Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024286.t1 | XP_003624511.2 | 99.5 | 198 | 1 | 0 | 1 | 198 | 23 | 220 | 7.70E-110 | 406.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024286.t1 | O80438 | 86.8 | 159 | 21 | 0 | 13 | 171 | 8 | 166 | 7.9e-79 | 294.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024286.t1 | G7KXA5 | 99.5 | 198 | 1 | 0 | 1 | 198 | 1 | 198 | 5.6e-110 | 406.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene024286.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024286.t1 | MTR_7g084140 | 99.495 | 198 | 1 | 0 | 1 | 198 | 1 | 198 | 1.33e-147 | 408 |
| MS.gene024286.t1 | MTR_3g034200 | 32.117 | 137 | 90 | 3 | 43 | 176 | 23 | 159 | 1.10e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024286.t1 | AT2G38130 | 86.076 | 158 | 22 | 0 | 16 | 173 | 11 | 168 | 6.91e-103 | 295 |
| MS.gene024286.t1 | AT2G38130 | 86.076 | 158 | 22 | 0 | 16 | 173 | 11 | 168 | 6.91e-103 | 295 |
| MS.gene024286.t1 | AT5G13780 | 31.746 | 126 | 83 | 3 | 43 | 165 | 23 | 148 | 6.72e-11 | 59.3 |
Find 49 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCCGCCTTGGCTTTATT+AGG | 0.293449 | 7.1:+20978468 | MS.gene024286:CDS |
| TGGCCGCCTTGGCTTTATTA+GGG | 0.308261 | 7.1:+20978469 | MS.gene024286:CDS |
| GATTTCTGTTTCGTCTTTGT+TGG | 0.315027 | 7.1:-20975443 | None:intergenic |
| GGGCACGGTGGTTTGTAAAA+TGG | 0.322086 | 7.1:+20975765 | MS.gene024286:CDS |
| TCTAGAGGTGCGTGCAAGTC+TGG | 0.341191 | 7.1:-20978560 | None:intergenic |
| GGCACGGTGGTTTGTAAAAT+GGG | 0.366067 | 7.1:+20975766 | MS.gene024286:CDS |
| GAAGCAGAAGTCACAAATAA+AGG | 0.367029 | 7.1:+20978431 | MS.gene024286:CDS |
| CTTGCTCTGTATGGCCGCCT+TGG | 0.385195 | 7.1:+20978458 | MS.gene024286:CDS |
| ATCGCTACTTCGTCTATCTA+TGG | 0.412371 | 7.1:+20975587 | MS.gene024286:CDS |
| ATTTCTGTTTCGTCTTTGTT+GGG | 0.419367 | 7.1:-20975442 | None:intergenic |
| CTAGACTCACCGGATAAATA+CGG | 0.441585 | 7.1:+20978578 | MS.gene024286:CDS |
| CCAATGCCTCTTCCTCTGTA+GGG | 0.454470 | 7.1:-20975841 | None:intergenic |
| CGCTGAGTTCTTCGTCGACA+AGG | 0.454965 | 7.1:-20975543 | None:intergenic |
| CAGCCACAGAACTTGTTACT+AGG | 0.457121 | 7.1:+20976281 | MS.gene024286:intron |
| CGATAGGTGAAGATGGAGTA+AGG | 0.474230 | 7.1:-20975568 | None:intergenic |
| ATGTGGCTCCCGTATTTATC+CGG | 0.481987 | 7.1:-20978587 | None:intergenic |
| AAAGGAGCACTTGCTCTGTA+TGG | 0.485924 | 7.1:+20978449 | MS.gene024286:CDS |
| ATCAAAGTGATGATGGAATC+TGG | 0.488662 | 7.1:+20976307 | MS.gene024286:CDS |
| CCCTACAGAGGAAGAGGCAT+TGG | 0.495396 | 7.1:+20975841 | MS.gene024286:CDS |
| TAGGTCTATCAAAGTGATGA+TGG | 0.496415 | 7.1:+20976300 | MS.gene024286:CDS |
| GAAGTAGCGATAGGTGAAGA+TGG | 0.509096 | 7.1:-20975575 | None:intergenic |
| ACCAATGCCTCTTCCTCTGT+AGG | 0.521245 | 7.1:-20975842 | None:intergenic |
| ATCAAACCCTACAGAGGAAG+AGG | 0.528144 | 7.1:+20975835 | MS.gene024286:CDS |
| TTTCATAAGGGTAAATGTGT+GGG | 0.560965 | 7.1:+20975745 | MS.gene024286:CDS |
| CAAGGTTCATGATGAGAGGT+AGG | 0.571066 | 7.1:-20975525 | None:intergenic |
