AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024465

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024465.t1 MTR_7g117705 68.051 313 75 4 1 291 1 310 1.26e-136 394
MS.gene024465.t1 MTR_1g013170 77.220 259 59 0 1 259 1 259 5.12e-129 376
MS.gene024465.t1 MTR_1g013180 63.692 325 84 3 1 291 152 476 1.83e-122 365
MS.gene024465.t1 MTR_3g106220 55.063 316 112 4 2 288 5 319 9.77e-101 308
MS.gene024465.t1 MTR_2g450070 51.786 280 122 5 3 272 16 292 2.85e-82 261
MS.gene024465.t1 MTR_2g450070 51.786 280 122 5 3 272 16 292 4.17e-82 261
MS.gene024465.t1 MTR_2g034960 47.222 288 142 4 1 286 25 304 5.38e-76 243
MS.gene024465.t1 MTR_4g131580 53.252 246 112 2 5 250 17 259 7.17e-76 243
MS.gene024465.t1 MTR_1g032570 49.064 267 119 4 4 260 10 269 1.42e-75 242
MS.gene024465.t1 MTR_4g121020 48.507 268 132 2 2 267 28 291 2.57e-75 243
MS.gene024465.t1 MTR_4g121020 48.507 268 132 2 2 267 28 291 2.71e-75 243
MS.gene024465.t1 MTR_4g131600 51.417 247 115 2 1 247 16 257 2.30e-73 236
MS.gene024465.t1 MTR_4g131570 50.988 253 114 3 3 250 15 262 3.03e-72 233
MS.gene024465.t1 MTR_3g086100 48.302 265 120 3 4 255 12 272 2.97e-71 230
MS.gene024465.t1 MTR_8g079940 49.049 263 121 3 3 255 23 282 2.92e-70 226
MS.gene024465.t1 MTR_1g013160 78.378 148 32 0 67 214 1 148 1.12e-69 213
MS.gene024465.t1 MTR_3g102590 47.368 266 84 3 2 263 5 218 3.17e-65 204
MS.gene024465.t1 MTR_3g102590 48.333 240 71 2 2 240 5 192 3.35e-60 190
MS.gene024465.t1 MTR_4g021760 39.431 246 121 5 5 250 11 228 5.40e-51 170
MS.gene024465.t1 MTR_1g032570 49.741 193 82 3 64 247 1 187 1.44e-50 175
MS.gene024465.t1 MTR_4g021790 39.357 249 123 5 2 250 7 227 8.47e-50 166
MS.gene024465.t1 MTR_3g102600 63.846 130 47 0 1 130 4 133 1.03e-47 158
MS.gene024465.t1 MTR_3g102600 63.846 130 47 0 1 130 4 133 1.75e-47 159
MS.gene024465.t1 MTR_4g021855 35.662 272 146 5 2 273 7 249 2.11e-47 160
MS.gene024465.t1 MTR_3g086100 46.829 205 92 3 64 255 1 201 4.06e-47 165
MS.gene024465.t1 MTR_4g021845 37.238 239 122 4 2 240 7 217 5.67e-47 157
MS.gene024465.t1 MTR_6g045327 35.510 245 128 5 4 247 13 228 3.77e-39 141
MS.gene024465.t1 MTR_0450s0040 35.000 240 135 3 9 248 8 226 1.14e-38 139
MS.gene024465.t1 MTR_7g026400 35.060 251 136 5 32 278 14 241 4.77e-35 133
MS.gene024465.t1 MTR_4g121020 40.323 186 105 2 84 267 6 187 5.73e-33 127
MS.gene024465.t1 MTR_3g102600 65.882 85 29 0 47 131 1 85 1.90e-32 117
