AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024239

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024239.t1 MTR_7g083360 71.613 155 43 1 1 155 1 154 7.18e-80 233
MS.gene024239.t1 MTR_7g083370 77.778 135 30 0 1 135 1 135 2.31e-77 226
MS.gene024239.t1 MTR_7g083330 71.242 153 44 0 3 155 11 163 2.40e-77 228
MS.gene024239.t1 MTR_2157s0010 31.469 143 91 4 3 140 1 141 3.82e-20 84.3
MS.gene024239.t1 MTR_7g085220 31.884 138 81 4 10 136 8 143 1.61e-19 83.6
MS.gene024239.t1 MTR_2g064090 32.317 164 92 7 6 157 2 158 4.40e-19 82.4
MS.gene024239.t1 MTR_4g081870 29.412 153 100 5 4 153 3 150 4.77e-19 81.3
MS.gene024239.t1 MTR_3g088110 33.588 131 80 4 6 133 3 129 5.55e-19 81.6
MS.gene024239.t1 MTR_5g041940 30.201 149 96 5 8 153 1 144 8.69e-19 80.5
MS.gene024239.t1 MTR_7g005280 32.394 142 87 5 5 142 10 146 9.98e-19 80.5
MS.gene024239.t1 MTR_4g089135 33.333 144 88 5 10 147 15 156 1.11e-18 81.3
MS.gene024239.t1 MTR_8g094580 33.333 129 79 4 8 133 5 129 3.34e-18 79.3
MS.gene024239.t1 MTR_7g100990 32.639 144 87 5 6 141 7 148 9.52e-18 78.6
MS.gene024239.t1 MTR_2g093810 30.935 139 90 4 4 138 8 144 1.19e-17 78.2
MS.gene024239.t1 MTR_5g090970 35.338 133 76 6 7 133 16 144 1.65e-17 77.8
MS.gene024239.t1 MTR_5g040420 32.847 137 85 5 7 139 12 145 2.13e-17 78.2
MS.gene024239.t1 MTR_6g011860 31.333 150 95 5 1 145 7 153 2.54e-17 77.8
MS.gene024239.t1 MTR_2g080010 33.594 128 79 4 10 133 15 140 3.39e-17 77.4
MS.gene024239.t1 MTR_5g090970 35.338 133 75 6 7 133 16 143 3.71e-17 76.6
MS.gene024239.t1 MTR_6g477900 34.646 127 79 3 10 133 6 131 4.80e-17 75.5
MS.gene024239.t1 MTR_3g070030 31.293 147 92 5 3 143 12 155 5.81e-17 76.6
MS.gene024239.t1 MTR_8g467490 32.847 137 85 5 7 139 12 145 1.45e-16 75.9
MS.gene024239.t1 MTR_3g096920 32.836 134 77 5 6 133 3 129 1.46e-16 75.1
MS.gene024239.t1 MTR_6g012670 31.884 138 88 4 4 138 14 148 1.53e-16 75.1
MS.gene024239.t1 MTR_2g068880 33.094 139 85 5 7 139 20 156 1.54e-16 75.1
MS.gene024239.t1 MTR_2g068920 32.639 144 89 5 2 139 14 155 1.57e-16 74.7
MS.gene024239.t1 MTR_8g059170 29.221 154 93 6 6 153 10 153 1.61e-16 75.1
MS.gene024239.t1 MTR_3g096920 32.836 134 77 5 6 133 3 129 2.11e-16 75.1
MS.gene024239.t1 MTR_6g032770 30.769 143 90 5 8 143 16 156 2.32e-16 75.1
MS.gene024239.t1 MTR_8g099750 29.496 139 90 4 3 137 7 141 3.17e-16 73.2
MS.gene024239.t1 MTR_3g064580 31.447 159 102 5 6 158 2 159 3.52e-16 75.1
MS.gene024239.t1 MTR_6g084430 29.139 151 101 5 10 157 5 152 3.93e-16 74.3
MS.gene024239.t1 MTR_5g076850 33.588 131 83 3 6 133 2 131 4.76e-16 74.7
MS.gene024239.t1 MTR_1g008740 32.117 137 84 5 7 137 10 143 6.70e-16 73.6
MS.gene024239.t1 MTR_2g078700 31.250 128 82 5 10 133 23 148 6.77e-16 73.9
MS.gene024239.t1 MTR_1g008740 32.117 137 84 5 7 137 24 157 7.12e-16 73.6
MS.gene024239.t1 MTR_1g096430 29.747 158 102 5 7 158 4 158 1.22e-15 72.8
MS.gene024239.t1 MTR_2g079990 30.147 136 89 4 6 138 12 144 1.61e-15 72.8
MS.gene024239.t1 MTR_2g079990 30.147 136 89 4 6 138 12 144 1.87e-15 72.8
MS.gene024239.t1 MTR_3g109340 30.323 155 102 4 7 157 19 171 2.15e-15 72.4
MS.gene024239.t1 MTR_3g116070 30.657 137 86 5 10 141 23 155 2.81e-15 72.0
MS.gene024239.t1 MTR_3g435150 27.673 159 103 7 7 157 13 167 3.98e-15 71.2
MS.gene024239.t1 MTR_1g090723 32.450 151 94 7 13 157 11 159 4.48e-15 71.6
MS.gene024239.t1 MTR_1g090723 32.450 151 94 7 13 157 11 159 4.60e-15 71.6
MS.gene024239.t1 MTR_3g109340 31.111 135 87 4 7 137 19 151 5.68e-15 71.2
MS.gene024239.t1 MTR_7g085260 32.576 132 81 5 8 133 15 144 7.61e-15 70.9
