AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024244

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024244.t1 MTR_7g083360 90.210 143 14 0 1 143 1 143 3.49e-95 271
MS.gene024244.t1 MTR_7g083370 80.741 135 26 0 1 135 1 135 1.48e-77 226
MS.gene024244.t1 MTR_7g083330 67.376 141 46 0 3 143 11 151 1.35e-65 198
MS.gene024244.t1 MTR_3g088110 33.824 136 83 4 6 138 3 134 4.04e-21 86.7
MS.gene024244.t1 MTR_3g109340 33.088 136 85 5 4 135 16 149 6.24e-20 84.3
MS.gene024244.t1 MTR_3g109340 33.088 136 85 5 4 135 16 149 6.45e-20 84.3
MS.gene024244.t1 MTR_2157s0010 33.088 136 84 4 3 133 1 134 1.18e-19 82.4
MS.gene024244.t1 MTR_7g085220 31.690 142 84 4 3 133 1 140 1.26e-19 83.2
MS.gene024244.t1 MTR_4g081870 32.117 137 86 5 4 136 3 136 4.88e-19 80.9
MS.gene024244.t1 MTR_7g085260 34.091 132 79 5 8 133 15 144 7.51e-19 81.6
MS.gene024244.t1 MTR_8g059170 31.206 141 88 5 6 143 10 144 9.46e-19 80.9
MS.gene024244.t1 MTR_4g089135 34.375 128 78 4 10 133 15 140 1.29e-18 80.5
MS.gene024244.t1 MTR_2g080010 31.469 143 89 5 2 140 7 144 2.14e-18 80.1
MS.gene024244.t1 MTR_7g005280 33.835 133 79 6 5 133 10 137 4.75e-18 77.8
MS.gene024244.t1 MTR_6g032770 32.624 141 88 5 4 139 12 150 5.25e-18 79.3
MS.gene024244.t1 MTR_3g096920 32.353 136 85 4 6 138 3 134 5.42e-18 78.2
MS.gene024244.t1 MTR_2g079990 30.496 141 89 5 6 143 12 146 5.71e-18 79.0
MS.gene024244.t1 MTR_2g079990 30.496 141 89 5 6 143 12 146 5.89e-18 79.0
MS.gene024244.t1 MTR_5g076850 33.588 131 83 3 6 133 2 131 6.79e-18 79.3
MS.gene024244.t1 MTR_3g096920 32.353 136 85 4 6 138 3 134 7.20e-18 78.6
MS.gene024244.t1 MTR_8g094580 30.882 136 87 4 6 138 3 134 1.81e-17 77.0
MS.gene024244.t1 MTR_1g008740 33.582 134 82 5 7 135 10 141 2.74e-17 77.0
MS.gene024244.t1 MTR_3g064580 32.824 131 84 3 6 133 2 131 3.09e-17 77.4
MS.gene024244.t1 MTR_1g008740 33.582 134 82 5 7 135 24 155 3.10e-17 77.0
MS.gene024244.t1 MTR_6g477900 32.824 131 84 3 6 133 2 131 3.48e-17 75.5
MS.gene024244.t1 MTR_2g064090 31.298 131 86 3 6 133 2 131 5.35e-17 76.3
MS.gene024244.t1 MTR_6g011860 33.333 135 85 3 9 140 14 146 5.74e-17 76.3
MS.gene024244.t1 MTR_5g041940 33.083 133 82 6 8 136 1 130 7.34e-17 74.7
MS.gene024244.t1 MTR_6g084430 32.308 130 82 4 7 133 2 128 1.40e-16 74.7
MS.gene024244.t1 MTR_3g070030 34.328 134 82 5 3 133 12 142 1.91e-16 74.7
MS.gene024244.t1 MTR_5g040420 32.374 139 87 5 7 141 12 147 1.97e-16 74.7
