Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024238.t1 | RHN47318.1 | 86.2 | 152 | 19 | 1 | 1 | 152 | 1 | 150 | 1.40E-70 | 275.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024238.t1 | Q75HE5 | 37.1 | 143 | 81 | 5 | 4 | 143 | 11 | 147 | 1.7e-16 | 87.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024238.t1 | A0A072U1D6 | 90.2 | 143 | 14 | 0 | 1 | 143 | 1 | 143 | 1.0e-70 | 275.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene024238.t1 | TF | NAC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024238.t1 | MTR_7g083360 | 90.210 | 143 | 14 | 0 | 1 | 143 | 1 | 143 | 1.36e-95 | 274 |
| MS.gene024238.t1 | MTR_7g083370 | 80.741 | 135 | 26 | 0 | 1 | 135 | 1 | 135 | 1.08e-77 | 228 |
| MS.gene024238.t1 | MTR_7g083330 | 64.130 | 184 | 57 | 2 | 3 | 177 | 11 | 194 | 2.43e-77 | 229 |
| MS.gene024238.t1 | MTR_3g088110 | 33.784 | 148 | 91 | 4 | 6 | 150 | 3 | 146 | 6.00e-21 | 87.4 |
| MS.gene024238.t1 | MTR_7g085220 | 31.169 | 154 | 93 | 4 | 3 | 145 | 1 | 152 | 6.14e-20 | 85.5 |
| MS.gene024238.t1 | MTR_3g109340 | 33.088 | 136 | 85 | 5 | 4 | 135 | 16 | 149 | 1.36e-19 | 84.7 |
| MS.gene024238.t1 | MTR_3g109340 | 33.088 | 136 | 85 | 5 | 4 | 135 | 16 | 149 | 1.48e-19 | 84.7 |
| MS.gene024238.t1 | MTR_2157s0010 | 33.088 | 136 | 84 | 4 | 3 | 133 | 1 | 134 | 6.95e-19 | 81.6 |
| MS.gene024238.t1 | MTR_8g059170 | 27.222 | 180 | 112 | 6 | 6 | 172 | 10 | 183 | 1.32e-18 | 81.6 |
| MS.gene024238.t1 | MTR_7g085260 | 34.091 | 132 | 79 | 5 | 8 | 133 | 15 | 144 | 2.06e-18 | 81.6 |
| MS.gene024238.t1 | MTR_4g081870 | 32.117 | 137 | 86 | 5 | 4 | 136 | 3 | 136 | 3.09e-18 | 79.7 |
| MS.gene024238.t1 | MTR_6g032770 | 30.952 | 168 | 103 | 7 | 8 | 164 | 16 | 181 | 9.35e-18 | 79.7 |
| MS.gene024238.t1 | MTR_4g089135 | 34.375 | 128 | 78 | 4 | 10 | 133 | 15 | 140 | 1.13e-17 | 79.3 |
| MS.gene024238.t1 | MTR_3g096920 | 30.178 | 169 | 103 | 5 | 6 | 163 | 3 | 167 | 1.15e-17 | 78.6 |
| MS.gene024238.t1 | MTR_2g080010 | 31.469 | 143 | 89 | 5 | 2 | 140 | 7 | 144 | 1.55e-17 | 79.0 |
| MS.gene024238.t1 | MTR_7g005280 | 33.835 | 133 | 79 | 6 | 5 | 133 | 10 | 137 | 1.92e-17 | 77.4 |
| MS.gene024238.t1 | MTR_2g079990 | 30.496 | 141 | 89 | 5 | 6 | 143 | 12 | 146 | 2.24e-17 | 78.6 |
| MS.gene024238.t1 | MTR_2g079990 | 30.496 | 141 | 89 | 5 | 6 | 143 | 12 | 146 | 2.45e-17 | 78.6 |
| MS.gene024238.t1 | MTR_5g076850 | 33.588 | 131 | 83 | 3 | 6 | 133 | 2 | 131 | 2.54e-17 | 79.0 |
| MS.gene024238.t1 | MTR_3g096920 | 32.353 | 136 | 85 | 4 | 6 | 138 | 3 | 134 | 3.92e-17 | 77.4 |
| MS.gene024238.t1 | MTR_3g116070 | 32.121 | 165 | 96 | 7 | 7 | 166 | 20 | 173 | 6.40e-17 | 77.0 |
| MS.gene024238.t1 | MTR_1g008740 | 33.582 | 134 | 82 | 5 | 7 | 135 | 10 | 141 | 7.27e-17 | 77.0 |
| MS.gene024238.t1 | MTR_1g008740 | 33.582 | 134 | 82 | 5 | 7 | 135 | 24 | 155 | 7.83e-17 | 77.0 |
| MS.gene024238.t1 | MTR_8g094580 | 30.147 | 136 | 88 | 4 | 6 | 138 | 3 | 134 | 8.59e-17 | 76.3 |
| MS.gene024238.t1 | MTR_6g477900 | 33.333 | 129 | 82 | 3 | 8 | 133 | 4 | 131 | 1.04e-16 | 75.1 |
| MS.gene024238.t1 | MTR_3g064580 | 32.824 | 131 | 84 | 3 | 6 | 133 | 2 | 131 | 1.09e-16 | 77.0 |
| MS.gene024238.t1 | MTR_2g064090 | 31.298 | 131 | 86 | 3 | 6 | 133 | 2 | 131 | 1.17e-16 | 76.3 |
| MS.gene024238.t1 | MTR_6g011860 | 33.333 | 135 | 85 | 3 | 9 | 140 | 14 | 146 | 1.86e-16 | 76.3 |
| MS.gene024238.t1 | MTR_6g084430 | 33.077 | 130 | 81 | 5 | 7 | 133 | 2 | 128 | 3.48e-16 | 75.1 |
