Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024085.t1 | XP_003624235.1 | 91.8 | 341 | 21 | 3 | 1 | 340 | 1 | 335 | 2.80E-160 | 574.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024085.t1 | Q9T072 | 37.4 | 227 | 119 | 6 | 118 | 332 | 109 | 324 | 3.3e-24 | 114.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024085.t1 | G7KSG4 | 91.8 | 341 | 21 | 3 | 1 | 340 | 1 | 335 | 2.0e-160 | 574.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene024085.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024085.t1 | MTR_7g080780 | 91.789 | 341 | 21 | 3 | 1 | 340 | 1 | 335 | 0.0 | 597 |
| MS.gene024085.t1 | MTR_7g080780 | 91.463 | 328 | 21 | 3 | 14 | 340 | 1 | 322 | 0.0 | 572 |
| MS.gene024085.t1 | MTR_8g009020 | 44.800 | 250 | 106 | 5 | 115 | 338 | 84 | 327 | 7.32e-58 | 190 |
| MS.gene024085.t1 | MTR_2g104490 | 36.571 | 350 | 160 | 10 | 1 | 332 | 1 | 306 | 3.49e-52 | 175 |
| MS.gene024085.t1 | MTR_4g009540 | 36.957 | 368 | 161 | 13 | 1 | 334 | 1 | 331 | 1.17e-51 | 174 |
| MS.gene024085.t1 | MTR_2g104550 | 37.216 | 352 | 161 | 9 | 1 | 333 | 1 | 311 | 6.91e-51 | 172 |
| MS.gene024085.t1 | MTR_4g009110 | 33.154 | 371 | 190 | 7 | 1 | 334 | 1 | 350 | 7.79e-51 | 172 |
| MS.gene024085.t1 | MTR_8g009010 | 36.190 | 315 | 131 | 9 | 28 | 329 | 10 | 267 | 4.21e-49 | 167 |
| MS.gene024085.t1 | MTR_2g104490 | 36.061 | 330 | 151 | 9 | 1 | 313 | 1 | 287 | 5.18e-48 | 164 |
| MS.gene024085.t1 | MTR_4g009540 | 36.888 | 347 | 148 | 13 | 1 | 313 | 1 | 310 | 1.59e-46 | 160 |
| MS.gene024085.t1 | MTR_5g014600 | 34.441 | 331 | 167 | 10 | 48 | 333 | 9 | 334 | 8.75e-43 | 151 |
| MS.gene024085.t1 | MTR_0250s0040 | 40.761 | 184 | 100 | 2 | 160 | 334 | 78 | 261 | 2.05e-40 | 143 |
| MS.gene024085.t1 | MTR_5g014520 | 40.476 | 210 | 104 | 4 | 141 | 335 | 128 | 331 | 9.96e-40 | 143 |
| MS.gene024085.t1 | MTR_2g104560 | 43.085 | 188 | 97 | 3 | 157 | 337 | 44 | 228 | 1.04e-39 | 140 |
| MS.gene024085.t1 | MTR_4g092700 | 45.355 | 183 | 91 | 2 | 156 | 329 | 144 | 326 | 1.35e-39 | 142 |
| MS.gene024085.t1 | MTR_5g014640 | 43.429 | 175 | 93 | 1 | 165 | 333 | 149 | 323 | 2.01e-39 | 142 |
| MS.gene024085.t1 | MTR_4g097940 | 45.349 | 172 | 87 | 2 | 168 | 332 | 153 | 324 | 1.11e-38 | 140 |
| MS.gene024085.t1 | MTR_6g047570 | 38.865 | 229 | 123 | 5 | 115 | 329 | 102 | 327 | 3.90e-37 | 136 |
| MS.gene024085.t1 | MTR_4g097920 | 43.605 | 172 | 90 | 2 | 168 | 332 | 138 | 309 | 5.94e-37 | 135 |
| MS.gene024085.t1 | MTR_0011s0210 | 41.667 | 180 | 96 | 1 | 169 | 339 | 182 | 361 | 7.12e-37 | 136 |
| MS.gene024085.t1 | MTR_4g097920 | 43.605 | 172 | 90 | 2 | 168 | 332 | 153 | 324 | 8.32e-37 | 135 |
| MS.gene024085.t1 | MTR_0011s0260 | 42.105 | 171 | 90 | 1 | 169 | 330 | 182 | 352 | 1.97e-36 | 135 |
| MS.gene024085.t1 | MTR_0246s0020 | 38.000 | 200 | 109 | 2 | 155 | 340 | 183 | 381 | 3.64e-35 | 132 |
| MS.gene024085.t1 | MTR_4g067010 | 38.953 | 172 | 99 | 2 | 169 | 334 | 146 | 317 | 5.69e-34 | 127 |
