AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024127

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024127.t1 MTR_7g081270 96.127 284 11 0 1 284 1 284 0.0 532
MS.gene024127.t1 MTR_2g049780 42.991 214 118 4 67 279 94 304 2.66e-46 158
MS.gene024127.t1 MTR_2g067230 32.852 277 169 8 6 279 37 299 2.50e-35 129
MS.gene024127.t1 MTR_5g041630 33.708 267 150 8 19 277 43 290 2.43e-31 119
MS.gene024127.t1 MTR_6g003960 26.636 214 110 4 75 283 420 591 7.62e-19 86.7
MS.gene024127.t1 MTR_2g034600 31.553 206 127 7 78 279 348 543 2.67e-16 79.0
MS.gene024127.t1 MTR_2g034600 31.553 206 127 7 78 279 287 482 2.84e-16 79.0
MS.gene024127.t1 MTR_2g034600 31.553 206 127 7 78 279 352 547 2.89e-16 79.0
MS.gene024127.t1 MTR_4g084630 29.032 217 134 5 77 283 116 322 2.06e-15 75.5
MS.gene024127.t1 MTR_5g094610 26.484 219 151 6 72 283 260 475 5.20e-15 75.1
MS.gene024127.t1 MTR_4g070060 27.184 206 143 5 77 279 384 585 1.33e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024127.t1 AT3G18870 55.422 249 107 3 36 284 29 273 6.61e-96 283
MS.gene024127.t1 AT2G03050 36.667 240 146 5 43 279 33 269 8.41e-44 150
MS.gene024127.t1 AT2G03050 36.667 240 146 5 43 279 32 268 8.47e-44 150
MS.gene024127.t1 AT2G34620 39.524 210 123 4 71 279 84 290 2.80e-43 150
MS.gene024127.t1 AT2G36000 34.440 241 146 8 44 279 74 307 3.41e-31 119
MS.gene024127.t1 AT2G36000 34.440 241 146 8 44 279 74 307 3.82e-31 118
MS.gene024127.t1 AT1G78930 27.358 212 117 3 72 283 404 578 2.41e-17 82.4
MS.gene024127.t1 AT5G55580 27.854 219 148 7 72 283 253 468 6.78e-16 77.8
MS.gene024127.t1 AT5G55580 27.854 219 148 7 72 283 147 362 9.36e-16 77.0
MS.gene024127.t1 AT4G14605 27.404 208 110 5 72 279 301 467 5.62e-15 75.1
MS.gene024127.t1 AT4G14605 27.404 208 110 5 72 279 301 467 5.62e-15 75.1
MS.gene024127.t1 AT4G38160 28.037 214 141 6 77 283 117 324 9.19e-15 73.6
MS.gene024127.t1 AT4G38160 28.037 214 141 6 77 283 117 324 9.19e-15 73.6
MS.gene024127.t1 AT4G38160 28.037 214 141 6 77 283 117 324 1.07e-14 73.9
MS.gene024127.t1 AT4G38160 28.037 214 141 6 77 283 117 324 1.45e-14 73.6
MS.gene024127.t1 AT2G21710 26.860 242 132 5 78 279 356 592 1.70e-13 70.9

Find 107 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAGGTTGCCGGCGATAT+TGG 0.211818 7.1:+23573602 MS.gene024127:CDS
GCAAGGTTGCCGGCGATATT+GGG 0.271051 7.1:+23573603 MS.gene024127:CDS
TCCTGTTAGTTGGCCTGTTC+AGG 0.273978 7.1:-23573479 None:intergenic
GTGGCCGAAGTTTGTGTATT+TGG 0.292279 7.1:+23573647 MS.gene024127:CDS
GGAGGGTTGGTTTGAGGATG+TGG 0.308413 7.1:-23573425 None:intergenic