| MS.gene024238.t1 | MTR_3g070030 | 34.848 | 132 | 80 | 5 | 5 | 133 | 14 | 142 | 4.40e-16 | 74.7 |
| MS.gene024238.t1 | MTR_5g041940 | 33.083 | 133 | 82 | 6 | 8 | 136 | 1 | 130 | 4.40e-16 | 73.9 |
| MS.gene024238.t1 | MTR_5g040420 | 32.192 | 146 | 92 | 5 | 7 | 148 | 12 | 154 | 5.56e-16 | 74.7 |
| MS.gene024238.t1 | MTR_6g012670 | 30.719 | 153 | 97 | 5 | 4 | 153 | 14 | 160 | 1.10e-15 | 73.6 |
| MS.gene024238.t1 | MTR_2g078700 | 32.061 | 131 | 83 | 5 | 7 | 133 | 20 | 148 | 1.36e-15 | 73.6 |
| MS.gene024238.t1 | MTR_5g090970 | 34.848 | 132 | 78 | 5 | 7 | 133 | 16 | 144 | 1.89e-15 | 72.8 |
| MS.gene024238.t1 | MTR_5g090970 | 34.848 | 132 | 77 | 5 | 7 | 133 | 16 | 143 | 2.34e-15 | 72.4 |
| MS.gene024238.t1 | MTR_2g068880 | 32.609 | 138 | 85 | 5 | 3 | 133 | 14 | 150 | 2.81e-15 | 72.4 |
| MS.gene024238.t1 | MTR_2g093810 | 30.201 | 149 | 95 | 5 | 10 | 154 | 14 | 157 | 3.04e-15 | 72.4 |
| MS.gene024238.t1 | MTR_7g100990 | 30.827 | 133 | 86 | 4 | 5 | 133 | 6 | 136 | 3.92e-15 | 72.0 |
| MS.gene024238.t1 | MTR_7g011120 | 33.333 | 138 | 86 | 5 | 5 | 139 | 3 | 137 | 7.90e-15 | 70.9 |
| MS.gene024238.t1 | MTR_2g068920 | 33.333 | 138 | 84 | 5 | 2 | 133 | 14 | 149 | 1.03e-14 | 70.5 |
| MS.gene024238.t1 | MTR_4g108760 | 30.769 | 130 | 84 | 5 | 7 | 133 | 14 | 140 | 1.36e-14 | 70.9 |
| MS.gene024238.t1 | MTR_2g062730 | 30.657 | 137 | 91 | 3 | 1 | 133 | 1 | 137 | 1.46e-14 | 70.5 |
| MS.gene024238.t1 | MTR_8g467490 | 32.609 | 138 | 86 | 5 | 7 | 140 | 12 | 146 | 1.68e-14 | 70.5 |
| MS.gene024238.t1 | MTR_1g069805 | 27.879 | 165 | 113 | 4 | 1 | 161 | 1 | 163 | 3.51e-14 | 68.9 |
| MS.gene024238.t1 | MTR_4g035590 | 32.877 | 146 | 91 | 6 | 1 | 142 | 1 | 143 | 4.27e-14 | 69.3 |
| MS.gene024238.t1 | MTR_8g099750 | 28.148 | 135 | 89 | 4 | 3 | 133 | 7 | 137 | 4.93e-14 | 67.8 |
| MS.gene024238.t1 | MTR_1g090720 | 30.233 | 129 | 86 | 3 | 8 | 133 | 40 | 167 | 7.18e-14 | 68.9 |
| MS.gene024238.t1 | MTR_8g023900 | 29.518 | 166 | 108 | 7 | 10 | 167 | 12 | 176 | 1.03e-13 | 68.6 |
| MS.gene024238.t1 | MTR_1g097300 | 30.159 | 126 | 84 | 3 | 13 | 135 | 22 | 146 | 1.55e-13 | 68.2 |
| MS.gene024238.t1 | MTR_3g096140 | 31.452 | 124 | 81 | 3 | 13 | 133 | 10 | 132 | 1.55e-13 | 67.0 |
| MS.gene024238.t1 | MTR_2g086880 | 32.540 | 126 | 80 | 5 | 13 | 135 | 21 | 144 | 4.08e-13 | 66.6 |
| MS.gene024238.t1 | MTR_3g096140 | 31.452 | 124 | 81 | 3 | 13 | 133 | 10 | 132 | 4.27e-13 | 66.6 |
| MS.gene024238.t1 | MTR_2g086880 | 32.540 | 126 | 80 | 5 | 13 | 135 | 21 | 144 | 6.24e-13 | 66.2 |
| MS.gene024238.t1 | MTR_5g069030 | 33.858 | 127 | 80 | 3 | 10 | 133 | 25 | 150 | 1.36e-12 | 65.5 |
| MS.gene024238.t1 | MTR_5g021710 | 31.298 | 131 | 85 | 4 | 7 | 133 | 5 | 134 | 1.79e-12 | 64.7 |
| MS.gene024238.t1 | MTR_7g097090 | 30.657 | 137 | 89 | 4 | 1 | 133 | 1 | 135 | 2.12e-12 | 63.9 |
| MS.gene024238.t1 | MTR_4g094302 | 34.127 | 126 | 73 | 5 | 10 | 133 | 11 | 128 | 2.19e-12 | 62.0 |
| MS.gene024238.t1 | MTR_4g094302 | 34.127 | 126 | 73 | 5 | 10 | 133 | 11 | 128 | 2.29e-12 | 62.8 |
| MS.gene024238.t1 | MTR_3g093040 | 30.233 | 129 | 86 | 3 | 8 | 133 | 106 | 233 | 3.21e-12 | 63.9 |
| MS.gene024238.t1 | MTR_4g036030 | 30.469 | 128 | 84 | 4 | 10 | 133 | 7 | 133 | 3.23e-12 | 63.9 |
| MS.gene024238.t1 | MTR_3g098810 | 26.415 | 159 | 104 | 5 | 3 | 152 | 7 | 161 | 5.58e-12 | 61.2 |
