Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024382.t1 | XP_003626618.2 | 92.3 | 744 | 46 | 2 | 74 | 806 | 11 | 754 | 0.00E+00 | 1310 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024382.t1 | Q6R0H1 | 40.2 | 751 | 304 | 23 | 79 | 805 | 15 | 644 | 2.4e-102 | 374.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024382.t1 | G7L558 | 92.3 | 744 | 46 | 2 | 74 | 806 | 11 | 754 | 0.0e+00 | 1310.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene024382.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024382.t1 | MTR_7g118330 | 96.909 | 744 | 12 | 2 | 74 | 806 | 11 | 754 | 0.0 | 1494 |
MS.gene024382.t1 | MTR_3g064500 | 64.815 | 108 | 33 | 3 | 72 | 176 | 40 | 145 | 2.65e-30 | 123 |
MS.gene024382.t1 | MTR_5g076960 | 72.043 | 93 | 24 | 1 | 79 | 171 | 34 | 124 | 8.94e-30 | 123 |
MS.gene024382.t1 | MTR_1g067000 | 51.961 | 102 | 37 | 2 | 78 | 177 | 37 | 128 | 4.44e-29 | 118 |
MS.gene024382.t1 | MTR_8g028655 | 53.000 | 100 | 37 | 1 | 79 | 178 | 55 | 144 | 1.01e-28 | 118 |
MS.gene024382.t1 | MTR_0123s0070 | 45.385 | 130 | 53 | 3 | 58 | 179 | 12 | 131 | 1.38e-28 | 116 |
MS.gene024382.t1 | MTR_6g477860 | 71.579 | 95 | 25 | 1 | 78 | 172 | 47 | 139 | 1.49e-28 | 120 |
MS.gene024382.t1 | MTR_0123s0070 | 45.385 | 130 | 53 | 3 | 58 | 179 | 12 | 131 | 1.55e-28 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024382.t1 | AT1G01060 | 44.297 | 754 | 268 | 23 | 79 | 805 | 15 | 643 | 1.53e-121 | 380 |
MS.gene024382.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 79 | 805 | 15 | 644 | 2.44e-121 | 380 |
MS.gene024382.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 79 | 805 | 15 | 644 | 2.44e-121 | 380 |
MS.gene024382.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 79 | 805 | 15 | 644 | 2.44e-121 | 380 |
MS.gene024382.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 79 | 805 | 15 | 644 | 2.44e-121 | 380 |
MS.gene024382.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 79 | 805 | 15 | 644 | 2.44e-121 | 380 |
MS.gene024382.t1 | AT2G46830 | 37.683 | 751 | 289 | 30 | 74 | 801 | 9 | 603 | 1.75e-81 | 273 |
MS.gene024382.t1 | AT1G01060 | 40.113 | 708 | 271 | 24 | 126 | 805 | 60 | 642 | 4.34e-77 | 262 |
MS.gene024382.t1 | AT1G01060 | 40.113 | 708 | 271 | 24 | 126 | 805 | 60 | 642 | 4.34e-77 | 262 |
MS.gene024382.t1 | AT2G46830 | 39.609 | 409 | 179 | 18 | 412 | 801 | 162 | 521 | 3.02e-44 | 168 |
MS.gene024382.t1 | AT2G46830 | 39.609 | 409 | 179 | 18 | 412 | 801 | 162 | 521 | 3.02e-44 | 168 |
MS.gene024382.t1 | AT5G17300 | 68.932 | 103 | 29 | 2 | 70 | 171 | 36 | 136 | 5.86e-32 | 129 |