| MS.gene024085.t1 | MTR_2g104500 | 35.371 | 229 | 131 | 4 | 110 | 334 | 57 | 272 | 1.06e-33 | 125 |
| MS.gene024085.t1 | MTR_4g066460 | 37.143 | 210 | 121 | 4 | 132 | 334 | 120 | 325 | 1.70e-33 | 126 |
| MS.gene024085.t1 | MTR_2g010450 | 40.426 | 188 | 102 | 2 | 152 | 329 | 159 | 346 | 2.62e-33 | 126 |
| MS.gene024085.t1 | MTR_8g069740 | 33.117 | 308 | 137 | 10 | 24 | 312 | 8 | 265 | 2.79e-33 | 124 |
| MS.gene024085.t1 | MTR_5g014560 | 37.500 | 176 | 101 | 1 | 169 | 335 | 130 | 305 | 1.14e-31 | 121 |
| MS.gene024085.t1 | MTR_2g104650 | 39.423 | 208 | 100 | 5 | 134 | 329 | 71 | 264 | 2.13e-31 | 119 |
| MS.gene024085.t1 | MTR_0246s0020 | 38.172 | 186 | 98 | 3 | 155 | 324 | 183 | 367 | 3.44e-31 | 121 |
| MS.gene024085.t1 | MTR_4g097950 | 34.836 | 244 | 129 | 6 | 117 | 334 | 11 | 250 | 4.75e-31 | 118 |
| MS.gene024085.t1 | MTR_2g104530 | 39.412 | 170 | 98 | 1 | 171 | 335 | 106 | 275 | 1.05e-30 | 117 |
| MS.gene024085.t1 | MTR_4g066380 | 34.884 | 215 | 126 | 5 | 132 | 336 | 118 | 328 | 1.65e-30 | 118 |
| MS.gene024085.t1 | MTR_4g098035 | 28.947 | 266 | 165 | 7 | 82 | 334 | 84 | 338 | 4.82e-26 | 106 |
| MS.gene024085.t1 | MTR_0246s0050 | 29.119 | 261 | 161 | 7 | 82 | 329 | 63 | 312 | 5.32e-26 | 106 |
| MS.gene024085.t1 | MTR_2g104590 | 37.634 | 186 | 80 | 5 | 156 | 329 | 58 | 219 | 1.41e-25 | 102 |
| MS.gene024085.t1 | MTR_4g009420 | 37.500 | 168 | 93 | 4 | 163 | 329 | 36 | 192 | 3.23e-23 | 95.5 |
| MS.gene024085.t1 | MTR_7g451650 | 38.686 | 137 | 83 | 1 | 193 | 329 | 57 | 192 | 1.53e-22 | 94.0 |
| MS.gene024085.t1 | MTR_4g009510 | 37.748 | 151 | 91 | 3 | 180 | 329 | 52 | 200 | 1.32e-20 | 89.0 |
| MS.gene024085.t1 | MTR_7g050350 | 37.405 | 131 | 81 | 1 | 199 | 329 | 1 | 130 | 3.33e-20 | 85.9 |
| MS.gene024085.t1 | MTR_7g451650 | 37.405 | 131 | 81 | 1 | 199 | 329 | 1 | 130 | 3.33e-20 | 85.9 |
| MS.gene024085.t1 | MTR_4g009420 | 37.500 | 152 | 83 | 4 | 163 | 313 | 36 | 176 | 1.13e-18 | 83.6 |
| MS.gene024085.t1 | MTR_7g451650 | 38.843 | 121 | 73 | 1 | 193 | 313 | 57 | 176 | 4.06e-18 | 81.6 |
| MS.gene024085.t1 | MTR_6g047550 | 54.667 | 75 | 33 | 1 | 156 | 230 | 160 | 233 | 2.59e-17 | 81.3 |
| MS.gene024085.t1 | MTR_5g014550 | 32.787 | 122 | 73 | 2 | 200 | 312 | 54 | 175 | 4.75e-13 | 67.4 |
| MS.gene024085.t1 | MTR_8g024790 | 26.733 | 202 | 128 | 6 | 134 | 319 | 256 | 453 | 6.92e-12 | 66.6 |
| MS.gene024085.t1 | MTR_8g064700 | 23.737 | 198 | 120 | 5 | 152 | 333 | 233 | 415 | 7.20e-11 | 63.2 |
| MS.gene024085.t1 | MTR_1g112680 | 28.302 | 106 | 69 | 1 | 131 | 229 | 271 | 376 | 9.72e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024085.t1 | AT2G22770 | 40.000 | 195 | 93 | 2 | 164 | 334 | 126 | 320 | 3.07e-34 | 128 |
| MS.gene024085.t1 | AT4G37850 | 36.564 | 227 | 121 | 4 | 118 | 332 | 109 | 324 | 1.82e-33 | 126 |
| MS.gene024085.t1 | AT4G37850 | 36.564 | 227 | 121 | 4 | 118 | 332 | 109 | 324 | 1.82e-33 | 126 |