MS.gene024465.t1 MTR_3g102600 65.882 85 29 0 47 131 1 85 3.09e-32 117
MS.gene024465.t1 MTR_5g055260 32.258 248 113 6 2 249 7 199 1.39e-31 118
MS.gene024465.t1 MTR_8g105600 32.967 273 160 6 5 271 9 264 3.10e-30 119
MS.gene024465.t1 MTR_8g032710 30.315 254 157 7 8 243 20 271 9.58e-28 112
MS.gene024465.t1 MTR_6g016850 36.434 129 79 2 1 127 5 132 1.34e-21 89.7
MS.gene024465.t1 MTR_4g023980 30.675 163 86 3 52 214 36 171 4.93e-21 88.2
MS.gene024465.t1 MTR_3g092780 27.749 191 115 3 9 177 56 245 3.70e-20 90.9
MS.gene024465.t1 MTR_3g092780 27.749 191 115 3 9 177 56 245 4.07e-20 90.5
MS.gene024465.t1 MTR_8g093040 35.484 124 80 0 4 127 13 136 1.25e-19 86.7
MS.gene024465.t1 MTR_8g024260 31.214 173 105 3 6 164 33 205 2.08e-19 88.6
MS.gene024465.t1 MTR_3g037390 29.891 184 118 2 6 178 21 204 2.63e-19 88.2
MS.gene024465.t1 MTR_3g092780 31.169 154 98 3 9 155 56 208 3.65e-19 87.8
MS.gene024465.t1 MTR_3g092780 31.169 154 98 3 9 155 56 208 4.21e-19 87.8
MS.gene024465.t1 MTR_1g067110 36.066 122 75 2 9 127 85 206 3.58e-18 85.1
MS.gene024465.t1 MTR_1g067110 36.066 122 75 2 9 127 85 206 3.89e-18 84.7
MS.gene024465.t1 MTR_4g108880 32.283 127 83 1 6 129 30 156 3.40e-17 82.0
MS.gene024465.t1 MTR_4g061360 35.246 122 76 1 9 127 89 210 3.57e-17 82.0
MS.gene024465.t1 MTR_7g118260 33.846 130 77 2 9 132 14 140 2.85e-16 79.3
MS.gene024465.t1 MTR_7g118260 33.594 128 76 2 9 130 14 138 1.06e-15 77.4
MS.gene024465.t1 MTR_4g064730 46.591 88 45 1 162 247 100 187 5.40e-15 74.3
MS.gene024465.t1 MTR_7g115530 64.815 54 18 1 191 243 218 271 1.03e-14 73.2
MS.gene024465.t1 MTR_7g115530 64.815 54 18 1 191 243 218 271 1.49e-14 73.2
MS.gene024465.t1 MTR_7g115530 64.815 54 18 1 191 243 218 271 1.57e-14 73.6
MS.gene024465.t1 MTR_7g115530 64.815 54 18 1 191 243 218 271 2.46e-14 72.8
MS.gene024465.t1 MTR_1g080330 58.621 58 23 1 187 243 171 228 3.68e-14 71.6
MS.gene024465.t1 MTR_1g080330 58.621 58 23 1 187 243 171 228 4.28e-14 72.4
MS.gene024465.t1 MTR_7g089010 53.448 58 27 0 190 247 90 147 2.21e-13 69.3
MS.gene024465.t1 MTR_2g027800 51.562 64 30 1 187 249 35 98 2.63e-13 69.3
MS.gene024465.t1 MTR_2g027800 46.154 78 40 2 187 262 35 112 3.58e-13 68.9
MS.gene024465.t1 MTR_4g106590 32.824 131 75 2 9 126 26 156 5.30e-13 67.0
MS.gene024465.t1 MTR_7g115530 63.462 52 18 1 191 241 218 269 7.80e-13 67.8
MS.gene024465.t1 MTR_7g098250 55.172 58 25 1 187 243 258 315 9.34e-13 68.6
MS.gene024465.t1 MTR_1g053835 51.613 62 29 1 184 244 251 312 1.40e-12 67.8
