Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024117.t1 | XP_024626779.1 | 86.4 | 361 | 39 | 5 | 1 | 354 | 1 | 358 | 3.30E-101 | 378.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024117.t1 | Q9LJG8 | 35.1 | 94 | 55 | 3 | 43 | 136 | 83 | 170 | 1.5e-09 | 65.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024117.t1 | A2Q1W1 | 85.8 | 353 | 40 | 5 | 1 | 346 | 1 | 350 | 4.7e-97 | 364.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene024117.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024117.t1 | MTR_7g081190 | 94.737 | 323 | 9 | 3 | 37 | 354 | 39 | 358 | 1.39e-158 | 451 |
| MS.gene024117.t1 | MTR_4g117990 | 56.656 | 323 | 84 | 9 | 35 | 342 | 35 | 316 | 3.44e-96 | 290 |
| MS.gene024117.t1 | MTR_5g017500 | 45.926 | 135 | 61 | 4 | 23 | 156 | 8 | 131 | 1.03e-26 | 106 |
| MS.gene024117.t1 | MTR_4g079960 | 35.211 | 142 | 78 | 6 | 15 | 153 | 8 | 138 | 5.97e-13 | 69.3 |
| MS.gene024117.t1 | MTR_4g079960 | 35.211 | 142 | 78 | 6 | 15 | 153 | 8 | 138 | 6.66e-13 | 69.3 |
| MS.gene024117.t1 | MTR_4g079960 | 41.000 | 100 | 48 | 4 | 15 | 111 | 8 | 99 | 1.30e-12 | 68.6 |
| MS.gene024117.t1 | MTR_2g016140 | 27.103 | 107 | 75 | 1 | 32 | 138 | 11 | 114 | 4.72e-11 | 63.9 |
| MS.gene024117.t1 | MTR_2g016140 | 27.103 | 107 | 75 | 1 | 32 | 138 | 11 | 114 | 5.22e-11 | 63.5 |
| MS.gene024117.t1 | MTR_1g061600 | 34.951 | 103 | 59 | 3 | 44 | 146 | 133 | 227 | 6.66e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024117.t1 | AT2G44730 | 46.742 | 353 | 136 | 9 | 26 | 352 | 46 | 372 | 1.43e-80 | 251 |
| MS.gene024117.t1 | AT3G24860 | 27.244 | 312 | 163 | 8 | 29 | 336 | 50 | 301 | 1.36e-25 | 105 |
| MS.gene024117.t1 | AT4G17060 | 58.824 | 68 | 28 | 0 | 278 | 345 | 233 | 300 | 3.85e-18 | 84.7 |
| MS.gene024117.t1 | AT3G14180 | 34.375 | 96 | 57 | 3 | 43 | 138 | 83 | 172 | 8.57e-14 | 72.8 |
| MS.gene024117.t1 | AT3G58630 | 32.374 | 139 | 80 | 4 | 30 | 159 | 15 | 148 | 8.42e-12 | 65.9 |
| MS.gene024117.t1 | AT3G58630 | 32.374 | 139 | 80 | 4 | 30 | 159 | 15 | 148 | 8.64e-12 | 66.2 |
| MS.gene024117.t1 | AT3G10030 | 32.632 | 95 | 57 | 2 | 44 | 138 | 161 | 248 | 1.70e-11 | 66.2 |
| MS.gene024117.t1 | AT3G10030 | 32.632 | 95 | 57 | 2 | 44 | 138 | 161 | 248 | 1.82e-11 | 65.9 |
| MS.gene024117.t1 | AT3G54390 | 33.628 | 113 | 63 | 3 | 38 | 149 | 32 | 133 | 3.56e-11 | 63.9 |
| MS.gene024117.t1 | AT3G54390 | 33.628 | 113 | 63 | 3 | 38 | 149 | 48 | 149 | 3.80e-11 | 63.9 |
Find 110 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGTTGGTGGTGGTGGTGC+TGG | 0.178332 | 7.1:-23704040 | None:intergenic |
| GAAGCGTACCGAGATGATTT+TGG | 0.228571 | 7.1:+23704921 | MS.gene024117:CDS |
| CCGGTGGTGGGTTTCGGATT+AGG | 0.234801 | 7.1:+23704614 | MS.gene024117:CDS |
| CTTCAAAGCTATGGATTCTA+TGG | 0.250239 | 7.1:+23704351 | MS.gene024117:CDS |
| TATGGATATGATTATGATTA+GGG | 0.250658 | 7.1:-23704417 | None:intergenic |
| TGAAATGGTGAATGCTATTA+AGG | 0.263524 | 7.1:+23704813 | MS.gene024117:CDS |