| MS.gene024085.t1 | AT2G22760 | 39.286 | 196 | 99 | 5 | 152 | 329 | 98 | 291 | 1.88e-32 | 123 |
| MS.gene024085.t1 | AT2G22750 | 42.857 | 189 | 92 | 3 | 155 | 328 | 110 | 297 | 6.74e-31 | 119 |
| MS.gene024085.t1 | AT2G22750 | 42.857 | 189 | 92 | 3 | 155 | 328 | 138 | 325 | 1.16e-30 | 119 |
| MS.gene024085.t1 | AT2G22750 | 42.857 | 189 | 92 | 3 | 155 | 328 | 134 | 321 | 1.49e-30 | 118 |
| MS.gene024085.t1 | AT2G22750 | 43.386 | 189 | 90 | 4 | 155 | 328 | 110 | 296 | 3.10e-30 | 117 |
| MS.gene024085.t1 | AT2G22750 | 43.386 | 189 | 90 | 4 | 155 | 328 | 138 | 324 | 5.02e-30 | 117 |
| MS.gene024085.t1 | AT2G22760 | 37.430 | 179 | 93 | 4 | 152 | 313 | 98 | 274 | 5.66e-27 | 108 |
| MS.gene024085.t1 | AT4G09820 | 31.452 | 124 | 74 | 2 | 171 | 294 | 364 | 476 | 9.93e-15 | 75.5 |
| MS.gene024085.t1 | AT5G57150 | 28.485 | 165 | 99 | 5 | 171 | 317 | 55 | 218 | 1.92e-12 | 66.6 |
| MS.gene024085.t1 | AT5G57150 | 28.758 | 153 | 91 | 4 | 171 | 305 | 56 | 208 | 2.39e-12 | 66.2 |
| MS.gene024085.t1 | AT5G57150 | 28.758 | 153 | 91 | 4 | 171 | 305 | 56 | 208 | 2.47e-12 | 65.9 |
| MS.gene024085.t1 | AT5G57150 | 27.848 | 158 | 86 | 4 | 171 | 305 | 55 | 207 | 2.54e-12 | 65.9 |
| MS.gene024085.t1 | AT5G57150 | 27.848 | 158 | 86 | 4 | 171 | 305 | 56 | 208 | 6.82e-12 | 65.5 |
| MS.gene024085.t1 | AT4G29930 | 26.144 | 153 | 111 | 2 | 171 | 322 | 55 | 206 | 9.03e-12 | 64.3 |
| MS.gene024085.t1 | AT5G46760 | 22.672 | 247 | 147 | 6 | 75 | 297 | 329 | 555 | 9.98e-12 | 66.2 |
Find 52 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAATTTGATTTCTTATA+TGG | 0.194480 | 7.4:-25664522 | MS.gene024085:intron |
| GCCACATACCTTCTATCTTT+TGG | 0.267929 | 7.4:-25664093 | MS.gene024085:CDS |
| ACTTAATGGCTGAGAGAAAA+AGG | 0.287774 | 7.4:-25663930 | MS.gene024085:CDS |
| CTCCAACTCAATCAAGTCTT+TGG | 0.295695 | 7.4:-25664139 | MS.gene024085:CDS |
| TCAAAAGCGCATTAAAGAAT+TGG | 0.305540 | 7.4:-25662931 | MS.gene024085:CDS |
| GACAGTGCAAGATCACTTAA+TGG | 0.320859 | 7.4:-25663944 | MS.gene024085:CDS |
| GATTTCCACTTGAATATTGC+TGG | 0.322703 | 7.4:+25662879 | None:intergenic |
| CATGATACCTGGCTTGAAAA+AGG | 0.331924 | 7.4:-25663869 | MS.gene024085:intron |
| GAAGAGGGTTCACATGATTC+TGG | 0.333045 | 7.4:+25664318 | None:intergenic |
| CAATGTCACATAAAACTAAA+AGG | 0.349007 | 7.4:-25664041 | MS.gene024085:CDS |
| ACTAAAAGGAGGGGTACTAT+AGG | 0.369752 | 7.4:-25664027 | MS.gene024085:CDS |
| TGTGACATTGGTTCAATGAT+TGG | 0.382838 | 7.4:+25664054 | None:intergenic |
| CACATGATTCTGGTTCTTCA+AGG | 0.387684 | 7.4:+25664328 | None:intergenic |
| CTAAAAGGAGGGGTACTATA+GGG | 0.401026 | 7.4:-25664026 | MS.gene024085:CDS |
| TATAGTTGTACTATTGTCTT+GGG | 0.401514 | 7.4:+25664275 | None:intergenic |
| AAATCTGAGAAAATATCTAT+TGG | 0.423346 | 7.4:-25661805 | MS.gene024085:CDS |
| CTATAGTTGTACTATTGTCT+TGG | 0.429287 | 7.4:+25664274 | None:intergenic |
| TGTAATCAACATTTGTGCTC+AGG | 0.432810 | 7.4:-25662661 | MS.gene024085:intron |
| TTGAGTTACCAAAAGATAGA+AGG | 0.445013 | 7.4:+25664085 | None:intergenic |
