Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024258.t1 | XP_003624470.1 | 84.8 | 296 | 20 | 2 | 1 | 275 | 23 | 314 | 5.90E-124 | 453.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024258.t1 | Q9LW31 | 52.1 | 240 | 65 | 5 | 78 | 275 | 82 | 313 | 9.1e-57 | 221.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024258.t1 | Q2HUJ5 | 84.8 | 296 | 20 | 2 | 1 | 275 | 23 | 314 | 4.2e-124 | 453.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene024258.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024258.t1 | MTR_7g083700 | 89.865 | 296 | 5 | 2 | 1 | 275 | 23 | 314 | 0.0 | 540 |
| MS.gene024258.t1 | MTR_7g059330 | 54.054 | 111 | 51 | 0 | 82 | 192 | 618 | 728 | 1.61e-33 | 129 |
| MS.gene024258.t1 | MTR_2g011940 | 39.394 | 132 | 71 | 3 | 87 | 213 | 352 | 479 | 4.03e-21 | 93.2 |
| MS.gene024258.t1 | MTR_2g011940 | 39.394 | 132 | 71 | 3 | 87 | 213 | 352 | 479 | 4.36e-21 | 93.2 |
| MS.gene024258.t1 | MTR_5g075410 | 49.412 | 85 | 42 | 1 | 87 | 171 | 321 | 404 | 2.51e-20 | 90.9 |
| MS.gene024258.t1 | MTR_4g028130 | 39.806 | 103 | 61 | 1 | 87 | 189 | 314 | 415 | 2.77e-20 | 90.9 |
| MS.gene024258.t1 | MTR_4g088605 | 35.714 | 154 | 91 | 4 | 44 | 191 | 56 | 207 | 4.21e-20 | 87.8 |
| MS.gene024258.t1 | MTR_3g467380 | 40.777 | 103 | 60 | 1 | 87 | 189 | 338 | 439 | 5.18e-20 | 90.1 |
| MS.gene024258.t1 | MTR_2g011940 | 41.463 | 123 | 63 | 3 | 87 | 204 | 343 | 461 | 1.45e-19 | 88.6 |
| MS.gene024258.t1 | MTR_4g028130 | 39.048 | 105 | 63 | 1 | 87 | 191 | 314 | 417 | 6.66e-19 | 86.7 |
| MS.gene024258.t1 | MTR_4g028130 | 39.048 | 105 | 63 | 1 | 87 | 191 | 314 | 417 | 8.45e-19 | 86.7 |
| MS.gene024258.t1 | MTR_7g073240 | 32.500 | 160 | 91 | 4 | 36 | 189 | 74 | 222 | 1.82e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024258.t1 | AT3G26790 | 50.680 | 294 | 100 | 10 | 23 | 275 | 24 | 313 | 9.62e-85 | 256 |
| MS.gene024258.t1 | AT3G24650 | 57.407 | 108 | 46 | 0 | 81 | 188 | 565 | 672 | 8.30e-35 | 132 |
| MS.gene024258.t1 | AT1G28300 | 49.606 | 127 | 64 | 0 | 79 | 205 | 162 | 288 | 1.09e-34 | 128 |
| MS.gene024258.t1 | AT2G30470 | 39.806 | 103 | 61 | 1 | 87 | 189 | 294 | 395 | 1.43e-21 | 94.7 |
| MS.gene024258.t1 | AT4G32010 | 37.500 | 128 | 70 | 2 | 87 | 214 | 281 | 398 | 2.99e-21 | 93.6 |
| MS.gene024258.t1 | AT4G32010 | 37.500 | 128 | 70 | 2 | 87 | 214 | 285 | 402 | 3.00e-21 | 93.6 |
| MS.gene024258.t1 | AT4G21550 | 34.848 | 132 | 79 | 4 | 87 | 218 | 327 | 451 | 1.65e-17 | 82.4 |
| MS.gene024258.t1 | AT4G21550 | 34.848 | 132 | 79 | 4 | 87 | 218 | 327 | 451 | 1.66e-17 | 82.4 |
| MS.gene024258.t1 | AT4G21550 | 38.835 | 103 | 60 | 2 | 87 | 189 | 327 | 426 | 1.79e-17 | 82.4 |
| MS.gene024258.t1 | AT1G13260 | 32.000 | 150 | 92 | 6 | 49 | 193 | 151 | 295 | 2.01e-11 | 63.9 |
| MS.gene024258.t1 | AT4G01500 | 31.405 | 121 | 79 | 3 | 56 | 175 | 4 | 121 | 2.35e-11 | 63.5 |
Find 49 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTTCTTCAACTCCTTT+TGG | 0.172423 | 7.1:+21364534 | None:intergenic |