| AAAATGAACAATTCAGAATC+TGG | 0.292564 | 7.1:+23704685 | MS.gene024117:CDS |
| CTATGGATATGATTATGATT+AGG | 0.304409 | 7.1:-23704418 | None:intergenic |
| GTGTTTCACGGTGGTTAATA+AGG | 0.308149 | 7.1:-23704447 | None:intergenic |
| CACGGTGGTTAATAAGGTTA+TGG | 0.312262 | 7.1:-23704441 | None:intergenic |
| AGGTTGGTGGTGGTGGTGCT+GGG | 0.313697 | 7.1:-23704039 | None:intergenic |
| GGTGGTGCTGGGAGGGAAAG+AGG | 0.321617 | 7.1:-23704028 | None:intergenic |
| TCCGTTGGTTCGGGTGGTTT+TGG | 0.326308 | 7.1:+23704586 | MS.gene024117:CDS |
| GTGGTTCCGGTGGTGGGTTT+CGG | 0.326675 | 7.1:+23704608 | MS.gene024117:CDS |
| AGCGCTGCGGGTGGAGGTTC+TGG | 0.329062 | 7.1:+23704517 | MS.gene024117:CDS |
| GCGGGTGGAGGTTCTGGTTC+TGG | 0.338849 | 7.1:+23704523 | MS.gene024117:CDS |
| TTGGTGGTGGTGGTGCTGGG+AGG | 0.341538 | 7.1:-23704036 | None:intergenic |
| GAGGGATGGGTTTGTGAGGA+TGG | 0.342361 | 7.1:+23704840 | MS.gene024117:CDS |
| AATGGAGTTTCCGTTGGTTC+GGG | 0.343762 | 7.1:+23704577 | MS.gene024117:CDS |
| GAATGGAGTTTCCGTTGGTT+CGG | 0.350890 | 7.1:+23704576 | MS.gene024117:CDS |
| CGTTCAGTGTCGTCACAAAA+TGG | 0.351174 | 7.1:+23704240 | MS.gene024117:CDS |
| AGAGAGAGGTTGAGAGAGAA+AGG | 0.363741 | 7.1:+23704773 | MS.gene024117:CDS |
| ATCTGCAACTTCTTGCCAAT+GGG | 0.370295 | 7.1:-23704170 | None:intergenic |
| TCTCAGATCGATAACGTTTA+CGG | 0.384665 | 7.1:-23704270 | None:intergenic |
| GCATTCACCATTTCACCAAT+TGG | 0.387583 | 7.1:-23704805 | None:intergenic |
| TTAGCGACGGGTGAAGCGTT+AGG | 0.398115 | 7.1:-23704211 | None:intergenic |
| TGGTGGTGGTGGTGCTGGGA+GGG | 0.406759 | 7.1:-23704035 | None:intergenic |
| ATCAGAGCAGAAGTTTCTTC+CGG | 0.420804 | 7.1:-23704094 | None:intergenic |
| GTATAGCTTATCAAGACTTC+TGG | 0.422110 | 7.1:-23704551 | None:intergenic |
| ATCTCGTTCTTCTTCTTCGT+GGG | 0.425078 | 7.1:+23704324 | MS.gene024117:CDS |
| GTGGGTTCTCTTCAAAGCTA+TGG | 0.427834 | 7.1:+23704342 | MS.gene024117:CDS |
| CGAGATGAGGTTGGTGGTGG+TGG | 0.430206 | 7.1:-23704046 | None:intergenic |
| TCCGGTGTCCAGCACGGTGG+TGG | 0.436860 | 7.1:-23704076 | None:intergenic |
| GATCTCGTTCTTCTTCTTCG+TGG | 0.446498 | 7.1:+23704323 | MS.gene024117:CDS |
| TTGTGTTGGGGAAGAGAGAG+AGG | 0.447145 | 7.1:+23704749 | MS.gene024117:CDS |
| CGTCGTTATTTAGTGTTTCA+CGG | 0.450882 | 7.1:-23704459 | None:intergenic |
| GCCGTCTTCCACCACCGTGC+TGG | 0.451370 | 7.1:+23704068 | MS.gene024117:CDS |
| AAGAGATCCAATTGGTGAAA+TGG | 0.455113 | 7.1:+23704798 | MS.gene024117:CDS |
| GTGGTGCTGGGAGGGAAAGA+GGG | 0.460638 | 7.1:-23704027 | None:intergenic |
| TGGTGGAACAAGGCTTGTTA+AGG | 0.460822 | 7.1:+23704720 | MS.gene024117:CDS |
| GAAGAACGAGATCTCGGAAC+AGG | 0.461981 | 7.1:-23704313 | None:intergenic |
| TAGCGACGGGTGAAGCGTTA+GGG | 0.470209 | 7.1:-23704210 | None:intergenic |
| GAAGAGAGAGAGGGAGAGAG+AGG | 0.473857 | 7.1:+23704759 | MS.gene024117:CDS |
| CATCTGCAACTTCTTGCCAA+TGG | 0.473979 | 7.1:-23704171 | None:intergenic |