MS.gene024465.t1 MTR_1g090670 52.542 59 27 1 187 244 40 98 2.37e-12 66.6
MS.gene024465.t1 MTR_5g027440 42.529 87 39 3 191 266 25 111 2.82e-12 66.2
MS.gene024465.t1 MTR_7g115530 62.745 51 18 1 191 240 218 268 4.20e-12 65.9
MS.gene024465.t1 MTR_2g023580 41.489 94 53 2 190 282 54 146 8.13e-12 64.3
MS.gene024465.t1 MTR_7g093030 57.407 54 22 1 191 243 212 265 1.02e-11 64.7
MS.gene024465.t1 MTR_7g093030 57.407 54 22 1 191 243 212 265 1.10e-11 65.1
MS.gene024465.t1 MTR_4g078810 36.145 83 43 1 186 268 153 225 1.24e-11 65.1
MS.gene024465.t1 MTR_6g032990 50.909 55 26 1 191 244 42 96 1.64e-11 64.7
MS.gene024465.t1 MTR_8g086410 54.386 57 25 1 190 245 108 164 1.83e-11 64.7
MS.gene024465.t1 MTR_8g086410 54.386 57 25 1 190 245 110 166 1.84e-11 64.7
MS.gene024465.t1 MTR_2g090675 36.047 86 45 1 186 271 156 231 1.86e-11 64.3
MS.gene024465.t1 MTR_8g038620 29.286 140 79 3 9 128 9 148 1.95e-11 62.0
MS.gene024465.t1 MTR_7g069660 52.632 57 26 1 190 245 70 126 2.32e-11 63.9
MS.gene024465.t1 MTR_8g086410 43.210 81 45 1 190 269 110 190 2.66e-11 63.9
MS.gene024465.t1 MTR_4g081710 47.273 55 28 1 191 244 17 71 2.69e-11 63.5
MS.gene024465.t1 MTR_2g086450 50.909 55 26 1 191 244 45 99 2.98e-11 63.9
MS.gene024465.t1 MTR_5g014040 50.909 55 27 0 190 244 310 364 3.74e-11 63.9
MS.gene024465.t1 MTR_5g014040 32.331 133 84 3 4 134 13 141 4.66e-11 63.5
MS.gene024465.t1 MTR_4g098870 50.909 55 27 0 190 244 329 383 3.92e-11 63.9
MS.gene024465.t1 MTR_4g098870 50.909 55 27 0 190 244 309 363 4.11e-11 63.5
MS.gene024465.t1 MTR_4g098870 50.909 55 27 0 190 244 348 402 4.13e-11 63.5
MS.gene024465.t1 MTR_4g098870 50.909 55 27 0 190 244 329 383 4.73e-11 63.5
MS.gene024465.t1 MTR_4g098870 50.909 55 27 0 190 244 309 363 4.78e-11 63.5
MS.gene024465.t1 MTR_5g014040 32.331 133 84 3 4 134 13 141 4.95e-11 63.5
MS.gene024465.t1 MTR_5g041350 47.273 55 28 1 191 244 15 69 6.89e-11 62.4
MS.gene024465.t1 MTR_1g053800 50.820 61 29 1 187 246 173 233 8.42e-11 62.0
MS.gene024465.t1 MTR_7g088070 40.909 88 47 3 191 273 50 137 8.49e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024465.t1 AT4G31920 58.301 259 92 2 3 261 11 253 9.51e-91 280
MS.gene024465.t1 AT2G25180 57.088 261 106 3 3 262 11 266 3.01e-88 275
MS.gene024465.t1 AT3G16857 46.102 295 116 6 5 267 33 316 2.71e-74 240
MS.gene024465.t1 AT3G16857 46.102 295 116 6 5 267 33 316 5.22e-74 240
MS.gene024465.t1 AT5G58080 49.104 279 118 4 3 272 12 275 6.31e-71 231