| TGATCCAATTCTTGAGTAAT+TGG | 0.227933 | 7.1:+21363468 | None:intergenic |
| ATTATCTTGGTAAACCATAA+TGG | 0.319330 | 7.1:+21363826 | None:intergenic |
| GGTTTAGTTGCTGCTGCATT+TGG | 0.326686 | 7.1:-21366561 | MS.gene024258:CDS |
| ATTGGATCAGTTGAAACATT+TGG | 0.328924 | 7.1:-21363454 | MS.gene024258:CDS |
| TACATTCGACTGTTATTGTT+AGG | 0.354796 | 7.1:+21363994 | None:intergenic |
| TGCATTACTACAGGTAATTC+AGG | 0.355023 | 7.1:-21363689 | MS.gene024258:intron |
| ATGACCAATTACTCAAGAAT+TGG | 0.363460 | 7.1:-21363472 | MS.gene024258:CDS |
| ACGCTTTGGAGACTCCATTA+TGG | 0.373590 | 7.1:-21363840 | MS.gene024258:CDS |
| GAATTCCTTCCTTCGATTCA+AGG | 0.374741 | 7.1:+21364331 | None:intergenic |
| CTGCATTTGGAACTGTTCAT+AGG | 0.379357 | 7.1:-21366548 | MS.gene024258:CDS |
| AACAACAACAACAAGATTAA+CGG | 0.429296 | 7.1:-21366612 | MS.gene024258:CDS |
| AGCACACATGGTCTACGCTT+TGG | 0.436188 | 7.1:-21363854 | MS.gene024258:CDS |
| TTGTGATCAAGATGAGTATA+TGG | 0.437591 | 7.1:-21363656 | MS.gene024258:CDS |
| CCTTCCTTCGATTCAAGGAC+AGG | 0.443951 | 7.1:+21364336 | None:intergenic |
| GAACTGTTCATAGGAAGAAA+AGG | 0.451838 | 7.1:-21366539 | MS.gene024258:CDS |
| GTTTATAGGAAATCGATCAT+AGG | 0.469630 | 7.1:-21364574 | MS.gene024258:intron |
| ATATAGATGGTCTTCATGTA+TGG | 0.471743 | 7.1:-21364293 | MS.gene024258:CDS |
| ACAACAACAACAAGATTAAC+GGG | 0.472192 | 7.1:-21366611 | MS.gene024258:CDS |
| TATCTTCGTCGATGATTATG+AGG | 0.472524 | 7.1:-21363608 | MS.gene024258:CDS |
| TCTCTTGATGACTTCTATTG+AGG | 0.486619 | 7.1:-21363415 | None:intergenic |
| ATGTATGGAGTTTCAAGTAC+AGG | 0.489515 | 7.1:-21364278 | MS.gene024258:intron |
| GAGGCGTGTGGTTTCATGGC+AGG | 0.489847 | 7.1:-21366675 | None:intergenic |
| CTCAGCATGAATGATATAGA+TGG | 0.492894 | 7.1:-21364306 | MS.gene024258:CDS |
| ATACTTGTATCATTCATTGC+AGG | 0.501561 | 7.1:+21363556 | None:intergenic |
| CCTTCCTGTCCTTGAATCGA+AGG | 0.505006 | 7.1:-21364340 | MS.gene024258:CDS |
| TAGGAGAATGGTGTTGCCTA+AGG | 0.511895 | 7.1:-21364498 | MS.gene024258:intron |
| TAGGCAACACCATTCTCCTA+AGG | 0.515359 | 7.1:+21364501 | None:intergenic |
| AGATTAACGGGTCGGGTCAA+CGG | 0.518369 | 7.1:-21366599 | MS.gene024258:CDS |
| TGTTAGCTCCCTTAGGAGAA+TGG | 0.536299 | 7.1:-21364510 | MS.gene024258:CDS |
| CAACGGATCCATCATGATCA+TGG | 0.538714 | 7.1:-21366582 | MS.gene024258:CDS |
| CTAGGGTTTGTCAACGTGAA+AGG | 0.540011 | 7.1:-21366639 | MS.gene024258:CDS |
| GGAGACTTTGTTAGCACACA+TGG | 0.544519 | 7.1:-21363866 | MS.gene024258:CDS |
| GCAGGTGTTGAAGATGAACT+AGG | 0.544873 | 7.1:-21366657 | MS.gene024258:CDS |
| CAACTAAACCATGATCATGA+TGG | 0.545398 | 7.1:+21366574 | None:intergenic |
| AACAACAAGATTAACGGGTC+GGG | 0.549708 | 7.1:-21366606 | MS.gene024258:CDS |
| ATAGGAAGAAAAGGATGGCT+AGG | 0.560627 | 7.1:-21366530 | MS.gene024258:CDS |
| CAACAACAAGATTAACGGGT+CGG | 0.560654 | 7.1:-21366607 | MS.gene024258:CDS |
| ACAGTGATGTTAGCTCCCTT+AGG | 0.583324 | 7.1:-21364517 | MS.gene024258:CDS |