GGAGAGGGAGGTAGGGGAAA+TGG 0.315974 7.1:-23573304 None:intergenic
TCAAGGTGAGGTAGGTTGTT+TGG 0.324999 7.1:-23573174 None:intergenic
TTTGGCGTTGGTGGAAAGAT+TGG 0.342499 7.1:-23573002 None:intergenic
TTGATGTAACCGTTTCTGTT+AGG 0.373078 7.1:-23573081 None:intergenic
ACCTGAACAGGCCAACTAAC+AGG 0.386362 7.1:+23573478 MS.gene024127:CDS
GAGGATAAGAAGATGGAGTT+TGG 0.390964 7.1:-23573020 None:intergenic
GAATGTTTGTGCAAGGTTGC+CGG 0.395975 7.1:+23573593 MS.gene024127:CDS
GGGACAATGGTGGACTAGCC+GGG 0.397061 7.1:-23573265 None:intergenic
ACGTCGGTGAAGAGGAGGTT+AGG 0.409537 7.1:-23573399 None:intergenic
ATTTGAAAGAAAGAGGTGTT+AGG 0.409873 7.1:+23573763 MS.gene024127:CDS
GGAGGTAGGGGAAATGGAGG+TGG 0.413210 7.1:-23573298 None:intergenic
GAAAGAGATGGAGAGGGAGG+TGG 0.414641 7.1:+23573671 MS.gene024127:CDS
GAGGGAGGTAGGGGAAATGG+AGG 0.418156 7.1:-23573301 None:intergenic
GGAAGTGGAGGGTTGGTTTG+AGG 0.419169 7.1:-23573431 None:intergenic
ATGGAGGTGGTGAAGAGGTT+GGG 0.419906 7.1:-23573285 None:intergenic
AAGATGGAGTTTGGCGTTGG+TGG 0.422753 7.1:-23573011 None:intergenic
AGGTTTCTTGAGGAAGTGGT+TGG 0.427900 7.1:+23573549 MS.gene024127:CDS
AATGGAGGTGGTGAAGAGGT+TGG 0.433095 7.1:-23573286 None:intergenic
TGGGACAATGGTGGACTAGC+CGG 0.434927 7.1:-23573266 None:intergenic
TCTTTCAAATGCAAATGCCT+TGG 0.434972 7.1:-23573750 None:intergenic
TGAGAGGGAGGATAAGAAGA+TGG 0.437100 7.1:-23573027 None:intergenic
GGTTAGGGCAACGGAGGATA+AGG 0.439054 7.1:-23573383 None:intergenic
CAACTTCCTCGCGGAGGAAG+TGG 0.444919 7.1:-23573446 None:intergenic
CACTTCCTCCGCGAGGAAGT+TGG 0.448220 7.1:+23573447 MS.gene024127:CDS
TTGGAGTTAGTAACCTGAAC+AGG 0.454578 7.1:+23573466 MS.gene024127:CDS
AACCGTTTCTGTTAGGATAA+CGG 0.454941 7.1:-23573074 None:intergenic
CATTTGCATTTGAAAGAAAG+AGG 0.462822 7.1:+23573756 MS.gene024127:CDS
GAGGCGAGGAAGGTGAAGAC+GGG 0.462849 7.1:-23573327 None:intergenic
GGTTTCTTGAGGAAGTGGTT+GGG 0.466379 7.1:+23573550 MS.gene024127:CDS
GATGGTGAGGATGTGGTTGA+TGG 0.467160 7.1:-23573199 None:intergenic
GTTGAGGTTTCTTGAGGAAG+TGG 0.478350 7.1:+23573545 MS.gene024127:CDS
CGGTGAAAGAGTGGGATTTG+AGG 0.484295 7.1:-23573230 None:intergenic
TGGTGAAGAGGTTGGGACAA+TGG 0.486305 7.1:-23573278 None:intergenic
GGCGTTGGTGGAAAGATTGG+AGG 0.493018 7.1:-23572999 None:intergenic
TATAGAGTTTGATGATTGAG+AGG 0.494375 7.1:-23573043 None:intergenic
AGAAGATGCGCATGAGGTTG+AGG 0.495323 7.1:+23573529 MS.gene024127:CDS
GAGTTTGATGATTGAGAGGG+AGG 0.502670 7.1:-23573039 None:intergenic
GAGGAGGTCGGAGGCGAGGA+AGG 0.505171 7.1:-23573337 None:intergenic
TTGGGTTTAGTTTGGAGAAG+AGG 0.509649 7.1:+23573721 MS.gene024127:CDS