MS.gene024465.t1 AT1G67710 50.000 254 114 4 7 253 9 256 4.77e-69 223
MS.gene024465.t1 AT2G01760 48.031 254 125 3 1 247 3 256 7.18e-69 218
MS.gene024465.t1 AT2G01760 42.662 293 132 5 1 258 3 294 7.42e-63 204
MS.gene024465.t1 AT3G16857 45.136 257 98 6 43 267 1 246 1.98e-59 200
MS.gene024465.t1 AT5G49240 37.872 235 141 4 8 240 41 272 3.42e-45 155
MS.gene024465.t1 AT1G67710 48.731 197 88 4 64 253 1 191 1.20e-44 157
MS.gene024465.t1 AT3G62670 38.554 249 124 8 24 260 54 285 1.25e-43 154
MS.gene024465.t1 AT2G01760 46.073 191 96 3 64 247 1 191 7.81e-43 149
MS.gene024465.t1 AT1G49190 29.808 312 170 6 4 286 29 320 2.28e-38 140
MS.gene024465.t1 AT1G67710 42.938 177 88 4 84 253 12 182 3.47e-30 118
MS.gene024465.t1 AT5G07210 28.625 269 156 6 9 247 16 278 1.02e-29 118
MS.gene024465.t1 AT2G27070 30.108 279 146 7 7 247 14 281 6.61e-29 115
MS.gene024465.t1 AT5G07210 27.798 277 156 7 9 247 16 286 3.52e-27 111
MS.gene024465.t1 AT1G49190 28.448 232 143 6 4 212 29 260 1.74e-22 97.8
MS.gene024465.t1 AT2G46790 37.398 123 72 2 9 127 37 158 1.08e-21 94.7
MS.gene024465.t1 AT2G46790 37.398 123 72 2 9 127 37 158 1.11e-21 94.7
MS.gene024465.t1 AT5G24470 34.109 129 80 2 6 130 47 174 2.49e-20 91.3
MS.gene024465.t1 AT5G61380 34.646 127 80 1 6 129 16 142 1.91e-19 88.6
MS.gene024465.t1 AT5G60100 37.705 122 73 1 9 127 64 185 9.00e-19 85.9
MS.gene024465.t1 AT5G60100 37.705 122 73 1 9 127 64 185 9.00e-19 85.9
MS.gene024465.t1 AT5G60100 37.705 122 73 1 9 127 64 185 9.00e-19 85.9
MS.gene024465.t1 AT5G60100 37.705 122 73 1 9 127 64 185 1.20e-18 86.3
MS.gene024465.t1 AT5G60100 37.705 122 73 1 9 127 64 185 1.20e-18 86.3
MS.gene024465.t1 AT5G60100 37.705 122 73 1 9 127 64 185 1.20e-18 86.3
MS.gene024465.t1 AT5G60100 37.705 122 73 1 9 127 64 185 2.08e-18 85.5
MS.gene024465.t1 AT5G02810 35.246 122 76 1 9 127 78 199 1.08e-17 83.6
MS.gene024465.t1 AT5G59570 47.436 78 41 0 170 247 120 197 1.55e-16 78.6
MS.gene024465.t1 AT5G59570 47.436 78 41 0 170 247 120 197 1.55e-16 78.6
MS.gene024465.t1 AT3G46640 33.918 171 88 4 101 247 31 200 8.10e-15 73.9
MS.gene024465.t1 AT3G46640 33.918 171 88 4 101 247 31 200 9.84e-15 73.6
MS.gene024465.t1 AT3G46640 33.918 171 88 4 101 247 31 200 9.84e-15 73.6
MS.gene024465.t1 AT2G40970 53.448 58 27 0 190 247 104 161 4.03e-14 70.9
MS.gene024465.t1 AT5G44190 44.304 79 34 1 190 268 146 214 5.17e-14 72.0
MS.gene024465.t1 AT5G44190 44.304 79 34 1 190 268 146 214 5.69e-14 71.6