| MS.gene024238.t1 | MTR_8g023840 | 28.571 | 147 | 99 | 4 | 9 | 150 | 10 | 155 | 9.97e-12 | 62.8 |
| MS.gene024238.t1 | MTR_3g093050 | 31.496 | 127 | 83 | 3 | 10 | 133 | 22 | 147 | 1.31e-11 | 62.4 |
| MS.gene024238.t1 | MTR_3g093050 | 31.496 | 127 | 83 | 3 | 10 | 133 | 22 | 147 | 1.42e-11 | 62.4 |
| MS.gene024238.t1 | MTR_4g134460 | 29.032 | 124 | 83 | 3 | 13 | 133 | 57 | 178 | 2.18e-11 | 61.6 |
| MS.gene024238.t1 | MTR_1g090723 | 29.197 | 137 | 89 | 5 | 13 | 145 | 11 | 143 | 6.77e-11 | 60.5 |
| MS.gene024238.t1 | MTR_1g090723 | 29.197 | 137 | 89 | 5 | 13 | 145 | 11 | 143 | 6.97e-11 | 60.5 |
| MS.gene024238.t1 | MTR_4g101680 | 28.906 | 128 | 86 | 4 | 10 | 133 | 7 | 133 | 8.48e-11 | 59.7 |
| MS.gene024238.t1 | MTR_1g090723 | 28.261 | 138 | 89 | 5 | 13 | 145 | 11 | 143 | 8.89e-11 | 60.1 |
| MS.gene024238.t1 | MTR_8g024480 | 26.752 | 157 | 106 | 6 | 1 | 152 | 5 | 157 | 9.42e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024238.t1 | AT5G18270 | 36.434 | 129 | 77 | 4 | 8 | 133 | 19 | 145 | 8.52e-21 | 87.8 |
| MS.gene024238.t1 | AT5G18270 | 35.659 | 129 | 78 | 4 | 8 | 133 | 19 | 145 | 1.23e-20 | 87.4 |
| MS.gene024238.t1 | AT1G77450 | 28.421 | 190 | 118 | 6 | 1 | 176 | 1 | 186 | 7.33e-20 | 84.0 |
| MS.gene024238.t1 | AT5G13180 | 35.556 | 135 | 78 | 5 | 3 | 133 | 7 | 136 | 9.56e-20 | 83.6 |
| MS.gene024238.t1 | AT1G76420 | 35.115 | 131 | 79 | 5 | 7 | 133 | 19 | 147 | 3.07e-19 | 83.6 |
| MS.gene024238.t1 | AT1G61110 | 31.690 | 142 | 89 | 4 | 2 | 140 | 8 | 144 | 4.31e-19 | 82.8 |
| MS.gene024238.t1 | AT5G08790 | 29.032 | 186 | 108 | 6 | 6 | 171 | 3 | 184 | 4.56e-19 | 82.4 |
| MS.gene024238.t1 | AT5G63790 | 33.088 | 136 | 84 | 4 | 6 | 138 | 56 | 187 | 6.34e-19 | 82.4 |
| MS.gene024238.t1 | AT5G63790 | 33.088 | 136 | 84 | 4 | 6 | 138 | 46 | 177 | 6.46e-19 | 82.4 |
| MS.gene024238.t1 | AT3G04070 | 30.464 | 151 | 96 | 4 | 1 | 144 | 1 | 149 | 1.41e-18 | 81.6 |
| MS.gene024238.t1 | AT3G04070 | 30.464 | 151 | 96 | 4 | 1 | 144 | 1 | 149 | 2.52e-18 | 81.3 |
| MS.gene024238.t1 | AT2G24430 | 34.351 | 131 | 80 | 5 | 7 | 133 | 13 | 141 | 3.38e-18 | 80.5 |
| MS.gene024238.t1 | AT2G24430 | 34.351 | 131 | 80 | 5 | 7 | 133 | 13 | 141 | 3.38e-18 | 80.5 |
| MS.gene024238.t1 | AT3G10500 | 33.071 | 127 | 81 | 3 | 10 | 133 | 9 | 134 | 4.87e-18 | 80.9 |
| MS.gene024238.t1 | AT4G27410 | 27.219 | 169 | 112 | 6 | 6 | 166 | 10 | 175 | 8.75e-18 | 79.0 |
| MS.gene024238.t1 | AT5G04410 | 32.836 | 134 | 83 | 4 | 10 | 140 | 9 | 138 | 9.12e-18 | 80.1 |
| MS.gene024238.t1 | AT3G15500 | 28.743 | 167 | 102 | 6 | 6 | 161 | 10 | 170 | 1.02e-17 | 79.0 |
| MS.gene024238.t1 | AT3G17730 | 32.667 | 150 | 95 | 4 | 6 | 150 | 2 | 150 | 1.03e-17 | 78.2 |
| MS.gene024238.t1 | AT1G01720 | 31.915 | 141 | 89 | 4 | 8 | 145 | 5 | 141 | 1.72e-17 | 78.2 |
| MS.gene024238.t1 | AT3G29035 | 29.944 | 177 | 107 | 7 | 7 | 174 | 21 | 189 | 2.15e-17 | 78.2 |
| MS.gene024238.t1 | AT5G53950 | 33.594 | 128 | 79 | 5 | 10 | 133 | 17 | 142 | 2.20e-17 | 78.6 |
| MS.gene024238.t1 | AT5G17260 | 32.824 | 131 | 84 | 3 | 6 | 133 | 2 | 131 | 3.69e-17 | 78.6 |
| MS.gene024238.t1 | AT3G04060 | 32.558 | 129 | 82 | 4 | 8 | 133 | 18 | 144 | 4.27e-17 | 77.8 |
| MS.gene024238.t1 | AT1G52890 | 31.915 | 141 | 87 | 5 | 6 | 143 | 10 | 144 | 7.07e-17 | 76.6 |
| MS.gene024238.t1 | AT3G03200 | 33.588 | 131 | 83 | 3 | 6 | 133 | 2 | 131 | 8.17e-17 | 77.4 |
| MS.gene024238.t1 | AT1G65910 | 32.061 | 131 | 85 | 3 | 6 | 133 | 2 | 131 | 1.22e-16 | 77.0 |