| CAGGTGTTGAAGATGAACTA+GGG | 0.583873 | 7.1:-21366656 | MS.gene024258:CDS |
| CCTGTCCTTGAATCGAAGGA+AGG | 0.585425 | 7.1:-21364336 | MS.gene024258:CDS |
| TATAGGAAATCGATCATAGG+AGG | 0.597683 | 7.1:-21364571 | MS.gene024258:intron |
| AGGCAACACCATTCTCCTAA+GGG | 0.607377 | 7.1:+21364502 | None:intergenic |
| CCTTCGATTCAAGGACAGGA+AGG | 0.620428 | 7.1:+21364340 | None:intergenic |
| TGGAGAGATTGGCACGTGCG+AGG | 0.625104 | 7.1:+21366437 | None:intergenic |
| ATGTATGTACTTGAAAACAC+TGG | 0.631186 | 7.1:-21363976 | MS.gene024258:intron |
| TGTTCATAGGAAGAAAAGGA+TGG | 0.632115 | 7.1:-21366535 | MS.gene024258:CDS |
| AAGTGGTGAGTCATTTGAGA+TGG | 0.633283 | 7.1:+21363513 | None:intergenic |
| TAACTTGCAGAAAGCAGCAG+AGG | 0.635910 | 7.1:-21364367 | MS.gene024258:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTTATTATATTATA+AGG | + | chr7.1:21365689-21365708 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAAAACTTCT+TGG | + | chr7.1:21363981-21364000 | None:intergenic | 10.0% |
| !! | AGTAATAATATGTATAAAAA+TGG | - | chr7.1:21364337-21364356 | MS.gene024258:CDS | 10.0% |
| !!! | TTAAAATATTTGATGATTAT+TGG | - | chr7.1:21365171-21365190 | MS.gene024258:intron | 10.0% |
| !!! | TTTTTATACATATTATTACT+TGG | + | chr7.1:21364337-21364356 | None:intergenic | 10.0% |
| !! | AAAATCTATACAATTAACAT+CGG | + | chr7.1:21363860-21363879 | None:intergenic | 15.0% |
| !! | AAATTAGTTAATACCATAAA+TGG | - | chr7.1:21365461-21365480 | MS.gene024258:intron | 15.0% |
| !! | AAATTTAATGCAATTACATT+CGG | - | chr7.1:21365880-21365899 | MS.gene024258:intron | 15.0% |
| !! | ATATGTATAAAAATGGAAAA+AGG | - | chr7.1:21364344-21364363 | MS.gene024258:CDS | 15.0% |
| !! | ATTATATTATAAGGTTATGA+TGG | + | chr7.1:21365680-21365699 | None:intergenic | 15.0% |
| !! | TGTTAATTAATACTATTCAT+CGG | - | chr7.1:21364507-21364526 | MS.gene024258:CDS | 15.0% |
| !! | TGTTGGATATAAATATAATA+TGG | - | chr7.1:21365315-21365334 | MS.gene024258:intron | 15.0% |
| !!! | AATTACGAAAGTTAATTTTA+CGG | - | chr7.1:21364907-21364926 | MS.gene024258:intron | 15.0% |
| !!! | TGAATGAATAAACATTATTT+TGG | + | chr7.1:21364449-21364468 | None:intergenic | 15.0% |
| !!! | TTAGTTTGTTAAATATTTTC+AGG | - | chr7.1:21366190-21366209 | MS.gene024258:intron | 15.0% |
| !! | AATTGCATTAAATTTCATTC+TGG | + | chr7.1:21365875-21365894 | None:intergenic | 20.0% |
| !! | ATAATTAAATAAAAGGGAAG+TGG | - | chr7.1:21364200-21364219 | MS.gene024258:intron | 20.0% |
| !! | CAATTCAAAAGATTAATCTT+TGG | + | chr7.1:21364040-21364059 | None:intergenic | 20.0% |
| !! | TTAACTATATCAATGTGTAT+AGG | - | chr7.1:21364593-21364612 | MS.gene024258:intron | 20.0% |
| !!! | AAATATTTGATGATTATTGG+TGG | - | chr7.1:21365174-21365193 | MS.gene024258:intron | 20.0% |
| !!! | AAGTAATGCTTATAGAATTT+TGG | - | chr7.1:21364552-21364571 | MS.gene024258:CDS | 20.0% |
| !!! | AATTGTACTTTAAAGTCATT+TGG | - | chr7.1:21365984-21366003 | MS.gene024258:intron | 20.0% |
| !!! | AATTGTGATTTTGATTATCT+TGG | + | chr7.1:21366267-21366286 | None:intergenic | 20.0% |