| TATACATTAACAGGTTACAT+TGG | 0.574035 | 7.1:+20978409 | MS.gene024286:intron |
| GTAGCTGATGTATTCAATCT+CGG | 0.580445 | 7.1:-20975488 | None:intergenic |
| TAGACTCACCGGATAAATAC+GGG | 0.590980 | 7.1:+20978579 | MS.gene024286:CDS |
| GCACGCACCTCTAGACTCAC+CGG | 0.601943 | 7.1:+20978568 | MS.gene024286:CDS |
| TAAGGGTAAATGTGTGGGCA+CGG | 0.602307 | 7.1:+20975750 | MS.gene024286:CDS |
| CGCCACGATCACTATGCATG+TGG | 0.608007 | 7.1:-20978604 | None:intergenic |
| GAGATTGAATACATCAGCTA+CGG | 0.624186 | 7.1:+20975490 | MS.gene024286:CDS |
| TATTTATCCGGTGAGTCTAG+AGG | 0.626348 | 7.1:-20978575 | None:intergenic |
| GGTGCGTGCAAGTCTGGACG+AGG | 0.630380 | 7.1:-20978554 | None:intergenic |
| GAGGAAATAAAAGTTTAAGA+CGG | 0.630576 | 7.1:-20978535 | None:intergenic |
| GCTTAGCCCTAATAAAGCCA+AGG | 0.631068 | 7.1:-20978475 | None:intergenic |
| TAGATAGACGAAGTAGCGAT+AGG | 0.633007 | 7.1:-20975584 | None:intergenic |
| AGCCACATGCATAGTGATCG+TGG | 0.635530 | 7.1:+20978602 | MS.gene024286:CDS |
| TCGACAAGGTTCATGATGAG+AGG | 0.638163 | 7.1:-20975529 | None:intergenic |
| CACGGTGGTTTGTAAAATGG+GGG | 0.647644 | 7.1:+20975768 | MS.gene024286:CDS |
| GTTGTTATCAAACCCTACAG+AGG | 0.653909 | 7.1:+20975829 | MS.gene024286:CDS |
| GCACGGTGGTTTGTAAAATG+GGG | 0.655026 | 7.1:+20975767 | MS.gene024286:CDS |
| ATTGAATACATCAGCTACGG+CGG | 0.665233 | 7.1:+20975493 | MS.gene024286:CDS |
| AGACCTAGTAACAAGTTCTG+TGG | 0.674745 | 7.1:-20976284 | None:intergenic |
| GGTACCAGAAAAGAAAGATG+AGG | 0.680873 | 7.1:-20975610 | None:intergenic |
| GGGTAAATGTGTGGGCACGG+TGG | 0.700892 | 7.1:+20975753 | MS.gene024286:CDS |
| TTGGCTTTATTAGGGCTAAG+CGG | 0.719008 | 7.1:+20978477 | MS.gene024286:CDS |
| GATGGAATCTGGTTGTGACG+AGG | 0.743372 | 7.1:+20976318 | MS.gene024286:CDS |
| TAGCCCTAATAAAGCCAAGG+CGG | 0.755354 | 7.1:-20978472 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTCAACATTATAAAAT+AGG | - | chr7.1:20978308-20978327 | None:intergenic | 10.0% |
| !!! | TTAACTTTTTTATTTTCATT+TGG | + | chr7.1:20975901-20975920 | MS.gene024286:intron | 10.0% |
| !! | TAATAAATCAAAGTGATTAA+CGG | - | chr7.1:20975686-20975705 | None:intergenic | 15.0% |
| !!! | AACAAATTATTTTCACATTT+AGG | + | chr7.1:20976834-20976853 | MS.gene024286:intron | 15.0% |
| !!! | AATGATTTTTTTTGCAAAAT+GGG | - | chr7.1:20977695-20977714 | None:intergenic | 15.0% |
| !!! | TAAATTGTGTTTAGATTTTT+TGG | + | chr7.1:20978342-20978361 | MS.gene024286:intron | 15.0% |
| !!! | TTATTTTCATTTGGTATAAT+GGG | + | chr7.1:20975910-20975929 | MS.gene024286:intron | 15.0% |
| !!! | TTTATTTTCATTTGGTATAA+TGG | + | chr7.1:20975909-20975928 | MS.gene024286:intron | 15.0% |
| !!! | TTTTTTTATACTTATTAGCT+GGG | + | chr7.1:20976874-20976893 | MS.gene024286:intron | 15.0% |
| !!! | TTTTTTTTATACTTATTAGC+TGG | + | chr7.1:20976873-20976892 | MS.gene024286:intron | 15.0% |
| !! | AAAAGAACTTATACTTACAT+AGG | + | chr7.1:20976113-20976132 | MS.gene024286:intron | 20.0% |