GGAGGCGAGGAAGGTGAAGA+CGG 0.509867 7.1:-23573328 None:intergenic
AACCGTTATCCTAACAGAAA+CGG 0.513485 7.1:+23573072 MS.gene024127:CDS
AAGAAGATGGAGTTTGGCGT+TGG 0.515595 7.1:-23573014 None:intergenic
TGATGGTGTCAAGGTGAGGT+AGG 0.516204 7.1:-23573182 None:intergenic
TCACCGAGGCCGACATCCCC+CGG 0.518020 7.1:+23573247 MS.gene024127:CDS
TGGCGAGGAGGTCGGAGGCG+AGG 0.519629 7.1:-23573341 None:intergenic
TTCACCAAATACACAAACTT+CGG 0.521850 7.1:-23573651 None:intergenic
AGATGCGCGTTCCTGTTAGT+TGG 0.527130 7.1:-23573489 None:intergenic
CGTCGGTGAAGAGGAGGTTA+GGG 0.540321 7.1:-23573398 None:intergenic
ATTTGGTGAAAGAGATGGAG+AGG 0.546039 7.1:+23573664 MS.gene024127:CDS
CACATCAACATTCTATTCAA+AGG 0.546735 7.1:-23573789 None:intergenic
TTTCTGTTAGGATAACGGTT+AGG 0.548102 7.1:-23573069 None:intergenic
TCGCGGAGGAAGTGGAGGGT+TGG 0.548697 7.1:-23573438 None:intergenic
GGTGAAAGAGATGGAGAGGG+AGG 0.550774 7.1:+23573668 MS.gene024127:CDS
ATAGAGTTTGATGATTGAGA+GGG 0.551408 7.1:-23573042 None:intergenic
CTTCCTCGCGGAGGAAGTGG+AGG 0.556212 7.1:-23573443 None:intergenic
TGAAGAGGAGGTTAGGGCAA+CGG 0.557020 7.1:-23573392 None:intergenic
CATGAGGTTGAGGTTTCTTG+AGG 0.557913 7.1:+23573539 MS.gene024127:CDS
CAAGGTTGCCGGCGATATTG+GGG 0.558881 7.1:+23573604 MS.gene024127:CDS
GGGAAATGGAGGTGGTGAAG+AGG 0.559827 7.1:-23573290 None:intergenic
TGTCGGCCTCGGTGAAAGAG+TGG 0.565492 7.1:-23573239 None:intergenic
ATGTGATGATGGTGAGGATG+TGG 0.567993 7.1:-23573206 None:intergenic
TGTGTATTTGGTGAAAGAGA+TGG 0.569565 7.1:+23573659 MS.gene024127:CDS
TGGAGAAGAGGATTGTTCCA+AGG 0.570343 7.1:+23573733 MS.gene024127:CDS
CTTTGAATAGAATGTTGATG+TGG 0.576656 7.1:+23573790 MS.gene024127:CDS
TTTGAATAGAATGTTGATGT+GGG 0.578021 7.1:+23573791 MS.gene024127:CDS
TTTGGTGAAAGAGATGGAGA+GGG 0.581785 7.1:+23573665 MS.gene024127:CDS
GGACAATGGTGGACTAGCCG+GGG 0.587321 7.1:-23573264 None:intergenic
TGAGGAATGTGATGATGGTG+AGG 0.588656 7.1:-23573212 None:intergenic
TGTGGTTTACGTCGGTGAAG+AGG 0.589418 7.1:-23573407 None:intergenic
TTCCACAGTGGCGAGGAGGT+CGG 0.594168 7.1:-23573349 None:intergenic
CACAGTGGCGAGGAGGTCGG+AGG 0.596584 7.1:-23573346 None:intergenic
AAGCGAGGAATGTTTGTGCA+AGG 0.596914 7.1:+23573586 MS.gene024127:CDS
GGATTTGAGGAATGTGATGA+TGG 0.599559 7.1:-23573217 None:intergenic
GGATGTGGTTGATGGTGTCA+AGG 0.602083 7.1:-23573191 None:intergenic
AGTGGTTGGGTTTACGTACG+AGG 0.606381 7.1:+23573563 MS.gene024127:CDS
ATGATAAGTTCTATGCAAAG+TGG 0.608848 7.1:+23573817 MS.gene024127:CDS
ACATCGTACCCCAATATCGC+CGG 0.610968 7.1:-23573612 None:intergenic
GGTTTACGTACGAGGAAGCG+AGG 0.621107 7.1:+23573571 MS.gene024127:CDS