MS.gene024239.t1 MTR_5g021710 30.519 154 100 5 7 155 5 156 7.89e-15 70.9
MS.gene024239.t1 MTR_3g093050 33.071 127 81 3 10 133 22 147 1.06e-14 70.9
MS.gene024239.t1 MTR_4g036030 28.667 150 102 4 10 155 7 155 1.06e-14 70.5
MS.gene024239.t1 MTR_3g093050 33.071 127 81 3 10 133 22 147 1.49e-14 70.5
MS.gene024239.t1 MTR_1g090723 32.237 152 94 7 13 157 11 160 1.99e-14 70.1
MS.gene024239.t1 MTR_4g108760 27.500 160 104 7 7 158 14 169 2.33e-14 69.3
MS.gene024239.t1 MTR_1g069805 31.333 150 94 6 1 145 1 146 3.13e-14 68.6
MS.gene024239.t1 MTR_1g097300 29.333 150 100 4 13 157 22 170 3.49e-14 69.3
MS.gene024239.t1 MTR_1g090720 32.031 128 81 4 10 133 42 167 3.69e-14 68.9
MS.gene024239.t1 MTR_2g086880 31.884 138 87 7 1 135 11 144 4.73e-14 68.9
MS.gene024239.t1 MTR_2g086880 31.884 138 87 7 1 135 11 144 4.83e-14 68.9
MS.gene024239.t1 MTR_5g069030 33.858 127 80 3 10 133 25 150 4.93e-14 68.9
MS.gene024239.t1 MTR_3g098810 29.078 141 90 4 3 137 7 143 7.22e-14 65.9
MS.gene024239.t1 MTR_3g093040 31.008 129 85 3 8 133 106 233 1.27e-13 67.0
MS.gene024239.t1 MTR_8g023880 28.671 143 80 4 10 133 7 146 1.43e-13 66.6
MS.gene024239.t1 MTR_8g076110 27.564 156 108 4 7 158 3 157 1.66e-13 66.6
MS.gene024239.t1 MTR_3g098810 29.078 141 90 4 3 137 7 143 2.06e-13 65.9
MS.gene024239.t1 MTR_7g097090 31.126 151 93 6 1 145 1 146 3.32e-13 65.9
MS.gene024239.t1 MTR_5g014300 28.387 155 101 4 10 155 6 159 3.39e-13 65.9
MS.gene024239.t1 MTR_0036s0150 30.625 160 85 8 13 157 8 156 3.68e-13 66.2
MS.gene024239.t1 MTR_5g012080 28.906 128 87 3 10 133 7 134 3.86e-13 65.9
MS.gene024239.t1 MTR_4g101680 27.815 151 102 5 10 155 7 155 5.79e-13 65.5
MS.gene024239.t1 MTR_2g064470 29.787 141 81 6 3 135 4 134 6.00e-13 65.1
MS.gene024239.t1 MTR_2g062730 27.044 159 112 3 1 155 1 159 8.81e-13 65.1
MS.gene024239.t1 MTR_8g023900 28.966 145 97 4 9 148 11 154 1.20e-12 64.7
MS.gene024239.t1 MTR_7g011120 29.545 132 87 4 5 133 3 131 1.44e-12 64.3
MS.gene024239.t1 MTR_4g134460 26.316 152 106 4 7 155 52 200 2.04e-12 63.9
MS.gene024239.t1 MTR_4g098630 25.490 153 107 4 10 155 6 158 9.65e-12 62.0
MS.gene024239.t1 MTR_8g023840 31.008 129 83 5 10 133 11 138 2.98e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024239.t1 AT5G13180 37.037 135 76 5 3 133 7 136 1.20e-20 85.5
MS.gene024239.t1 AT2G33480 33.582 134 80 4 8 138 13 140 6.86e-20 83.6
MS.gene024239.t1 AT2G33480 33.582 134 80 4 8 138 13 140 7.71e-20 83.6
MS.gene024239.t1 AT2G43000 35.897 156 88 8 7 155 16 166 1.40e-19 82.8
MS.gene024239.t1 AT3G03200 33.758 157 95 5 6 155 2 156 5.94e-19 82.8
MS.gene024239.t1 AT1G61110 34.646 127 78 4 10 133 16 140 1.18e-18 81.3
MS.gene024239.t1 AT1G77450 33.088 136 84 4 1 133 1 132 2.03e-18 79.3
MS.gene024239.t1 AT5G39820 32.168 143 88 6 7 143 18 157 2.16e-18 80.5
MS.gene024239.t1 AT5G63790 32.824 131 81 4 6 133 46 172 3.95e-18 79.7
MS.gene024239.t1 AT5G63790 32.824 131 81 4 6 133 56 182 3.96e-18 79.7
MS.gene024239.t1 AT1G76420 33.594 128 79 4 10 133 22 147 4.96e-18 79.3
MS.gene024239.t1 AT5G08790 31.818 132 83 4 5 133 2 129 7.92e-18 78.2
MS.gene024239.t1 AT1G65910 32.824 131 84 3 6 133 2 131 1.21e-17 79.3
MS.gene024239.t1 AT3G10500 33.846 130 82 4 10 136 9 137 1.29e-17 79.0
MS.gene024239.t1 AT1G69490 32.090 134 83 5 4 133 3 132 1.61e-17 77.4
MS.gene024239.t1 AT3G17730 34.615 130 83 2 6 133 2 131 1.98e-17 76.6
MS.gene024239.t1 AT5G18270 33.071 127 80 4 10 133 21 145 2.20e-17 77.8
MS.gene024239.t1 AT5G17260 31.210 157 99 5 6 155 2 156 2.65e-17 78.2