MS.gene024465.t1 AT3G10760 53.448 58 27 0 190 247 104 161 1.16e-13 70.9
MS.gene024465.t1 AT5G05090 53.448 58 27 0 190 247 80 137 1.45e-13 69.7
MS.gene024465.t1 AT3G13040 53.846 65 29 1 181 244 231 295 8.53e-13 68.6
MS.gene024465.t1 AT3G13040 53.846 65 29 1 181 244 231 295 8.53e-13 68.6
MS.gene024465.t1 AT3G13040 53.846 65 29 1 181 244 231 295 8.53e-13 68.6
MS.gene024465.t1 AT5G45580 49.254 67 33 1 179 244 11 77 3.21e-12 65.9
MS.gene024465.t1 AT5G45580 54.545 55 24 1 191 244 7 61 4.81e-12 65.1
MS.gene024465.t1 AT4G13640 41.379 87 48 2 187 270 33 119 5.29e-12 65.5
MS.gene024465.t1 AT4G13640 41.379 87 48 2 187 270 33 119 5.31e-12 65.5
MS.gene024465.t1 AT1G69580 52.727 55 25 1 191 244 34 88 5.48e-12 65.9
MS.gene024465.t1 AT1G69580 52.727 55 25 1 191 244 34 88 5.77e-12 65.9
MS.gene024465.t1 AT3G57040 27.684 177 102 4 9 159 9 185 6.95e-12 64.3
MS.gene024465.t1 AT3G57040 27.684 177 102 4 9 159 9 185 6.95e-12 64.3
MS.gene024465.t1 AT3G24120 40.230 87 49 2 187 270 37 123 1.16e-11 64.3
MS.gene024465.t1 AT2G01060 41.000 100 50 4 182 272 4 103 1.27e-11 64.3
MS.gene024465.t1 AT3G24120 40.230 87 49 2 187 270 37 123 1.33e-11 64.3
MS.gene024465.t1 AT3G04030 50.909 55 26 1 191 244 45 99 1.39e-11 64.7
MS.gene024465.t1 AT3G04030 50.909 55 26 1 191 244 45 99 1.57e-11 64.7
MS.gene024465.t1 AT3G12730 45.070 71 37 2 187 255 19 89 2.02e-11 63.2
MS.gene024465.t1 AT2G20570 34.426 122 61 3 150 271 121 223 2.11e-11 64.3
MS.gene024465.t1 AT3G04030 48.148 54 28 0 191 244 45 98 3.58e-11 63.5
MS.gene024465.t1 AT5G18240 50.909 55 26 1 191 244 45 99 4.72e-11 63.2
MS.gene024465.t1 AT5G18240 50.909 55 26 1 191 244 45 99 4.72e-11 63.2
MS.gene024465.t1 AT5G18240 50.909 55 26 1 191 244 45 99 5.15e-11 63.2
MS.gene024465.t1 AT5G18240 50.909 55 26 1 191 244 45 99 5.15e-11 63.2
MS.gene024465.t1 AT5G18240 50.909 55 26 1 191 244 45 99 5.27e-11 63.2
MS.gene024465.t1 AT2G20570 40.789 76 35 1 196 271 174 239 7.33e-11 62.8

Find 46 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAACTTGTCTCAAGATTT+TGG 0.120883 7.2:+1121356 MS.gene024465:CDS
CTTGTCGCGGTTAACAAATT+TGG 0.304801 7.2:+1122534 MS.gene024465:CDS
CCATTTCCACTATCAGAATT+AGG 0.317534 7.2:-1122336 None:intergenic
TGAAAGAGGTGAAGATGATT+TGG 0.332494 7.2:+1122262 MS.gene024465:CDS
ATGAATGATGAGTTTCGAAT+TGG 0.346923 7.2:+1121306 MS.gene024465:CDS
TTCACCTCTTTCAATTGAAC+AGG 0.352913 7.2:-1122252 None:intergenic