MS.gene024382.t1 | AT5G37260 | 68.041 | 97 | 25 | 1 | 75 | 171 | 23 | 113 | 1.06e-31 | 125 |
MS.gene024382.t1 | AT1G18330 | 56.489 | 131 | 50 | 2 | 74 | 199 | 36 | 164 | 2.20e-31 | 126 |
MS.gene024382.t1 | AT3G10113 | 56.489 | 131 | 50 | 2 | 74 | 199 | 51 | 179 | 3.15e-31 | 125 |
MS.gene024382.t1 | AT1G18330 | 56.489 | 131 | 50 | 2 | 74 | 199 | 62 | 190 | 5.45e-31 | 125 |
MS.gene024382.t1 | AT3G09600 | 49.091 | 110 | 44 | 2 | 62 | 171 | 19 | 116 | 6.48e-29 | 118 |
MS.gene024382.t1 | AT3G09600 | 49.091 | 110 | 44 | 2 | 62 | 171 | 19 | 116 | 6.48e-29 | 118 |
MS.gene024382.t1 | AT3G09600 | 49.091 | 110 | 44 | 2 | 62 | 171 | 19 | 116 | 6.94e-29 | 117 |
MS.gene024382.t1 | AT3G09600 | 49.091 | 110 | 44 | 2 | 62 | 171 | 19 | 116 | 6.94e-29 | 117 |
MS.gene024382.t1 | AT3G09600 | 53.191 | 94 | 34 | 1 | 78 | 171 | 33 | 116 | 7.54e-29 | 117 |
MS.gene024382.t1 | AT5G52660 | 55.789 | 95 | 32 | 2 | 79 | 173 | 63 | 147 | 1.37e-27 | 115 |
MS.gene024382.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 78 | 171 | 38 | 121 | 1.37e-27 | 113 |
MS.gene024382.t1 | AT5G52660 | 55.789 | 95 | 32 | 2 | 79 | 173 | 63 | 147 | 1.41e-27 | 115 |
MS.gene024382.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 78 | 171 | 38 | 121 | 1.62e-27 | 114 |
MS.gene024382.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 78 | 171 | 38 | 121 | 1.62e-27 | 114 |
MS.gene024382.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 78 | 171 | 38 | 121 | 1.79e-27 | 113 |
MS.gene024382.t1 | AT4G01280 | 54.206 | 107 | 37 | 3 | 79 | 183 | 50 | 146 | 2.16e-27 | 113 |
MS.gene024382.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 78 | 171 | 38 | 121 | 2.23e-27 | 113 |
MS.gene024382.t1 | AT4G01280 | 54.206 | 107 | 37 | 3 | 79 | 183 | 50 | 146 | 2.34e-27 | 113 |
MS.gene024382.t1 | AT1G01520 | 33.790 | 219 | 98 | 7 | 37 | 231 | 22 | 217 | 1.27e-26 | 110 |
MS.gene024382.t1 | AT1G01520 | 33.790 | 219 | 98 | 7 | 37 | 231 | 22 | 217 | 1.27e-26 | 110 |
MS.gene024382.t1 | AT1G01520 | 33.790 | 219 | 98 | 7 | 37 | 231 | 22 | 217 | 1.31e-26 | 110 |
MS.gene024382.t1 | AT1G01520 | 33.790 | 219 | 98 | 7 | 37 | 231 | 22 | 217 | 1.46e-26 | 110 |
MS.gene024382.t1 | AT3G09600 | 45.455 | 66 | 26 | 1 | 106 | 171 | 5 | 60 | 1.33e-13 | 72.0 |
MS.gene024382.t1 | AT3G09600 | 45.455 | 66 | 26 | 1 | 106 | 171 | 5 | 60 | 1.33e-13 | 72.0 |
MS.gene024382.t1 | AT3G09600 | 45.455 | 66 | 26 | 1 | 106 | 171 | 5 | 60 | 1.40e-13 | 71.2 |
MS.gene024382.t1 | AT3G09600 | 45.455 | 66 | 26 | 1 | 106 | 171 | 5 | 60 | 1.40e-13 | 71.2 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAGGGACGACTTGCCTTTC+GGG | 0.205941 | 7.2:-309775 | MS.gene024382:intron |