| !! | AAATATTATAGTCTCACATT+TGG | - | chr7.1:20977224-20977243 | None:intergenic | 20.0% |
| !! | ACAATTAAAGTTCAAATGTT+TGG | + | chr7.1:20977811-20977830 | MS.gene024286:intron | 20.0% |
| !! | CAATTAAAGTTCAAATGTTT+GGG | + | chr7.1:20977812-20977831 | MS.gene024286:intron | 20.0% |
| !! | GAAAATGTTATTAAGATAAG+TGG | - | chr7.1:20977313-20977332 | None:intergenic | 20.0% |
| !! | TCAAACAACACTATAATATT+TGG | + | chr7.1:20976724-20976743 | MS.gene024286:intron | 20.0% |
| !! | TTGAATATTTACTAGACATA+TGG | + | chr7.1:20978319-20978338 | MS.gene024286:intron | 20.0% |
| !!! | AGTGTAATTTTTCATTGAAA+AGG | - | chr7.1:20977423-20977442 | None:intergenic | 20.0% |
| !!! | CAATGATTTTTTTTGCAAAA+TGG | - | chr7.1:20977696-20977715 | None:intergenic | 20.0% |
| !!! | CATAACAAGTTTAAAATCAA+CGG | - | chr7.1:20978108-20978127 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATACAAACA+AGG | + | chr7.1:20976173-20976192 | MS.gene024286:intron | 20.0% |
| !!! | TTCTTTCTTTGTTTTGTTTT+AGG | + | chr7.1:20975720-20975739 | MS.gene024286:intron | 20.0% |
| !!! | TTTTGCAAAAAAAATCATTG+CGG | + | chr7.1:20977696-20977715 | MS.gene024286:intron | 20.0% |
| !!! | TTTTTTATACTTATTAGCTG+GGG | + | chr7.1:20976875-20976894 | MS.gene024286:intron | 20.0% |
| ! | AAAAAACAAGCAAAAGCTAA+AGG | - | chr7.1:20976257-20976276 | None:intergenic | 25.0% |
| ! | AAATACTTCAATTATGTTGG+TGG | + | chr7.1:20978271-20978290 | MS.gene024286:intron | 25.0% |
| ! | AAATAGTCTATTATTAGACG+CGG | - | chr7.1:20977064-20977083 | None:intergenic | 25.0% |
| ! | AAATGACCCAGATAATAAAA+AGG | - | chr7.1:20975654-20975673 | None:intergenic | 25.0% |
| ! | AAATTCACAAATCACATGAT+CGG | - | chr7.1:20978157-20978176 | None:intergenic | 25.0% |
| ! | AAGGATAATCAAATAGTTAG+AGG | - | chr7.1:20977134-20977153 | None:intergenic | 25.0% |
| ! | AATCATAAGCGCTTATTTAT+AGG | + | chr7.1:20976379-20976398 | MS.gene024286:intron | 25.0% |
| ! | ACAATTGAAGTTCAAATGTT+TGG | + | chr7.1:20977778-20977797 | MS.gene024286:intron | 25.0% |
| ! | ATCATAAGCGCTTATTTATA+GGG | + | chr7.1:20976380-20976399 | MS.gene024286:intron | 25.0% |
| ! | ATGTTGTATAGATTGTATAC+AGG | - | chr7.1:20977380-20977399 | None:intergenic | 25.0% |
| ! | GAGGAAATAAAAGTTTAAGA+CGG | - | chr7.1:20978538-20978557 | None:intergenic | 25.0% |
| ! | GTTCAAAGTTAAACACTTAT+AGG | + | chr7.1:20978370-20978389 | MS.gene024286:intron | 25.0% |
| ! | TAGCACTTAAATAAGGTAAA+CGG | - | chr7.1:20976623-20976642 | None:intergenic | 25.0% |
| ! | TATACATTAACAGGTTACAT+TGG | + | chr7.1:20978409-20978428 | MS.gene024286:intron | 25.0% |
| ! | TGTTGTATAGATTGTATACA+GGG | - | chr7.1:20977379-20977398 | None:intergenic | 25.0% |
| ! | TTCATCATTGTTCAACTTAT+TGG | + | chr7.1:20978240-20978259 | MS.gene024286:intron | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | - | chr7.1:20976013-20976032 | None:intergenic | 25.0% |
| !! | CTTCTTGTTTATACATTAAC+AGG | + | chr7.1:20978400-20978419 | MS.gene024286:intron | 25.0% |
| !! | TTTTCGCCTTTTTATTATCT+GGG | + | chr7.1:20975645-20975664 | MS.gene024286:intron | 25.0% |
