTTGTGTTAGGAG+TGG | + | chr5.3:12233912-12233931 | MS.gene02408:CDS | 50.0% |
| CCCCAACAGCAGTAGCATCA+GGG | - | chr5.3:12235139-12235158 | None:intergenic | 55.0% | |
| CCCTGATGCTACTGCTGTTG+GGG | + | chr5.3:12235136-12235155 | MS.gene02408:CDS | 55.0% | |
| GCTGAAGGGAGAGTGAGTGA+AGG | - | chr5.3:12234255-12234274 | None:intergenic | 55.0% | |
| GCTGGAGAATTCACCACAGC+TGG | - | chr5.3:12234894-12234913 | None:intergenic | 55.0% | |
| GGAAGTGGAAGTGGAAGTGG+AGG | + | chr5.3:12233985-12234004 | MS.gene02408:CDS | 55.0% | |
| GTCCCTGATGCTACTGCTGT+TGG | + | chr5.3:12235134-12235153 | MS.gene02408:CDS | 55.0% | |
| GTGGGAAGTGGAAGTGGAAG+TGG | + | chr5.3:12233982-12234001 | MS.gene02408:CDS | 55.0% | |
| TCACTCACTCTCCCTTCAGC+AGG | + | chr5.3:12234255-12234274 | MS.gene02408:CDS | 55.0% | |
| TCCCCAACAGCAGTAGCATC+AGG | - | chr5.3:12235140-12235159 | None:intergenic | 55.0% | |
| TGGTACACTCCTTGAAGGGG+TGG | + | chr5.3:12235085-12235104 | MS.gene02408:CDS | 55.0% | |
| CTCACGCACCTGAACTCTGC+TGG | - | chr5.3:12234912-12234931 | None:intergenic | 60.0% | |
| TGTTGCTGCTGCTGCTGCTG+AGG | - | chr5.3:12233880-12233899 | None:intergenic | 60.0% | |
| AGGGCTGAGCCACCCCTTCA+AGG | - | chr5.3:12235097-12235116 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 12233700 | 12235250 | 12233700 | ID=MS.gene02408 |
| chr5.3 | mRNA | 12233700 | 12235250 | 12233700 | ID=MS.gene02408.t1;Parent=MS.gene02408 |
| chr5.3 | exon | 12233700 | 12234276 | 12233700 | ID=MS.gene02408.t1.exon1;Parent=MS.gene02408.t1 |
| chr5.3 | CDS | 12233700 | 12234276 | 12233700 | ID=cds.MS.gene02408.t1;Parent=MS.gene02408.t1 |
| chr5.3 | exon | 12234868 | 12235250 | 12234868 | ID=MS.gene02408.t1.exon2;Parent=MS.gene02408.t1 |
| chr5.3 | CDS | 12234868 | 12235250 | 12234868 | ID=cds.MS.gene02408.t1;Parent=MS.gene02408.t1 |
| Gene Sequence |
| Protein sequence |