MS.gene024239.t1 AT1G26870 34.091 132 78 6 7 133 14 141 3.32e-17 77.8
MS.gene024239.t1 AT3G04070 29.927 137 87 4 10 139 10 144 3.93e-17 77.0
MS.gene024239.t1 AT3G04070 29.927 137 87 4 10 139 10 144 5.46e-17 77.0
MS.gene024239.t1 AT3G15170 31.298 131 84 5 7 133 17 145 9.67e-17 75.9
MS.gene024239.t1 AT2G24430 28.846 156 104 5 7 157 13 166 9.97e-17 75.9
MS.gene024239.t1 AT2G24430 28.846 156 104 5 7 157 13 166 9.97e-17 75.9
MS.gene024239.t1 AT5G18270 32.283 127 81 4 10 133 21 145 1.34e-16 75.5
MS.gene024239.t1 AT5G53950 32.812 128 80 5 10 133 17 142 1.44e-16 75.9
MS.gene024239.t1 AT5G04410 30.709 127 84 3 10 133 9 134 1.78e-16 75.9
MS.gene024239.t1 AT3G04060 30.709 127 83 4 10 133 20 144 2.89e-16 74.7
MS.gene024239.t1 AT3G12910 35.338 133 75 5 8 133 20 148 2.94e-16 74.3
MS.gene024239.t1 AT3G15500 32.836 134 84 4 6 136 10 140 2.96e-16 74.3
MS.gene024239.t1 AT1G01720 32.576 132 81 5 6 133 2 129 3.79e-16 73.9
MS.gene024239.t1 AT3G15510 32.283 127 80 4 14 136 21 145 4.78e-16 74.3
MS.gene024239.t1 AT1G52890 32.090 134 85 4 6 136 10 140 6.81e-16 73.6
MS.gene024239.t1 AT4G27410 29.747 158 103 5 6 158 10 164 7.74e-16 73.2
MS.gene024239.t1 AT3G10490 30.935 139 90 4 2 136 19 155 9.62e-16 72.0
MS.gene024239.t1 AT1G33060 33.858 127 80 4 10 133 24 149 1.08e-15 73.6
MS.gene024239.t1 AT5G07680 31.061 132 85 5 5 133 12 140 1.14e-15 72.8
MS.gene024239.t1 AT3G29035 30.065 153 95 6 10 154 24 172 1.23e-15 72.8
MS.gene024239.t1 AT2G27300 31.875 160 97 8 1 157 7 157 1.27e-15 72.8
MS.gene024239.t1 AT1G33060 33.858 127 80 4 10 133 24 149 1.30e-15 73.6
MS.gene024239.t1 AT5G07680 31.496 127 81 4 10 133 3 126 1.30e-15 72.8
MS.gene024239.t1 AT1G54330 32.075 159 91 5 6 155 2 152 1.53e-15 72.4
MS.gene024239.t1 AT5G39610 32.283 127 80 5 10 133 20 143 1.62e-15 72.0
MS.gene024239.t1 AT5G62380 29.801 151 99 5 10 155 7 155 2.65e-15 72.0
MS.gene024239.t1 AT5G62380 29.801 151 99 5 10 155 7 155 2.65e-15 72.0
MS.gene024239.t1 AT3G18400 28.758 153 102 6 10 158 5 154 2.86e-15 71.6
MS.gene024239.t1 AT4G36160 29.375 160 106 5 1 155 1 158 3.47e-15 72.0
MS.gene024239.t1 AT4G36160 29.375 160 106 5 1 155 1 158 3.47e-15 72.0
MS.gene024239.t1 AT4G36160 29.375 160 106 5 1 155 5 162 3.69e-15 72.0
MS.gene024239.t1 AT5G46590 26.000 150 108 2 9 155 5 154 5.59e-15 70.9
MS.gene024239.t1 AT5G61430 30.769 130 84 5 7 133 13 139 5.85e-15 70.9
MS.gene024239.t1 AT4G35580 34.646 127 79 4 10 133 9 134 7.13e-15 71.2
MS.gene024239.t1 AT4G35580 34.646 127 79 4 10 133 9 134 7.21e-15 71.2
MS.gene024239.t1 AT4G35580 34.646 127 79 4 10 133 9 134 7.42e-15 71.2
MS.gene024239.t1 AT3G10490 30.935 139 90 4 2 136 19 155 9.66e-15 70.9
MS.gene024239.t1 AT3G10480 30.216 139 91 4 2 136 19 155 1.30e-14 70.5
MS.gene024239.t1 AT3G10480 30.216 139 91 4 2 136 19 155 1.36e-14 70.5
MS.gene024239.t1 AT3G44290 32.283 127 81 4 13 136 17 141 1.43e-14 68.9
MS.gene024239.t1 AT1G71930 28.667 150 102 4 10 155 9 157 1.51e-14 69.7
MS.gene024239.t1 AT1G71930 28.667 150 102 4 10 155 9 157 1.51e-14 69.7
MS.gene024239.t1 AT5G46590 28.906 128 88 2 9 133 5 132 2.63e-14 68.9
MS.gene024239.t1 AT4G17980 27.097 155 105 4 9 155 5 159 4.84e-14 67.8
MS.gene024239.t1 AT3G12977 28.472 144 95 5 2 141 10 149 4.93e-14 68.2
MS.gene024239.t1 AT3G44290 32.283 127 81 4 13 136 17 141 5.09e-14 68.6
MS.gene024239.t1 AT1G56010 29.655 145 94 5 2 142 11 151 5.87e-14 68.2
MS.gene024239.t1 AT1G34180 32.308 130 72 4 13 133 19 141 6.01e-14 68.6
MS.gene024239.t1 AT4G17980 27.097 155 105 4 9 155 5 159 7.88e-14 67.4
MS.gene024239.t1 AT5G22290 30.657 137 89 5 2 135 14 147 9.99e-14 67.8