TTCTCGGATTGAACCGATTT+CGG | 0.267063 | 7.2:+310962 | None:intergenic |
GCTTTGCAAGCTCAACATTC+AGG | 0.271530 | 7.2:-310215 | MS.gene024382:CDS |
TTAGCAACCTTCTTGATTCT+TGG | 0.278037 | 7.2:-309896 | MS.gene024382:CDS |
CATTCCGCCCCTGCTTTCCT+TGG | 0.281657 | 7.2:+309500 | None:intergenic |
TACAGGGACGACTTGCCTTT+CGG | 0.283902 | 7.2:-309776 | MS.gene024382:intron |
GGTTTCCCATCTAGACAAAT+TGG | 0.286499 | 7.2:-310482 | MS.gene024382:CDS |
CCCTTCCAGGCGTATCCTCT+TGG | 0.318732 | 7.2:+309449 | None:intergenic |
CAAAGACTGCTGTGCAAATC+AGG | 0.320713 | 7.2:-318405 | MS.gene024382:CDS |
ATATCTCCTTGATCTGTCTT+AGG | 0.340962 | 7.2:+310293 | None:intergenic |
GGTGAACCAATTTGTCTAGA+TGG | 0.346189 | 7.2:+310476 | None:intergenic |
CATCATCTATCTTCAACATC+TGG | 0.356720 | 7.2:+311044 | None:intergenic |
TGCCGAAGATACAGATGAAC+AGG | 0.360829 | 7.2:+311198 | None:intergenic |
ATGAGGAGGTGAAAAGCTTT+GGG | 0.361595 | 7.2:+309728 | None:intergenic |
CTTGCTGCAGCATGGGCTGC+AGG | 0.364555 | 7.2:+310575 | None:intergenic |
GAACCCTGATTCCAACAAAA+TGG | 0.366904 | 7.2:-310081 | MS.gene024382:CDS |
CTAGAAGCCCTCAAGCTATA+TGG | 0.366925 | 7.2:-318539 | MS.gene024382:CDS |
TTGCTCCACTATGTAATGTT+GGG | 0.369916 | 7.2:+311477 | None:intergenic |
CAGTTACGACATATTTGTTA+TGG | 0.370458 | 7.2:-332169 | MS.gene024382:CDS |
TTACATAGTGGAGCAAAGTA+TGG | 0.371275 | 7.2:-311470 | MS.gene024382:CDS |
GAATCAGGGTTCTCAGAAAC+TGG | 0.380151 | 7.2:+310092 | None:intergenic |
GACAAATTCCTGCACCATAA+GGG | 0.382064 | 7.2:-311143 | MS.gene024382:CDS |
CATGAGGAGGTGAAAAGCTT+TGG | 0.391387 | 7.2:+309727 | None:intergenic |
CTTGTAAAAGGTGCTGCATT+AGG | 0.396536 | 7.2:-311584 | MS.gene024382:CDS |
CTTCTATATCGACGACTACT+AGG | 0.397927 | 7.2:+309921 | None:intergenic |
GGATTTCTAACCATGGGTCT+TGG | 0.398079 | 7.2:-309585 | MS.gene024382:CDS |
AAACTTAAGACTCGTCGAAC+AGG | 0.401478 | 7.2:-309555 | MS.gene024382:CDS |
GTGTCTGTTCAATTAGCAAA+TGG | 0.405485 | 7.2:-332147 | MS.gene024382:CDS |
TGGTGCTGTGGACTTCGTTT+TGG | 0.406608 | 7.2:-319095 | MS.gene024382:intron |
CACGTTGTTGATGGGAACTT+TGG | 0.409244 | 7.2:-310863 | MS.gene024382:CDS |
ACATTGGTCTTGCGAGGATA+AGG | 0.411349 | 7.2:+311506 | None:intergenic |
GATTCTCCTGCTTGCTCTCA+AGG | 0.412243 | 7.2:-310506 | MS.gene024382:CDS |
AGAACAATTCTCCAACTTAG+AGG | 0.412800 | 7.2:+310985 | None:intergenic |
TCCCATGGCCTCTGAGTTTG+TGG | 0.413076 | 7.2:-319628 | MS.gene024382:CDS |
GCTGGATTTGCGAAGAGATT+AGG | 0.415370 | 7.2:+310761 | None:intergenic |
CCTTCCAGGCGTATCCTCTT+GGG | 0.419975 | 7.2:+309450 | None:intergenic |