| MS.gene024238.t1 | AT5G39610 | 31.618 | 136 | 87 | 5 | 1 | 133 | 11 | 143 | 1.59e-16 | 75.5 |
| MS.gene024238.t1 | AT5G07680 | 31.655 | 139 | 88 | 6 | 5 | 139 | 12 | 147 | 3.20e-16 | 75.1 |
| MS.gene024238.t1 | AT5G61430 | 32.117 | 137 | 86 | 6 | 7 | 139 | 13 | 146 | 3.23e-16 | 75.1 |
| MS.gene024238.t1 | AT1G69490 | 32.331 | 133 | 84 | 5 | 4 | 133 | 3 | 132 | 3.38e-16 | 74.3 |
| MS.gene024238.t1 | AT2G27300 | 33.333 | 162 | 98 | 7 | 13 | 170 | 17 | 172 | 4.63e-16 | 74.7 |
| MS.gene024238.t1 | AT5G07680 | 32.353 | 136 | 85 | 6 | 8 | 139 | 1 | 133 | 5.29e-16 | 74.3 |
| MS.gene024238.t1 | AT2G43000 | 33.846 | 130 | 79 | 5 | 7 | 133 | 16 | 141 | 7.32e-16 | 73.6 |
| MS.gene024238.t1 | AT5G39820 | 31.159 | 138 | 88 | 5 | 7 | 140 | 18 | 152 | 8.52e-16 | 73.9 |
| MS.gene024238.t1 | AT3G10490 | 33.088 | 136 | 85 | 5 | 2 | 133 | 19 | 152 | 1.17e-15 | 72.4 |
| MS.gene024238.t1 | AT2G33480 | 32.812 | 128 | 75 | 5 | 10 | 133 | 15 | 135 | 1.24e-15 | 72.8 |
| MS.gene024238.t1 | AT2G33480 | 32.812 | 128 | 75 | 5 | 10 | 133 | 15 | 135 | 1.28e-15 | 72.8 |
| MS.gene024238.t1 | AT4G27410 | 26.087 | 184 | 112 | 7 | 6 | 166 | 10 | 192 | 1.36e-15 | 73.2 |
| MS.gene024238.t1 | AT3G15510 | 32.258 | 124 | 78 | 4 | 14 | 133 | 21 | 142 | 1.49e-15 | 73.6 |
| MS.gene024238.t1 | AT3G15170 | 32.061 | 131 | 83 | 5 | 7 | 133 | 17 | 145 | 1.64e-15 | 73.2 |
| MS.gene024238.t1 | AT3G10480 | 33.088 | 136 | 85 | 5 | 2 | 133 | 19 | 152 | 4.51e-15 | 72.4 |
| MS.gene024238.t1 | AT3G10480 | 33.088 | 136 | 85 | 5 | 2 | 133 | 19 | 152 | 4.55e-15 | 72.4 |
| MS.gene024238.t1 | AT3G10490 | 33.088 | 136 | 85 | 5 | 2 | 133 | 19 | 152 | 7.00e-15 | 72.0 |
| MS.gene024238.t1 | AT1G26870 | 32.576 | 132 | 80 | 6 | 7 | 133 | 14 | 141 | 7.04e-15 | 71.6 |
| MS.gene024238.t1 | AT3G12910 | 33.333 | 135 | 80 | 4 | 13 | 140 | 24 | 155 | 1.08e-14 | 70.5 |
| MS.gene024238.t1 | AT1G34190 | 28.025 | 157 | 104 | 4 | 13 | 161 | 19 | 174 | 1.11e-14 | 71.2 |
| MS.gene024238.t1 | AT1G54330 | 32.331 | 133 | 82 | 4 | 6 | 133 | 2 | 131 | 1.26e-14 | 70.5 |
| MS.gene024238.t1 | AT1G34180 | 28.025 | 157 | 104 | 4 | 13 | 161 | 19 | 174 | 2.26e-14 | 70.5 |
| MS.gene024238.t1 | AT1G34180 | 28.025 | 157 | 104 | 4 | 13 | 161 | 19 | 174 | 3.48e-14 | 69.7 |
| MS.gene024238.t1 | AT4G17980 | 27.389 | 157 | 106 | 4 | 10 | 158 | 6 | 162 | 4.03e-14 | 68.6 |
| MS.gene024238.t1 | AT4G17980 | 27.389 | 157 | 106 | 4 | 10 | 158 | 6 | 162 | 7.31e-14 | 68.2 |
| MS.gene024238.t1 | AT4G36160 | 29.927 | 137 | 91 | 4 | 1 | 133 | 5 | 140 | 1.15e-13 | 68.2 |
| MS.gene024238.t1 | AT4G36160 | 29.927 | 137 | 91 | 4 | 1 | 133 | 1 | 136 | 1.23e-13 | 68.2 |
| MS.gene024238.t1 | AT4G36160 | 29.927 | 137 | 91 | 4 | 1 | 133 | 1 | 136 | 1.23e-13 | 68.2 |
| MS.gene024238.t1 | AT5G64060 | 26.923 | 156 | 105 | 4 | 6 | 153 | 2 | 156 | 2.28e-13 | 67.4 |
| MS.gene024238.t1 | AT5G46590 | 27.607 | 163 | 106 | 4 | 10 | 163 | 6 | 165 | 3.07e-13 | 66.6 |
| MS.gene024238.t1 | AT4G10350 | 30.986 | 142 | 93 | 4 | 4 | 141 | 3 | 143 | 3.28e-13 | 66.6 |
| MS.gene024238.t1 | AT5G66300 | 31.538 | 130 | 84 | 4 | 8 | 133 | 10 | 138 | 3.78e-13 | 66.2 |
| MS.gene024238.t1 | AT1G33060 | 32.283 | 127 | 82 | 4 | 10 | 133 | 24 | 149 | 6.36e-13 | 66.2 |
| MS.gene024238.t1 | AT1G33060 | 32.283 | 127 | 82 | 4 | 10 | 133 | 24 | 149 | 6.74e-13 | 66.2 |