MS.gene024239.t1 AT1G79580 27.941 136 94 3 2 133 9 144 1.07e-13 67.8
MS.gene024239.t1 AT1G79580 27.941 136 94 3 2 133 9 144 1.07e-13 67.8
MS.gene024239.t1 AT1G79580 27.941 136 94 3 2 133 9 144 1.07e-13 67.8
MS.gene024239.t1 AT1G79580 27.941 136 94 3 2 133 9 144 1.07e-13 67.8
MS.gene024239.t1 AT1G79580 27.941 136 94 3 2 133 9 144 1.07e-13 67.8
MS.gene024239.t1 AT2G18060 29.801 151 99 5 10 155 9 157 1.08e-13 67.8
MS.gene024239.t1 AT2G18060 29.801 151 99 5 10 155 9 157 1.08e-13 67.8
MS.gene024239.t1 AT5G66300 29.801 151 100 5 10 155 12 161 1.20e-13 67.0
MS.gene024239.t1 AT1G34190 29.114 158 90 6 13 157 19 167 1.37e-13 67.4
MS.gene024239.t1 AT1G34180 31.818 132 74 4 13 135 19 143 2.67e-13 66.6
MS.gene024239.t1 AT1G12260 27.333 150 104 4 10 155 7 155 3.09e-13 66.2
MS.gene024239.t1 AT5G24590 31.496 127 84 2 10 133 13 139 4.25e-13 66.2
MS.gene024239.t1 AT1G12260 27.333 150 104 4 10 155 7 155 4.26e-13 65.9
MS.gene024239.t1 AT5G50820 28.395 162 101 4 2 155 9 163 1.16e-12 63.2
MS.gene024239.t1 AT5G14000 28.058 139 88 6 3 135 8 140 1.22e-12 62.4
MS.gene024239.t1 AT2G02450 25.828 151 106 4 8 155 50 197 1.46e-12 64.3
MS.gene024239.t1 AT2G02450 25.828 151 106 4 8 155 50 197 2.00e-12 63.9
MS.gene024239.t1 AT5G04395 29.605 152 89 6 1 135 19 169 2.14e-12 62.4
MS.gene024239.t1 AT5G14000 28.058 139 88 6 3 135 8 140 3.40e-12 62.0
MS.gene024239.t1 AT4G28530 28.758 153 87 4 1 133 1 151 4.41e-12 63.2
MS.gene024239.t1 AT5G09330 33.858 127 80 4 10 133 6 131 4.60e-12 63.2
MS.gene024239.t1 AT5G09330 33.858 127 80 4 10 133 6 131 4.60e-12 63.2
MS.gene024239.t1 AT5G09330 33.858 127 80 4 10 133 6 131 4.60e-12 63.2
MS.gene024239.t1 AT5G09330 33.858 127 80 4 10 133 6 131 4.60e-12 63.2
MS.gene024239.t1 AT5G09330 33.858 127 80 4 10 133 6 131 4.60e-12 63.2
MS.gene024239.t1 AT3G44350 29.630 135 89 3 10 138 5 139 2.96e-11 58.5
MS.gene024239.t1 AT1G32870 29.299 157 97 4 10 157 10 161 4.74e-11 60.1
MS.gene024239.t1 AT1G32870 29.299 157 97 4 10 157 46 197 4.94e-11 60.1
MS.gene024239.t1 AT1G32870 29.299 157 97 4 10 157 10 161 5.25e-11 60.1
MS.gene024239.t1 AT1G32510 28.358 134 87 3 9 133 5 138 5.63e-11 59.7
MS.gene024239.t1 AT1G52880 29.365 126 81 4 14 133 21 144 7.93e-11 59.3

Find 34 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGAACACATTTGTTTAC+TGG 0.271032 7.4:+23582977 MS.gene024239:CDS
AGTACTATTTCTTTGATATC+AGG 0.279804 7.4:+23582848 MS.gene024239:CDS
AGGTGCCTATCGGATATTTA+AGG 0.283056 7.4:+23583292 MS.gene024239:CDS
GAACCGTAGATTCGAGAATA+TGG 0.360249 7.4:+23582870 MS.gene024239:CDS
ATTGTATTCATTACCCTAGC+TGG 0.431951 7.4:-23583075 None:intergenic
ACACATTTGTTTACTGGATA+GGG 0.438722 7.4:+23582983 MS.gene024239:CDS
GGATCAAACTTGTATCCAAC+AGG 0.462546 7.4:-23582335 None:intergenic
GCTGAGCTTCTTCTACCTGT+TGG 0.469612 7.4:+23582320 MS.gene024239:CDS
AACACATTTGTTTACTGGAT+AGG 0.480417 7.4:+23582982 MS.gene024239:CDS
AAACCTCTTGGCAGCCTCCA+TGG 0.486538 7.4:-23582455 None:intergenic
GAAGAGCTGGAGATGGTGAA+TGG 0.497231 7.4:+23582899 MS.gene024239:CDS
CATCCATATTCTCGAATCTA+CGG 0.497709 7.4:-23582873 None:intergenic
TCGAATTCAAACAAGTGAGT+TGG 0.514689 7.4:-23582416 None:intergenic
AATATGGATGCAAGAAGAGC+TGG 0.523452 7.4:+23582886 MS.gene024239:CDS
CTTGTTGAGTACTACCTGAC+GGG 0.535841 7.4:+23582371 MS.gene024239:CDS
TTTGTTTACTGGATAGGGCA+AGG 0.546149 7.4:+23582988 MS.gene024239:CDS
GTGAATGGAGAATAGTTGAA+TGG 0.546179 7.4:+23582914 MS.gene024239:CDS
GTACAATTCATCATCCAGCT+AGG 0.552549 7.4:+23583061 MS.gene024239:CDS