| GGTACGGCTGATGGTGGTGA+TGG | 0.482216 | 7.1:-23704001 | None:intergenic |
| ACCAAAACCACCCGAACCAA+CGG | 0.485996 | 7.1:-23704587 | None:intergenic |
| GGTTAATAAGGTTATGGCTA+TGG | 0.487606 | 7.1:-23704435 | None:intergenic |
| TGATGATGATGATCTTTATG+AGG | 0.488793 | 7.1:+23704486 | MS.gene024117:CDS |
| ATCGATTCTGTTGGAGAAGA+TGG | 0.489057 | 7.1:-23703977 | None:intergenic |
| GTTAAGGAGAGAGTTGTGTT+GGG | 0.490506 | 7.1:+23704736 | MS.gene024117:CDS |
| TGTTAAGGAGAGAGTTGTGT+TGG | 0.492890 | 7.1:+23704735 | MS.gene024117:CDS |
| AGAGATTGAAACTATGAGAA+TGG | 0.499074 | 7.1:+23704888 | MS.gene024117:CDS |
| CTTAGAAGCGCTGCGGGTGG+AGG | 0.504694 | 7.1:+23704511 | MS.gene024117:CDS |
| AAATGAACAATTCAGAATCT+GGG | 0.505187 | 7.1:+23704686 | MS.gene024117:CDS |
| TCTGGTTTATGCGGTGGAGA+AGG | 0.505466 | 7.1:-23704391 | None:intergenic |
| ACAATTCAGAATCTGGGTCT+AGG | 0.507620 | 7.1:+23704692 | MS.gene024117:CDS |
| GAGGATGGAGCAGATGAAGA+TGG | 0.514066 | 7.1:+23704855 | MS.gene024117:CDS |
| TACCGGAATGGAGTTTCCGT+TGG | 0.514253 | 7.1:+23704571 | MS.gene024117:CDS |
| TGCGCCACGCTTACACCCGT+TGG | 0.515491 | 7.1:-23704640 | None:intergenic |
| AACCAACGGAAACTCCATTC+CGG | 0.515612 | 7.1:-23704573 | None:intergenic |
| AGAGGGAGAGGTACGGCTGA+TGG | 0.518443 | 7.1:-23704010 | None:intergenic |
| GAATCTGGGTCTAGGATCAA+TGG | 0.522025 | 7.1:+23704700 | MS.gene024117:CDS |
| GAGAGAGGTTGAGAGAGAAA+GGG | 0.525048 | 7.1:+23704774 | MS.gene024117:CDS |
| GGAGTTTCCGTTGGTTCGGG+TGG | 0.526803 | 7.1:+23704580 | MS.gene024117:CDS |
| TCCACCACCGTGCTGGACAC+CGG | 0.527476 | 7.1:+23704075 | MS.gene024117:CDS |
| GAGGAACTTAGAAGCGCTGC+GGG | 0.530673 | 7.1:+23704505 | MS.gene024117:CDS |
| TCCAGCACGGTGGTGGAAGA+CGG | 0.531155 | 7.1:-23704069 | None:intergenic |
| TGAAACTATGAGAATGGAGA+TGG | 0.531817 | 7.1:+23704894 | MS.gene024117:CDS |
| GAAAGGGAAAGAGATCCAAT+TGG | 0.539477 | 7.1:+23704790 | MS.gene024117:CDS |
| GAAGTCTTGATAAGCTATAC+CGG | 0.544701 | 7.1:+23704554 | MS.gene024117:CDS |
| GCTGGGAGGGAAAGAGGGAG+AGG | 0.546456 | 7.1:-23704022 | None:intergenic |
| CGGCGAGATGAGGTTGGTGG+TGG | 0.548164 | 7.1:-23704049 | None:intergenic |
| GTTTCGGATTAGGATTCCAA+CGG | 0.549612 | 7.1:+23704624 | MS.gene024117:CDS |
| GCTATGGATTCTATGGAGAA+AGG | 0.554265 | 7.1:+23704358 | MS.gene024117:CDS |
| TGGATTTATCTACGATTCTG+AGG | 0.555611 | 7.1:-23705094 | None:intergenic |
| TTAAGGAGAGAGTTGTGTTG+GGG | 0.559890 | 7.1:+23704737 | MS.gene024117:CDS |
| TTTCGGATTAGGATTCCAAC+GGG | 0.561959 | 7.1:+23704625 | MS.gene024117:CDS |
| GAAGAAGAAGAACGAGATCT+CGG | 0.565455 | 7.1:-23704319 | None:intergenic |
| TGCGGTGGAGAAGGAGGAGA+AGG | 0.574396 | 7.1:-23704382 | None:intergenic |
| CAAATCTCAAAGCAACCCAT+TGG | 0.579861 | 7.1:+23704155 | MS.gene024117:CDS |
| GAGGGAAAGAGGGAGAGGTA+CGG | 0.580802 | 7.1:-23704017 | None:intergenic |
| GGTGTAAGCGTGGCGCAACC+CGG | 0.584893 | 7.1:+23704646 | MS.gene024117:CDS |
| CTTGATAAGCTATACCGGAA+TGG | 0.585220 | 7.1:+23704559 | MS.gene024117:CDS |