GTCGGCCTCGGTGAAAGAGT+GGG 0.623113 7.1:-23573238 None:intergenic
GGTTTACGTCGGTGAAGAGG+AGG 0.624023 7.1:-23573404 None:intergenic
AGGCGAGGAAGGTGAAGACG+GGG 0.626763 7.1:-23573326 None:intergenic
GGCGATATTGGGGTACGATG+TGG 0.628281 7.1:+23573614 MS.gene024127:CDS
TGGTTGATGGTGTCAAGGTG+AGG 0.634445 7.1:-23573186 None:intergenic
GGCGAGGAAGGTGAAGACGG+GGG 0.649632 7.1:-23573325 None:intergenic
TTTGAGGATGTGGTTTACGT+CGG 0.649863 7.1:-23573415 None:intergenic
TTCCTCGCGGAGGAAGTGGA+GGG 0.650738 7.1:-23573442 None:intergenic
GAGAGTCTTCCACAGTGGCG+AGG 0.656874 7.1:-23573356 None:intergenic
CTCCGACCTCCTCGCCACTG+TGG 0.667154 7.1:+23573347 MS.gene024127:CDS
GCATCTTCTCAACACGCGTG+TGG 0.668292 7.1:+23573506 MS.gene024127:CDS
GACAATGGTGGACTAGCCGG+GGG 0.669422 7.1:-23573263 None:intergenic
AGTCTTCCACAGTGGCGAGG+AGG 0.672229 7.1:-23573353 None:intergenic
AGAGGAGGTTAGGGCAACGG+AGG 0.682019 7.1:-23573389 None:intergenic
GTGTGGAGAAGATGCGCATG+AGG 0.685391 7.1:+23573523 MS.gene024127:CDS
AACCCTCCACTTCCTCCGCG+AGG 0.690297 7.1:+23573440 MS.gene024127:CDS
TGAAGAGGTTGGGACAATGG+TGG 0.704696 7.1:-23573275 None:intergenic
ACGATGTGGAGAATAACTTG+TGG 0.706381 7.1:+23573628 MS.gene024127:CDS
GCCACTGTGGAAGACTCTCG+CGG 0.706536 7.1:+23573360 MS.gene024127:CDS
TACTAACTCCAACTTCCTCG+CGG 0.708475 7.1:-23573455 None:intergenic
TTGAATAGAATGTTGATGTG+GGG 0.710612 7.1:+23573792 MS.gene024127:CDS
TAACTCCAACTTCCTCGCGG+AGG 0.712692 7.1:-23573452 None:intergenic
GCCGCGAGAGTCTTCCACAG+TGG 0.750300 7.1:-23573361 None:intergenic
CAAATCCCACTCTTTCACCG+AGG 0.751367 7.1:+23573233 MS.gene024127:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATGGTTAGTGATTTT+AGG - chr7.1:23573140-23573159 None:intergenic 20.0%
! TTTGAATAGAATGTTGATGT+GGG + chr7.1:23573791-23573810 MS.gene024127:CDS 25.0%
AAACTAAACCCAAAAAACTG+CGG - chr7.1:23573714-23573733 None:intergenic 30.0%
ATGATAAGTTCTATGCAAAG+TGG + chr7.1:23573817-23573836 MS.gene024127:CDS 30.0%
CACATCAACATTCTATTCAA+AGG - chr7.1:23573792-23573811 None:intergenic 30.0%
CATTTGCATTTGAAAGAAAG+AGG + chr7.1:23573756-23573775 MS.gene024127:CDS 30.0%
CTTTGAATAGAATGTTGATG+TGG + chr7.1:23573790-23573809 MS.gene024127:CDS 30.0%
TTCACCAAATACACAAACTT+CGG - chr7.1:23573654-23573673 None:intergenic 30.0%
TTGAATAGAATGTTGATGTG+GGG + chr7.1:23573792-23573811 MS.gene024127:CDS 30.0%
! ATAGAGTTTGATGATTGAGA+GGG - chr7.1:23573045-23573064 None:intergenic 30.0%
! TATAGAGTTTGATGATTGAG+AGG - chr7.1:23573046-23573065 None:intergenic 30.0%
! TTTTGTGTTGGGGTTTATTA+TGG - chr7.1:23573154-23573173 None:intergenic 30.0%
!! ATTTGAAAGAAAGAGGTGTT+AGG + chr7.1:23573763-23573782 MS.gene024127:CDS 30.0%