GAGAAGGAAGCACTTGTAAA+AGG | 0.422043 | 7.2:-311596 | MS.gene024382:CDS |
CGAGCATGGCAGCGTATAGA+AGG | 0.422755 | 7.2:-318515 | MS.gene024382:intron |
GGAGAATTGTTCTCCGAAAT+CGG | 0.424106 | 7.2:-310975 | MS.gene024382:CDS |
AGACAAATTCCTGCACCATA+AGG | 0.431378 | 7.2:-311144 | MS.gene024382:CDS |
TCACTTGTGTTTGATGCAGC+TGG | 0.433165 | 7.2:+310743 | None:intergenic |
AGCAAAACTTGCTGCAGCAT+GGG | 0.435145 | 7.2:+310568 | None:intergenic |
GCTTTGGGGCAACACCTCTC+TGG | 0.439351 | 7.2:+309743 | None:intergenic |
AAATGCATTTCTTGCTCTCA+AGG | 0.445522 | 7.2:+309664 | None:intergenic |
TAGTAGAGGCCAAGGAAAGC+AGG | 0.446953 | 7.2:-309509 | MS.gene024382:CDS |
ACTGCATGGTGGGCAGCTCA+TGG | 0.449952 | 7.2:-310410 | MS.gene024382:CDS |
ATCACTGTGCACGTTGTTGA+TGG | 0.454210 | 7.2:-310872 | MS.gene024382:CDS |
TGTTTACTAATATTTGTTGA+TGG | 0.455780 | 7.2:+310320 | None:intergenic |
GAGGACAGGCAAAAGCTGTC+TGG | 0.462645 | 7.2:+310363 | None:intergenic |
ACAAATTCCTGCACCATAAG+GGG | 0.465629 | 7.2:-311142 | MS.gene024382:CDS |
GTTTATATCAAGATTAATAG+TGG | 0.465812 | 7.2:+310118 | None:intergenic |
CTTGCTCATGCAGAACATAT+AGG | 0.466013 | 7.2:-318430 | MS.gene024382:intron |
CAAGGAAAGCAGGGGCGGAA+TGG | 0.468012 | 7.2:-309499 | MS.gene024382:CDS |
ACCCTGTTCATCTGTATCTT+CGG | 0.470243 | 7.2:-311200 | MS.gene024382:CDS |
TGCTCGGCCATATAGCTTGA+GGG | 0.477143 | 7.2:+318532 | None:intergenic |
CCAACGCTTCTTTGCTTACG+TGG | 0.480772 | 7.2:+319693 | None:intergenic |
TTGCGAGGATAAGGATTGCT+TGG | 0.483780 | 7.2:+311515 | None:intergenic |
GACTCTACATTTCAGCCAAT+AGG | 0.484471 | 7.2:-310800 | MS.gene024382:CDS |
TTTGCTCCACTATGTAATGT+TGG | 0.491563 | 7.2:+311476 | None:intergenic |
AGCTGCTGCAACTGCATGGT+GGG | 0.492943 | 7.2:-310420 | MS.gene024382:CDS |
CAACCACCTAAGACAGATCA+AGG | 0.494885 | 7.2:-310299 | MS.gene024382:CDS |
CAAGAGGATACGCCTGGAAG+GGG | 0.496539 | 7.2:-309448 | MS.gene024382:CDS |
GTAGCTAAATGATCCGCATC+AGG | 0.496824 | 7.2:+309948 | None:intergenic |
TCAGCATGGTTATGTGCAAA+TGG | 0.496955 | 7.2:+310665 | None:intergenic |
GTTCTTCCTTAAAGCATGAC+AGG | 0.503212 | 7.2:-332192 | None:intergenic |
TGGGACCCGTCTCTTCAACT+TGG | 0.503574 | 7.2:+309469 | None:intergenic |
CCAAGAGGATACGCCTGGAA+GGG | 0.504041 | 7.2:-309449 | MS.gene024382:CDS |
AGTTGTTGATGCAGGAGGAC+AGG | 0.504260 | 7.2:+310349 | None:intergenic |
GTTATTACCTCTTTCACTGA+AGG | 0.506309 | 7.2:+311112 | None:intergenic |
CTTCTATACGCTGCCATGCT+CGG | 0.509729 | 7.2:+318516 | None:intergenic |
GGGTCCCAAGAGGATACGCC+TGG | 0.511211 | 7.2:-309454 | MS.gene024382:CDS |
CAGGGTTCTCAGAAACTGGT+TGG | 0.511462 | 7.2:+310096 | None:intergenic |