| CTAGGATCAATGGTGGAACA+AGG | 0.587512 | 7.1:+23704710 | MS.gene024117:CDS |
| GTACGGCTGATGGTGGTGAT+GGG | 0.588413 | 7.1:-23704000 | None:intergenic |
| CTGAGACTCCAAAATCATCT+CGG | 0.592543 | 7.1:-23704929 | None:intergenic |
| GGTTTATGCGGTGGAGAAGG+AGG | 0.594549 | 7.1:-23704388 | None:intergenic |
| TGTGTTGGGGAAGAGAGAGA+GGG | 0.597007 | 7.1:+23704750 | MS.gene024117:CDS |
| GGATTTATCTACGATTCTGA+GGG | 0.599119 | 7.1:-23705093 | None:intergenic |
| TTTCGGAGAAGAACAAGAAG+AGG | 0.600983 | 7.1:+23704983 | MS.gene024117:CDS |
| TGGTGGAAGACGGCGAGATG+AGG | 0.605549 | 7.1:-23704059 | None:intergenic |
| CCTAATCCGAAACCCACCAC+CGG | 0.609435 | 7.1:-23704614 | None:intergenic |
| GTTTCTTCCGGTGTCCAGCA+CGG | 0.611210 | 7.1:-23704082 | None:intergenic |
| GAACTTAGAAGCGCTGCGGG+TGG | 0.611346 | 7.1:+23704508 | MS.gene024117:CDS |
| GGAAGACGGCGAGATGAGGT+TGG | 0.615913 | 7.1:-23704055 | None:intergenic |
| GGAGCAGATGAAGATGGAGA+TGG | 0.621074 | 7.1:+23704861 | MS.gene024117:CDS |
| GATTCCAACGGGTGTAAGCG+TGG | 0.625455 | 7.1:+23704636 | MS.gene024117:CDS |
| AGACGGCGAGATGAGGTTGG+TGG | 0.626962 | 7.1:-23704052 | None:intergenic |
| TGGTGGTGGTGATGTTGCCA+TGG | 0.630730 | 7.1:-23703957 | None:intergenic |
| CAAGAAGAGGAAACTACGCA+AGG | 0.633025 | 7.1:+23704996 | MS.gene024117:CDS |
| GGGAGAGGTACGGCTGATGG+TGG | 0.634889 | 7.1:-23704007 | None:intergenic |
| GGTGATGGGATCGATTCTGT+TGG | 0.635621 | 7.1:-23703986 | None:intergenic |
| GTTAGGGCAACGAACAGCGA+CGG | 0.651606 | 7.1:-23704194 | None:intergenic |
| TGAGGAACTTAGAAGCGCTG+CGG | 0.656102 | 7.1:+23704504 | MS.gene024117:CDS |
| TCTGGGTCTAGGATCAATGG+TGG | 0.665360 | 7.1:+23704703 | MS.gene024117:CDS |
| TCTGTTGGAGAAGATGGTGG+TGG | 0.666197 | 7.1:-23703971 | None:intergenic |
| AAGAAGAGGAAACTACGCAA+GGG | 0.675959 | 7.1:+23704997 | MS.gene024117:CDS |
| TCTTCCGGTGTCCAGCACGG+TGG | 0.693283 | 7.1:-23704079 | None:intergenic |
| GATTCTGTTGGAGAAGATGG+TGG | 0.716177 | 7.1:-23703974 | None:intergenic |
| CGTTATTTAGTGTTTCACGG+TGG | 0.748281 | 7.1:-23704456 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGGATATGATTATGATTA+GGG | - | chr7.1:23704420-23704439 | None:intergenic | 20.0% |
| ! | AAAATGAACAATTCAGAATC+TGG | + | chr7.1:23704685-23704704 | MS.gene024117:CDS | 25.0% |
| ! | AAATGAACAATTCAGAATCT+GGG | + | chr7.1:23704686-23704705 | MS.gene024117:CDS | 25.0% |
| ! | CTATGGATATGATTATGATT+AGG | - | chr7.1:23704421-23704440 | None:intergenic | 25.0% |
| !! | GATTCTGAATTGTTCATTTT+TGG | - | chr7.1:23704685-23704704 | None:intergenic | 25.0% |
| !!! | TTTTGGATAGAATTTTGATC+CGG | - | chr7.1:23704668-23704687 | None:intergenic | 25.0% |
| AGAGATTGAAACTATGAGAA+TGG | + | chr7.1:23704888-23704907 | MS.gene024117:CDS | 30.0% | |
| TGAAATGGTGAATGCTATTA+AGG | + | chr7.1:23704813-23704832 | MS.gene024117:CDS | 30.0% | |
| ! | TGAATGCTATTAAGGTTTTG+AGG | + | chr7.1:23704821-23704840 | MS.gene024117:CDS | 30.0% |