| GCACTTTCAGCCATGATACC+TGG | 0.455730 | 7.4:-25663880 | MS.gene024085:CDS |
| AAGGACAAAATACTATTTGT+GGG | 0.455985 | 7.4:+25664225 | None:intergenic |
| AAAGGACAAAATACTATTTG+TGG | 0.457372 | 7.4:+25664224 | None:intergenic |
| TTCCAAAGACTTGATTGAGT+TGG | 0.458779 | 7.4:+25664137 | None:intergenic |
| AGCAGTACCATGTTACCATT+TGG | 0.468184 | 7.4:-25662696 | MS.gene024085:CDS |
| TGCAACAATGGAGGATTCAC+TGG | 0.488783 | 7.4:-25664543 | None:intergenic |
| TGAAGCTAGAGTCAAAGAAA+AGG | 0.495694 | 7.4:-25662808 | MS.gene024085:CDS |
| TTGCTCATCAAATGTGGTGG+TGG | 0.503552 | 7.4:+25664371 | None:intergenic |
| AATTCATTGTGAGAAGCAAA+AGG | 0.506739 | 7.4:-25662772 | MS.gene024085:CDS |
| ACAACTATAGTTAATGTTGA+AGG | 0.511718 | 7.4:-25664261 | MS.gene024085:CDS |
| TCTGAGAAAATATCTATTGG+AGG | 0.519320 | 7.4:-25661802 | MS.gene024085:CDS |
| GAAAGATGAAGCAAGGGTGA+AGG | 0.528465 | 7.4:-25664004 | MS.gene024085:CDS |
| GTCACATAAAACTAAAAGGA+GGG | 0.537994 | 7.4:-25664037 | MS.gene024085:CDS |
| AAAGATAGAAGGTATGTGGC+TGG | 0.543699 | 7.4:+25664096 | None:intergenic |
| ATTGGAACAAAGATAAGAAG+AGG | 0.546112 | 7.4:+25664302 | None:intergenic |
| TGAAGAAGACAGCATGGCCA+TGG | 0.560524 | 7.4:-25661841 | MS.gene024085:CDS |
| AATCTCAAGCAGTGATTGTG+AGG | 0.568261 | 7.4:+25662830 | None:intergenic |
| ACCAAAAGATAGAAGGTATG+TGG | 0.570819 | 7.4:+25664092 | None:intergenic |
| ACAAGAATAGAAGCACCAAA+TGG | 0.574238 | 7.4:+25662681 | None:intergenic |
| CAAATCCAGCAATATTCAAG+TGG | 0.578490 | 7.4:-25662884 | MS.gene024085:CDS |
| AAATAAACTTGTCTCATCAA+AGG | 0.579876 | 7.4:+25664206 | None:intergenic |
| CTATAGGGAAAGATGAAGCA+AGG | 0.582480 | 7.4:-25664011 | MS.gene024085:CDS |
| GGTGAAGGAAGCAACAAAGA+AGG | 0.584977 | 7.4:-25663989 | MS.gene024085:CDS |
| TTGGAACAAAGATAAGAAGA+GGG | 0.598491 | 7.4:+25664303 | None:intergenic |
| CATGGCCATGGATGACCTTG+TGG | 0.614537 | 7.4:-25661829 | MS.gene024085:CDS |
| CTCTTGCTCATCAAATGTGG+TGG | 0.624271 | 7.4:+25664368 | None:intergenic |
| TGTCACATAAAACTAAAAGG+AGG | 0.628863 | 7.4:-25664038 | MS.gene024085:CDS |
| AGAAGCACCAAATGGTAACA+TGG | 0.632448 | 7.4:+25662689 | None:intergenic |
| TATAGGGAAAGATGAAGCAA+GGG | 0.632516 | 7.4:-25664010 | MS.gene024085:CDS |
| TCACATAAAACTAAAAGGAG+GGG | 0.633390 | 7.4:-25664036 | MS.gene024085:CDS |
| AAACTCTTGCTCATCAAATG+TGG | 0.646764 | 7.4:+25664365 | None:intergenic |
| GATGGATGAAGAAGACAGCA+TGG | 0.648869 | 7.4:-25661847 | MS.gene024085:CDS |
| AGGACAAAATACTATTTGTG+GGG | 0.660565 | 7.4:+25664226 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTATAATTGAATATTAA+AGG | - | chr7.4:25663269-25663288 | MS.gene024085:intron | 10.0% |
| !!! | AACTAATTTGATTTTTTTTA+AGG | + | chr7.4:25662792-25662811 | None:intergenic | 10.0% |
| !!! | AATTGAAAGATTTTTTATTT+TGG | + | chr7.4:25663979-25663998 | None:intergenic | 10.0% |
| !!! | ATGATATTTTGATTTTTTTA+GGG | + | chr7.4:25662978-25662997 | None:intergenic | 10.0% |