| !!! | CTTTTTCACTACTATTTGAA+TGG | + | chr7.1:20978500-20978519 | MS.gene024286:CDS | 25.0% |
| !!! | TTGTTTTAGGCTTTTCATAA+GGG | + | chr7.1:20975733-20975752 | MS.gene024286:intron | 25.0% |
| !!! | TTTGTTTTAGGCTTTTCATA+AGG | + | chr7.1:20975732-20975751 | MS.gene024286:intron | 25.0% |
| AAAAATGCTTGTGTAAACTC+GGG | + | chr7.1:20977906-20977925 | MS.gene024286:intron | 30.0% | |
| AACAAAGATAGATAAGACGA+AGG | - | chr7.1:20977160-20977179 | None:intergenic | 30.0% | |
| AACTCCTTATAATCACGTAT+AGG | - | chr7.1:20976199-20976218 | None:intergenic | 30.0% | |
| AGACTGTCTATTAAAGCTTA+TGG | + | chr7.1:20975969-20975988 | MS.gene024286:intron | 30.0% | |
| AGTCATCGTATGAAAACATA+GGG | - | chr7.1:20977869-20977888 | None:intergenic | 30.0% | |
| ATAGATAAGACGAAGGAATA+AGG | - | chr7.1:20977153-20977172 | None:intergenic | 30.0% | |
| ATTTCTGTTTCGTCTTTGTT+GGG | - | chr7.1:20975445-20975464 | None:intergenic | 30.0% | |
| CAAAAATGCTTGTGTAAACT+CGG | + | chr7.1:20977905-20977924 | MS.gene024286:intron | 30.0% | |
| CAAAACTACTACAGATTGAA+GGG | - | chr7.1:20978062-20978081 | None:intergenic | 30.0% | |
| CCTATCAAACAAAATAACAG+GGG | - | chr7.1:20977503-20977522 | None:intergenic | 30.0% | |
| GCCTATCAAACAAAATAACA+GGG | - | chr7.1:20977504-20977523 | None:intergenic | 30.0% | |
| GCGAAATACTTCAATTATGT+TGG | + | chr7.1:20978268-20978287 | MS.gene024286:intron | 30.0% | |
| TACTACATCTCTTAGTAAAC+TGG | + | chr7.1:20977591-20977610 | MS.gene024286:intron | 30.0% | |
| TCAAAACTACTACAGATTGA+AGG | - | chr7.1:20978063-20978082 | None:intergenic | 30.0% | |
| TGCCTATCAAACAAAATAAC+AGG | - | chr7.1:20977505-20977524 | None:intergenic | 30.0% | |
| TGTCTATTAAAGCTTATGGA+AGG | + | chr7.1:20975973-20975992 | MS.gene024286:intron | 30.0% | |
| TTAAATTGTATGTTTCCCCT+AGG | + | chr7.1:20976899-20976918 | MS.gene024286:intron | 30.0% | |
| TTTATTCGTACAAACTGACA+TGG | - | chr7.1:20976658-20976677 | None:intergenic | 30.0% | |
| TTTCATAAGGGTAAATGTGT+GGG | + | chr7.1:20975745-20975764 | MS.gene024286:CDS | 30.0% | |
| ! | AAACCAAAGTGAAACTCTTT+TGG | - | chr7.1:20977751-20977770 | None:intergenic | 30.0% |
| ! | CTTTTCGCCTTTTTATTATC+TGG | + | chr7.1:20975644-20975663 | MS.gene024286:intron | 30.0% |
| ! | GTCTTATCTATCTTTGTTGT+TGG | + | chr7.1:20977162-20977181 | MS.gene024286:intron | 30.0% |
| ! | TCTATTACAAGTTGACTTTC+CGG | + | chr7.1:20977339-20977358 | MS.gene024286:intron | 30.0% |
| ! | TCTGACTAGTACAAACTTTT+TGG | - | chr7.1:20976506-20976525 | None:intergenic | 30.0% |
| ! | TTTTCATAAGGGTAAATGTG+TGG | + | chr7.1:20975744-20975763 | MS.gene024286:CDS | 30.0% |
| !! | TATTTTGTTTGATAGGCACA+AGG | + | chr7.1:20977507-20977526 | MS.gene024286:intron | 30.0% |
| !! | TTACACTTAAAGCATTGTTC+CGG | + | chr7.1:20977436-20977455 | MS.gene024286:intron | 30.0% |
| !! | TTTGGTATAATGGGTATGTT+TGG | + | chr7.1:20975919-20975938 | MS.gene024286:intron | 30.0% |
| !!! | AAAGCTTTTAGTTTTGGTGT+TGG | + | chr7.1:20976590-20976609 | MS.gene024286:intron | 30.0% |