MS.gene024244.t1 MTR_3g116070 34.091 132 80 5 7 133 20 149 2.42e-16 74.3
MS.gene024244.t1 MTR_5g090970 34.848 132 78 5 7 133 16 144 4.02e-16 73.6
MS.gene024244.t1 MTR_2g078700 32.061 131 83 5 7 133 20 148 5.01e-16 73.6
MS.gene024244.t1 MTR_5g090970 34.848 132 77 5 7 133 16 143 5.35e-16 73.2
MS.gene024244.t1 MTR_2g068880 32.609 138 85 5 3 133 14 150 6.26e-16 72.8
MS.gene024244.t1 MTR_6g012670 31.579 133 85 4 4 133 14 143 7.03e-16 72.8
MS.gene024244.t1 MTR_7g100990 30.827 133 86 4 5 133 6 136 7.22e-16 72.8
MS.gene024244.t1 MTR_2g093810 31.387 137 85 5 10 142 14 145 1.18e-15 72.4
MS.gene024244.t1 MTR_2g068920 33.333 138 84 5 2 133 14 149 1.83e-15 71.6
MS.gene024244.t1 MTR_7g011120 33.333 138 86 5 5 139 3 137 2.38e-15 71.2
MS.gene024244.t1 MTR_4g108760 30.769 130 84 5 7 133 14 140 3.85e-15 71.2
MS.gene024244.t1 MTR_2g062730 30.657 137 91 3 1 133 1 137 5.75e-15 70.5
MS.gene024244.t1 MTR_8g467490 32.609 138 86 5 7 140 12 146 8.90e-15 70.1
MS.gene024244.t1 MTR_8g099750 28.148 135 89 4 3 133 7 137 9.40e-15 68.6
MS.gene024244.t1 MTR_4g035590 32.877 146 91 6 1 142 1 143 1.31e-14 69.7
MS.gene024244.t1 MTR_1g069805 29.927 137 90 4 1 133 1 135 3.13e-14 67.8
MS.gene024244.t1 MTR_1g090720 30.233 129 86 3 8 133 40 167 6.40e-14 67.8
MS.gene024244.t1 MTR_3g096140 30.597 134 88 4 3 133 1 132 7.90e-14 67.0
MS.gene024244.t1 MTR_5g069030 33.858 127 80 3 10 133 25 150 1.09e-13 67.4
MS.gene024244.t1 MTR_1g097300 30.159 126 84 3 13 135 22 146 1.17e-13 67.0
MS.gene024244.t1 MTR_2g086880 32.540 126 80 5 13 135 21 144 1.46e-13 67.0
MS.gene024244.t1 MTR_3g096140 30.597 134 88 4 3 133 1 132 2.17e-13 66.2
MS.gene024244.t1 MTR_2g086880 32.540 126 80 5 13 135 21 144 2.86e-13 66.2
MS.gene024244.t1 MTR_7g097090 30.657 137 89 4 1 133 1 135 8.61e-13 63.9
MS.gene024244.t1 MTR_4g094302 34.127 126 73 5 10 133 11 128 8.76e-13 62.8
MS.gene024244.t1 MTR_4g094302 34.127 126 73 5 10 133 11 128 9.49e-13 62.0
MS.gene024244.t1 MTR_4g036030 30.469 128 84 4 10 133 7 133 1.16e-12 63.9
MS.gene024244.t1 MTR_5g021710 30.827 133 87 4 5 133 3 134 1.24e-12 63.9
MS.gene024244.t1 MTR_5g012080 28.906 128 87 3 10 133 7 134 2.99e-12 62.8
MS.gene024244.t1 MTR_8g076110 30.534 131 86 4 7 133 3 132 3.42e-12 62.4
MS.gene024244.t1 MTR_3g093040 30.233 129 86 3 8 133 106 233 3.47e-12 62.4
MS.gene024244.t1 MTR_8g023900 29.457 129 85 5 10 133 12 139 5.16e-12 62.4