!! GTAATGGAGATTTTCATTGT+AGG - chr7.1:23573118-23573137 None:intergenic 30.0%
!! TGGTTAGTGATTTTAGGTAA+TGG - chr7.1:23573134-23573153 None:intergenic 30.0%
AACCGTTATCCTAACAGAAA+CGG + chr7.1:23573072-23573091 MS.gene024127:CDS 35.0%
AACCGTTTCTGTTAGGATAA+CGG - chr7.1:23573077-23573096 None:intergenic 35.0%
TCTTTCAAATGCAAATGCCT+TGG - chr7.1:23573753-23573772 None:intergenic 35.0%
TTGATGTAACCGTTTCTGTT+AGG - chr7.1:23573084-23573103 None:intergenic 35.0%
! TGTGTATTTGGTGAAAGAGA+TGG + chr7.1:23573659-23573678 MS.gene024127:CDS 35.0%
! TTTCTGTTAGGATAACGGTT+AGG - chr7.1:23573072-23573091 None:intergenic 35.0%
!!! AAGAAGTTTCCGCAGTTTTT+TGG + chr7.1:23573702-23573721 MS.gene024127:CDS 35.0%
!!! AGAAGTTTCCGCAGTTTTTT+GGG + chr7.1:23573703-23573722 MS.gene024127:CDS 35.0%
!!! AGGTTGTTTGGTTTTGTGTT+GGG - chr7.1:23573165-23573184 None:intergenic 35.0%
!!! GCAGTTTTTTGGGTTTAGTT+TGG + chr7.1:23573713-23573732 MS.gene024127:CDS 35.0%
!!! TAGGTTGTTTGGTTTTGTGT+TGG - chr7.1:23573166-23573185 None:intergenic 35.0%
ACGATGTGGAGAATAACTTG+TGG + chr7.1:23573628-23573647 MS.gene024127:CDS 40.0%
GAGGATAAGAAGATGGAGTT+TGG - chr7.1:23573023-23573042 None:intergenic 40.0%
GGATTTGAGGAATGTGATGA+TGG - chr7.1:23573220-23573239 None:intergenic 40.0%
TTGGAGTTAGTAACCTGAAC+AGG + chr7.1:23573466-23573485 MS.gene024127:CDS 40.0%
TTTGAGGATGTGGTTTACGT+CGG - chr7.1:23573418-23573437 None:intergenic 40.0%
TTTGGTGAAAGAGATGGAGA+GGG + chr7.1:23573665-23573684 MS.gene024127:CDS 40.0%
! ATTTGGTGAAAGAGATGGAG+AGG + chr7.1:23573664-23573683 MS.gene024127:CDS 40.0%
!! TTGGGTTTAGTTTGGAGAAG+AGG + chr7.1:23573721-23573740 MS.gene024127:CDS 40.0%
!!! GGTTGTTTGGTTTTGTGTTG+GGG - chr7.1:23573164-23573183 None:intergenic 40.0%
AAGAAGATGGAGTTTGGCGT+TGG - chr7.1:23573017-23573036 None:intergenic 45.0%
AAGCGAGGAATGTTTGTGCA+AGG + chr7.1:23573586-23573605 MS.gene024127:CDS 45.0%
AGGTTTCTTGAGGAAGTGGT+TGG + chr7.1:23573549-23573568 MS.gene024127:CDS 45.0%
CATGAGGTTGAGGTTTCTTG+AGG + chr7.1:23573539-23573558 MS.gene024127:CDS 45.0%
GAATGTTTGTGCAAGGTTGC+CGG + chr7.1:23573593-23573612 MS.gene024127:CDS 45.0%
GGTTTCTTGAGGAAGTGGTT+GGG + chr7.1:23573550-23573569 MS.gene024127:CDS 45.0%
GTGGCCGAAGTTTGTGTATT+TGG + chr7.1:23573647-23573666 MS.gene024127:CDS 45.0%
GTTGAGGTTTCTTGAGGAAG+TGG + chr7.1:23573545-23573564 MS.gene024127:CDS 45.0%
TACTAACTCCAACTTCCTCG+CGG - chr7.1:23573458-23573477 None:intergenic 45.0%
TCAAGGTGAGGTAGGTTGTT+TGG - chr7.1:23573177-23573196 None:intergenic 45.0%
TGAGAGGGAGGATAAGAAGA+TGG - chr7.1:23573030-23573049 None:intergenic 45.0%