| !!! | GTAGAGAAAGCTTTTAGTTT+TGG | + | chr7.1:20976584-20976603 | MS.gene024286:intron | 30.0% |
| AAAATCATTGCGGAACCAAT+TGG | + | chr7.1:20977706-20977725 | MS.gene024286:intron | 35.0% | |
| AAATAGTTAGAGGTAGAGAG+AGG | - | chr7.1:20977124-20977143 | None:intergenic | 35.0% | |
| AAGGCCTATACGTGATTATA+AGG | + | chr7.1:20976192-20976211 | MS.gene024286:intron | 35.0% | |
| AATAAAGAGTGATGCAAACC+AGG | - | chr7.1:20977480-20977499 | None:intergenic | 35.0% | |
| ACATTGCATATAACCTTGAG+TGG | + | chr7.1:20977396-20977415 | MS.gene024286:intron | 35.0% | |
| AGAGTCAACGAGATACTAAT+GGG | - | chr7.1:20977249-20977268 | None:intergenic | 35.0% | |
| AGGCGAAAAGATGAAAGATT+TGG | - | chr7.1:20975634-20975653 | None:intergenic | 35.0% | |
| ATCTTTGCAATGAACTCAAC+AGG | + | chr7.1:20977945-20977964 | MS.gene024286:intron | 35.0% | |
| ATGCATCAACTTATCAGAGT+TGG | - | chr7.1:20977989-20978008 | None:intergenic | 35.0% | |
| CAAACCAAAATCTCAGAAAC+GGG | + | chr7.1:20976922-20976941 | MS.gene024286:intron | 35.0% | |
| CAGTCATCGTATGAAAACAT+AGG | - | chr7.1:20977870-20977889 | None:intergenic | 35.0% | |
| CTTCCAAAAGAGTTTCACTT+TGG | + | chr7.1:20977745-20977764 | MS.gene024286:intron | 35.0% | |
| GAAGCAGAAGTCACAAATAA+AGG | + | chr7.1:20978431-20978450 | MS.gene024286:CDS | 35.0% | |
| GAGATTGAATACATCAGCTA+CGG | + | chr7.1:20975490-20975509 | MS.gene024286:CDS | 35.0% | |
| GATACAACTAGACATAGACA+TGG | - | chr7.1:20976541-20976560 | None:intergenic | 35.0% | |
| GATTATTGAGCAGATCCAAT+TGG | - | chr7.1:20977724-20977743 | None:intergenic | 35.0% | |
| GATTTCTGTTTCGTCTTTGT+TGG | - | chr7.1:20975446-20975465 | None:intergenic | 35.0% | |
| GCAAACCAAAATCTCAGAAA+CGG | + | chr7.1:20976921-20976940 | MS.gene024286:intron | 35.0% | |
| GTAGCTGATGTATTCAATCT+CGG | - | chr7.1:20975491-20975510 | None:intergenic | 35.0% | |
| TACAAACTGACATGGAACTA+TGG | - | chr7.1:20976650-20976669 | None:intergenic | 35.0% | |
| TACCATCACAACTCAATTGA+CGG | - | chr7.1:20978182-20978201 | None:intergenic | 35.0% | |
| TAGGTCTATCAAAGTGATGA+TGG | + | chr7.1:20976300-20976319 | MS.gene024286:CDS | 35.0% | |
| TGAAGCTAGATTAAGCTTTG+TGG | - | chr7.1:20978016-20978035 | None:intergenic | 35.0% | |
| TGAGTTGTGATGGTATGTTT+GGG | + | chr7.1:20978187-20978206 | MS.gene024286:intron | 35.0% | |
| TGCATCAACTTATCAGAGTT+GGG | - | chr7.1:20977988-20978007 | None:intergenic | 35.0% | |
| TGGAAGCTAGCACTTAAATA+AGG | - | chr7.1:20976630-20976649 | None:intergenic | 35.0% | |
| ! | TTGAGTTGTGATGGTATGTT+TGG | + | chr7.1:20978186-20978205 | MS.gene024286:intron | 35.0% |
| !! | ATCAAAGTGATGATGGAATC+TGG | + | chr7.1:20976307-20976326 | MS.gene024286:CDS | 35.0% |
| !! | TTTGTTGTTGGTGTTTCTGT+GGG | + | chr7.1:20977174-20977193 | MS.gene024286:intron | 35.0% |
| !!! | ACTGGCTTTTCATATAGTAC+TGG | + | chr7.1:20977609-20977628 | MS.gene024286:intron | 35.0% |
| !!! | ATTGAGAGTATTTTTCCACC+AGG | + | chr7.1:20976981-20977000 | MS.gene024286:intron | 35.0% |