| MS.gene024238.t1 | AT5G14000 | 25.899 | 139 | 93 | 5 | 3 | 136 | 8 | 141 | 9.53e-13 | 63.2 |
| MS.gene024238.t1 | AT4G35580 | 32.283 | 127 | 82 | 3 | 10 | 133 | 9 | 134 | 9.70e-13 | 65.9 |
| MS.gene024238.t1 | AT4G35580 | 32.283 | 127 | 82 | 3 | 10 | 133 | 9 | 134 | 1.40e-12 | 65.5 |
| MS.gene024238.t1 | AT4G35580 | 32.283 | 127 | 82 | 3 | 10 | 133 | 9 | 134 | 1.45e-12 | 65.1 |
| MS.gene024238.t1 | AT5G46590 | 27.559 | 127 | 89 | 2 | 10 | 133 | 6 | 132 | 1.99e-12 | 64.3 |
| MS.gene024238.t1 | AT2G18060 | 30.000 | 130 | 86 | 4 | 8 | 133 | 7 | 135 | 2.86e-12 | 64.3 |
| MS.gene024238.t1 | AT2G18060 | 30.000 | 130 | 86 | 4 | 8 | 133 | 7 | 135 | 2.86e-12 | 64.3 |
| MS.gene024238.t1 | AT5G24590 | 30.709 | 127 | 85 | 2 | 10 | 133 | 13 | 139 | 3.20e-12 | 64.3 |
| MS.gene024238.t1 | AT5G04395 | 27.879 | 165 | 101 | 6 | 1 | 148 | 19 | 182 | 4.45e-12 | 62.0 |
| MS.gene024238.t1 | AT1G56010 | 25.397 | 189 | 122 | 6 | 2 | 174 | 11 | 196 | 4.62e-12 | 63.5 |
| MS.gene024238.t1 | AT5G14000 | 26.087 | 138 | 92 | 5 | 3 | 135 | 8 | 140 | 7.01e-12 | 61.6 |
| MS.gene024238.t1 | AT5G64530 | 30.233 | 129 | 78 | 4 | 8 | 135 | 1 | 118 | 8.63e-12 | 60.5 |
| MS.gene024238.t1 | AT1G71930 | 29.008 | 131 | 88 | 4 | 7 | 133 | 6 | 135 | 8.79e-12 | 62.8 |
| MS.gene024238.t1 | AT1G71930 | 29.008 | 131 | 88 | 4 | 7 | 133 | 6 | 135 | 8.79e-12 | 62.8 |
| MS.gene024238.t1 | AT5G09330 | 28.846 | 156 | 102 | 5 | 6 | 153 | 2 | 156 | 1.24e-11 | 62.4 |
| MS.gene024238.t1 | AT5G09330 | 28.846 | 156 | 102 | 5 | 6 | 153 | 2 | 156 | 1.24e-11 | 62.4 |
| MS.gene024238.t1 | AT5G09330 | 28.846 | 156 | 102 | 5 | 6 | 153 | 2 | 156 | 1.24e-11 | 62.4 |
| MS.gene024238.t1 | AT5G09330 | 28.846 | 156 | 102 | 5 | 6 | 153 | 2 | 156 | 1.24e-11 | 62.4 |
| MS.gene024238.t1 | AT5G09330 | 28.846 | 156 | 102 | 5 | 6 | 153 | 2 | 156 | 1.24e-11 | 62.4 |
| MS.gene024238.t1 | AT1G32870 | 29.412 | 136 | 92 | 3 | 1 | 135 | 39 | 171 | 2.33e-11 | 61.6 |
| MS.gene024238.t1 | AT1G32870 | 29.412 | 136 | 92 | 3 | 1 | 135 | 3 | 135 | 2.52e-11 | 61.6 |
| MS.gene024238.t1 | AT5G64530 | 30.233 | 129 | 78 | 4 | 8 | 135 | 1 | 118 | 2.66e-11 | 59.7 |
| MS.gene024238.t1 | AT1G32870 | 29.412 | 136 | 92 | 3 | 1 | 135 | 3 | 135 | 2.85e-11 | 61.6 |
| MS.gene024238.t1 | AT2G17040 | 30.061 | 163 | 99 | 7 | 7 | 164 | 4 | 156 | 3.89e-11 | 60.5 |
| MS.gene024238.t1 | AT5G22290 | 29.231 | 130 | 87 | 5 | 13 | 139 | 24 | 151 | 4.33e-11 | 60.8 |
| MS.gene024238.t1 | AT5G50820 | 29.630 | 135 | 85 | 3 | 2 | 133 | 9 | 136 | 5.58e-11 | 58.9 |
| MS.gene024238.t1 | AT3G44290 | 27.692 | 130 | 89 | 4 | 13 | 139 | 17 | 144 | 7.42e-11 | 59.3 |
| MS.gene024238.t1 | AT3G44290 | 27.692 | 130 | 89 | 4 | 13 | 139 | 17 | 144 | 9.61e-11 | 59.7 |
| MS.gene024238.t1 | AT1G32770 | 28.571 | 133 | 90 | 4 | 5 | 133 | 11 | 142 | 9.76e-11 | 59.7 |
Find 47 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATCTACCTGCTGGATTC+AGG | 0.237662 | 7.4:+23588587 | MS.gene024238:CDS |
| TGCAGAAAATAGATACTCTT+TGG | 0.273533 | 7.4:+23589016 | MS.gene024238:intron |
| GAACCGTAGGTTCGAGAATA+TGG | 0.296257 | 7.4:+23589070 | MS.gene024238:CDS |
| TCAAATTCTGACATGACATT+TGG | 0.343033 | 7.4:-23588676 | None:intergenic |
| ATTGTATTCCTTACCCTAGT+TGG | 0.360957 | 7.4:-23589272 | None:intergenic |
| GAAAGAACAGATATGTTTAC+TGG | 0.378161 | 7.4:+23589177 | MS.gene024238:CDS |
| ATAGATACTCTTTGGAGAAT+AGG | 0.394512 | 7.4:+23589024 | MS.gene024238:CDS |