TGGAGAAGAGGATTGTTCCA+AGG + chr7.1:23573733-23573752 MS.gene024127:CDS 45.0%
! GAGTTTGATGATTGAGAGGG+AGG - chr7.1:23573042-23573061 None:intergenic 45.0%
!! ATGTGATGATGGTGAGGATG+TGG - chr7.1:23573209-23573228 None:intergenic 45.0%
!! TGAGGAATGTGATGATGGTG+AGG - chr7.1:23573215-23573234 None:intergenic 45.0%
!! TTTGGCGTTGGTGGAAAGAT+TGG - chr7.1:23573005-23573024 None:intergenic 45.0%
AATGGAGGTGGTGAAGAGGT+TGG - chr7.1:23573289-23573308 None:intergenic 50.0%
ACATCGTACCCCAATATCGC+CGG - chr7.1:23573615-23573634 None:intergenic 50.0%
ACCTGAACAGGCCAACTAAC+AGG + chr7.1:23573478-23573497 MS.gene024127:CDS 50.0%
AGAAGATGCGCATGAGGTTG+AGG + chr7.1:23573529-23573548 MS.gene024127:CDS 50.0%
AGATGCGCGTTCCTGTTAGT+TGG - chr7.1:23573492-23573511 None:intergenic 50.0%
AGTGGTTGGGTTTACGTACG+AGG + chr7.1:23573563-23573582 MS.gene024127:CDS 50.0%
ATGGAGGTGGTGAAGAGGTT+GGG - chr7.1:23573288-23573307 None:intergenic 50.0%
CAAATCCCACTCTTTCACCG+AGG + chr7.1:23573233-23573252 MS.gene024127:CDS 50.0%
CGGTGAAAGAGTGGGATTTG+AGG - chr7.1:23573233-23573252 None:intergenic 50.0%
GATGGTGAGGATGTGGTTGA+TGG - chr7.1:23573202-23573221 None:intergenic 50.0%
TGAAGAGGAGGTTAGGGCAA+CGG - chr7.1:23573395-23573414 None:intergenic 50.0%
TGAAGAGGTTGGGACAATGG+TGG - chr7.1:23573278-23573297 None:intergenic 50.0%
TGGTGAAGAGGTTGGGACAA+TGG - chr7.1:23573281-23573300 None:intergenic 50.0%
TGTGGTTTACGTCGGTGAAG+AGG - chr7.1:23573410-23573429 None:intergenic 50.0%
! AAGATGGAGTTTGGCGTTGG+TGG - chr7.1:23573014-23573033 None:intergenic 50.0%
! TCCTGTTAGTTGGCCTGTTC+AGG - chr7.1:23573482-23573501 None:intergenic 50.0%
! TGATGGTGTCAAGGTGAGGT+AGG - chr7.1:23573185-23573204 None:intergenic 50.0%
!! GGATGTGGTTGATGGTGTCA+AGG - chr7.1:23573194-23573213 None:intergenic 50.0%
!! TGGTTGATGGTGTCAAGGTG+AGG - chr7.1:23573189-23573208 None:intergenic 50.0%
ACGTCGGTGAAGAGGAGGTT+AGG - chr7.1:23573402-23573421 None:intergenic 55.0%
CAAGGTTGCCGGCGATATTG+GGG + chr7.1:23573604-23573623 MS.gene024127:CDS 55.0%
CGTCGGTGAAGAGGAGGTTA+GGG - chr7.1:23573401-23573420 None:intergenic 55.0%
GAAAGAGATGGAGAGGGAGG+TGG + chr7.1:23573671-23573690 MS.gene024127:CDS 55.0%
GCAAGGTTGCCGGCGATATT+GGG + chr7.1:23573603-23573622 MS.gene024127:CDS 55.0%
GCATCTTCTCAACACGCGTG+TGG + chr7.1:23573506-23573525 MS.gene024127:CDS 55.0%
GGCGATATTGGGGTACGATG+TGG + chr7.1:23573614-23573633 MS.gene024127:CDS 55.0%
GGGAAATGGAGGTGGTGAAG+AGG - chr7.1:23573293-23573312 None:intergenic 55.0%
GGTGAAAGAGATGGAGAGGG+AGG + chr7.1:23573668-23573687 MS.gene024127:CDS 55.0%