MS.gene024244.t1 MTR_1g096430 28.571 133 90 4 5 133 2 133 9.23e-12 61.6
MS.gene024244.t1 MTR_3g093050 31.496 127 83 3 10 133 22 147 1.04e-11 61.6
MS.gene024244.t1 MTR_3g093050 31.496 127 83 3 10 133 22 147 1.10e-11 61.6
MS.gene024244.t1 MTR_2g086690 31.429 140 87 4 9 140 3 141 1.42e-11 60.5
MS.gene024244.t1 MTR_3g098810 27.737 137 89 4 3 133 7 139 1.69e-11 58.9
MS.gene024244.t1 MTR_4g134460 29.231 130 86 4 7 133 52 178 1.86e-11 60.8
MS.gene024244.t1 MTR_0036s0150 26.400 125 87 3 13 133 8 131 3.01e-11 60.1
MS.gene024244.t1 MTR_1g090723 29.104 134 87 5 13 142 11 140 3.06e-11 60.1
MS.gene024244.t1 MTR_1g090723 29.104 134 87 5 13 142 11 140 3.60e-11 60.1
MS.gene024244.t1 MTR_1g090723 29.104 134 87 5 13 142 11 140 3.60e-11 60.1
MS.gene024244.t1 MTR_3g098810 27.737 137 89 4 3 133 7 139 4.41e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024244.t1 AT5G18270 36.434 129 77 4 8 133 19 145 4.24e-21 87.4
MS.gene024244.t1 AT5G18270 35.659 129 78 4 8 133 19 145 6.87e-21 86.7
MS.gene024244.t1 AT5G13180 35.556 135 78 5 3 133 7 136 1.82e-20 84.3
MS.gene024244.t1 AT1G61110 31.690 142 89 4 2 140 8 144 6.07e-20 84.0
MS.gene024244.t1 AT1G77450 31.915 141 89 4 1 138 1 137 9.02e-20 82.4
MS.gene024244.t1 AT1G76420 35.115 131 79 5 7 133 19 147 1.33e-19 83.2
MS.gene024244.t1 AT5G63790 33.088 136 84 4 6 138 46 177 1.69e-19 82.8
MS.gene024244.t1 AT5G63790 33.088 136 84 4 6 138 56 187 1.74e-19 82.8
MS.gene024244.t1 AT3G04070 30.667 150 95 4 1 143 1 148 2.30e-19 82.8
MS.gene024244.t1 AT5G08790 33.088 136 84 4 6 138 3 134 3.12e-19 81.6
MS.gene024244.t1 AT3G04070 30.667 150 95 4 1 143 1 148 3.38e-19 82.4
MS.gene024244.t1 AT5G04410 32.836 134 83 4 10 140 9 138 9.02e-19 82.0
MS.gene024244.t1 AT2G24430 34.351 131 80 5 7 133 13 141 2.09e-18 79.7
MS.gene024244.t1 AT2G24430 34.351 131 80 5 7 133 13 141 2.09e-18 79.7
MS.gene024244.t1 AT3G10500 33.071 127 81 3 10 133 9 134 2.18e-18 80.9
MS.gene024244.t1 AT3G15500 31.206 141 88 5 6 143 10 144 3.14e-18 79.3
MS.gene024244.t1 AT5G53950 33.594 128 79 5 10 133 17 142 7.63e-18 79.0
MS.gene024244.t1 AT1G01720 32.090 134 84 4 8 138 5 134 9.96e-18 77.8
MS.gene024244.t1 AT5G17260 32.824 131 84 3 6 133 2 131 1.02e-17 79.0
MS.gene024244.t1 AT1G52890 31.915 141 87 5 6 143 10 144 1.12e-17 77.8
MS.gene024244.t1 AT3G17730 34.351 131 82 3 6 133 2 131 1.38e-17 76.6