| AGTACTATTTCTTTGATCTC+AGG | 0.411387 | 7.4:+23589048 | MS.gene024238:CDS |
| ACAGATATGTTTACTGGATA+GGG | 0.475339 | 7.4:+23589183 | MS.gene024238:CDS |
| TGAGTTCATGGAGAGGGAGG+AGG | 0.476558 | 7.4:-23589535 | None:intergenic |
| TCTGACATGACATTTGGAAA+AGG | 0.488494 | 7.4:-23588670 | None:intergenic |
| ACTGAGCCATGGAGGCTGCC+AGG | 0.492712 | 7.4:+23588709 | MS.gene024238:CDS |
| GAAGAAGGCCACCACACTAA+TGG | 0.494390 | 7.4:+23589492 | MS.gene024238:CDS |
| AACAGATATGTTTACTGGAT+AGG | 0.498598 | 7.4:+23589182 | MS.gene024238:CDS |
| TCAACAAGTACGCGATCGGT+TGG | 0.506848 | 7.4:-23588616 | None:intergenic |
| AAACCTCCTGGCAGCCTCCA+TGG | 0.506870 | 7.4:-23588715 | None:intergenic |
| GAGTTCATGGAGAGGGAGGA+GGG | 0.516664 | 7.4:-23589534 | None:intergenic |
| ATCGGATCTTTAAGATATGA+AGG | 0.521757 | 7.4:+23589456 | MS.gene024238:intron |
| GCTGAGGTTGATCTACCTGC+TGG | 0.528162 | 7.4:+23588580 | MS.gene024238:CDS |
| AATATGGATGCAAGAAGAGC+TGG | 0.531324 | 7.4:+23589086 | MS.gene024238:CDS |
| AGTTCATGGAGAGGGAGGAG+GGG | 0.541559 | 7.4:-23589533 | None:intergenic |
| ATCAAGCTCTGATGACAAGA+TGG | 0.547618 | 7.4:+23589213 | MS.gene024238:CDS |
| ATATATTTCAAACTGAGCCA+TGG | 0.550284 | 7.4:+23588698 | MS.gene024238:CDS |
| TGCATCCTCCATTAGTGTGG+TGG | 0.554338 | 7.4:-23589500 | None:intergenic |
| ACATGACATTTGGAAAAGGT+TGG | 0.561346 | 7.4:-23588666 | None:intergenic |
| CATCCATATTCTCGAACCTA+CGG | 0.563017 | 7.4:-23589073 | None:intergenic |
| TGAAACATGAGTTCATGGAG+AGG | 0.563520 | 7.4:-23589542 | None:intergenic |
| GTAGAATTTCTGATCCAACT+AGG | 0.564430 | 7.4:+23589258 | MS.gene024238:CDS |
| GATGCAAGAAGAGCTGGAAA+TGG | 0.566075 | 7.4:+23589092 | MS.gene024238:CDS |
| GGTGGCAAAAGATGAGAAGA+AGG | 0.572725 | 7.4:+23589477 | MS.gene024238:CDS |
| TCTTTGATCTCAGGAACCGT+AGG | 0.573721 | 7.4:+23589057 | MS.gene024238:CDS |
| GAAGAGCTGGAAATGGTGAA+TGG | 0.577138 | 7.4:+23589099 | MS.gene024238:CDS |
| GGATCAAACCTGAATCCAGC+AGG | 0.578674 | 7.4:-23588595 | None:intergenic |
| TAGAATTTCTGATCCAACTA+GGG | 0.584601 | 7.4:+23589259 | MS.gene024238:CDS |
| GCGAATAGTTCAAAGGAATG+AGG | 0.587265 | 7.4:+23589121 | MS.gene024238:CDS |
| GTGAATGGCGAATAGTTCAA+AGG | 0.604587 | 7.4:+23589114 | MS.gene024238:CDS |
| ACATGAGTTCATGGAGAGGG+AGG | 0.614894 | 7.4:-23589538 | None:intergenic |
| GCACTCAACAAGTACGCGAT+CGG | 0.627245 | 7.4:-23588620 | None:intergenic |
| GAAACATGAGTTCATGGAGA+GGG | 0.632009 | 7.4:-23589541 | None:intergenic |
| GAAGGCCACCACACTAATGG+AGG | 0.652157 | 7.4:+23589495 | MS.gene024238:CDS |
| AAGCTCTGATGACAAGATGG+TGG | 0.668891 | 7.4:+23589216 | MS.gene024238:CDS |
| TATTTCAAACTGAGCCATGG+AGG | 0.675314 | 7.4:+23588701 | MS.gene024238:CDS |
| ACTTGCATCCTCCATTAGTG+TGG | 0.678198 | 7.4:-23589503 | None:intergenic |
| GAGCCATGGAGGCTGCCAGG+AGG | 0.693460 | 7.4:+23588712 | MS.gene024238:CDS |
| CATGGCGGTAGCTAATGCTG+AGG | 0.695855 | 7.4:+23588564 | None:intergenic |
| TGGATGCATGAATTTGTCAT+CGG | 0.708626 | 7.4:+23589236 | MS.gene024238:CDS |
| GGATCTTTAAGATATGAAGG+TGG | 0.724453 | 7.4:+23589459 | MS.gene024238:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATTGATTTATTCATTT+TGG | + | chr7.4:23588964-23588983 | MS.gene024238:intron | 15.0% |
| !!! | CAAATTGATTTATTCATTTT+GGG | + | chr7.4:23588965-23588984 | MS.gene024238:intron | 15.0% |
| !! | TCATAAAGAAAGAGAATAAA+GGG | - | chr7.4:23588781-23588800 | None:intergenic | 20.0% |