| !!! | ACAATTTTCATTCTGTTTAT+AGG | - | chr7.1:21365489-21365508 | MS.gene024258:intron | 20.0% |
| !!! | ATTACGAAAGTTAATTTTAC+GGG | - | chr7.1:21364908-21364927 | MS.gene024258:intron | 20.0% |
| !!! | ATTGTACTTTAAAGTCATTT+GGG | - | chr7.1:21365985-21366004 | MS.gene024258:intron | 20.0% |
| !!! | CAAAGATTAATCTTTTGAAT+TGG | - | chr7.1:21364038-21364057 | MS.gene024258:intron | 20.0% |
| ! | AAACAGAATGAAAATTGTCA+AGG | + | chr7.1:21365487-21365506 | None:intergenic | 25.0% |
| ! | AACAACAACAACAAGATTAA+CGG | - | chr7.1:21363465-21363484 | MS.gene024258:CDS | 25.0% |
| ! | AATTCAGAAGTCAATTTCAT+AGG | - | chr7.1:21364744-21364763 | MS.gene024258:intron | 25.0% |
| ! | AATTCAGAAGTCTATTCTAT+GGG | - | chr7.1:21364622-21364641 | MS.gene024258:intron | 25.0% |
| ! | ACATAAATTCCCAAATGTAA+AGG | + | chr7.1:21365209-21365228 | None:intergenic | 25.0% |
| ! | ATAAAAATGGAAAAAGGAAG+AGG | - | chr7.1:21364350-21364369 | MS.gene024258:CDS | 25.0% |
| ! | ATAGTTAAACCAAAAAGACA+AGG | + | chr7.1:21364581-21364600 | None:intergenic | 25.0% |
| ! | ATTATCTTGGTAAACCATAA+TGG | + | chr7.1:21366254-21366273 | None:intergenic | 25.0% |
| ! | TAAATAGAGCCTTTACATTT+GGG | - | chr7.1:21365197-21365216 | MS.gene024258:intron | 25.0% |
| ! | TAATTCTATTTCAATACTGC+AGG | - | chr7.1:21366054-21366073 | MS.gene024258:intron | 25.0% |
| ! | TACTAGTAGTTTGATCTTAA+TGG | - | chr7.1:21363918-21363937 | MS.gene024258:intron | 25.0% |
| ! | TGACAGGAAAAAAAAATACA+TGG | + | chr7.1:21366366-21366385 | None:intergenic | 25.0% |
| !! | TTATCTTCATTTTCTTGTGT+GGG | + | chr7.1:21364146-21364165 | None:intergenic | 25.0% |
| !! | TTTATCTTCATTTTCTTGTG+TGG | + | chr7.1:21364147-21364166 | None:intergenic | 25.0% |
| !! | TTTTTATTATCTGTCCTAGT+TGG | - | chr7.1:21363754-21363773 | MS.gene024258:intron | 25.0% |
| !!! | ATTTCGAAAGTCGATTTTAT+TGG | - | chr7.1:21364842-21364861 | MS.gene024258:intron | 25.0% |
| !!! | ATTTTTGAGATGAATAGTGA+TGG | + | chr7.1:21363595-21363614 | None:intergenic | 25.0% |
| AAAATTGTCAAGGCCATTTA+TGG | + | chr7.1:21365477-21365496 | None:intergenic | 30.0% | |
| ACAACAACAACAAGATTAAC+GGG | - | chr7.1:21363466-21363485 | MS.gene024258:CDS | 30.0% | |
| AGCAAAGTTTAACTCTCAAA+TGG | + | chr7.1:21366160-21366179 | None:intergenic | 30.0% | |
| AGTAAATGCTGCAAAAAGTT+GGG | + | chr7.1:21365408-21365427 | None:intergenic | 30.0% | |
| ATACTTGTATCATTCATTGC+AGG | + | chr7.1:21366524-21366543 | None:intergenic | 30.0% | |
| ATATAGATGGTCTTCATGTA+TGG | - | chr7.1:21365784-21365803 | MS.gene024258:intron | 30.0% | |
| ATGACCAATTACTCAAGAAT+TGG | - | chr7.1:21366605-21366624 | MS.gene024258:CDS | 30.0% | |
| ATGTATGTACTTGAAAACAC+TGG | - | chr7.1:21366101-21366120 | MS.gene024258:intron | 30.0% | |
| ATTGGATCAGTTGAAACATT+TGG | - | chr7.1:21366623-21366642 | MS.gene024258:CDS | 30.0% | |
| CAATTCAGAAGTCTATTCTA+TGG | - | chr7.1:21364621-21364640 | MS.gene024258:intron | 30.0% | |