MS.gene024244.t1 AT3G03200 33.588 131 83 3 6 133 2 131 1.45e-17 78.2
MS.gene024244.t1 AT1G65910 32.061 131 85 3 6 133 2 131 1.88e-17 78.2
MS.gene024244.t1 AT3G04060 32.558 129 82 4 8 133 18 144 3.06e-17 77.0
MS.gene024244.t1 AT3G29035 33.077 130 81 5 7 133 21 147 3.45e-17 76.6
MS.gene024244.t1 AT5G39610 31.618 136 87 5 1 133 11 143 5.57e-17 75.5
MS.gene024244.t1 AT1G69490 32.331 133 84 5 4 133 3 132 5.86e-17 75.1
MS.gene024244.t1 AT4G27410 30.534 131 85 4 6 133 10 137 8.64e-17 75.1
MS.gene024244.t1 AT2G33480 32.812 128 75 5 10 133 15 135 1.80e-16 73.9
MS.gene024244.t1 AT5G61430 32.308 130 82 5 7 133 13 139 2.00e-16 74.7
MS.gene024244.t1 AT2G33480 32.812 128 75 5 10 133 15 135 2.00e-16 73.9
MS.gene024244.t1 AT3G15510 32.258 124 78 4 14 133 21 142 2.03e-16 74.7
MS.gene024244.t1 AT5G07680 31.655 139 88 6 5 139 12 147 2.13e-16 74.3
MS.gene024244.t1 AT5G39820 31.159 138 88 5 7 140 18 152 2.45e-16 74.3
MS.gene024244.t1 AT2G43000 33.846 130 79 5 7 133 16 141 2.79e-16 73.6
MS.gene024244.t1 AT3G15170 32.061 131 83 5 7 133 17 145 3.15e-16 73.9
MS.gene024244.t1 AT5G07680 32.353 136 85 6 8 139 1 133 3.38e-16 73.9
MS.gene024244.t1 AT2G27300 35.714 126 76 5 13 135 17 140 6.03e-16 73.2
MS.gene024244.t1 AT3G10490 33.088 136 85 5 2 133 19 152 6.97e-16 72.0
MS.gene024244.t1 AT3G12910 33.571 140 82 5 8 140 20 155 3.07e-15 70.9
MS.gene024244.t1 AT3G10480 33.088 136 85 5 2 133 19 152 3.14e-15 71.6
MS.gene024244.t1 AT3G10480 33.088 136 85 5 2 133 19 152 3.18e-15 71.6
MS.gene024244.t1 AT1G26870 32.576 132 80 6 7 133 14 141 3.86e-15 71.2
MS.gene024244.t1 AT1G54330 32.331 133 82 4 6 133 2 131 4.01e-15 70.9
MS.gene024244.t1 AT3G10490 33.088 136 85 5 2 133 19 152 9.01e-15 70.5
MS.gene024244.t1 AT4G27410 27.397 146 87 4 6 133 10 154 1.38e-14 69.3
MS.gene024244.t1 AT4G17980 28.148 135 93 3 10 140 6 140 3.17e-14 67.8
MS.gene024244.t1 AT4G36160 29.927 137 91 4 1 133 5 140 5.62e-14 67.8
MS.gene024244.t1 AT4G17980 28.148 135 93 3 10 140 6 140 5.70e-14 67.4
MS.gene024244.t1 AT4G36160 29.927 137 91 4 1 133 1 136 5.91e-14 67.8
MS.gene024244.t1 AT4G36160 29.927 137 91 4 1 133 1 136 5.91e-14 67.8
MS.gene024244.t1 AT1G34190 29.927 137 87 4 13 141 19 154 6.15e-14 68.2
MS.gene024244.t1 AT1G34180 30.159 126 84 3 13 135 19 143 7.33e-14 67.8
MS.gene024244.t1 AT1G33280 31.944 144 91 5 1 140 1 141 1.01e-13 67.0