TGAGCTTGTTGGACTTGAAA+TGG 0.372169 7.2:+1122054 MS.gene024465:CDS
TTTAAGCTTCTTGAGCTTGT+TGG 0.375182 7.2:+1122043 MS.gene024465:CDS
CAACGAAATCGAGGCTTCTT+CGG 0.398280 7.2:-1122486 None:intergenic
CCTAATTCTGATAGTGGAAA+TGG 0.401332 7.2:+1122336 MS.gene024465:CDS
CCTCCTAGTGTCAATATACA+TGG 0.410772 7.2:+1123241 MS.gene024465:CDS
ATTGCTTTCATAACCAGCTT+AGG 0.420417 7.2:-1122198 None:intergenic
AGTTGAAAAGTAGTAGTTAT+GGG 0.440897 7.2:+1123152 MS.gene024465:CDS
AAACTTGTGGTGTAAGTCAT+TGG 0.441523 7.2:-1122511 None:intergenic
TTCAGTGCTATTCGTGCACT+TGG 0.445352 7.2:-1121950 None:intergenic
CGAGGCTTCTTCGGCGCAGT+TGG 0.453906 7.2:-1122477 None:intergenic
TATGAACATTACTCATTACT+AGG 0.460796 7.2:-1122003 None:intergenic
AGCTTAAATCCATCCATGTC+TGG 0.471845 7.2:-1122028 None:intergenic
AAGTTGAAAAGTAGTAGTTA+TGG 0.482179 7.2:+1123151 MS.gene024465:CDS
TGAAAATGATGATCCTAAGC+TGG 0.496842 7.2:+1122185 MS.gene024465:CDS
ACATGTGGCCAGCCATCTCC+AGG 0.523004 7.2:+1122871 MS.gene024465:CDS
TTGCATAACTTACTTATGAC+AGG 0.526242 7.2:-1122082 None:intergenic
TAAGAATGAAGATGATGTTG+AGG 0.533063 7.2:+1122422 MS.gene024465:CDS
CTCCACGAAGAAAACTTACA+AGG 0.534436 7.2:-1123290 None:intergenic
GATGTGCCTAATTCTGATAG+TGG 0.537306 7.2:+1122330 MS.gene024465:CDS
CGAAGAAGCCTCGATTTCGT+TGG 0.556982 7.2:+1122487 MS.gene024465:CDS
TATTCGTGCACTTGGAGCAG+TGG 0.566879 7.2:-1121942 None:intergenic
GTTCATATGCCAGACATGGA+TGG 0.584384 7.2:+1122019 MS.gene024465:CDS
TAGTGTCAATATACATGGGT+TGG 0.589409 7.2:+1123246 MS.gene024465:CDS
GAAACCTGTTCAATTGAAAG+AGG 0.592307 7.2:+1122248 MS.gene024465:CDS
GTTATGAAAGCAATTGATCT+CGG 0.596446 7.2:+1122207 MS.gene024465:CDS
GAGTATGATCATGAAAATGA+TGG 0.597211 7.2:+1122453 MS.gene024465:CDS
TAGCCACCATATTAGCTCGA+TGG 0.616049 7.2:-1123180 None:intergenic
CGAGCTAATATGGTGGCTAG+TGG 0.620369 7.2:+1123184 MS.gene024465:CDS
AAATCTTACAAAGGAACATG+TGG 0.625593 7.2:+1122856 MS.gene024465:CDS
ATAACTTACTTATGACAGGT+AGG 0.629417 7.2:-1122078 None:intergenic
CTCCTAGTGTCAATATACAT+GGG 0.630450 7.2:+1123242 MS.gene024465:CDS
CCATGTATATTGACACTAGG+AGG 0.632916 7.2:-1123241 None:intergenic
GAATGTTGAAAATCTTACAA+AGG 0.637383 7.2:+1122847 MS.gene024465:CDS
ACACCACAAGTTTCTTGTCG+CGG 0.645407 7.2:+1122521 MS.gene024465:CDS
CTCGAAAGGTGTCAATACCA+TGG 0.650196 7.2:+1121387 MS.gene024465:CDS
TCATTGGACCAACGAAATCG+AGG 0.660616 7.2:-1122495 None:intergenic
TAATGTTCATATGCCAGACA+TGG 0.666265 7.2:+1122015 MS.gene024465:CDS