| GAAATGAAGTCTATAAGCAA+AGG | + | chr7.1:21365610-21365629 | None:intergenic | 30.0% | |
| GTAAATAGAGCCTTTACATT+TGG | - | chr7.1:21365196-21365215 | MS.gene024258:intron | 30.0% | |
| GTATTTCAAGATAAGCCATA+AGG | - | chr7.1:21365227-21365246 | MS.gene024258:intron | 30.0% | |
| GTCAATCATTCTTTATCTGA+CGG | + | chr7.1:21365954-21365973 | None:intergenic | 30.0% | |
| GTTTATAGGAAATCGATCAT+AGG | - | chr7.1:21365503-21365522 | MS.gene024258:intron | 30.0% | |
| TACATTCGACTGTTATTGTT+AGG | + | chr7.1:21366086-21366105 | None:intergenic | 30.0% | |
| TAGTAAATGCTGCAAAAAGT+TGG | + | chr7.1:21365409-21365428 | None:intergenic | 30.0% | |
| TGACGTATACATGATATAGT+TGG | + | chr7.1:21364770-21364789 | None:intergenic | 30.0% | |
| TGATCCAATTCTTGAGTAAT+TGG | + | chr7.1:21366612-21366631 | None:intergenic | 30.0% | |
| TTGTGATCAAGATGAGTATA+TGG | - | chr7.1:21366421-21366440 | MS.gene024258:intron | 30.0% | |
| ! | AAGTTAATTTTACGGGTCAA+CGG | - | chr7.1:21364915-21364934 | MS.gene024258:intron | 30.0% |
| ! | AAGTTTTTGCAAATCCAACT+AGG | + | chr7.1:21363771-21363790 | None:intergenic | 30.0% |
| ! | TATTTCAATACTGCAGGTTT+TGG | - | chr7.1:21366060-21366079 | MS.gene024258:intron | 30.0% |
| !! | AAGTCGATTTTATTGGTCAA+CGG | - | chr7.1:21364849-21364868 | MS.gene024258:intron | 30.0% |
| !! | ATTTCGGAAGTCGATTTTAT+GGG | - | chr7.1:21364793-21364812 | MS.gene024258:intron | 30.0% |
| !! | CTACTCATTTTAGAAGTCAA+CGG | - | chr7.1:21364665-21364684 | MS.gene024258:intron | 30.0% |
| !! | TTTTAACTCTTTGCTAGAAG+AGG | - | chr7.1:21364374-21364393 | MS.gene024258:intron | 30.0% |
| AAGAACTTCGTCATCTATTG+TGG | + | chr7.1:21364070-21364089 | None:intergenic | 35.0% | |
| AGAAAAAAAACTCACACGTG+CGG | + | chr7.1:21363694-21363713 | None:intergenic | 35.0% | |
| AGATTTAGGGAACCAAAAGT+AGG | + | chr7.1:21365136-21365155 | None:intergenic | 35.0% | |
| ATAAAAGGGAAGTGGATGTA+TGG | - | chr7.1:21364208-21364227 | MS.gene024258:intron | 35.0% | |
| ATCGAGTCGATCTAAGTTAT+TGG | + | chr7.1:21365038-21365057 | None:intergenic | 35.0% | |
| CAACTAAACCATGATCATGA+TGG | + | chr7.1:21363506-21363525 | None:intergenic | 35.0% | |
| CACGTATATGCTACTCATTT+CGG | - | chr7.1:21364691-21364710 | MS.gene024258:intron | 35.0% | |
| CATGTATACGTCACTCATTT+CGG | - | chr7.1:21364777-21364796 | MS.gene024258:intron | 35.0% | |
| CTCAGCATGAATGATATAGA+TGG | - | chr7.1:21365771-21365790 | MS.gene024258:intron | 35.0% | |
| GAACTGTTCATAGGAAGAAA+AGG | - | chr7.1:21363538-21363557 | MS.gene024258:CDS | 35.0% | |
| GAATGAAAAAGAGGTGGAAT+TGG | + | chr7.1:21363663-21363682 | None:intergenic | 35.0% | |
| GGGTGTGTATAAATTAGTGT+AGG | + | chr7.1:21364126-21364145 | None:intergenic | 35.0% | |
| GTAGTAGTAGTAGTAGAAGA+AGG | + | chr7.1:21363621-21363640 | None:intergenic | 35.0% | |
| TAAAAGGGAAGTGGATGTAT+GGG | - | chr7.1:21364209-21364228 | MS.gene024258:intron | 35.0% | |
| TATAGGAAATCGATCATAGG+AGG | - | chr7.1:21365506-21365525 | MS.gene024258:intron | 35.0% | |