MS.gene024244.t1 AT1G34180 30.159 126 84 3 13 135 19 143 1.22e-13 67.0
MS.gene024244.t1 AT4G10350 30.986 142 93 4 4 141 3 143 1.37e-13 66.6
MS.gene024244.t1 AT5G14000 25.899 139 93 5 3 136 8 141 2.51e-13 63.5
MS.gene024244.t1 AT5G66300 31.538 130 84 4 8 133 10 138 2.81e-13 65.5
MS.gene024244.t1 AT4G35580 32.283 127 82 3 10 133 9 134 4.34e-13 65.5
MS.gene024244.t1 AT1G33060 32.283 127 82 4 10 133 24 149 4.70e-13 65.5
MS.gene024244.t1 AT5G46590 27.559 127 89 2 10 133 6 132 4.78e-13 64.7
MS.gene024244.t1 AT1G33060 32.283 127 82 4 10 133 24 149 4.98e-13 65.5
MS.gene024244.t1 AT5G46590 27.559 127 89 2 10 133 6 132 5.05e-13 64.7
MS.gene024244.t1 AT4G35580 32.283 127 82 3 10 133 9 134 5.79e-13 65.1
MS.gene024244.t1 AT4G35580 32.283 127 82 3 10 133 9 134 6.26e-13 65.1
MS.gene024244.t1 AT2G18060 30.000 130 86 4 8 133 7 135 1.17e-12 64.3
MS.gene024244.t1 AT2G18060 30.000 130 86 4 8 133 7 135 1.17e-12 64.3
MS.gene024244.t1 AT5G14000 26.087 138 92 5 3 135 8 140 1.20e-12 62.8
MS.gene024244.t1 AT5G24590 30.709 127 85 2 10 133 13 139 1.83e-12 63.5
MS.gene024244.t1 AT5G64060 28.244 131 90 3 6 133 2 131 2.01e-12 63.5
MS.gene024244.t1 AT5G04395 29.221 154 91 6 1 137 19 171 2.65e-12 61.6
MS.gene024244.t1 AT1G71930 29.008 131 88 4 7 133 6 135 3.56e-12 62.8
MS.gene024244.t1 AT1G71930 29.008 131 88 4 7 133 6 135 3.56e-12 62.8
MS.gene024244.t1 AT5G64530 30.233 129 78 4 8 135 1 118 3.79e-12 60.5
MS.gene024244.t1 AT1G56010 27.941 136 91 4 2 133 11 143 8.54e-12 61.6
MS.gene024244.t1 AT5G64530 30.233 129 78 4 8 135 1 118 9.94e-12 60.1
MS.gene024244.t1 AT1G32870 29.921 127 87 2 10 135 10 135 1.55e-11 61.2
MS.gene024244.t1 AT1G32870 29.921 127 87 2 10 135 46 171 1.77e-11 60.8
MS.gene024244.t1 AT1G32870 29.921 127 87 2 10 135 10 135 1.79e-11 60.8
MS.gene024244.t1 AT5G50820 29.630 135 85 3 2 133 9 136 2.17e-11 59.3
MS.gene024244.t1 AT3G44290 27.692 130 89 4 13 139 17 144 5.06e-11 58.5
MS.gene024244.t1 AT3G44290 27.692 130 89 4 13 139 17 144 9.31e-11 58.5

Find 34 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCTACCTGCTGGATTC+AGG 0.237662 7.4:+23625658 MS.gene024244:CDS
TGCAGAAAATAGATACTCTT+TGG 0.273533 7.4:+23626087 MS.gene024244:intron
GAACCGTAGGTTCGAGAATA+TGG 0.296257 7.4:+23626141 MS.gene024244:CDS
TCAAATTCTGACATGACATT+TGG 0.343033 7.4:-23625747 None:intergenic
ATTGTATTCCTTACCCTAGT+TGG 0.360957 7.4:-23626343 None:intergenic