| ! | TGATGATGATGATCTTTATG+AGG | + | chr7.1:23704486-23704505 | MS.gene024117:CDS | 30.0% |
| ! | TGATTATGATTAGGGTTTTC+TGG | - | chr7.1:23704412-23704431 | None:intergenic | 30.0% |
| !! | GAATGCTATTAAGGTTTTGA+GGG | + | chr7.1:23704822-23704841 | MS.gene024117:CDS | 30.0% |
| !! | TTTGGATAGAATTTTGATCC+GGG | - | chr7.1:23704667-23704686 | None:intergenic | 30.0% |
| AAGAGATCCAATTGGTGAAA+TGG | + | chr7.1:23704798-23704817 | MS.gene024117:CDS | 35.0% | |
| CGTCGTTATTTAGTGTTTCA+CGG | - | chr7.1:23704462-23704481 | None:intergenic | 35.0% | |
| CTTCAAAGCTATGGATTCTA+TGG | + | chr7.1:23704351-23704370 | MS.gene024117:CDS | 35.0% | |
| GAAGTCTTGATAAGCTATAC+CGG | + | chr7.1:23704554-23704573 | MS.gene024117:CDS | 35.0% | |
| GGTTAATAAGGTTATGGCTA+TGG | - | chr7.1:23704438-23704457 | None:intergenic | 35.0% | |
| GTATAGCTTATCAAGACTTC+TGG | - | chr7.1:23704554-23704573 | None:intergenic | 35.0% | |
| TCTCAGATCGATAACGTTTA+CGG | - | chr7.1:23704273-23704292 | None:intergenic | 35.0% | |
| TGAAACTATGAGAATGGAGA+TGG | + | chr7.1:23704894-23704913 | MS.gene024117:CDS | 35.0% | |
| !!! | CTATTAAGGTTTTGAGGGAT+GGG | + | chr7.1:23704827-23704846 | MS.gene024117:CDS | 35.0% |
| !!! | TTAGGGTTTTCTGGTTTATG+CGG | - | chr7.1:23704403-23704422 | None:intergenic | 35.0% |
| AAGAAGAGGAAACTACGCAA+GGG | + | chr7.1:23704997-23705016 | MS.gene024117:CDS | 40.0% | |
| ACAATTCAGAATCTGGGTCT+AGG | + | chr7.1:23704692-23704711 | MS.gene024117:CDS | 40.0% | |
| ATCAGAGCAGAAGTTTCTTC+CGG | - | chr7.1:23704097-23704116 | None:intergenic | 40.0% | |
| ATCTCGTTCTTCTTCTTCGT+GGG | + | chr7.1:23704324-23704343 | MS.gene024117:CDS | 40.0% | |
| ATCTGCAACTTCTTGCCAAT+GGG | - | chr7.1:23704173-23704192 | None:intergenic | 40.0% | |
| CAAATCTCAAAGCAACCCAT+TGG | + | chr7.1:23704155-23704174 | MS.gene024117:CDS | 40.0% | |
| CACGGTGGTTAATAAGGTTA+TGG | - | chr7.1:23704444-23704463 | None:intergenic | 40.0% | |
| CGTTATTTAGTGTTTCACGG+TGG | - | chr7.1:23704459-23704478 | None:intergenic | 40.0% | |
| CTGAGACTCCAAAATCATCT+CGG | - | chr7.1:23704932-23704951 | None:intergenic | 40.0% | |
| CTTGATAAGCTATACCGGAA+TGG | + | chr7.1:23704559-23704578 | MS.gene024117:CDS | 40.0% | |
| GAAAGGGAAAGAGATCCAAT+TGG | + | chr7.1:23704790-23704809 | MS.gene024117:CDS | 40.0% | |
| GAAGAAGAAGAACGAGATCT+CGG | - | chr7.1:23704322-23704341 | None:intergenic | 40.0% | |
| GCATTCACCATTTCACCAAT+TGG | - | chr7.1:23704808-23704827 | None:intergenic | 40.0% | |
| GCTATGGATTCTATGGAGAA+AGG | + | chr7.1:23704358-23704377 | MS.gene024117:CDS | 40.0% | |
| GTGTTTCACGGTGGTTAATA+AGG | - | chr7.1:23704450-23704469 | None:intergenic | 40.0% | |
| GTTAAGGAGAGAGTTGTGTT+GGG | + | chr7.1:23704736-23704755 | MS.gene024117:CDS | 40.0% | |
| TGTTAAGGAGAGAGTTGTGT+TGG | + | chr7.1:23704735-23704754 | MS.gene024117:CDS | 40.0% | |
| TTAAGGAGAGAGTTGTGTTG+GGG | + | chr7.1:23704737-23704756 | MS.gene024117:CDS | 40.0% | |