| TATATGCTACTCATTTCGGA+AGG | - | chr7.1:21364695-21364714 | MS.gene024258:intron | 35.0% | |
| TATCTTCGTCGATGATTATG+AGG | - | chr7.1:21366469-21366488 | MS.gene024258:CDS | 35.0% | |
| TCTCGATCGTTTATAGAGAT+CGG | - | chr7.1:21364954-21364973 | MS.gene024258:intron | 35.0% | |
| TGCATTACTACAGGTAATTC+AGG | - | chr7.1:21366388-21366407 | MS.gene024258:intron | 35.0% | |
| TGTTCATAGGAAGAAAAGGA+TGG | - | chr7.1:21363542-21363561 | MS.gene024258:CDS | 35.0% | |
| TTTACTCGATGCTCTTATGT+TGG | - | chr7.1:21365298-21365317 | MS.gene024258:intron | 35.0% | |
| ! | AAGCTGAAAACTCCTACTTT+TGG | - | chr7.1:21365121-21365140 | MS.gene024258:intron | 35.0% |
| ! | ATGTATGGAGTTTCAAGTAC+AGG | - | chr7.1:21365799-21365818 | MS.gene024258:intron | 35.0% |
| ! | GTTGAGATTCCTTTTCCAAA+AGG | - | chr7.1:21365528-21365547 | MS.gene024258:intron | 35.0% |
| !! | CAACGGTGTTAAGTCATTTT+AGG | + | chr7.1:21364093-21364112 | None:intergenic | 35.0% |
| !! | CATTTCGGAAGTCGATTTTA+TGG | - | chr7.1:21364792-21364811 | MS.gene024258:intron | 35.0% |
| !! | TCTTCAACTCCTTTTGGAAA+AGG | + | chr7.1:21365540-21365559 | None:intergenic | 35.0% |
| !! | TTTTGGTGACCTTGTCTTTT+TGG | - | chr7.1:21364569-21364588 | MS.gene024258:CDS | 35.0% |
| !!! | CTTTTGGTTCCCTAAATCTT+TGG | - | chr7.1:21365137-21365156 | MS.gene024258:intron | 35.0% |
| !!! | GACTCACCACTTGATTTTTT+GGG | - | chr7.1:21366575-21366594 | MS.gene024258:CDS | 35.0% |
| !!! | TGACTCACCACTTGATTTTT+TGG | - | chr7.1:21366574-21366593 | MS.gene024258:CDS | 35.0% |
| AAAGAGTAACGGTGGTAAAG+AGG | + | chr7.1:21365281-21365300 | None:intergenic | 40.0% | |
| AAGTGGTGAGTCATTTGAGA+TGG | + | chr7.1:21366567-21366586 | None:intergenic | 40.0% | |
| ACACCACCACCAAAGATTTA+GGG | + | chr7.1:21365149-21365168 | None:intergenic | 40.0% | |
| AGGCAGAATCTATGTCTGTA+CGG | - | chr7.1:21364394-21364413 | MS.gene024258:intron | 40.0% | |
| ATAAGCAAAGGTCAGACCTT+AGG | + | chr7.1:21365598-21365617 | None:intergenic | 40.0% | |
| ATAGGAAGAAAAGGATGGCT+AGG | - | chr7.1:21363547-21363566 | MS.gene024258:CDS | 40.0% | |
| CCTGTAGTAATGCATATGAC+AGG | + | chr7.1:21366382-21366401 | None:intergenic | 40.0% | |
| CCTGTCATATGCATTACTAC+AGG | - | chr7.1:21366379-21366398 | MS.gene024258:intron | 40.0% | |
| CTGCTATGTGCATACATTGT+TGG | - | chr7.1:21365823-21365842 | MS.gene024258:intron | 40.0% | |
| CTTAGTCAATGTCTAGTCCT+TGG | - | chr7.1:21365098-21365117 | MS.gene024258:intron | 40.0% | |
| GAAAAAAAACTCACACGTGC+GGG | + | chr7.1:21363693-21363712 | None:intergenic | 40.0% | |
| GAATTCCTTCCTTCGATTCA+AGG | + | chr7.1:21365749-21365768 | None:intergenic | 40.0% | |
| GATCCACCCAAAAAATCAAG+TGG | + | chr7.1:21366584-21366603 | None:intergenic | 40.0% | |
| GTGTAGGTCTGAGAATACAA+CGG | + | chr7.1:21364110-21364129 | None:intergenic | 40.0% | |
| TCACGTGACTTTCGCAAATT+GGG | + | chr7.1:21364999-21365018 | None:intergenic | 40.0% | |
| TGTACAGTCACACACTTACA+CGG | - | chr7.1:21365915-21365934 | MS.gene024258:intron | 40.0% | |