GAAAGAACAGATATGTTTAC+TGG 0.378161 7.4:+23626248 MS.gene024244:CDS
ATAGATACTCTTTGGAGAAT+AGG 0.394512 7.4:+23626095 MS.gene024244:CDS
AGTACTATTTCTTTGATCTC+AGG 0.411387 7.4:+23626119 MS.gene024244:CDS
ACAGATATGTTTACTGGATA+GGG 0.475339 7.4:+23626254 MS.gene024244:CDS
TCTGACATGACATTTGGAAA+AGG 0.488494 7.4:-23625741 None:intergenic
ACTGAGCCATGGAGGCTGCC+AGG 0.492712 7.4:+23625780 MS.gene024244:CDS
AACAGATATGTTTACTGGAT+AGG 0.498598 7.4:+23626253 MS.gene024244:CDS
TCAACAAGTACGCGATCGGT+TGG 0.506848 7.4:-23625687 None:intergenic
AAACCTCCTGGCAGCCTCCA+TGG 0.506870 7.4:-23625786 None:intergenic
GCTGAGGTTGATCTACCTGC+TGG 0.528162 7.4:+23625651 MS.gene024244:CDS
AATATGGATGCAAGAAGAGC+TGG 0.531324 7.4:+23626157 MS.gene024244:CDS
ATCAAGCTCTGATGACAAGA+TGG 0.547618 7.4:+23626284 MS.gene024244:CDS
ATATATTTCAAACTGAGCCA+TGG 0.550284 7.4:+23625769 MS.gene024244:CDS
ACATGACATTTGGAAAAGGT+TGG 0.561346 7.4:-23625737 None:intergenic
CATCCATATTCTCGAACCTA+CGG 0.563017 7.4:-23626144 None:intergenic
GTAGAATTTCTGATCCAACT+AGG 0.564430 7.4:+23626329 MS.gene024244:CDS
GATGCAAGAAGAGCTGGAAA+TGG 0.566075 7.4:+23626163 MS.gene024244:CDS
TCTTTGATCTCAGGAACCGT+AGG 0.573721 7.4:+23626128 MS.gene024244:CDS
GAAGAGCTGGAAATGGTGAA+TGG 0.577138 7.4:+23626170 MS.gene024244:CDS
GGATCAAACCTGAATCCAGC+AGG 0.578674 7.4:-23625666 None:intergenic
TAGAATTTCTGATCCAACTA+GGG 0.584601 7.4:+23626330 MS.gene024244:CDS
GCGAATAGTTCAAAGGAATG+AGG 0.587265 7.4:+23626192 MS.gene024244:CDS
GTGAATGGCGAATAGTTCAA+AGG 0.604587 7.4:+23626185 MS.gene024244:CDS
GCACTCAACAAGTACGCGAT+CGG 0.627245 7.4:-23625691 None:intergenic
AAGCTCTGATGACAAGATGG+TGG 0.668891 7.4:+23626287 MS.gene024244:CDS
TATTTCAAACTGAGCCATGG+AGG 0.675314 7.4:+23625772 MS.gene024244:CDS
GAGCCATGGAGGCTGCCAGG+AGG 0.693460 7.4:+23625783 MS.gene024244:CDS
CATGGCGGTAGCTAATGCTG+AGG 0.695855 7.4:+23625635 None:intergenic
TGGATGCATGAATTTGTCAT+CGG 0.708626 7.4:+23626307 MS.gene024244:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAATTGATTTATTCATTT+TGG + chr7.4:23626035-23626054 MS.gene024244:intron 15.0%
!!! CAAATTGATTTATTCATTTT+GGG + chr7.4:23626036-23626055 MS.gene024244:intron 15.0%
!! TCATAAAGAAAGAGAATAAA+GGG - chr7.4:23625852-23625871 None:intergenic 20.0%
!! TTTATTGATAAAACACACAA+TGG - chr7.4:23625875-23625894 None:intergenic 20.0%
!!! CTTATATGATGTTTTTATGT+GGG + chr7.4:23626004-23626023 MS.gene024244:intron 20.0%
