AlfalfaGEDB | MS.gene024136

M. sativa cultivar XinJiangDaYe / MS.gene024136

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024136.t1	XP_003624304.1	82.5	114	19	1	1	114	949	1061	5.90E-46	193.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024136.t1	Q8VZG8	47.7	86	42	1	1	86	955	1037	6.7e-14	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024136.t1	G7KTF4	82.5	114	19	1	1	114	949	1061	4.3e-46	193.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024136.t1	MTR_7g481630	79.825	114	23	0	1	114	80	193	9.13e-65	194
MS.gene024136.t1	MTR_7g481590	79.825	114	23	0	1	114	203	316	9.50e-63	193
MS.gene024136.t1	MTR_7g081480	82.456	114	19	1	1	114	949	1061	2.11e-61	202
MS.gene024136.t1	MTR_7g081410	81.579	114	21	0	1	114	946	1059	6.29e-61	201
MS.gene024136.t1	MTR_7g081410	81.579	114	21	0	1	114	826	939	2.32e-60	198
MS.gene024136.t1	MTR_7g081570	79.825	114	23	0	1	114	939	1052	8.32e-60	197
MS.gene024136.t1	MTR_7g081780	76.106	113	26	1	1	113	947	1058	2.02e-55	185
MS.gene024136.t1	MTR_7g081720	56.034	116	48	2	1	114	964	1078	2.02e-36	130
MS.gene024136.t1	MTR_8g445960	52.525	99	46	1	1	98	63	161	1.88e-32	112
MS.gene024136.t1	MTR_8g044940	52.525	99	46	1	1	98	63	161	1.88e-32	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024136.t1	AT4G08850	47.674	86	42	1	1	86	955	1037	9.43e-19	80.5
MS.gene024136.t1	AT1G35710	46.512	86	42	2	1	86	1031	1112	7.79e-17	75.1
MS.gene024136.t1	AT1G17230	34.615	104	57	2	1	97	977	1076	3.40e-12	62.0
MS.gene024136.t1	AT1G17230	34.615	104	57	2	1	97	977	1076	3.57e-12	62.0
MS.gene024136.t1	AT5G62710	39.583	96	49	3	3	93	457	548	2.08e-11	59.7
MS.gene024136.t1	AT5G62710	40.426	94	47	3	5	93	493	582	2.38e-11	59.3
MS.gene024136.t1	AT2G33170	35.238	105	48	4	1	93	1003	1099	4.60e-11	58.5
MS.gene024136.t1	AT2G33170	35.238	105	48	4	1	93	1003	1099	4.60e-11	58.5

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Find 20 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGATGTATACAGTTT+TGG	0.382117	7.1:-23373655	MS.gene024136:CDS
AACAACATATCATTAGCCAC+TGG	0.627048	7.1:+23373556	None:intergenic
AAGATCACCTCCTCATCAAT+TGG	0.417895	7.1:+23373493	None:intergenic
AATAATGAAATGAGGTCTCC+AGG	0.502410	7.1:+23373598	None:intergenic
AGGAGGTGATCTTGATTACA+AGG	0.518997	7.1:-23373483	MS.gene024136:CDS
ATCAGGAAAATCACCTTTGG+TGG	0.476814	7.1:-23373389	MS.gene024136:CDS
ATTGGTTTCATAACATGTTG+AGG	0.526760	7.1:+23373511	None:intergenic
CAAGTTCACATGATCAGACT+AGG	0.543301	7.1:-23373361	MS.gene024136:CDS
CATCTTACATACTTGATCCA+TGG	0.528171	7.1:+23373417	None:intergenic
GATCAAGTATGTAAGATGCT+TGG	0.514611	7.1:-23373412	MS.gene024136:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTATGAAACCAATTGATG+AGG	-	chr7.1:23373515-23373534	MS.gene024136:CDS	30.0%
AACAACATATCATTAGCCAC+TGG	+	chr7.1:23373465-23373484	None:intergenic	35.0%
AATAATGAAATGAGGTCTCC+AGG	+	chr7.1:23373423-23373442	None:intergenic	35.0%
CATCTTACATACTTGATCCA+TGG	+	chr7.1:23373604-23373623	None:intergenic	35.0%
GATCAAGTATGTAAGATGCT+TGG	-	chr7.1:23373606-23373625	MS.gene024136:CDS	35.0%
TATGAAACCAATTGATGAGG+AGG	-	chr7.1:23373518-23373537	MS.gene024136:CDS	35.0%
TTACATACTTGATCCATGGT+TGG	+	chr7.1:23373600-23373619	None:intergenic	35.0%
AAGATCACCTCCTCATCAAT+TGG	+	chr7.1:23373528-23373547	None:intergenic	40.0%
AGGAGGTGATCTTGATTACA+AGG	-	chr7.1:23373535-23373554	MS.gene024136:CDS	40.0%
ATCAGGAAAATCACCTTTGG+TGG	-	chr7.1:23373629-23373648	MS.gene024136:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	23373348	23373692	23373348	ID=MS.gene024136
chr7.1	mRNA	23373348	23373692	23373348	ID=MS.gene024136.t1;Parent=MS.gene024136
chr7.1	exon	23373348	23373692	23373348	ID=MS.gene024136.t1.exon1;Parent=MS.gene024136.t1
chr7.1	CDS	23373348	23373692	23373348	ID=cds.MS.gene024136.t1;Parent=MS.gene024136.t1

Gene Sequence	>MS.gene024136 ATGGAAGTGAATGAGAAATGTGATGTATACAGTTTTGGAGTGCTTGCTTTGGAAGTTTTAATAGGAAAACATCCTGGAGACCTCATTTCATTATTTTTGTCACCATCTACAATGCCAGTGGCTAATGATATGTTGTTGACAGATGTTTTAGATCAAAGACCTCAACATGTTATGAAACCAATTGATGAGGAGGTGATCTTGATTACAAGGGTCGCATTTTCTTGCATGAGTCAAAATCCACGTTCTCGTCCAACCATGGATCAAGTATGTAAGATGCTTGGATCAGGAAAATCACCTTTGGTGGAAAAGCAAGTTCACATGATCAGACTAGGACAATTTCACTAA
Protein sequence	>MS.gene024136.t1 MEVNEKCDVYSFGVLALEVLIGKHPGDLISLFLSPSTMPVANDMLLTDVLDQRPQHVMKPIDEEVILITRVAFSCMSQNPRSRPTMDQVCKMLGSGKSPLVEKQVHMIRLGQFH