GGTTAGGGCAACGGAGGATA+AGG - chr7.1:23573386-23573405 None:intergenic 55.0%
GGTTTACGTACGAGGAAGCG+AGG + chr7.1:23573571-23573590 MS.gene024127:CDS 55.0%
GGTTTACGTCGGTGAAGAGG+AGG - chr7.1:23573407-23573426 None:intergenic 55.0%
GTGTGGAGAAGATGCGCATG+AGG + chr7.1:23573523-23573542 MS.gene024127:CDS 55.0%
TAACTCCAACTTCCTCGCGG+AGG - chr7.1:23573455-23573474 None:intergenic 55.0%
TGCAAGGTTGCCGGCGATAT+TGG + chr7.1:23573602-23573621 MS.gene024127:CDS 55.0%
!! GGAAGTGGAGGGTTGGTTTG+AGG - chr7.1:23573434-23573453 None:intergenic 55.0%
!! GGAGGGTTGGTTTGAGGATG+TGG - chr7.1:23573428-23573447 None:intergenic 55.0%
!! GGCGTTGGTGGAAAGATTGG+AGG - chr7.1:23573002-23573021 None:intergenic 55.0%
!! TGGGACAATGGTGGACTAGC+CGG - chr7.1:23573269-23573288 None:intergenic 55.0%
AGAGGAGGTTAGGGCAACGG+AGG - chr7.1:23573392-23573411 None:intergenic 60.0%
AGGCGAGGAAGGTGAAGACG+GGG - chr7.1:23573329-23573348 None:intergenic 60.0%
AGTCTTCCACAGTGGCGAGG+AGG - chr7.1:23573356-23573375 None:intergenic 60.0%
CAACTTCCTCGCGGAGGAAG+TGG - chr7.1:23573449-23573468 None:intergenic 60.0%
CACTTCCTCCGCGAGGAAGT+TGG + chr7.1:23573447-23573466 MS.gene024127:CDS 60.0%
GAAGGTGAAGACGGGGGAGA+GGG - chr7.1:23573322-23573341 None:intergenic 60.0%
GAGAGTCTTCCACAGTGGCG+AGG - chr7.1:23573359-23573378 None:intergenic 60.0%
GAGGCGAGGAAGGTGAAGAC+GGG - chr7.1:23573330-23573349 None:intergenic 60.0%
GAGGGAGGTAGGGGAAATGG+AGG - chr7.1:23573304-23573323 None:intergenic 60.0%
GCCACTGTGGAAGACTCTCG+CGG + chr7.1:23573360-23573379 MS.gene024127:CDS 60.0%
GGAGAGGGAGGTAGGGGAAA+TGG - chr7.1:23573307-23573326 None:intergenic 60.0%
GGAGGCGAGGAAGGTGAAGA+CGG - chr7.1:23573331-23573350 None:intergenic 60.0%
GGAGGTAGGGGAAATGGAGG+TGG - chr7.1:23573301-23573320 None:intergenic 60.0%
GTCGGCCTCGGTGAAAGAGT+GGG - chr7.1:23573241-23573260 None:intergenic 60.0%
TGTCGGCCTCGGTGAAAGAG+TGG - chr7.1:23573242-23573261 None:intergenic 60.0%
TTCCACAGTGGCGAGGAGGT+CGG - chr7.1:23573352-23573371 None:intergenic 60.0%
TTCCTCGCGGAGGAAGTGGA+GGG - chr7.1:23573445-23573464 None:intergenic 60.0%
!! GACAATGGTGGACTAGCCGG+GGG - chr7.1:23573266-23573285 None:intergenic 60.0%
!! GGACAATGGTGGACTAGCCG+GGG - chr7.1:23573267-23573286 None:intergenic 60.0%
!! GGGACAATGGTGGACTAGCC+GGG - chr7.1:23573268-23573287 None:intergenic 60.0%
AACCCTCCACTTCCTCCGCG+AGG + chr7.1:23573440-23573459 MS.gene024127:CDS 65.0%
AAGACGGGGGAGAGGGAGGT+AGG - chr7.1:23573315-23573334 None:intergenic 65.0%
AGACGGGGGAGAGGGAGGTA+GGG - chr7.1:23573314-23573333 None:intergenic 65.0%
CTTCCTCGCGGAGGAAGTGG+AGG - chr7.1:23573446-23573465 None:intergenic 65.0%