ATCGAGTACTTACATTAGAA+AGG | 0.511686 | 7.2:-320405 | MS.gene024382:intron |
GTTTACACCTTCAGTGAAAG+AGG | 0.512851 | 7.2:-311119 | MS.gene024382:CDS |
CCTTCTTGATTCTTGGAAGG+AGG | 0.514276 | 7.2:-309889 | MS.gene024382:CDS |
CATTTGTCGAACCTCTAAGT+TGG | 0.515112 | 7.2:-310996 | MS.gene024382:CDS |
CAACCTTCTTGATTCTTGGA+AGG | 0.517741 | 7.2:-309892 | MS.gene024382:CDS |
TGTAGAAGACATGTTGAGAA+AGG | 0.517978 | 7.2:+310634 | None:intergenic |
TTGCTGCAGCATGGGCTGCA+GGG | 0.518760 | 7.2:+310576 | None:intergenic |
TCCTCATGATTTGATAAATG+AGG | 0.519074 | 7.2:-309712 | MS.gene024382:CDS |
ACCCACAAACTCAGAGGCCA+TGG | 0.520747 | 7.2:+319626 | None:intergenic |
ATGCTCGGCCATATAGCTTG+AGG | 0.521384 | 7.2:+318531 | None:intergenic |
CCCAAGAGGATACGCCTGGA+AGG | 0.522353 | 7.2:-309450 | MS.gene024382:CDS |
ACGTGCACAGTGATATGTCT+TGG | 0.523923 | 7.2:+310881 | None:intergenic |
GTGAACCAATTTGTCTAGAT+GGG | 0.530035 | 7.2:+310477 | None:intergenic |
CAGCAAAACTTGCTGCAGCA+TGG | 0.533463 | 7.2:+310567 | None:intergenic |
CGTGCACAGTGATATGTCTT+GGG | 0.533974 | 7.2:+310882 | None:intergenic |
CACGTAAGCAAAGAAGCGTT+GGG | 0.536926 | 7.2:-319692 | MS.gene024382:CDS |
CCACGTAAGCAAAGAAGCGT+TGG | 0.538486 | 7.2:-319693 | MS.gene024382:CDS |
AAAAGTATTAACAGTCCTCA+AGG | 0.540476 | 7.2:-311227 | MS.gene024382:CDS |
GCTTCTTTGCTTACGTGGCG+TGG | 0.542003 | 7.2:+319698 | None:intergenic |
TCTCCTTGATCTGTCTTAGG+TGG | 0.542096 | 7.2:+310296 | None:intergenic |
GATTCAGATGAAGAAACAGC+TGG | 0.543112 | 7.2:+310182 | None:intergenic |
CTGATAGACCGGTCTTCTTG+TGG | 0.544065 | 7.2:-310047 | MS.gene024382:CDS |
TGAGAAAGAATCACTTCTAG+AGG | 0.549009 | 7.2:-311396 | MS.gene024382:intron |
CAGTAGCTGCTGCAACTGCA+TGG | 0.549463 | 7.2:-310424 | MS.gene024382:CDS |
GAAGATTCTACATTTGCATA+CGG | 0.549998 | 7.2:+310533 | None:intergenic |
TTCACAGCTAGAGGTTGTGT+TGG | 0.551194 | 7.2:+310022 | None:intergenic |
AGAGGATACGCCTGGAAGGG+GGG | 0.551215 | 7.2:-309446 | MS.gene024382:CDS |
AGAGAAGGATGAGAAAGAAA+AGG | 0.551265 | 7.2:-309985 | MS.gene024382:CDS |
CTAACCATGGGTCTTGGACA+AGG | 0.551976 | 7.2:-309579 | MS.gene024382:CDS |
AAGAGGATACGCCTGGAAGG+GGG | 0.554626 | 7.2:-309447 | MS.gene024382:CDS |
TTCACACGGTAAACAAGCAA+TGG | 0.555075 | 7.2:-311423 | MS.gene024382:CDS |
TGTCTGTTCAATTAGCAAAT+GGG | 0.558260 | 7.2:-332146 | MS.gene024382:CDS |
CAGATGTTGAAGATAGATGA+TGG | 0.559885 | 7.2:-311043 | MS.gene024382:CDS |
AGTAGAGGCCAAGGAAAGCA+GGG | 0.563052 | 7.2:-309508 | MS.gene024382:CDS |
TTGGGTCCACAATTGACAGC+TGG | 0.564573 | 7.2:-319674 | MS.gene024382:CDS |