| TTTCGGAGAAGAACAAGAAG+AGG | + | chr7.1:23704983-23705002 | MS.gene024117:CDS | 40.0% | |
| ! | AGCTTTTGCGAAAGCTGTTT+CGG | + | chr7.1:23704966-23704985 | MS.gene024117:CDS | 40.0% |
| ! | ATCGATTCTGTTGGAGAAGA+TGG | - | chr7.1:23703980-23703999 | None:intergenic | 40.0% |
| ! | CATTTTGTGACGACACTGAA+CGG | - | chr7.1:23704242-23704261 | None:intergenic | 40.0% |
| ! | GTTTCGGATTAGGATTCCAA+CGG | + | chr7.1:23704624-23704643 | MS.gene024117:CDS | 40.0% |
| ! | TTTCGGATTAGGATTCCAAC+GGG | + | chr7.1:23704625-23704644 | MS.gene024117:CDS | 40.0% |
| !!! | GCTATTAAGGTTTTGAGGGA+TGG | + | chr7.1:23704826-23704845 | MS.gene024117:CDS | 40.0% |
| AACCAACGGAAACTCCATTC+CGG | - | chr7.1:23704576-23704595 | None:intergenic | 45.0% | |
| AGAGAGAGGTTGAGAGAGAA+AGG | + | chr7.1:23704773-23704792 | MS.gene024117:CDS | 45.0% | |
| CAAGAAGAGGAAACTACGCA+AGG | + | chr7.1:23704996-23705015 | MS.gene024117:CDS | 45.0% | |
| CATCTGCAACTTCTTGCCAA+TGG | - | chr7.1:23704174-23704193 | None:intergenic | 45.0% | |
| CGCGAAAAATGGTACTCTCT+CGG | + | chr7.1:23704127-23704146 | MS.gene024117:CDS | 45.0% | |
| CGTTCAGTGTCGTCACAAAA+TGG | + | chr7.1:23704240-23704259 | MS.gene024117:CDS | 45.0% | |
| GAGAGAGGTTGAGAGAGAAA+GGG | + | chr7.1:23704774-23704793 | MS.gene024117:CDS | 45.0% | |
| GATCTCGTTCTTCTTCTTCG+TGG | + | chr7.1:23704323-23704342 | MS.gene024117:CDS | 45.0% | |
| GATTCTGTTGGAGAAGATGG+TGG | - | chr7.1:23703977-23703996 | None:intergenic | 45.0% | |
| GTGGGTTCTCTTCAAAGCTA+TGG | + | chr7.1:23704342-23704361 | MS.gene024117:CDS | 45.0% | |
| TCGATTCCTACCGCGAAAAA+TGG | + | chr7.1:23704116-23704135 | MS.gene024117:CDS | 45.0% | |
| ! | CTAGGATCAATGGTGGAACA+AGG | + | chr7.1:23704710-23704729 | MS.gene024117:CDS | 45.0% |
| ! | GAAGCGTACCGAGATGATTT+TGG | + | chr7.1:23704921-23704940 | MS.gene024117:CDS | 45.0% |
| ! | GAATCTGGGTCTAGGATCAA+TGG | + | chr7.1:23704700-23704719 | MS.gene024117:CDS | 45.0% |
| ! | GAATGGAGTTTCCGTTGGTT+CGG | + | chr7.1:23704576-23704595 | MS.gene024117:CDS | 45.0% |
| !! | AATGGAGTTTCCGTTGGTTC+GGG | + | chr7.1:23704577-23704596 | MS.gene024117:CDS | 45.0% |
| !! | AGAGTACCATTTTTCGCGGT+AGG | - | chr7.1:23704125-23704144 | None:intergenic | 45.0% |
| !! | TGGTGGAACAAGGCTTGTTA+AGG | + | chr7.1:23704720-23704739 | MS.gene024117:CDS | 45.0% |
| !! | TTTTGAGGGATGGGTTTGTG+AGG | + | chr7.1:23704836-23704855 | MS.gene024117:CDS | 45.0% |
| !!! | CGAGAGAGTACCATTTTTCG+CGG | - | chr7.1:23704129-23704148 | None:intergenic | 45.0% |
| !!! | TGATTTTGGAGTCTCAGCAG+AGG | + | chr7.1:23704935-23704954 | MS.gene024117:CDS | 45.0% |
| ACCAAAACCACCCGAACCAA+CGG | - | chr7.1:23704590-23704609 | None:intergenic | 50.0% | |
| GAAGAACGAGATCTCGGAAC+AGG | - | chr7.1:23704316-23704335 | None:intergenic | 50.0% | |
| GAGGATGGAGCAGATGAAGA+TGG | + | chr7.1:23704855-23704874 | MS.gene024117:CDS | 50.0% | |
| GGAGCAGATGAAGATGGAGA+TGG | + | chr7.1:23704861-23704880 | MS.gene024117:CDS | 50.0% | |