GCCGCGAGAGTCTTCCACAG+TGG - chr7.1:23573364-23573383 None:intergenic 65.0%
GGAAGGTGAAGACGGGGGAG+AGG - chr7.1:23573323-23573342 None:intergenic 65.0%
GGCGAGGAAGGTGAAGACGG+GGG - chr7.1:23573328-23573347 None:intergenic 65.0%
TCGCGGAGGAAGTGGAGGGT+TGG - chr7.1:23573441-23573460 None:intergenic 65.0%
!! GTGGACTAGCCGGGGGATGT+CGG - chr7.1:23573259-23573278 None:intergenic 65.0%
CACAGTGGCGAGGAGGTCGG+AGG - chr7.1:23573349-23573368 None:intergenic 70.0%
CTCCGACCTCCTCGCCACTG+TGG + chr7.1:23573347-23573366 MS.gene024127:CDS 70.0%
GACGGGGGAGAGGGAGGTAG+GGG - chr7.1:23573313-23573332 None:intergenic 70.0%
GAGGAGGTCGGAGGCGAGGA+AGG - chr7.1:23573340-23573359 None:intergenic 70.0%
GGTGAAGACGGGGGAGAGGG+AGG - chr7.1:23573319-23573338 None:intergenic 70.0%
TAGCCGGGGGATGTCGGCCT+CGG - chr7.1:23573253-23573272 None:intergenic 70.0%
TCACCGAGGCCGACATCCCC+CGG + chr7.1:23573247-23573266 MS.gene024127:CDS 70.0%
TGGCGAGGAGGTCGGAGGCG+AGG - chr7.1:23573344-23573363 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 23572991 23573845 23572991 ID=MS.gene024127
chr7.1 mRNA 23572991 23573845 23572991 ID=MS.gene024127.t1;Parent=MS.gene024127
chr7.1 exon 23572991 23573845 23572991 ID=MS.gene024127.t1.exon1;Parent=MS.gene024127.t1
chr7.1 CDS 23572991 23573845 23572991 ID=cds.MS.gene024127.t1;Parent=MS.gene024127.t1
Gene Sequence

>MS.gene024127

ATGGTCTTCCTCCAATCTTTCCACCAACGCCAAACTCCATCTTCTTATCCTCCCTCTCAATCATCAAACTCTATAGTACCTAACCGTTATCCTAACAGAAACGGTTACATCAAGTTCAGAACAACCTACAATGAAAATCTCCATTACCTAAAATCACTAACCATAATAAACCCCAACACAAAACCAAACAACCTACCTCACCTTGACACCATCAACCACATCCTCACCATCATCACATTCCTCAAATCCCACTCTTTCACCGAGGCCGACATCCCCCGGCTAGTCCACCATTGTCCCAACCTCTTCACCACCTCCATTTCCCCTACCTCCCTCTCCCCCGTCTTCACCTTCCTCGCCTCCGACCTCCTCGCCACTGTGGAAGACTCTCGCGGCCTTATCCTCCGTTGCCCTAACCTCCTCTTCACCGACGTAAACCACATCCTCAAACCAACCCTCCACTTCCTCCGCGAGGAAGTTGGAGTTAGTAACCTGAACAGGCCAACTAACAGGAACGCGCATCTTCTCAACACGCGTGTGGAGAAGATGCGCATGAGGTTGAGGTTTCTTGAGGAAGTGGTTGGGTTTACGTACGAGGAAGCGAGGAATGTTTGTGCAAGGTTGCCGGCGATATTGGGGTACGATGTGGAGAATAACTTGTGGCCGAAGTTTGTGTATTTGGTGAAAGAGATGGAGAGGGAGGTGGAAGAGTTGAAGAAGTTTCCGCAGTTTTTTGGGTTTAGTTTGGAGAAGAGGATTGTTCCAAGGCATTTGCATTTGAAAGAAAGAGGTGTTAGGATTCCTTTGAATAGAATGTTGATGTGGGGTGATGATAAGTTCTATGCAAAGTGGAAGTGA
Protein sequence

>MS.gene024127.t1

MVFLQSFHQRQTPSSYPPSQSSNSIVPNRYPNRNGYIKFRTTYNENLHYLKSLTIINPNTKPNNLPHLDTINHILTIITFLKSHSFTEADIPRLVHHCPNLFTTSISPTSLSPVFTFLASDLLATVEDSRGLILRCPNLLFTDVNHILKPTLHFLREEVGVSNLNRPTNRNAHLLNTRVEKMRMRLRFLEEVVGFTYEEARNVCARLPAILGYDVENNLWPKFVYLVKEMEREVEELKKFPQFFGFSLEKRIVPRHLHLKERGVRIPLNRMLMWGDDKFYAKWK