| !!! | ATTGAAAGATTTTTTATTTT+GGG | + | chr7.4:25663978-25663997 | None:intergenic | 10.0% |
| !!! | TATGATATTTTGATTTTTTT+AGG | + | chr7.4:25662979-25662998 | None:intergenic | 10.0% |
| !!! | TTATATCATTATTTGTTAAT+TGG | - | chr7.4:25661862-25661881 | MS.gene024085:intron | 10.0% |
| !! | AAAAAAATCAAAAAGAGTAA+AGG | - | chr7.4:25664364-25664383 | MS.gene024085:CDS | 15.0% |
| !! | AAAACTACTTTACAAAATTA+TGG | - | chr7.4:25662674-25662693 | MS.gene024085:CDS | 15.0% |
| !! | AAACTACTTTACAAAATTAT+GGG | - | chr7.4:25662675-25662694 | MS.gene024085:CDS | 15.0% |
| !! | ATAGTTTATTATTATATGCA+AGG | + | chr7.4:25663808-25663827 | None:intergenic | 15.0% |
| !! | GAAATGATTAATATCTTATT+GGG | + | chr7.4:25663879-25663898 | None:intergenic | 15.0% |
| !! | GTTTAATTCTGTATTATTAT+CGG | - | chr7.4:25663141-25663160 | MS.gene024085:intron | 15.0% |
| !! | TAGTTTATTATTATATGCAA+GGG | + | chr7.4:25663807-25663826 | None:intergenic | 15.0% |
| !! | TGAAATGATTAATATCTTAT+TGG | + | chr7.4:25663880-25663899 | None:intergenic | 15.0% |
| !!! | CTATCTTAGTATAATTTTTT+TGG | - | chr7.4:25663214-25663233 | MS.gene024085:intron | 15.0% |
| !!! | TTTTAACAAATCTTTGTTAT+TGG | - | chr7.4:25664276-25664295 | MS.gene024085:CDS | 15.0% |
| !!! | TTTTTATTATCTTTGATCAT+AGG | - | chr7.4:25661891-25661910 | MS.gene024085:intron | 15.0% |
| !! | AAATCTGAGAAAATATCTAT+TGG | - | chr7.4:25664513-25664532 | MS.gene024085:intron | 20.0% |
| !! | AATTACAATATAAAGTCAGA+TGG | + | chr7.4:25663301-25663320 | None:intergenic | 20.0% |
| !! | ATTAATATCTTATTGGGTTA+AGG | + | chr7.4:25663873-25663892 | None:intergenic | 20.0% |
| !! | ATTACAATATAAAGTCAGAT+GGG | + | chr7.4:25663300-25663319 | None:intergenic | 20.0% |
| !! | ATTTCTCTAATTACTATAGA+TGG | - | chr7.4:25663318-25663337 | MS.gene024085:intron | 20.0% |
| !! | TAAATAAATTCGTACGATAA+TGG | + | chr7.4:25662556-25662575 | None:intergenic | 20.0% |
| !!! | ACAACTTTTTTTCTTCAAAT+AGG | + | chr7.4:25663955-25663974 | None:intergenic | 20.0% |
| !!! | ATAAATCAATCATTTTGGAA+TGG | - | chr7.4:25664171-25664190 | MS.gene024085:CDS | 20.0% |
| !!! | CTTTTAAAGATGAATAAGTA+AGG | - | chr7.4:25663760-25663779 | MS.gene024085:intron | 20.0% |
| !!! | GTCAAATAAATCAATCATTT+TGG | - | chr7.4:25664166-25664185 | MS.gene024085:CDS | 20.0% |
| !!! | TTATTTCTATTTGTGTGAAA+TGG | - | chr7.4:25664144-25664163 | MS.gene024085:CDS | 20.0% |
| ! | AAAAAAAATCGAGCTTAAAG+TGG | - | chr7.4:25662852-25662871 | MS.gene024085:CDS | 25.0% |
| ! | AAAAAAATCGAGCTTAAAGT+GGG | - | chr7.4:25662853-25662872 | MS.gene024085:CDS | 25.0% |
| ! | AAAGGACAAAATACTATTTG+TGG | + | chr7.4:25662097-25662116 | None:intergenic | 25.0% |
| ! | AAATAAACTTGTCTCATCAA+AGG | + | chr7.4:25662115-25662134 | None:intergenic | 25.0% |
| ! | AAGGACAAAATACTATTTGT+GGG | + | chr7.4:25662096-25662115 | None:intergenic | 25.0% |
| ! | ACAACTATAGTTAATGTTGA+AGG | - | chr7.4:25662057-25662076 | MS.gene024085:intron | 25.0% |