| TACCGGAATGGAGTTTCCGT+TGG | + | chr7.1:23704571-23704590 | MS.gene024117:CDS | 50.0% | |
| TGTGTTGGGGAAGAGAGAGA+GGG | + | chr7.1:23704750-23704769 | MS.gene024117:CDS | 50.0% | |
| TTGTGTTGGGGAAGAGAGAG+AGG | + | chr7.1:23704749-23704768 | MS.gene024117:CDS | 50.0% | |
| ! | TCTGGGTCTAGGATCAATGG+TGG | + | chr7.1:23704703-23704722 | MS.gene024117:CDS | 50.0% |
| ! | TCTGGTTTATGCGGTGGAGA+AGG | - | chr7.1:23704394-23704413 | None:intergenic | 50.0% |
| ! | TCTGTTGGAGAAGATGGTGG+TGG | - | chr7.1:23703974-23703993 | None:intergenic | 50.0% |
| !! | CTGAACGGCAGTTTTAGCGA+CGG | - | chr7.1:23704227-23704246 | None:intergenic | 50.0% |
| !! | GGTGATGGGATCGATTCTGT+TGG | - | chr7.1:23703989-23704008 | None:intergenic | 50.0% |
| !! | TGAACGGCAGTTTTAGCGAC+GGG | - | chr7.1:23704226-23704245 | None:intergenic | 50.0% |
| !! | TGAGGAACTTAGAAGCGCTG+CGG | + | chr7.1:23704504-23704523 | MS.gene024117:CDS | 50.0% |
| !!! | GGGTTTTCTGGTTTATGCGG+TGG | - | chr7.1:23704400-23704419 | None:intergenic | 50.0% |
| CCTAATCCGAAACCCACCAC+CGG | - | chr7.1:23704617-23704636 | None:intergenic | 55.0% | |
| GAAGAGAGAGAGGGAGAGAG+AGG | + | chr7.1:23704759-23704778 | MS.gene024117:CDS | 55.0% | |
| GAGGGAAAGAGGGAGAGGTA+CGG | - | chr7.1:23704020-23704039 | None:intergenic | 55.0% | |
| GATTCCAACGGGTGTAAGCG+TGG | + | chr7.1:23704636-23704655 | MS.gene024117:CDS | 55.0% | |
| GGTTTATGCGGTGGAGAAGG+AGG | - | chr7.1:23704391-23704410 | None:intergenic | 55.0% | |
| GTTAGGGCAACGAACAGCGA+CGG | - | chr7.1:23704197-23704216 | None:intergenic | 55.0% | |
| GTTTCTTCCGGTGTCCAGCA+CGG | - | chr7.1:23704085-23704104 | None:intergenic | 55.0% | |
| ! | GAGGGATGGGTTTGTGAGGA+TGG | + | chr7.1:23704840-23704859 | MS.gene024117:CDS | 55.0% |
| ! | TAGCGACGGGTGAAGCGTTA+GGG | - | chr7.1:23704213-23704232 | None:intergenic | 55.0% |
| ! | TTAGCGACGGGTGAAGCGTT+AGG | - | chr7.1:23704214-23704233 | None:intergenic | 55.0% |
| !! | GAGGAACTTAGAAGCGCTGC+GGG | + | chr7.1:23704505-23704524 | MS.gene024117:CDS | 55.0% |
| !! | GTACGGCTGATGGTGGTGAT+GGG | - | chr7.1:23704003-23704022 | None:intergenic | 55.0% |
| !! | GTTTTGGTGGTTCCGGTGGT+GGG | + | chr7.1:23704602-23704621 | MS.gene024117:CDS | 55.0% |
| !!! | GTTGGTTCGGGTGGTTTTGG+TGG | + | chr7.1:23704589-23704608 | MS.gene024117:CDS | 55.0% |
| !!! | TCCGTTGGTTCGGGTGGTTT+TGG | + | chr7.1:23704586-23704605 | MS.gene024117:CDS | 55.0% |
| !!! | TCGGGTGGTTTTGGTGGTTC+CGG | + | chr7.1:23704595-23704614 | MS.gene024117:CDS | 55.0% |
| AGACGGCGAGATGAGGTTGG+TGG | - | chr7.1:23704055-23704074 | None:intergenic | 60.0% | |
| GGAAGACGGCGAGATGAGGT+TGG | - | chr7.1:23704058-23704077 | None:intergenic | 60.0% | |
| TGCGGTGGAGAAGGAGGAGA+AGG | - | chr7.1:23704385-23704404 | None:intergenic | 60.0% | |
| TGGTGGAAGACGGCGAGATG+AGG | - | chr7.1:23704062-23704081 | None:intergenic | 60.0% | |
| ! | AGAGGGAGAGGTACGGCTGA+TGG | - | chr7.1:23704013-23704032 | None:intergenic | 60.0% |