| !!! | CCCCTGTTATTTTGTTTGAT+AGG | + | chr7.1:20977500-20977519 | MS.gene024286:intron | 35.0% |
| !!! | CTTTTAGTTTTGGTGTTGGT+TGG | + | chr7.1:20976594-20976613 | MS.gene024286:intron | 35.0% |
| ACTACAGATTGAAGGGTAGT+GGG | - | chr7.1:20978055-20978074 | None:intergenic | 40.0% | |
| AGACAAGATAGGATCAAGGA+CGG | - | chr7.1:20977283-20977302 | None:intergenic | 40.0% | |
| AGACCTACAGAGACAAACTT+TGG | - | chr7.1:20977667-20977686 | None:intergenic | 40.0% | |
| AGACCTAGTAACAAGTTCTG+TGG | - | chr7.1:20976287-20976306 | None:intergenic | 40.0% | |
| AGTTGTATCCCAATGTCATG+TGG | + | chr7.1:20976552-20976571 | MS.gene024286:intron | 40.0% | |
| ATACCTAGACCACATGACAT+TGG | - | chr7.1:20976564-20976583 | None:intergenic | 40.0% | |
| ATCGCTACTTCGTCTATCTA+TGG | + | chr7.1:20975587-20975606 | MS.gene024286:CDS | 40.0% | |
| ATGAACTCAACAGGTCAATG+AGG | + | chr7.1:20977954-20977973 | MS.gene024286:intron | 40.0% | |
| ATTGAATACATCAGCTACGG+CGG | + | chr7.1:20975493-20975512 | MS.gene024286:CDS | 40.0% | |
| CACAAGACAAGATAGGATCA+AGG | - | chr7.1:20977287-20977306 | None:intergenic | 40.0% | |
| CTAGACTCACCGGATAAATA+CGG | + | chr7.1:20978578-20978597 | MS.gene024286:CDS | 40.0% | |
| CTTCCAAAGTTTGTCTCTGT+AGG | + | chr7.1:20977661-20977680 | MS.gene024286:intron | 40.0% | |
| GAGAGTCAACGAGATACTAA+TGG | - | chr7.1:20977250-20977269 | None:intergenic | 40.0% | |
| GATTCATGCAGGTGATAAAC+CGG | - | chr7.1:20977458-20977477 | None:intergenic | 40.0% | |
| GGAACACTGCATGTTTGAAA+AGG | - | chr7.1:20977097-20977116 | None:intergenic | 40.0% | |
| GGTACCAGAAAAGAAAGATG+AGG | - | chr7.1:20975613-20975632 | None:intergenic | 40.0% | |
| GGTATGTTTGGGTACTAGTT+TGG | + | chr7.1:20978198-20978217 | MS.gene024286:intron | 40.0% | |
| GTACAAACTGACATTGAAGC+AGG | - | chr7.1:20976948-20976967 | None:intergenic | 40.0% | |
| GTTGTTATCAAACCCTACAG+AGG | + | chr7.1:20975829-20975848 | MS.gene024286:CDS | 40.0% | |
| TACCTAGACCACATGACATT+GGG | - | chr7.1:20976563-20976582 | None:intergenic | 40.0% | |
| TACTACAGATTGAAGGGTAG+TGG | - | chr7.1:20978056-20978075 | None:intergenic | 40.0% | |
| TAGACTCACCGGATAAATAC+GGG | + | chr7.1:20978579-20978598 | MS.gene024286:CDS | 40.0% | |
| TAGATAGACGAAGTAGCGAT+AGG | - | chr7.1:20975587-20975606 | None:intergenic | 40.0% | |
| TATTAGACGCGGTTCAAGAT+GGG | - | chr7.1:20977053-20977072 | None:intergenic | 40.0% | |
| TATTTATCCGGTGAGTCTAG+AGG | - | chr7.1:20978578-20978597 | None:intergenic | 40.0% | |
| TCATTGAAAAGGACCACTCA+AGG | - | chr7.1:20977412-20977431 | None:intergenic | 40.0% | |
| TTATTAGACGCGGTTCAAGA+TGG | - | chr7.1:20977054-20977073 | None:intergenic | 40.0% | |
| TTTATCACCTGCATGAATCC+TGG | + | chr7.1:20977459-20977478 | MS.gene024286:intron | 40.0% | |
| ! | AGCTTAATCTAGCTTCAACG+AGG | + | chr7.1:20978019-20978038 | MS.gene024286:intron | 40.0% |
| ! | ATGGCCTCATCTTTCTTTTC+TGG | + | chr7.1:20975606-20975625 | MS.gene024286:CDS | 40.0% |
| ! | CTTAATCTAGCTTCAACGAG+GGG | + | chr7.1:20978021-20978040 | MS.gene024286:intron | 40.0% |