TCAACAAGCTCGTGATCAGT+TGG 0.555838 7.4:-23582356 None:intergenic
TCAAACAAGTGAGTTGGAAG+AGG 0.558737 7.4:-23582410 None:intergenic
GAGAATAGTTGAATGGAATG+AGG 0.563671 7.4:+23582921 MS.gene024239:CDS
ATGTGTTTCAAACTGAGCCA+TGG 0.569635 7.4:+23582438 MS.gene024239:CDS
TACAATTCATCATCCAGCTA+GGG 0.576583 7.4:+23583062 MS.gene024239:CDS
AGACAGCTGTAGGTGCCTAT+CGG 0.582547 7.4:+23583282 MS.gene024239:CDS
GCTTGTTGAGTACTACCTGA+CGG 0.620029 7.4:+23582370 MS.gene024239:CDS
GATGCAAGAAGAGCTGGAGA+TGG 0.639988 7.4:+23582892 MS.gene024239:CDS
TCATACCTTAAATATCCGAT+AGG 0.640099 7.4:-23583297 None:intergenic
TCAATGTAGGAGACAGCTGT+AGG 0.645111 7.4:+23583272 MS.gene024239:intron
ACAAGTGAGTTGGAAGAGGT+AGG 0.647632 7.4:-23582406 None:intergenic
ATCAAGCTCTGATGACACAA+TGG 0.656016 7.4:+23583013 MS.gene024239:CDS
GAGCCATGGAGGCTGCCAAG+AGG 0.670912 7.4:+23582452 MS.gene024239:CDS
TTGTTGAGTACTACCTGACG+GGG 0.672691 7.4:+23582372 MS.gene024239:CDS
AAGCTCTGATGACACAATGG+TGG 0.675163 7.4:+23583016 MS.gene024239:CDS
TGTTTCAAACTGAGCCATGG+AGG 0.716472 7.4:+23582441 MS.gene024239:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCTTATCATTATTTAAT+AGG - chr7.4:23584401-23584420 None:intergenic 10.0%
!! AATACCAATTTAATAATATA+TGG + chr7.4:23583634-23583653 MS.gene024239:intron 10.0%
!! AATCTTATCATTATTTAATA+GGG - chr7.4:23584400-23584419 None:intergenic 10.0%
!! TACTACATATATTATTAAAT+TGG - chr7.4:23583641-23583660 None:intergenic 10.0%
!!! AAATAATGATAAGATTTTTA+AGG + chr7.4:23584404-23584423 MS.gene024239:intron 10.0%
!!! ATATTTTTATTTGATTTCTT+AGG - chr7.4:23584147-23584166 None:intergenic 10.0%
!!! CTATTTAAATTTTAAATAGT+AGG - chr7.4:23584083-23584102 None:intergenic 10.0%
!!! TAAAATGTTTTTTTTTTTTG+AGG - chr7.4:23584023-23584042 None:intergenic 10.0%
!!! TATCTTTTTTATTTATAATC+AGG + chr7.4:23583216-23583235 MS.gene024239:intron 10.0%
!!! TGTTTAAATTTTAAATACTA+GGG - chr7.4:23583786-23583805 None:intergenic 10.0%
!! ACAGAAAAATAAAATGTATT+TGG - chr7.4:23583737-23583756 None:intergenic 15.0%
!! TAAATTCTTTAAACTAAAGA+TGG - chr7.4:23583409-23583428 None:intergenic 15.0%
!!! ACAATTTGATTTATTCATTT+TGG + chr7.4:23582774-23582793 MS.gene024239:intron 15.0%
!!! ATATTTGTATTTGATTTCTT+AGG - chr7.4:23583852-23583871 None:intergenic 15.0%
!!! ATATTTGTGTTTGATTTTAT+AGG - chr7.4:23583589-23583608 None:intergenic 15.0%
!!! CAATTTGATTTATTCATTTT+GGG + chr7.4:23582775-23582794 MS.gene024239:intron 15.0%
!!! CTGTTTAAATTTTAAATACT+AGG - chr7.4:23583787-23583806 None:intergenic 15.0%
!!! TTTTTTTAAGTAATGTGTTT+TGG + chr7.4:23583137-23583156 MS.gene024239:intron 15.0%
!! AACATCATATAAACATTTCA+TGG - chr7.4:23582736-23582755 None:intergenic 20.0%
!! ACATCATATAAACATTTCAT+GGG - chr7.4:23582735-23582754 None:intergenic 20.0%
!! CACAAAAAGTAAAATGTATT+TGG - chr7.4:23584350-23584369 None:intergenic 20.0%
!! CCATCAAAAGATTAATTAAA+TGG - chr7.4:23582625-23582644 None:intergenic 20.0%
!! GAATTTATTTGTAAGTCTTA+TGG + chr7.4:23583422-23583441 MS.gene024239:intron 20.0%
!! TGCTCCATATATTATTAAAT+TGG - chr7.4:23583904-23583923 None:intergenic 20.0%
!!! AAAATGTATTTGGTCTTTTT+AGG - chr7.4:23584340-23584359 None:intergenic 20.0%
!!! AAATGATTTTGGTCTAATTT+AGG - chr7.4:23583986-23584005 None:intergenic 20.0%
!!! ATTTTTTTTTTGCAGATGAT+AGG + chr7.4:23582806-23582825 MS.gene024239:intron 20.0%
!!! CACAAAAAGTAAAATGATTT+TGG - chr7.4:23583997-23584016 None:intergenic 20.0%
!!! CCATTTAATTAATCTTTTGA+TGG + chr7.4:23582622-23582641 MS.gene024239:intron 20.0%
!!! TTTATATGATGTTTTCATGT+GGG + chr7.4:23582743-23582762 MS.gene024239:intron 20.0%