| TTGGTTCCCTAAATCTTTGG+TGG | - | chr7.1:21365140-21365159 | MS.gene024258:intron | 40.0% | |
| ! | AACAACAAGATTAACGGGTC+GGG | - | chr7.1:21363471-21363490 | MS.gene024258:CDS | 40.0% |
| ! | CAACAACAAGATTAACGGGT+CGG | - | chr7.1:21363470-21363489 | MS.gene024258:CDS | 40.0% |
| ! | CACTGTTCTTCAACTCCTTT+TGG | + | chr7.1:21365546-21365565 | None:intergenic | 40.0% |
| ! | CTGCATTTGGAACTGTTCAT+AGG | - | chr7.1:21363529-21363548 | MS.gene024258:CDS | 40.0% |
| !! | CAGGTGTTGAAGATGAACTA+GGG | - | chr7.1:21363421-21363440 | MS.gene024258:CDS | 40.0% |
| !! | GAGCATCGAGTAAAGAGTAA+CGG | + | chr7.1:21365292-21365311 | None:intergenic | 40.0% |
| !!! | ATTATTTTGGTCATTGCCCG+TGG | + | chr7.1:21364436-21364455 | None:intergenic | 40.0% |
| !!! | TCACCACTTGATTTTTTGGG+TGG | - | chr7.1:21366578-21366597 | MS.gene024258:CDS | 40.0% |
| ACAGTGATGTTAGCTCCCTT+AGG | - | chr7.1:21365560-21365579 | MS.gene024258:intron | 45.0% | |
| AGAGGTGGAATTGGAGAGAT+TGG | + | chr7.1:21363654-21363673 | None:intergenic | 45.0% | |
| AGGCAACACCATTCTCCTAA+GGG | + | chr7.1:21365578-21365597 | None:intergenic | 45.0% | |
| AGGCATGCTAGACAATGCTT+TGG | - | chr7.1:21365247-21365266 | MS.gene024258:intron | 45.0% | |
| CAACGGATCCATCATGATCA+TGG | - | chr7.1:21363495-21363514 | MS.gene024258:CDS | 45.0% | |
| CACACCACCACCAAAGATTT+AGG | + | chr7.1:21365150-21365169 | None:intergenic | 45.0% | |
| CATCGAGTAAAGAGTAACGG+TGG | + | chr7.1:21365289-21365308 | None:intergenic | 45.0% | |
| CTAGGGTTTGTCAACGTGAA+AGG | - | chr7.1:21363438-21363457 | MS.gene024258:CDS | 45.0% | |
| CTCACGTGACTTTCGCAAAT+TGG | + | chr7.1:21365000-21365019 | None:intergenic | 45.0% | |
| GCATTGTCTAGCATGCCTTA+TGG | + | chr7.1:21365245-21365264 | None:intergenic | 45.0% | |
| GGAGACTTTGTTAGCACACA+TGG | - | chr7.1:21366211-21366230 | MS.gene024258:intron | 45.0% | |
| GGAGGGAGAGAATGAAAAAG+AGG | + | chr7.1:21363672-21363691 | None:intergenic | 45.0% | |
| GGCATGCTAGACAATGCTTT+GGG | - | chr7.1:21365248-21365267 | MS.gene024258:intron | 45.0% | |
| GGGAGAGAATGAAAAAGAGG+TGG | + | chr7.1:21363669-21363688 | None:intergenic | 45.0% | |
| GGTTTAGTTGCTGCTGCATT+TGG | - | chr7.1:21363516-21363535 | MS.gene024258:CDS | 45.0% | |
| GTTCCCTAAATCTTTGGTGG+TGG | - | chr7.1:21365143-21365162 | MS.gene024258:intron | 45.0% | |
| TAGGCAACACCATTCTCCTA+AGG | + | chr7.1:21365579-21365598 | None:intergenic | 45.0% | |
| TGTTAGCTCCCTTAGGAGAA+TGG | - | chr7.1:21365567-21365586 | MS.gene024258:intron | 45.0% | |
| ! | GTAGGAGTTTTCAGCTTCCA+AGG | + | chr7.1:21365118-21365137 | None:intergenic | 45.0% |
| ! | TAACTTGCAGAAAGCAGCAG+AGG | - | chr7.1:21365710-21365729 | MS.gene024258:intron | 45.0% |
| !! | ACGCTTTGGAGACTCCATTA+TGG | - | chr7.1:21366237-21366256 | MS.gene024258:intron | 45.0% |
| !! | CTAAATCTTTGGTGGTGGTG+TGG | - | chr7.1:21365148-21365167 | MS.gene024258:intron | 45.0% |
| !! | GCAGGTGTTGAAGATGAACT+AGG | - | chr7.1:21363420-21363439 | MS.gene024258:CDS | 45.0% |