TATCCTCGCAAGACCAATGT+TGG | 0.566159 | 7.2:-311503 | MS.gene024382:CDS |
TGTTTCTTCATCTGAATCAG+AGG | 0.567469 | 7.2:-310177 | MS.gene024382:CDS |
AAGATGTTTAGTAGAGGCCA+AGG | 0.570129 | 7.2:-309517 | MS.gene024382:CDS |
TAATGTTGGGGTACCAACAT+TGG | 0.570681 | 7.2:+311490 | None:intergenic |
TCTACATTTCAGCCAATAGG+AGG | 0.570815 | 7.2:-310797 | MS.gene024382:CDS |
TGCAACCAAGTTGAAGAGAC+GGG | 0.572457 | 7.2:-309474 | MS.gene024382:CDS |
TTTACCTTGTCCAAGACCCA+TGG | 0.574964 | 7.2:+309575 | None:intergenic |
AGTAACTGATCTTGCAGAGG+AGG | 0.576051 | 7.2:+310257 | None:intergenic |
TGTTGGAACCACAAGAAGAC+CGG | 0.580340 | 7.2:+310039 | None:intergenic |
TAAGTTAAATACTTCATCAA+AGG | 0.580402 | 7.2:-310141 | MS.gene024382:CDS |
AGGAGCATAAAGATGAGGAA+AGG | 0.584458 | 7.2:-311288 | MS.gene024382:CDS |
ATCAGTCTCTTCACAGCTAG+AGG | 0.585395 | 7.2:+310013 | None:intergenic |
AAGACATGTTGAGAAAGGAT+TGG | 0.586137 | 7.2:+310639 | None:intergenic |
TCAAGCTATATGGCCGAGCA+TGG | 0.586429 | 7.2:-318529 | MS.gene024382:CDS |
CAGGCAAAAGCTGTCTGGAG+TGG | 0.586706 | 7.2:+310368 | None:intergenic |
TACATTTCAGCCAATAGGAG+GGG | 0.587380 | 7.2:-310795 | MS.gene024382:CDS |
GTACAAAATAACAATGAGGA+GGG | 0.588065 | 7.2:-309606 | MS.gene024382:CDS |
GAAAGGATTGGTAATCAGCA+TGG | 0.589647 | 7.2:+310651 | None:intergenic |
TTGCAACCAAGTTGAAGAGA+CGG | 0.591475 | 7.2:-309475 | MS.gene024382:CDS |
GGCTGCAGGGTGTTGCAGCA+AGG | 0.592386 | 7.2:+310589 | None:intergenic |
AAACCTCCTTGAGAGCAAGC+AGG | 0.592869 | 7.2:+310500 | None:intergenic |
TCACTGTGCACGTTGTTGAT+GGG | 0.593058 | 7.2:-310871 | MS.gene024382:CDS |
TGCTCCACTATGTAATGTTG+GGG | 0.594962 | 7.2:+311478 | None:intergenic |
CCCATGGCCTCTGAGTTTGT+GGG | 0.596858 | 7.2:-319627 | MS.gene024382:intron |
AGGGCAGAAAACTGATAGAC+CGG | 0.597583 | 7.2:-310058 | MS.gene024382:CDS |
AGGAAATGATTGATGACTAG+AGG | 0.599729 | 7.2:+310697 | None:intergenic |
GGAGCTACAGTTGTTGATGC+AGG | 0.599804 | 7.2:+310341 | None:intergenic |
AGAGACTGATGCGCTAGAGA+AGG | 0.599937 | 7.2:-310000 | MS.gene024382:CDS |
GAAGATGCAATTGCAATAAG+TGG | 0.600078 | 7.2:+311443 | None:intergenic |
CCTCCTTCCAAGAATCAAGA+AGG | 0.605249 | 7.2:+309889 | None:intergenic |
GTCTGGAGTGGAGCGCACAC+AGG | 0.605716 | 7.2:+310380 | None:intergenic |
ATGAACAGGGTGCCTCCTTG+AGG | 0.606893 | 7.2:+311212 | None:intergenic |
AGAATGTAAAATACCTGATG+CGG | 0.606991 | 7.2:-309961 | MS.gene024382:CDS |
TCCTCATTTATCAAATCATG+AGG | 0.608307 | 7.2:+309711 | None:intergenic |
TGTACAAAATAACAATGAGG+AGG | 0.608346 | 7.2:-309607 | MS.gene024382:CDS |
GAGGCCAAGGAAAGCAGGGG+CGG | 0.609140 | 7.2:-309504 | MS.gene024382:CDS |