| ! | GAACATCGTAGCACTTTTAG+AGG | + | chr7.1:20975790-20975809 | MS.gene024286:CDS | 40.0% |
| ! | GCTTAATCTAGCTTCAACGA+GGG | + | chr7.1:20978020-20978039 | MS.gene024286:intron | 40.0% |
| ! | GGTACTAGTTTGGTTTAGTC+TGG | + | chr7.1:20978208-20978227 | MS.gene024286:intron | 40.0% |
| !! | AGAGTATTTTTCCACCAGGT+GGG | + | chr7.1:20976688-20976707 | MS.gene024286:intron | 40.0% |
| !! | CTTTGTTGTTGGTGTTTCTG+TGG | + | chr7.1:20977173-20977192 | MS.gene024286:intron | 40.0% |
| !! | TTGGCTTTATTAGGGCTAAG+CGG | + | chr7.1:20978477-20978496 | MS.gene024286:CDS | 40.0% |
| !!! | AGTGAGAGTATTTTTCCACC+AGG | + | chr7.1:20976684-20976703 | MS.gene024286:intron | 40.0% |
| !!! | CTGAGATTTTGGTTTGCCTA+GGG | - | chr7.1:20976918-20976937 | None:intergenic | 40.0% |
| !!! | TCTGAGATTTTGGTTTGCCT+AGG | - | chr7.1:20976919-20976938 | None:intergenic | 40.0% |
| !!! | TGAGATTTTGGTTTGCCTAG+GGG | - | chr7.1:20976917-20976936 | None:intergenic | 40.0% |
| ATCAAACCCTACAGAGGAAG+AGG | + | chr7.1:20975835-20975854 | MS.gene024286:CDS | 45.0% | |
| ATCCCAATGTCATGTGGTCT+AGG | + | chr7.1:20976558-20976577 | MS.gene024286:intron | 45.0% | |
| ATCTCATAACTAACCCCACC+TGG | - | chr7.1:20976705-20976724 | None:intergenic | 45.0% | |
| ATGCAAACCAGGATTCATGC+AGG | - | chr7.1:20977469-20977488 | None:intergenic | 45.0% | |
| ATGTGGCTCCCGTATTTATC+CGG | - | chr7.1:20978590-20978609 | None:intergenic | 45.0% | |
| CAAGGTTCATGATGAGAGGT+AGG | - | chr7.1:20975528-20975547 | None:intergenic | 45.0% | |
| CGATAGGTGAAGATGGAGTA+AGG | - | chr7.1:20975571-20975590 | None:intergenic | 45.0% | |
| GAAGTAGCGATAGGTGAAGA+TGG | - | chr7.1:20975578-20975597 | None:intergenic | 45.0% | |
| GCTTAGCCCTAATAAAGCCA+AGG | - | chr7.1:20978478-20978497 | None:intergenic | 45.0% | |
| GTGGTCACACAAGACAAGAT+AGG | - | chr7.1:20977294-20977313 | None:intergenic | 45.0% | |
| TAAGGGTAAATGTGTGGGCA+CGG | + | chr7.1:20975750-20975769 | MS.gene024286:CDS | 45.0% | |
| TAGCCCTAATAAAGCCAAGG+CGG | - | chr7.1:20978475-20978494 | None:intergenic | 45.0% | |
| TCGACAAGGTTCATGATGAG+AGG | - | chr7.1:20975532-20975551 | None:intergenic | 45.0% | |
| TTAGAGGTAGAGAGAGGTCA+AGG | - | chr7.1:20977118-20977137 | None:intergenic | 45.0% | |
| ! | CACGGTGGTTTGTAAAATGG+GGG | + | chr7.1:20975768-20975787 | MS.gene024286:CDS | 45.0% |
| ! | GACCGTCAATTGAGTTGTGA+TGG | + | chr7.1:20978177-20978196 | MS.gene024286:intron | 45.0% |
| ! | GAGTATTTTTCCACCAGGTG+GGG | + | chr7.1:20976689-20976708 | MS.gene024286:intron | 45.0% |
| ! | GCACGGTGGTTTGTAAAATG+GGG | + | chr7.1:20975767-20975786 | MS.gene024286:CDS | 45.0% |
| ! | GGCACGGTGGTTTGTAAAAT+GGG | + | chr7.1:20975766-20975785 | MS.gene024286:CDS | 45.0% |
| ! | TACAAGTTGACTTTCCGGTC+AGG | + | chr7.1:20977344-20977363 | MS.gene024286:intron | 45.0% |
| !! | AAAGGAGCACTTGCTCTGTA+TGG | + | chr7.1:20978449-20978468 | MS.gene024286:CDS | 45.0% |
| !! | AGATTGAAGGGTAGTGGGAT+TGG | - | chr7.1:20978050-20978069 | None:intergenic | 45.0% |