| !! | TTGAACTCAAATTAAATGTA+GGG | + | chr7.4:23589416-23589435 | MS.gene024238:intron | 20.0% |
| !! | TTTATTGATAAAACACACAA+TGG | - | chr7.4:23588804-23588823 | None:intergenic | 20.0% |
| !! | TTTGAACTCAAATTAAATGT+AGG | + | chr7.4:23589415-23589434 | MS.gene024238:intron | 20.0% |
| !!! | AAAAATTTTGATAGTGATAG+TGG | - | chr7.4:23589303-23589322 | None:intergenic | 20.0% |
| !!! | CTTATATGATGTTTTTATGT+GGG | + | chr7.4:23588933-23588952 | MS.gene024238:intron | 20.0% |
| !!! | TATCACTATCAAAATTTTTG+AGG | + | chr7.4:23589304-23589323 | MS.gene024238:intron | 20.0% |
| ! | AACATCATATAAGCATTTCA+TGG | - | chr7.4:23588926-23588945 | None:intergenic | 25.0% |
| ! | GTCATAAAGAAAGAGAATAA+AGG | - | chr7.4:23588782-23588801 | None:intergenic | 25.0% |
| ! | TGAACTCAAATTAAATGTAG+GGG | + | chr7.4:23589417-23589436 | MS.gene024238:intron | 25.0% |
| !! | ATTTTCTTAGTGTTCTTTGA+TGG | + | chr7.4:23588830-23588849 | MS.gene024238:intron | 25.0% |
| !!! | GCTTATATGATGTTTTTATG+TGG | + | chr7.4:23588932-23588951 | MS.gene024238:intron | 25.0% |
| AACAGATATGTTTACTGGAT+AGG | + | chr7.4:23589182-23589201 | MS.gene024238:CDS | 30.0% | |
| ACAGATATGTTTACTGGATA+GGG | + | chr7.4:23589183-23589202 | MS.gene024238:CDS | 30.0% | |
| ATATATTTCAAACTGAGCCA+TGG | + | chr7.4:23588698-23588717 | MS.gene024238:CDS | 30.0% | |
| GAAAGAACAGATATGTTTAC+TGG | + | chr7.4:23589177-23589196 | MS.gene024238:CDS | 30.0% | |
| TAGAATTTCTGATCCAACTA+GGG | + | chr7.4:23589259-23589278 | MS.gene024238:CDS | 30.0% | |
| TCAAATTCTGACATGACATT+TGG | - | chr7.4:23588679-23588698 | None:intergenic | 30.0% | |
| TCATATCTTAAAGATCCGAT+AGG | - | chr7.4:23589456-23589475 | None:intergenic | 30.0% | |
| TGCAGAAAATAGATACTCTT+TGG | + | chr7.4:23589016-23589035 | MS.gene024238:intron | 30.0% | |
| ! | AGTACTATTTCTTTGATCTC+AGG | + | chr7.4:23589048-23589067 | MS.gene024238:CDS | 30.0% |
| ! | ATAGATACTCTTTGGAGAAT+AGG | + | chr7.4:23589024-23589043 | MS.gene024238:CDS | 30.0% |
| !! | ATCGGATCTTTAAGATATGA+AGG | + | chr7.4:23589456-23589475 | MS.gene024238:intron | 30.0% |
| ACATGACATTTGGAAAAGGT+TGG | - | chr7.4:23588669-23588688 | None:intergenic | 35.0% | |
| ATTGTATTCCTTACCCTAGT+TGG | - | chr7.4:23589275-23589294 | None:intergenic | 35.0% | |
| GTAGAATTTCTGATCCAACT+AGG | + | chr7.4:23589258-23589277 | MS.gene024238:CDS | 35.0% | |
| TCTGACATGACATTTGGAAA+AGG | - | chr7.4:23588673-23588692 | None:intergenic | 35.0% | |
| TGGATGCATGAATTTGTCAT+CGG | + | chr7.4:23589236-23589255 | MS.gene024238:CDS | 35.0% | |
| TTGTGTCTTAGACATGCAAT+TGG | + | chr7.4:23588879-23588898 | MS.gene024238:intron | 35.0% | |
| ! | GGTTGTATATTTTCTTCGTC+AGG | - | chr7.4:23588648-23588667 | None:intergenic | 35.0% |
| !! | GGATCTTTAAGATATGAAGG+TGG | + | chr7.4:23589459-23589478 | MS.gene024238:intron | 35.0% |
| AATATGGATGCAAGAAGAGC+TGG | + | chr7.4:23589086-23589105 | MS.gene024238:CDS | 40.0% | |
| CATCCATATTCTCGAACCTA+CGG | - | chr7.4:23589076-23589095 | None:intergenic | 40.0% | |
| GCGAATAGTTCAAAGGAATG+AGG | + | chr7.4:23589121-23589140 | MS.gene024238:CDS | 40.0% | |
| GTCTTAGACATGCAATTGGA+GGG | + | chr7.4:23588883-23588902 | MS.gene024238:intron | 40.0% | |
| GTGAATGGCGAATAGTTCAA+AGG | + | chr7.4:23589114-23589133 | MS.gene024238:CDS | 40.0% | |
| TATTTCAAACTGAGCCATGG+AGG | + | chr7.4:23588701-23588720 | MS.gene024238:CDS | 40.0% | |