| ! | CAATGTCACATAAAACTAAA+AGG | - | chr7.4:25662277-25662296 | MS.gene024085:intron | 25.0% |
| ! | TATAGTTGTACTATTGTCTT+GGG | + | chr7.4:25662046-25662065 | None:intergenic | 25.0% |
| ! | TATATTGATAAACCTCAATG+TGG | - | chr7.4:25664203-25664222 | MS.gene024085:CDS | 25.0% |
| ! | TTATCTTTGATCATAGGAAA+TGG | - | chr7.4:25661897-25661916 | MS.gene024085:intron | 25.0% |
| !! | AAAAAGTCAATGAAAAGCAT+AGG | + | chr7.4:25663090-25663109 | None:intergenic | 25.0% |
| !! | AAGCCAAAACAACTTTTATA+TGG | - | chr7.4:25662732-25662751 | MS.gene024085:CDS | 25.0% |
| !! | CATCCATATAAAAGTTGTTT+TGG | + | chr7.4:25662738-25662757 | None:intergenic | 25.0% |
| !! | GATCTCTAATTTGTAATGTT+GGG | - | chr7.4:25664411-25664430 | MS.gene024085:intron | 25.0% |
| !! | GGAGAATTTGATTTCTTATA+TGG | - | chr7.4:25661796-25661815 | MS.gene024085:CDS | 25.0% |
| !! | TGATCTCTAATTTGTAATGT+TGG | - | chr7.4:25664410-25664429 | MS.gene024085:intron | 25.0% |
| !!! | CTTTTAGTTTTATGTGACAT+TGG | + | chr7.4:25662279-25662298 | None:intergenic | 25.0% |
| AAAAAATCGAGCTTAAAGTG+GGG | - | chr7.4:25662854-25662873 | MS.gene024085:CDS | 30.0% | |
| AATTCATTGTGAGAAGCAAA+AGG | - | chr7.4:25663546-25663565 | MS.gene024085:intron | 30.0% | |
| AGGACAAAATACTATTTGTG+GGG | + | chr7.4:25662095-25662114 | None:intergenic | 30.0% | |
| ATTGGAACAAAGATAAGAAG+AGG | + | chr7.4:25662019-25662038 | None:intergenic | 30.0% | |
| CTATAGTTGTACTATTGTCT+TGG | + | chr7.4:25662047-25662066 | None:intergenic | 30.0% | |
| GTCACATAAAACTAAAAGGA+GGG | - | chr7.4:25662281-25662300 | MS.gene024085:intron | 30.0% | |
| TCACATAAAACTAAAAGGAG+GGG | - | chr7.4:25662282-25662301 | MS.gene024085:intron | 30.0% | |
| TCTGAGAAAATATCTATTGG+AGG | - | chr7.4:25664516-25664535 | MS.gene024085:intron | 30.0% | |
| TGCTTATGTTCACACTAAAA+TGG | - | chr7.4:25664227-25664246 | MS.gene024085:CDS | 30.0% | |
| TGTCACATAAAACTAAAAGG+AGG | - | chr7.4:25662280-25662299 | MS.gene024085:intron | 30.0% | |
| TTGAGTTACCAAAAGATAGA+AGG | + | chr7.4:25662236-25662255 | None:intergenic | 30.0% | |
| TTGGAACAAAGATAAGAAGA+GGG | + | chr7.4:25662018-25662037 | None:intergenic | 30.0% | |
| ! | ATGAATAAGTAAGGTGTCTA+GGG | - | chr7.4:25663769-25663788 | MS.gene024085:intron | 30.0% |
| ! | ATTTTCTCAGATTTTCCACA+AGG | + | chr7.4:25664507-25664526 | None:intergenic | 30.0% |
| ! | TCAAAAGCGCATTAAAGAAT+TGG | - | chr7.4:25663387-25663406 | MS.gene024085:intron | 30.0% |
| !! | ACTATTGTCTTGGGTTTTAT+TGG | + | chr7.4:25662037-25662056 | None:intergenic | 30.0% |
| !!! | AATCAATCATTTTGGAATGG+AGG | - | chr7.4:25664174-25664193 | MS.gene024085:CDS | 30.0% |
| !!! | ATCAATCATTTTGGAATGGA+GGG | - | chr7.4:25664175-25664194 | MS.gene024085:CDS | 30.0% |
| !!! | GATGAGACAAGTTTATTTTG+TGG | - | chr7.4:25662117-25662136 | MS.gene024085:intron | 30.0% |
| AAACTCTTGCTCATCAAATG+TGG | + | chr7.4:25661956-25661975 | None:intergenic | 35.0% | |
| ACTTAATGGCTGAGAGAAAA+AGG | - | chr7.4:25662388-25662407 | MS.gene024085:intron | 35.0% | |