! ATCATAAGTTTCATTTGCTT+GGG + chr7.4:23583362-23583381 MS.gene024239:intron 25.0%
! CTTTAATCTGTGTAGTATAT+AGG + chr7.4:23583456-23583475 MS.gene024239:intron 25.0%
! TTTCTATTGATAAGACACAA+TGG - chr7.4:23582549-23582568 None:intergenic 25.0%
!! AGTACTATTTCTTTGATATC+AGG + chr7.4:23582848-23582867 MS.gene024239:CDS 25.0%
!! CTGTATAAGATATTTCCTTT+TGG + chr7.4:23584516-23584535 MS.gene024239:intron 25.0%
!! GTTTATATGATGTTTTCATG+TGG + chr7.4:23582742-23582761 MS.gene024239:intron 25.0%
!! TTTTGAACTCAAATCAATGT+AGG + chr7.4:23583259-23583278 MS.gene024239:intron 25.0%
!!! AATCCTCAAAAGTTTTTTGA+TGG - chr7.4:23583115-23583134 None:intergenic 25.0%
!!! ATATTTTAGTCCATTTGGTA+AGG + chr7.4:23584584-23584603 MS.gene024239:intron 25.0%
!!! TGCTAGTTTTTATGTAAACT+TGG + chr7.4:23583185-23583204 MS.gene024239:intron 25.0%
!!! TTTCACACAATCTTTTGATT+GGG + chr7.4:23582953-23582972 MS.gene024239:CDS 25.0%
AACACATTTGTTTACTGGAT+AGG + chr7.4:23582982-23583001 MS.gene024239:CDS 30.0%
ACACATTTGTTTACTGGATA+GGG + chr7.4:23582983-23583002 MS.gene024239:CDS 30.0%
CAAATGAAACTTATGATCCA+TGG - chr7.4:23583359-23583378 None:intergenic 30.0%
CACCTTTATACCCAATTTAA+TGG + chr7.4:23584433-23584452 MS.gene024239:intron 30.0%
CTAATTATTTGTTCCGTCAA+CGG + chr7.4:23583553-23583572 MS.gene024239:intron 30.0%
CTAGAATCAGATAATTAGCT+TGG + chr7.4:23584620-23584639 MS.gene024239:intron 30.0%
GAAAGAACACATTTGTTTAC+TGG + chr7.4:23582977-23582996 MS.gene024239:CDS 30.0%
GATCATAAGTTTCATTTGCT+TGG + chr7.4:23583361-23583380 MS.gene024239:intron 30.0%
TCATACCTTAAATATCCGAT+AGG - chr7.4:23583300-23583319 None:intergenic 30.0%
TGCCATTAAATTGGGTATAA+AGG - chr7.4:23584438-23584457 None:intergenic 30.0%
TGTGTTAGTCAACTAAAGTT+TGG + chr7.4:23584048-23584067 MS.gene024239:intron 30.0%
TTAAGCTAATCCTTACCAAA+TGG - chr7.4:23584597-23584616 None:intergenic 30.0%
! AATTGGGTATAAAGGTGTAA+AGG - chr7.4:23584430-23584449 None:intergenic 30.0%
! ATCGGATATTTAAGGTATGA+AGG + chr7.4:23583300-23583319 MS.gene024239:intron 30.0%
! CTTTCACACAATCTTTTGAT+TGG + chr7.4:23582952-23582971 MS.gene024239:CDS 30.0%
! GTTTCTTGTGCCATTAAATT+GGG - chr7.4:23584446-23584465 None:intergenic 30.0%
! TCACCATCAAAAAACTTTTG+AGG + chr7.4:23583109-23583128 MS.gene024239:intron 30.0%
! TGTTTCTTGTGCCATTAAAT+TGG - chr7.4:23584447-23584466 None:intergenic 30.0%
! TTTTAAATACTAGGGCGTAA+AGG - chr7.4:23583778-23583797 None:intergenic 30.0%
!! AGATTGCTTGTTATTTCTCT+TGG + chr7.4:23584544-23584563 MS.gene024239:intron 30.0%
!! AGTAATGTGTTTTGGACTTA+TGG + chr7.4:23583145-23583164 MS.gene024239:intron 30.0%
!! GATTGCTTGTTATTTCTCTT+GGG + chr7.4:23584545-23584564 MS.gene024239:intron 30.0%
!!! AAGTTTTTTGATGGTGATAG+TGG - chr7.4:23583106-23583125 None:intergenic 30.0%
!!! GCATGATATTTTAGTCCATT+TGG + chr7.4:23584579-23584598 MS.gene024239:intron 30.0%
AAACTTATGATCCATGGAGA+GGG - chr7.4:23583353-23583372 None:intergenic 35.0%
ATTGTATTCATTACCCTAGC+TGG - chr7.4:23583078-23583097 None:intergenic 35.0%
CATCCATATTCTCGAATCTA+CGG - chr7.4:23582876-23582895 None:intergenic 35.0%
CTGAAATTTCACAAACCTCT+TGG - chr7.4:23582470-23582489 None:intergenic 35.0%
GAGAATAGTTGAATGGAATG+AGG + chr7.4:23582921-23582940 MS.gene024239:CDS 35.0%
GTGAATGGAGAATAGTTGAA+TGG + chr7.4:23582914-23582933 MS.gene024239:CDS 35.0%
TACAATTCATCATCCAGCTA+GGG + chr7.4:23583062-23583081 MS.gene024239:CDS 35.0%
TCGAATTCAAACAAGTGAGT+TGG - chr7.4:23582419-23582438 None:intergenic 35.0%
! AATCAGATAATTAGCTTGGC+TGG + chr7.4:23584624-23584643 MS.gene024239:intron 35.0%