| TCTTAGACATGCAATTGGAG+GGG | + | chr7.4:23588884-23588903 | MS.gene024238:intron | 40.0% | |
| TGTCTTAGACATGCAATTGG+AGG | + | chr7.4:23588882-23588901 | MS.gene024238:intron | 40.0% | |
| TTTCTGATCCAACTAGGGTA+AGG | + | chr7.4:23589264-23589283 | MS.gene024238:intron | 40.0% | |
| ! | ATCAAGCTCTGATGACAAGA+TGG | + | chr7.4:23589213-23589232 | MS.gene024238:CDS | 40.0% |
| ! | GTTTTCTTTCACAAACCTCC+TGG | - | chr7.4:23588730-23588749 | None:intergenic | 40.0% |
| AAGATCCGATAGGCAGCTAT+AGG | - | chr7.4:23589446-23589465 | None:intergenic | 45.0% | |
| ACTTGCATCCTCCATTAGTG+TGG | - | chr7.4:23589506-23589525 | None:intergenic | 45.0% | |
| GAACCGTAGGTTCGAGAATA+TGG | + | chr7.4:23589070-23589089 | MS.gene024238:CDS | 45.0% | |
| GAAGAGCTGGAAATGGTGAA+TGG | + | chr7.4:23589099-23589118 | MS.gene024238:CDS | 45.0% | |
| GATGCAAGAAGAGCTGGAAA+TGG | + | chr7.4:23589092-23589111 | MS.gene024238:CDS | 45.0% | |
| GGTGGCAAAAGATGAGAAGA+AGG | + | chr7.4:23589477-23589496 | MS.gene024238:CDS | 45.0% | |
| TCTTTGATCTCAGGAACCGT+AGG | + | chr7.4:23589057-23589076 | MS.gene024238:CDS | 45.0% | |
| TTGATCTACCTGCTGGATTC+AGG | + | chr7.4:23588587-23588606 | MS.gene024238:CDS | 45.0% | |
| ! | AAGCTCTGATGACAAGATGG+TGG | + | chr7.4:23589216-23589235 | MS.gene024238:CDS | 45.0% |
| GAAGAAGGCCACCACACTAA+TGG | + | chr7.4:23589492-23589511 | MS.gene024238:CDS | 50.0% | |
| GCACTCAACAAGTACGCGAT+CGG | - | chr7.4:23588623-23588642 | None:intergenic | 50.0% | |
| GGATCAAACCTGAATCCAGC+AGG | - | chr7.4:23588598-23588617 | None:intergenic | 50.0% | |
| GGTCACCTATAGCTGCCTAT+CGG | + | chr7.4:23589438-23589457 | MS.gene024238:intron | 50.0% | |
| TAGACATGCAATTGGAGGGG+AGG | + | chr7.4:23588887-23588906 | MS.gene024238:intron | 50.0% | |
| TCAACAAGTACGCGATCGGT+TGG | - | chr7.4:23588619-23588638 | None:intergenic | 50.0% | |
| TGCATCCTCCATTAGTGTGG+TGG | - | chr7.4:23589503-23589522 | None:intergenic | 50.0% | |
| GAAGGCCACCACACTAATGG+AGG | + | chr7.4:23589495-23589514 | MS.gene024238:CDS | 55.0% | |
| ! | GCTGAGGTTGATCTACCTGC+TGG | + | chr7.4:23588580-23588599 | MS.gene024238:CDS | 55.0% |
| AAACCTCCTGGCAGCCTCCA+TGG | - | chr7.4:23588718-23588737 | None:intergenic | 60.0% | |
| ACTGAGCCATGGAGGCTGCC+AGG | + | chr7.4:23588709-23588728 | MS.gene024238:CDS | 65.0% | |
| GAGCCATGGAGGCTGCCAGG+AGG | + | chr7.4:23588712-23588731 | MS.gene024238:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 23588565 | 23589552 | 23588565 | ID=MS.gene024238 |
| chr7.4 | mRNA | 23588565 | 23589552 | 23588565 | ID=MS.gene024238.t1;Parent=MS.gene024238 |
| chr7.4 | exon | 23588565 | 23588733 | 23588565 | ID=MS.gene024238.t1.exon1;Parent=MS.gene024238.t1 |
| chr7.4 | CDS | 23588565 | 23588733 | 23588565 | ID=cds.MS.gene024238.t1;Parent=MS.gene024238.t1 |
| chr7.4 | exon | 23589021 | 23589280 | 23589021 | ID=MS.gene024238.t1.exon2;Parent=MS.gene024238.t1 |
| chr7.4 | CDS | 23589021 | 23589280 | 23589021 | ID=cds.MS.gene024238.t1;Parent=MS.gene024238.t1 |
| chr7.4 | exon | 23589365 | 23589386 | 23589365 | ID=MS.gene024238.t1.exon3;Parent=MS.gene024238.t1 |
| chr7.4 | CDS | 23589365 | 23589386 | 23589365 | ID=cds.MS.gene024238.t1;Parent=MS.gene024238.t1 |
| chr7.4 | exon | 23589470 | 23589552 | 23589470 | ID=MS.gene024238.t1.exon4;Parent=MS.gene024238.t1 |
| chr7.4 | CDS | 23589470 | 23589552 | 23589470 | ID=cds.MS.gene024238.t1;Parent=MS.gene024238.t1 |
| Gene Sequence |
| Protein sequence |