| ATAGGTCAATCATTGTGAGA+AGG | + | chr7.4:25663937-25663956 | None:intergenic | 35.0% | |
| ATTATTATATGCAAGGGTCG+AGG | + | chr7.4:25663801-25663820 | None:intergenic | 35.0% | |
| CAAATCCAGCAATATTCAAG+TGG | - | chr7.4:25663434-25663453 | MS.gene024085:intron | 35.0% | |
| GATTTCCACTTGAATATTGC+TGG | + | chr7.4:25663442-25663461 | None:intergenic | 35.0% | |
| TATAGGGAAAGATGAAGCAA+GGG | - | chr7.4:25662308-25662327 | MS.gene024085:intron | 35.0% | |
| TGAAGCTAGAGTCAAAGAAA+AGG | - | chr7.4:25663510-25663529 | MS.gene024085:intron | 35.0% | |
| TGTAATCAACATTTGTGCTC+AGG | - | chr7.4:25663657-25663676 | MS.gene024085:intron | 35.0% | |
| TTCCAAAGACTTGATTGAGT+TGG | + | chr7.4:25662184-25662203 | None:intergenic | 35.0% | |
| ! | AAGACAATTTTATCTCCCGT+GGG | + | chr7.4:25663850-25663869 | None:intergenic | 35.0% |
| ! | ACCAAAAGATAGAAGGTATG+TGG | + | chr7.4:25662229-25662248 | None:intergenic | 35.0% |
| ! | GATGAATAAGTAAGGTGTCT+AGG | - | chr7.4:25663768-25663787 | MS.gene024085:intron | 35.0% |
| !! | ACAAGAATAGAAGCACCAAA+TGG | + | chr7.4:25663640-25663659 | None:intergenic | 35.0% |
| !! | AGTTGGAGCTATTACTTTTG+TGG | + | chr7.4:25662167-25662186 | None:intergenic | 35.0% |
| !! | TGTGACATTGGTTCAATGAT+TGG | + | chr7.4:25662267-25662286 | None:intergenic | 35.0% |
| AATCTCAAGCAGTGATTGTG+AGG | + | chr7.4:25663491-25663510 | None:intergenic | 40.0% | |
| AGCAGTACCATGTTACCATT+TGG | - | chr7.4:25663622-25663641 | MS.gene024085:intron | 40.0% | |
| CTATAGGGAAAGATGAAGCA+AGG | - | chr7.4:25662307-25662326 | MS.gene024085:intron | 40.0% | |
| CTCCAACTCAATCAAGTCTT+TGG | - | chr7.4:25662179-25662198 | MS.gene024085:intron | 40.0% | |
| GAACATAAGCATCCACATTG+AGG | + | chr7.4:25664218-25664237 | None:intergenic | 40.0% | |
| GACAGTGCAAGATCACTTAA+TGG | - | chr7.4:25662374-25662393 | MS.gene024085:intron | 40.0% | |
| GTCAATCATTGTGAGAAGGA+GGG | + | chr7.4:25663933-25663952 | None:intergenic | 40.0% | |
| ! | AAAGATAGAAGGTATGTGGC+TGG | + | chr7.4:25662225-25662244 | None:intergenic | 40.0% |
| ! | ATTTTCCACAAGGTCATCCA+TGG | + | chr7.4:25664497-25664516 | None:intergenic | 40.0% |
| ! | CATGATACCTGGCTTGAAAA+AGG | - | chr7.4:25662449-25662468 | MS.gene024085:intron | 40.0% |
| ! | GAAGACAATTTTATCTCCCG+TGG | + | chr7.4:25663851-25663870 | None:intergenic | 40.0% |
| ! | GCCACATACCTTCTATCTTT+TGG | - | chr7.4:25662225-25662244 | MS.gene024085:intron | 40.0% |
| ! | TGCTAAAGCTTTGATGCAGA+TGG | - | chr7.4:25664453-25664472 | MS.gene024085:intron | 40.0% |
| !! | ACTAAAAGGAGGGGTACTAT+AGG | - | chr7.4:25662291-25662310 | MS.gene024085:intron | 40.0% |
| !! | AGAAGCACCAAATGGTAACA+TGG | + | chr7.4:25663632-25663651 | None:intergenic | 40.0% |
| !! | CACATGATTCTGGTTCTTCA+AGG | + | chr7.4:25661993-25662012 | None:intergenic | 40.0% |
| !! | CTAAAAGGAGGGGTACTATA+GGG | - | chr7.4:25662292-25662311 | MS.gene024085:intron | 40.0% |
| !!! | AAGCTAACCTTTTTCAAGCC+AGG | + | chr7.4:25662459-25662478 | None:intergenic | 40.0% |