GAGGAGGGATTTCTAACCAT+GGG | 0.609248 | 7.2:-309591 | MS.gene024382:CDS |
CCCTGATTCCAACAAAATGG+AGG | 0.609942 | 7.2:-310078 | MS.gene024382:CDS |
TTGGAAGGAGGTGTCTGAAG+AGG | 0.610275 | 7.2:-309877 | MS.gene024382:intron |
GCTGCAATAGCTGTTACACT+AGG | 0.611198 | 7.2:+310452 | None:intergenic |
ATGCATTTGTAATTGTGACC+AGG | 0.611387 | 7.2:-309649 | MS.gene024382:CDS |
TGTCTGCCAGCTGTCAATTG+TGG | 0.613429 | 7.2:+319668 | None:intergenic |
ATTGCAATTGCATCTTCACA+CGG | 0.615445 | 7.2:-311437 | MS.gene024382:CDS |
CTACATTTCAGCCAATAGGA+GGG | 0.615585 | 7.2:-310796 | MS.gene024382:CDS |
CCCACAAACTCAGAGGCCAT+GGG | 0.615882 | 7.2:+319627 | None:intergenic |
GATAAATGAGGATAATCAGA+TGG | 0.616474 | 7.2:-309700 | MS.gene024382:CDS |
TTATGTGCAAATGGAGGACA+AGG | 0.617284 | 7.2:+310674 | None:intergenic |
TCTCCTGCTTGCTCTCAAGG+AGG | 0.617634 | 7.2:-310503 | MS.gene024382:CDS |
TCATCTGAATCAGAGGAGAG+TGG | 0.620785 | 7.2:-310170 | MS.gene024382:CDS |
GCAATAGCTGTTACACTAGG+AGG | 0.623513 | 7.2:+310455 | None:intergenic |
TTACAAAAGATGTTTAGTAG+AGG | 0.626106 | 7.2:-309523 | MS.gene024382:CDS |
ACATTTCAGCCAATAGGAGG+GGG | 0.626802 | 7.2:-310794 | MS.gene024382:CDS |
AACTTAAGACTCGTCGAACA+GGG | 0.627230 | 7.2:-309554 | MS.gene024382:CDS |
TCTGGAGAATAGAGCCCGAA+AGG | 0.627276 | 7.2:+309761 | None:intergenic |
GGTACCCCAACATTACATAG+TGG | 0.634415 | 7.2:-311482 | MS.gene024382:CDS |
CCTGATTCCAACAAAATGGA+GGG | 0.636366 | 7.2:-310077 | MS.gene024382:CDS |
CAAATTCCTGCACCATAAGG+GGG | 0.636736 | 7.2:-311141 | MS.gene024382:CDS |
GTTCAATCCGAGAAAACAGA+TGG | 0.637949 | 7.2:-310953 | MS.gene024382:CDS |
TCACAAAACAAAGAGAACGT+TGG | 0.639437 | 7.2:-318586 | MS.gene024382:CDS |
TAGCTGCTGCAACTGCATGG+TGG | 0.645180 | 7.2:-310421 | MS.gene024382:CDS |
GTACCAACATTGGTCTTGCG+AGG | 0.646677 | 7.2:+311500 | None:intergenic |
TGAGGAGGTGAAAAGCTTTG+GGG | 0.648977 | 7.2:+309729 | None:intergenic |
TTCTAATGTAAGTACTCGAT+AGG | 0.649741 | 7.2:+320408 | None:intergenic |
AAGTGAAAATCAAAATAACA+TGG | 0.654350 | 7.2:-310726 | MS.gene024382:CDS |
GCATGGTTATGTGCAAATGG+AGG | 0.655038 | 7.2:+310668 | None:intergenic |
TGAGGAGGGATTTCTAACCA+TGG | 0.655042 | 7.2:-309592 | MS.gene024382:CDS |
CAGAAGATATAATATTAACA+AGG | 0.655850 | 7.2:-332122 | MS.gene024382:intron |
ATGGTGCAGGAATTTGTCTG+TGG | 0.659918 | 7.2:+311148 | None:intergenic |
GTAGAGGCCAAGGAAAGCAG+GGG | 0.661260 | 7.2:-309507 | MS.gene024382:CDS |
TCTAGTAACTGATCTTGCAG+AGG | 0.667647 | 7.2:+310254 | None:intergenic |
TTGAAGAGACGGGTCCCAAG+AGG | 0.668417 | 7.2:-309464 | MS.gene024382:CDS |
GCTACAGTTGTTGATGCAGG+AGG | 0.672632 | 7.2:+310344 | None:intergenic |