| ! | GTGGTGCTGGGAGGGAAAGA+GGG | - | chr7.1:23704030-23704049 | None:intergenic | 60.0% |
| !! | AGGTTGGTGGTGGTGGTGCT+GGG | - | chr7.1:23704042-23704061 | None:intergenic | 60.0% |
| !! | CCGGTGGTGGGTTTCGGATT+AGG | + | chr7.1:23704614-23704633 | MS.gene024117:CDS | 60.0% |
| !! | CGAGATGAGGTTGGTGGTGG+TGG | - | chr7.1:23704049-23704068 | None:intergenic | 60.0% |
| !! | GAACTTAGAAGCGCTGCGGG+TGG | + | chr7.1:23704508-23704527 | MS.gene024117:CDS | 60.0% |
| !! | GGAGTTTCCGTTGGTTCGGG+TGG | + | chr7.1:23704580-23704599 | MS.gene024117:CDS | 60.0% |
| !! | GGTACGGCTGATGGTGGTGA+TGG | - | chr7.1:23704004-23704023 | None:intergenic | 60.0% |
| !! | GGTTTTGGTGGTTCCGGTGG+TGG | + | chr7.1:23704601-23704620 | MS.gene024117:CDS | 60.0% |
| !! | GTGGTTCCGGTGGTGGGTTT+CGG | + | chr7.1:23704608-23704627 | MS.gene024117:CDS | 60.0% |
| !! | TCCAGCACGGTGGTGGAAGA+CGG | - | chr7.1:23704072-23704091 | None:intergenic | 60.0% |
| !!! | GGTGGTTTTGGTGGTTCCGG+TGG | + | chr7.1:23704598-23704617 | MS.gene024117:CDS | 60.0% |
| GCTGGGAGGGAAAGAGGGAG+AGG | - | chr7.1:23704025-23704044 | None:intergenic | 65.0% | |
| GGTGTAAGCGTGGCGCAACC+CGG | + | chr7.1:23704646-23704665 | MS.gene024117:CDS | 65.0% | |
| TCCACCACCGTGCTGGACAC+CGG | + | chr7.1:23704075-23704094 | MS.gene024117:CDS | 65.0% | |
| TCTTCCGGTGTCCAGCACGG+TGG | - | chr7.1:23704082-23704101 | None:intergenic | 65.0% | |
| TGCGCCACGCTTACACCCGT+TGG | - | chr7.1:23704643-23704662 | None:intergenic | 65.0% | |
| ! | GGGAGAGGTACGGCTGATGG+TGG | - | chr7.1:23704010-23704029 | None:intergenic | 65.0% |
| ! | GGTGGTGCTGGGAGGGAAAG+AGG | - | chr7.1:23704031-23704050 | None:intergenic | 65.0% |
| !! | CGGCGAGATGAGGTTGGTGG+TGG | - | chr7.1:23704052-23704071 | None:intergenic | 65.0% |
| !! | CTTAGAAGCGCTGCGGGTGG+AGG | + | chr7.1:23704511-23704530 | MS.gene024117:CDS | 65.0% |
| !! | GAGGTTGGTGGTGGTGGTGC+TGG | - | chr7.1:23704043-23704062 | None:intergenic | 65.0% |
| !! | GCGGGTGGAGGTTCTGGTTC+TGG | + | chr7.1:23704523-23704542 | MS.gene024117:CDS | 65.0% |
| !! | TGGTGGTGGTGGTGCTGGGA+GGG | - | chr7.1:23704038-23704057 | None:intergenic | 65.0% |
| !! | TTGGTGGTGGTGGTGCTGGG+AGG | - | chr7.1:23704039-23704058 | None:intergenic | 65.0% |
| AGCGCTGCGGGTGGAGGTTC+TGG | + | chr7.1:23704517-23704536 | MS.gene024117:CDS | 70.0% | |
| GCCGTCTTCCACCACCGTGC+TGG | + | chr7.1:23704068-23704087 | MS.gene024117:CDS | 70.0% | |
| TCCGGTGTCCAGCACGGTGG+TGG | - | chr7.1:23704079-23704098 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 23703959 | 23705107 | 23703959 | ID=MS.gene024117 |
| chr7.1 | mRNA | 23703959 | 23705107 | 23703959 | ID=MS.gene024117.t1;Parent=MS.gene024117 |
| chr7.1 | exon | 23703959 | 23705107 | 23703959 | ID=MS.gene024117.t1.exon1;Parent=MS.gene024117.t1 |
| chr7.1 | CDS | 23703959 | 23705107 | 23703959 | ID=cds.MS.gene024117.t1;Parent=MS.gene024117.t1 |
| Gene Sequence |
| Protein sequence |