| !!! | CTTTTTCAAGCCAGGTATCA+TGG | + | chr7.4:25662451-25662470 | None:intergenic | 40.0% |
| CTCTTGCTCATCAAATGTGG+TGG | + | chr7.4:25661953-25661972 | None:intergenic | 45.0% | |
| GAAAGATGAAGCAAGGGTGA+AGG | - | chr7.4:25662314-25662333 | MS.gene024085:intron | 45.0% | |
| GAAGAGGGTTCACATGATTC+TGG | + | chr7.4:25662003-25662022 | None:intergenic | 45.0% | |
| GATGGATGAAGAAGACAGCA+TGG | - | chr7.4:25664471-25664490 | MS.gene024085:intron | 45.0% | |
| GGCTGAGAGAAAAAGGAGAA+GGG | - | chr7.4:25662395-25662414 | MS.gene024085:intron | 45.0% | |
| GGTCAATCATTGTGAGAAGG+AGG | + | chr7.4:25663934-25663953 | None:intergenic | 45.0% | |
| GGTGAAGGAAGCAACAAAGA+AGG | - | chr7.4:25662329-25662348 | MS.gene024085:intron | 45.0% | |
| TGGCTGAGAGAAAAAGGAGA+AGG | - | chr7.4:25662394-25662413 | MS.gene024085:intron | 45.0% | |
| TTGCTCATCAAATGTGGTGG+TGG | + | chr7.4:25661950-25661969 | None:intergenic | 45.0% | |
| !!! | ATTTTATATCTAAAAAAAAT+GGG | - | chr7.4:25662617-25662636 | MS.gene024085:intron | 5.0% |
| !!! | TAAATATACTTTTTTAAAAA+TGG | + | chr7.4:25664303-25664322 | None:intergenic | 5.0% |
| !!! | TATTTTATATCTAAAAAAAA+TGG | - | chr7.4:25662616-25662635 | MS.gene024085:intron | 5.0% |
| GCACTTTCAGCCATGATACC+TGG | - | chr7.4:25662438-25662457 | MS.gene024085:intron | 50.0% | |
| TGAAGAAGACAGCATGGCCA+TGG | - | chr7.4:25664477-25664496 | MS.gene024085:intron | 50.0% | |
| TGTCAGCTAAGCAATGCCCA+CGG | - | chr7.4:25663831-25663850 | MS.gene024085:intron | 50.0% | |
| ! | TGGGCATTGCTTAGCTGACA+GGG | + | chr7.4:25663831-25663850 | None:intergenic | 50.0% |
| CATGGCCATGGATGACCTTG+TGG | - | chr7.4:25664489-25664508 | MS.gene024085:intron | 55.0% | |
| GTCAGCTAAGCAATGCCCAC+GGG | - | chr7.4:25663832-25663851 | MS.gene024085:intron | 55.0% | |
| ! | GTGGGCATTGCTTAGCTGAC+AGG | + | chr7.4:25663832-25663851 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 25661782 | 25664558 | 25661782 | ID=MS.gene024085 |
| chr7.4 | mRNA | 25661782 | 25664558 | 25661782 | ID=MS.gene024085.t1;Parent=MS.gene024085 |
| chr7.4 | exon | 25664523 | 25664558 | 25664523 | ID=MS.gene024085.t1.exon1;Parent=MS.gene024085.t1 |
| chr7.4 | CDS | 25664523 | 25664558 | 25664523 | ID=cds.MS.gene024085.t1;Parent=MS.gene024085.t1 |
| chr7.4 | exon | 25663870 | 25664427 | 25663870 | ID=MS.gene024085.t1.exon2;Parent=MS.gene024085.t1 |
| chr7.4 | CDS | 25663870 | 25664427 | 25663870 | ID=cds.MS.gene024085.t1;Parent=MS.gene024085.t1 |
| chr7.4 | exon | 25662662 | 25663003 | 25662662 | ID=MS.gene024085.t1.exon3;Parent=MS.gene024085.t1 |
| chr7.4 | CDS | 25662662 | 25663003 | 25662662 | ID=cds.MS.gene024085.t1;Parent=MS.gene024085.t1 |
| chr7.4 | exon | 25661782 | 25661868 | 25661782 | ID=MS.gene024085.t1.exon4;Parent=MS.gene024085.t1 |
| chr7.4 | CDS | 25661782 | 25661868 | 25661782 | ID=cds.MS.gene024085.t1;Parent=MS.gene024085.t1 |
| Gene Sequence |
| Protein sequence |