| !! | TAGGAGAATGGTGTTGCCTA+AGG | - | chr7.1:21365579-21365598 | MS.gene024258:intron | 45.0% |
| !! | AAATACAATAATTAAATAAA+AGG | - | chr7.1:21364193-21364212 | MS.gene024258:intron | 5.0% |
| !! | AATACAATAATTAAATAAAA+GGG | - | chr7.1:21364194-21364213 | MS.gene024258:intron | 5.0% |
| AAAAAACTCACACGTGCGGG+AGG | + | chr7.1:21363690-21363709 | None:intergenic | 50.0% | |
| AAAAACTCACACGTGCGGGA+GGG | + | chr7.1:21363689-21363708 | None:intergenic | 50.0% | |
| AATTTGCCTCGTGGATCCAC+GGG | - | chr7.1:21364417-21364436 | MS.gene024258:intron | 50.0% | |
| AGCACACATGGTCTACGCTT+TGG | - | chr7.1:21366223-21366242 | MS.gene024258:intron | 50.0% | |
| CCTGTCCTTGAATCGAAGGA+AGG | - | chr7.1:21365741-21365760 | MS.gene024258:intron | 50.0% | |
| CCTTCCTGTCCTTGAATCGA+AGG | - | chr7.1:21365737-21365756 | MS.gene024258:intron | 50.0% | |
| CCTTCCTTCGATTCAAGGAC+AGG | + | chr7.1:21365744-21365763 | None:intergenic | 50.0% | |
| CCTTCGATTCAAGGACAGGA+AGG | + | chr7.1:21365740-21365759 | None:intergenic | 50.0% | |
| GAATTTGCCTCGTGGATCCA+CGG | - | chr7.1:21364416-21364435 | MS.gene024258:intron | 50.0% | |
| TCTGTACGGAATTTGCCTCG+TGG | - | chr7.1:21364408-21364427 | MS.gene024258:intron | 50.0% | |
| ! | AGATTAACGGGTCGGGTCAA+CGG | - | chr7.1:21363478-21363497 | MS.gene024258:CDS | 50.0% |
| TCATTGCCCGTGGATCCACG+AGG | + | chr7.1:21364426-21364445 | None:intergenic | 60.0% | |
| TGGAGAGATTGGCACGTGCG+AGG | + | chr7.1:21363643-21363662 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 21363417 | 21366682 | 21363417 | ID=MS.gene024258 |
| chr7.1 | mRNA | 21363417 | 21366682 | 21363417 | ID=MS.gene024258.t1;Parent=MS.gene024258 |
| chr7.1 | exon | 21366452 | 21366682 | 21366452 | ID=MS.gene024258.t1.exon1;Parent=MS.gene024258.t1 |
| chr7.1 | CDS | 21366452 | 21366682 | 21366452 | ID=cds.MS.gene024258.t1;Parent=MS.gene024258.t1 |
| chr7.1 | exon | 21364499 | 21364588 | 21364499 | ID=MS.gene024258.t1.exon2;Parent=MS.gene024258.t1 |
| chr7.1 | CDS | 21364499 | 21364588 | 21364499 | ID=cds.MS.gene024258.t1;Parent=MS.gene024258.t1 |
| chr7.1 | exon | 21364279 | 21364379 | 21364279 | ID=MS.gene024258.t1.exon3;Parent=MS.gene024258.t1 |
| chr7.1 | CDS | 21364279 | 21364379 | 21364279 | ID=cds.MS.gene024258.t1;Parent=MS.gene024258.t1 |
| chr7.1 | exon | 21363977 | 21364023 | 21363977 | ID=MS.gene024258.t1.exon4;Parent=MS.gene024258.t1 |
| chr7.1 | CDS | 21363977 | 21364023 | 21363977 | ID=cds.MS.gene024258.t1;Parent=MS.gene024258.t1 |
| chr7.1 | exon | 21363811 | 21363887 | 21363811 | ID=MS.gene024258.t1.exon5;Parent=MS.gene024258.t1 |
| chr7.1 | CDS | 21363811 | 21363887 | 21363811 | ID=cds.MS.gene024258.t1;Parent=MS.gene024258.t1 |
| chr7.1 | exon | 21363417 | 21363698 | 21363417 | ID=MS.gene024258.t1.exon6;Parent=MS.gene024258.t1 |
| chr7.1 | CDS | 21363417 | 21363698 | 21363417 | ID=cds.MS.gene024258.t1;Parent=MS.gene024258.t1 |
| Gene Sequence |
| Protein sequence |