! AACATCATATAAGCATTTCA+TGG - chr7.4:23625997-23626016 None:intergenic 25.0%
! GTCATAAAGAAAGAGAATAA+AGG - chr7.4:23625853-23625872 None:intergenic 25.0%
!! ATTTTCTTAGTGTTCTTTGA+TGG + chr7.4:23625901-23625920 MS.gene024244:intron 25.0%
!!! GCTTATATGATGTTTTTATG+TGG + chr7.4:23626003-23626022 MS.gene024244:intron 25.0%
AACAGATATGTTTACTGGAT+AGG + chr7.4:23626253-23626272 MS.gene024244:CDS 30.0%
ACAGATATGTTTACTGGATA+GGG + chr7.4:23626254-23626273 MS.gene024244:CDS 30.0%
ATATATTTCAAACTGAGCCA+TGG + chr7.4:23625769-23625788 MS.gene024244:CDS 30.0%
GAAAGAACAGATATGTTTAC+TGG + chr7.4:23626248-23626267 MS.gene024244:CDS 30.0%
TCAAATTCTGACATGACATT+TGG - chr7.4:23625750-23625769 None:intergenic 30.0%
TGCAGAAAATAGATACTCTT+TGG + chr7.4:23626087-23626106 MS.gene024244:intron 30.0%
! AGTACTATTTCTTTGATCTC+AGG + chr7.4:23626119-23626138 MS.gene024244:CDS 30.0%
! ATAGATACTCTTTGGAGAAT+AGG + chr7.4:23626095-23626114 MS.gene024244:CDS 30.0%
ACATGACATTTGGAAAAGGT+TGG - chr7.4:23625740-23625759 None:intergenic 35.0%
GTAGAATTTCTGATCCAACT+AGG + chr7.4:23626329-23626348 MS.gene024244:CDS 35.0%
TCTGACATGACATTTGGAAA+AGG - chr7.4:23625744-23625763 None:intergenic 35.0%
TGGATGCATGAATTTGTCAT+CGG + chr7.4:23626307-23626326 MS.gene024244:CDS 35.0%
TTGTGTCTTAGACATGCAAT+TGG + chr7.4:23625950-23625969 MS.gene024244:intron 35.0%
! GGTTGTATATTTTCTTCGTC+AGG - chr7.4:23625719-23625738 None:intergenic 35.0%
AATATGGATGCAAGAAGAGC+TGG + chr7.4:23626157-23626176 MS.gene024244:CDS 40.0%
CATCCATATTCTCGAACCTA+CGG - chr7.4:23626147-23626166 None:intergenic 40.0%
GCGAATAGTTCAAAGGAATG+AGG + chr7.4:23626192-23626211 MS.gene024244:CDS 40.0%
GTCTTAGACATGCAATTGGA+GGG + chr7.4:23625954-23625973 MS.gene024244:intron 40.0%
GTGAATGGCGAATAGTTCAA+AGG + chr7.4:23626185-23626204 MS.gene024244:CDS 40.0%
TATTTCAAACTGAGCCATGG+AGG + chr7.4:23625772-23625791 MS.gene024244:CDS 40.0%
TCTTAGACATGCAATTGGAG+GGG + chr7.4:23625955-23625974 MS.gene024244:intron 40.0%
TGTCTTAGACATGCAATTGG+AGG + chr7.4:23625953-23625972 MS.gene024244:intron 40.0%
! ATCAAGCTCTGATGACAAGA+TGG + chr7.4:23626284-23626303 MS.gene024244:CDS 40.0%
! GTTTTCTTTCACAAACCTCC+TGG - chr7.4:23625801-23625820 None:intergenic 40.0%
GAACCGTAGGTTCGAGAATA+TGG + chr7.4:23626141-23626160 MS.gene024244:CDS 45.0%
GAAGAGCTGGAAATGGTGAA+TGG + chr7.4:23626170-23626189 MS.gene024244:CDS 45.0%