! GGATATTTAAGGTATGAAGG+TGG + chr7.4:23583303-23583322 MS.gene024239:intron 35.0%
! TGCAGATGATAGGTTTTCTT+TGG + chr7.4:23582816-23582835 MS.gene024239:intron 35.0%
!!! ATAGGTTTTCTTTGGAGCAT+AGG + chr7.4:23582824-23582843 MS.gene024239:CDS 35.0%
AATATGGATGCAAGAAGAGC+TGG + chr7.4:23582886-23582905 MS.gene024239:CDS 40.0%
AGGTGCCTATCGGATATTTA+AGG + chr7.4:23583292-23583311 MS.gene024239:CDS 40.0%
ATGTGTTTCAAACTGAGCCA+TGG + chr7.4:23582438-23582457 MS.gene024239:CDS 40.0%
CAAGCAATCTAACAGCCAAA+AGG - chr7.4:23584534-23584553 None:intergenic 40.0%
GAAACTTATGATCCATGGAG+AGG - chr7.4:23583354-23583373 None:intergenic 40.0%
GAACCGTAGATTCGAGAATA+TGG + chr7.4:23582870-23582889 MS.gene024239:CDS 40.0%
GGATCAAACTTGTATCCAAC+AGG - chr7.4:23582338-23582357 None:intergenic 40.0%
GTACAATTCATCATCCAGCT+AGG + chr7.4:23583061-23583080 MS.gene024239:CDS 40.0%
TCTTAGACATGCAGTTGGAA+GGG + chr7.4:23582675-23582694 MS.gene024239:intron 40.0%
TTTGTTTACTGGATAGGGCA+AGG + chr7.4:23582988-23583007 MS.gene024239:CDS 40.0%
! ATCAAGCTCTGATGACACAA+TGG + chr7.4:23583013-23583032 MS.gene024239:CDS 40.0%
! TCAAACAAGTGAGTTGGAAG+AGG - chr7.4:23582413-23582432 None:intergenic 40.0%
!! AGGATTGACTTGATCGTTGA+CGG - chr7.4:23583832-23583851 None:intergenic 40.0%
!! TAGGATTGACTTGTCGTTGA+CGG - chr7.4:23584128-23584147 None:intergenic 40.0%
AGGTGGCAAAACTGAGAAGA+AGG + chr7.4:23583320-23583339 MS.gene024239:intron 45.0%
CTTGTTGAGTACTACCTGAC+GGG + chr7.4:23582371-23582390 MS.gene024239:CDS 45.0%
GTCTTAGACATGCAGTTGGA+AGG + chr7.4:23582674-23582693 MS.gene024239:intron 45.0%
GTGTGTCTTAGACATGCAGT+TGG + chr7.4:23582670-23582689 MS.gene024239:intron 45.0%
TCAACAAGCTCGTGATCAGT+TGG - chr7.4:23582359-23582378 None:intergenic 45.0%
TCAATGTAGGAGACAGCTGT+AGG + chr7.4:23583272-23583291 MS.gene024239:intron 45.0%
TGTTTCAAACTGAGCCATGG+AGG + chr7.4:23582441-23582460 MS.gene024239:CDS 45.0%
TTGTTGAGTACTACCTGACG+GGG + chr7.4:23582372-23582391 MS.gene024239:CDS 45.0%
! AAGCTCTGATGACACAATGG+TGG + chr7.4:23583016-23583035 MS.gene024239:CDS 45.0%
! ACAAGTGAGTTGGAAGAGGT+AGG - chr7.4:23582409-23582428 None:intergenic 45.0%
! GCTTGTTGAGTACTACCTGA+CGG + chr7.4:23582370-23582389 MS.gene024239:CDS 45.0%
! GGCTGGTTGTCATCATTTCT+AGG + chr7.4:23584641-23584660 MS.gene024239:intron 45.0%
!! AGGATTGACTTGACCGTTGA+CGG - chr7.4:23583569-23583588 None:intergenic 45.0%
!!! ACAAAAATTTAAAATTTAAA+TGG - chr7.4:23582589-23582608 None:intergenic 5.0%
!!! ACTATTTATTATTTAATTTA+TGG - chr7.4:23583950-23583969 None:intergenic 5.0%
!!! TATTTAAATTTTAAATAGTA+GGG - chr7.4:23584082-23584101 None:intergenic 5.0%
AGACAGCTGTAGGTGCCTAT+CGG + chr7.4:23583282-23583301 MS.gene024239:CDS 50.0%
CTTATGATCCATGGAGAGGG+AGG - chr7.4:23583350-23583369 None:intergenic 50.0%
GAAGAGCTGGAGATGGTGAA+TGG + chr7.4:23582899-23582918 MS.gene024239:CDS 50.0%
GATGCAAGAAGAGCTGGAGA+TGG + chr7.4:23582892-23582911 MS.gene024239:CDS 50.0%
GCTGAGCTTCTTCTACCTGT+TGG + chr7.4:23582320-23582339 MS.gene024239:CDS 50.0%
TAGACATGCAGTTGGAAGGG+AGG + chr7.4:23582678-23582697 MS.gene024239:intron 50.0%
! GGTTGAGAATTTTCCCCGTC+AGG - chr7.4:23582388-23582407 None:intergenic 50.0%
AAACCTCTTGGCAGCCTCCA+TGG - chr7.4:23582458-23582477 None:intergenic 55.0%
ATGATCCATGGAGAGGGAGG+AGG - chr7.4:23583347-23583366 None:intergenic 55.0%
TGATCCATGGAGAGGGAGGA+GGG - chr7.4:23583346-23583365 None:intergenic 55.0%
AAGGCCCTCCTCCCTCTCCA+TGG + chr7.4:23583339-23583358 MS.gene024239:intron 65.0%
GAGCCATGGAGGCTGCCAAG+AGG + chr7.4:23582452-23582471 MS.gene024239:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 23582305 23584674 23582305 ID=MS.gene024239