| !! | CAGCCACAGAACTTGTTACT+AGG | + | chr7.1:20976281-20976300 | MS.gene024286:intron | 45.0% |
| !! | GATTGAAGGGTAGTGGGATT+GGG | - | chr7.1:20978049-20978068 | None:intergenic | 45.0% |
| !!! | GAGAGTATTTTTCCACCAGG+TGG | + | chr7.1:20976687-20976706 | MS.gene024286:intron | 45.0% |
| ACCAATGCCTCTTCCTCTGT+AGG | - | chr7.1:20975845-20975864 | None:intergenic | 50.0% | |
| AGCCACATGCATAGTGATCG+TGG | + | chr7.1:20978602-20978621 | MS.gene024286:CDS | 50.0% | |
| CCAATGCCTCTTCCTCTGTA+GGG | - | chr7.1:20975844-20975863 | None:intergenic | 50.0% | |
| GATGGAATCTGGTTGTGACG+AGG | + | chr7.1:20976318-20976337 | MS.gene024286:CDS | 50.0% | |
| TCATAACTAACCCCACCTGG+TGG | - | chr7.1:20976702-20976721 | None:intergenic | 50.0% | |
| ! | GGGCACGGTGGTTTGTAAAA+TGG | + | chr7.1:20975765-20975784 | MS.gene024286:CDS | 50.0% |
| !! | ATGGCCGCCTTGGCTTTATT+AGG | + | chr7.1:20978468-20978487 | MS.gene024286:CDS | 50.0% |
| !! | TGGCCGCCTTGGCTTTATTA+GGG | + | chr7.1:20978469-20978488 | MS.gene024286:CDS | 50.0% |
| !!! | CAGGCCCGTTTCTGAGATTT+TGG | - | chr7.1:20976929-20976948 | None:intergenic | 50.0% |
| CAGGGCAGAAAAAGCCTGAC+CGG | - | chr7.1:20977361-20977380 | None:intergenic | 55.0% | |
| CGCCACGATCACTATGCATG+TGG | - | chr7.1:20978607-20978626 | None:intergenic | 55.0% | |
| CGCTGAGTTCTTCGTCGACA+AGG | - | chr7.1:20975546-20975565 | None:intergenic | 55.0% | |
| ! | CCCTACAGAGGAAGAGGCAT+TGG | + | chr7.1:20975841-20975860 | MS.gene024286:CDS | 55.0% |
| ! | TCTAGAGGTGCGTGCAAGTC+TGG | - | chr7.1:20978563-20978582 | None:intergenic | 55.0% |
| CTTGCTCTGTATGGCCGCCT+TGG | + | chr7.1:20978458-20978477 | MS.gene024286:CDS | 60.0% | |
| GCACGCACCTCTAGACTCAC+CGG | + | chr7.1:20978568-20978587 | MS.gene024286:CDS | 60.0% | |
| GGGTAAATGTGTGGGCACGG+TGG | + | chr7.1:20975753-20975772 | MS.gene024286:CDS | 60.0% | |
| GGTGCGTGCAAGTCTGGACG+AGG | - | chr7.1:20978557-20978576 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 20975433 | 20978646 | 20975433 | ID=MS.gene024286 |
| chr7.1 | mRNA | 20975433 | 20978646 | 20975433 | ID=MS.gene024286.t1;Parent=MS.gene024286 |
| chr7.1 | exon | 20975433 | 20975627 | 20975433 | ID=MS.gene024286.t1.exon1;Parent=MS.gene024286.t1 |
| chr7.1 | CDS | 20975433 | 20975627 | 20975433 | ID=cds.MS.gene024286.t1;Parent=MS.gene024286.t1 |
| chr7.1 | exon | 20975742 | 20975862 | 20975742 | ID=MS.gene024286.t1.exon2;Parent=MS.gene024286.t1 |
| chr7.1 | CDS | 20975742 | 20975862 | 20975742 | ID=cds.MS.gene024286.t1;Parent=MS.gene024286.t1 |
| chr7.1 | exon | 20976284 | 20976339 | 20976284 | ID=MS.gene024286.t1.exon3;Parent=MS.gene024286.t1 |
| chr7.1 | CDS | 20976284 | 20976339 | 20976284 | ID=cds.MS.gene024286.t1;Parent=MS.gene024286.t1 |
| chr7.1 | exon | 20978422 | 20978646 | 20978422 | ID=MS.gene024286.t1.exon4;Parent=MS.gene024286.t1 |
| chr7.1 | CDS | 20978422 | 20978646 | 20978422 | ID=cds.MS.gene024286.t1;Parent=MS.gene024286.t1 |
| Gene Sequence |
| Protein sequence |