GATGCAAGAAGAGCTGGAAA+TGG + chr7.4:23626163-23626182 MS.gene024244:CDS 45.0%
TCTTTGATCTCAGGAACCGT+AGG + chr7.4:23626128-23626147 MS.gene024244:CDS 45.0%
TTGATCTACCTGCTGGATTC+AGG + chr7.4:23625658-23625677 MS.gene024244:CDS 45.0%
! AAGCTCTGATGACAAGATGG+TGG + chr7.4:23626287-23626306 MS.gene024244:CDS 45.0%
GCACTCAACAAGTACGCGAT+CGG - chr7.4:23625694-23625713 None:intergenic 50.0%
GGATCAAACCTGAATCCAGC+AGG - chr7.4:23625669-23625688 None:intergenic 50.0%
TAGACATGCAATTGGAGGGG+AGG + chr7.4:23625958-23625977 MS.gene024244:intron 50.0%
TCAACAAGTACGCGATCGGT+TGG - chr7.4:23625690-23625709 None:intergenic 50.0%
! GCTGAGGTTGATCTACCTGC+TGG + chr7.4:23625651-23625670 MS.gene024244:CDS 55.0%
AAACCTCCTGGCAGCCTCCA+TGG - chr7.4:23625789-23625808 None:intergenic 60.0%
ACTGAGCCATGGAGGCTGCC+AGG + chr7.4:23625780-23625799 MS.gene024244:CDS 65.0%
GAGCCATGGAGGCTGCCAGG+AGG + chr7.4:23625783-23625802 MS.gene024244:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 23625636 23626351 23625636 ID=MS.gene024244
chr7.4 mRNA 23625636 23626351 23625636 ID=MS.gene024244.t1;Parent=MS.gene024244
chr7.4 exon 23625636 23625804 23625636 ID=MS.gene024244.t1.exon1;Parent=MS.gene024244.t1
chr7.4 CDS 23625636 23625804 23625636 ID=cds.MS.gene024244.t1;Parent=MS.gene024244.t1
chr7.4 exon 23626092 23626351 23626092 ID=MS.gene024244.t1.exon2;Parent=MS.gene024244.t1
chr7.4 CDS 23626092 23626351 23626092 ID=cds.MS.gene024244.t1;Parent=MS.gene024244.t1
Gene Sequence

>MS.gene024244

ATGGCGGTAGCTAATGCTGAGGTTGATCTACCTGCTGGATTCAGGTTTGATCCAACCGATCGCGTACTTGTTGAGTGCTACCTGACGAAGAAAATATACAACCAACCTTTTCCAAATGTCATGTCAGAATTTGATATATTTCAAACTGAGCCATGGAGGCTGCCAGGAGGTTTGTGAAAGAAAACAAAAGTTATTTTTCTAATGTTTTTTTAGCCCTTTATTCTCTTTCTTTATGACCATTGTGTGTTTTATCAATAAAAATCAAATTTTCTTAGTGTTCTTTGATGGATTTTCATTGATCTTGAGAATGAACGTTGTGTCTTAGACATGCAATTGGAGGGGAGGAGACTTAAAAATTCCATGAAATGCTTATATGATGTTTTTATGTGGGTAATTAACACAAATTGATTTATTCATTTTGGGTCATTTCAATTTGTTATTTTTTTTTTGTTGCAGAAAATAGATACTCTTTGGAGAATAGGAAGTACTATTTCTTTGATCTCAGGAACCGTAGGTTCGAGAATATGGATGCAAGAAGAGCTGGAAATGGTGAATGGCGAATAGTTCAAAGGAATGAGGAGTTTGCTCATTCAAACAATCAACTGATTGTGAGAAAGAACAGATATGTTTACTGGATAGGGCAAGAAAATCAAGCTCTGATGACAAGATGGTGGATGCATGAATTTGTCATCGGTAGAATTTCTGATCCAACTAGG
Protein sequence

>MS.gene024244.t1

MAVANAEVDLPAGFRFDPTDRVLVECYLTKKIYNQPFPNVMSEFDIFQTEPWRLPGENRYSLENRKYYFFDLRNRRFENMDARRAGNGEWRIVQRNEEFAHSNNQLIVRKNRYVYWIGQENQALMTRWWMHEFVIGRISDPTR