chr7.4 mRNA 23582305 23584674 23582305 ID=MS.gene024239.t1;Parent=MS.gene024239
chr7.4 exon 23582305 23582473 23582305 ID=MS.gene024239.t1.exon1;Parent=MS.gene024239.t1
chr7.4 CDS 23582305 23582473 23582305 ID=cds.MS.gene024239.t1;Parent=MS.gene024239.t1
chr7.4 exon 23582821 23583083 23582821 ID=MS.gene024239.t1.exon2;Parent=MS.gene024239.t1
chr7.4 CDS 23582821 23583083 23582821 ID=cds.MS.gene024239.t1;Parent=MS.gene024239.t1
chr7.4 exon 23583281 23583313 23583281 ID=MS.gene024239.t1.exon3;Parent=MS.gene024239.t1
chr7.4 CDS 23583281 23583313 23583281 ID=cds.MS.gene024239.t1;Parent=MS.gene024239.t1
chr7.4 exon 23584663 23584674 23584663 ID=MS.gene024239.t1.exon4;Parent=MS.gene024239.t1
chr7.4 CDS 23584663 23584674 23584663 ID=cds.MS.gene024239.t1;Parent=MS.gene024239.t1
Gene Sequence

>MS.gene024239

ATGGCTGTAGCTAATGCTGAGCTTCTTCTACCTGTTGGATACAAGTTTGATCCAACTGATCACGAGCTTGTTGAGTACTACCTGACGGGGAAAATTCTCAACCTACCTCTTCCAACTCACTTGTTTGAATTCGATGTGTTTCAAACTGAGCCATGGAGGCTGCCAAGAGGTTTGTGAAATTTCAGTTTTTGATAGAATAATAAATGCTCTTTTTTTAATGTTTATATTCTTTTTCTTACGACCATTGTGTCTTATCAATAGAAATCAAATTTTTACAAGAGCCATTTAAATTTTAAATTTTTGTAGTGTTCTTTGAACCATTTAATTAATCTTTTGATGGATTTTCATTAATCTTGAGAATGAACGTGTGTCTTAGACATGCAGTTGGAAGGGAGGAGACTTAAAAAGTCATTTTTTTTTTTTATGTCCCATGAAATGTTTATATGATGTTTTCATGTGGGTAATTAACACAATTTGATTTATTCATTTTGGGTTAATTCAATTTTTTTTTTGCAGATGATAGGTTTTCTTTGGAGCATAGGAAGTACTATTTCTTTGATATCAGGAACCGTAGATTCGAGAATATGGATGCAAGAAGAGCTGGAGATGGTGAATGGAGAATAGTTGAATGGAATGAGGATTTTGCTCTTTCACACAATCTTTTGATTGGGAGAAAGAACACATTTGTTTACTGGATAGGGCAAGGAAATCAAGCTCTGATGACACAATGGTGGATGCATGAATTCTTCATCATCAGTACAATTCATCATCCAGCTAGGGTAATGAATACAATATTGACCACTATCACCATCAAAAAACTTTTGAGGATTTTTTTTTTTAAGTAATGTGTTTTGGACTTATGGTATTTTCAGCTAAAAATTGCTAGTTTTTATGTAAACTTGGTTCGTTTTTATCTTTTTTATTTATAATCAGGAACTATATATAGTCACTGAATTTTGAACTCAAATCAATGTAGGAGACAGCTGTAGGTGCCTATCGGATATTTAAGGTATGAAGGTGGCAAAACTGAGAAGAAGGCCCTCCTCCCTCTCCATGGATCATAAGTTTCATTTGCTTGGGTTTAGAATAGTTTTAATAGATCCATCTTTAGTTTAAAGAATTTATTTGTAAGTCTTATGGACAATAAACATCTTTAATCTGTGTAGTATATAGGAATTGAGTTTTGTATTTGTACTCATTTGAATAATACTAATAAGAAACTATTTAAAATTTAGACAGTGTTCTTTACTAATTATTTGTTCCGTCAACGGTCAAGTCAATCCTATAAAATCAAACACAAATATTAGTTGAAATCAAATTTTAGTAAAAAATACCAATTTAATAATATATGTAGTAAAATATTTCTTAAAAAATTGTAGTCATAAATTAAATATAAATAAATAGTAAAATGTATTTGATCTAAATTAGACCAAATACATTTTATTTTTCTGTTAGTCAACTAATGTCTGACCTTTACGCCCTAGTATTTAAAATTTAAACAGTGTTTTTTACTAATTATTTGTTCCGTCAACGATCAAGTCAATCCTAAGAAATCAAATACAAATATTAGTTGAAATCAAATTTTAGTAAAAAATACCAATTTAATAATATATGGAGCAAAATATTTCTAAAAAAAATGTAGCCATAAATTAAATAATAAATAGTCAAATGTATTTGACCTAAATTAGACCAAAATCATTTTACTTTTTGTGATACCTCAAAAAAAAAAAACATTTTACTTTTTGTGTTAGTCAACTAAAGTTTGGACTTTACACCCTACTATTTAAAATTTAAATAGTGTTCTTTACTAATTATTTGTTCCGTCAACGACAAGTCAATCCTAAGAAATCAAATAAAAATATTAGTTGAAATCAAATAAAAATATTAGTTGAAATCAAATTTTAGTAAAAAATACAAATTTAATAATATATGTAGTAAAATATTTCTTCAAAAAAAAAATATAGTCATAAATTAAATATAAATATTTTTTTTTTTTGACGTTTGTTATAAATAAATAGTCAAATGTATTTGACCTAAAAAGACCAAATACATTTTACTTTTTGTGTTAGTTAACTAACGTTTGACGTTTACGCCCTATTAAATAATGATAAGATTTTTAAGGCCTTTACACCTTTATACCCAATTTAATGGCACAAGAAACATCAAGTTTTCTAATTTTAAAAAGTAAAGTGTAATTTTGTAAGACTCATTCTGTATAAGATATTTCCTTTTGGCTGTTAGATTGCTTGTTATTTCTCTTGGGAAGAATTTCGAGCATGATATTTTAGTCCATTTGGTAAGGATTAGCTTAACATCTAGAATCAGATAATTAGCTTGGCTGGTTGTCATCATTTCTAGGATTCATCATGA
Protein sequence

>MS.gene024239.t1

MAVANAELLLPVGYKFDPTDHELVEYYLTGKILNLPLPTHLFEFDVFQTEPWRLPRDDRFSLEHRKYYFFDIRNRRFENMDARRAGDGEWRIVEWNEDFALSHNLLIGRKNTFVYWIGQGNQALMTQWWMHEFFIISTIHHPARETAVGAYRIFKDSS