TCATTTATCAAATCATGAGG+AGG | 0.672771 | 7.2:+309714 | None:intergenic |
TGTGCAAATGGAGGACAAGG+AGG | 0.682903 | 7.2:+310677 | None:intergenic |
AGATGAGGAAAGGCCAACGA+CGG | 0.690777 | 7.2:-311278 | MS.gene024382:CDS |
AAACACACACAAAAGAACGA+TGG | 0.697228 | 7.2:-311019 | MS.gene024382:CDS |
GTTTGTACAAAATAACAATG+AGG | 0.699011 | 7.2:-309610 | MS.gene024382:CDS |
TCGGGCTCTATTCTCCAGAG+AGG | 0.699278 | 7.2:-309757 | MS.gene024382:CDS |
AATCTCACCCACAAACTCAG+AGG | 0.700699 | 7.2:+319620 | None:intergenic |
AGTATTAACAGTCCTCAAGG+AGG | 0.725209 | 7.2:-311224 | MS.gene024382:CDS |
GCCGAAGATACAGATGAACA+GGG | 0.736992 | 7.2:+311199 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 309434 | 332199 | 309434 | ID=MS.gene024382 |
chr7.2 | mRNA | 309434 | 332199 | 309434 | ID=MS.gene024382.t1;Parent=MS.gene024382 |
chr7.2 | exon | 332123 | 332199 | 332123 | ID=MS.gene024382.t1.exon1;Parent=MS.gene024382.t1 |
chr7.2 | CDS | 332123 | 332199 | 332123 | ID=cds.MS.gene024382.t1;Parent=MS.gene024382.t1 |
chr7.2 | exon | 320406 | 320430 | 320406 | ID=MS.gene024382.t1.exon2;Parent=MS.gene024382.t1 |
chr7.2 | CDS | 320406 | 320430 | 320406 | ID=cds.MS.gene024382.t1;Parent=MS.gene024382.t1 |
chr7.2 | exon | 319628 | 319730 | 319628 | ID=MS.gene024382.t1.exon3;Parent=MS.gene024382.t1 |
chr7.2 | CDS | 319628 | 319730 | 319628 | ID=cds.MS.gene024382.t1;Parent=MS.gene024382.t1 |
chr7.2 | exon | 319096 | 319121 | 319096 | ID=MS.gene024382.t1.exon4;Parent=MS.gene024382.t1 |
chr7.2 | CDS | 319096 | 319121 | 319096 | ID=cds.MS.gene024382.t1;Parent=MS.gene024382.t1 |
chr7.2 | exon | 318516 | 318627 | 318516 | ID=MS.gene024382.t1.exon5;Parent=MS.gene024382.t1 |
chr7.2 | CDS | 318516 | 318627 | 318516 | ID=cds.MS.gene024382.t1;Parent=MS.gene024382.t1 |
chr7.2 | exon | 318378 | 318439 | 318378 | ID=MS.gene024382.t1.exon6;Parent=MS.gene024382.t1 |
chr7.2 | CDS | 318378 | 318439 | 318378 | ID=cds.MS.gene024382.t1;Parent=MS.gene024382.t1 |
chr7.2 | exon | 311397 | 311621 | 311397 | ID=MS.gene024382.t1.exon7;Parent=MS.gene024382.t1 |
chr7.2 | CDS | 311397 | 311621 | 311397 | ID=cds.MS.gene024382.t1;Parent=MS.gene024382.t1 |
chr7.2 | exon | 309878 | 311308 | 309878 | ID=MS.gene024382.t1.exon8;Parent=MS.gene024382.t1 |
chr7.2 | CDS | 309878 | 311308 | 309878 | ID=cds.MS.gene024382.t1;Parent=MS.gene024382.t1 |
chr7.2 | exon | 309434 | 309793 | 309434 | ID=MS.gene024382.t1.exon9;Parent=MS.gene024382.t1 |
chr7.2 | CDS | 309434 | 309793 | 309434 | ID=cds.MS.gene024382.t1;Parent=MS.gene024382.t1 |
Gene Sequence |
Protein sequence |