TAACCGCGACAAGAAACTTG+TGG 0.669528 7.2:-1122524 None:intergenic
AACCCATGTATATTGACACT+AGG 0.674841 7.2:-1123244 None:intergenic
AAACCATCGAGCTAATATGG+TGG 0.705104 7.2:+1123177 MS.gene024465:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAATATCATTATGAA+AGG - chr7.2:1121898-1121917 None:intergenic 10.0%
!! ATAATATTAATATCATCATT+GGG - chr7.2:1122680-1122699 None:intergenic 10.0%
!! ATCATTAAATTGTAATCATA+AGG + chr7.2:1121473-1121492 MS.gene024465:intron 15.0%
!! CATAATATTAATATCATCAT+TGG - chr7.2:1122681-1122700 None:intergenic 15.0%
!! TCATTAAATTGTAATCATAA+GGG + chr7.2:1121474-1121493 MS.gene024465:intron 15.0%
!!! TTTACAAACACTTTAATTTA+GGG + chr7.2:1123083-1123102 MS.gene024465:intron 15.0%
!!! TTTTACAAACACTTTAATTT+AGG + chr7.2:1123082-1123101 MS.gene024465:intron 15.0%
!! TTAATTTAGGGAAATTTACT+TGG + chr7.2:1123095-1123114 MS.gene024465:intron 20.0%
!!! TAATATAATTGATTCGTACA+AGG - chr7.2:1121653-1121672 None:intergenic 20.0%
!!! TGTGAACTTATGTTATTTTT+TGG + chr7.2:1121801-1121820 MS.gene024465:intron 20.0%
! AAGAGATAAAGAAAAATACC+TGG - chr7.2:1122892-1122911 None:intergenic 25.0%
! AAGTTGAAAAGTAGTAGTTA+TGG + chr7.2:1123151-1123170 MS.gene024465:CDS 25.0%
! AATTAGAACGATAACGTTAA+CGG + chr7.2:1121586-1121605 MS.gene024465:intron 25.0%
! AGCAATAGATAAAAGATTTG+AGG - chr7.2:1122609-1122628 None:intergenic 25.0%
! AGTTGAAAAGTAGTAGTTAT+GGG + chr7.2:1123152-1123171 MS.gene024465:CDS 25.0%
! ATGTATCAGTAACAAAAGAT+TGG - chr7.2:1122112-1122131 None:intergenic 25.0%
! GAATGTTGAAAATCTTACAA+AGG + chr7.2:1122847-1122866 MS.gene024465:CDS 25.0%
! GTGTTTGTAAAATGTAAACT+AGG - chr7.2:1123074-1123093 None:intergenic 25.0%
! TAAATTGTAATCATAAGGGA+CGG + chr7.2:1121478-1121497 MS.gene024465:intron 25.0%
! TATGAACATTACTCATTACT+AGG - chr7.2:1122006-1122025 None:intergenic 25.0%
! TTTATCAAAGATGTTTGAGT+AGG + chr7.2:1122644-1122663 MS.gene024465:intron 25.0%
!! AATCTTTGAGAGAATTTGAT+CGG - chr7.2:1121730-1121749 None:intergenic 25.0%
!! ATCAAGTTAAGAATCTTTTG+TGG - chr7.2:1122827-1122846 None:intergenic 25.0%
!! TTATCCTTTCTTTTTCTAGA+TGG - chr7.2:1122405-1122424 None:intergenic 25.0%
AAAGCCATCTAGAAAAAGAA+AGG + chr7.2:1122398-1122417 MS.gene024465:CDS 30.0%
AAATCTTACAAAGGAACATG+TGG + chr7.2:1122856-1122875 MS.gene024465:CDS 30.0%
ATAACTTACTTATGACAGGT+AGG - chr7.2:1122081-1122100 None:intergenic 30.0%
ATCGAATGAATCCAACAATT+TGG - chr7.2:1121848-1121867 None:intergenic 30.0%
ATGAATGATGAGTTTCGAAT+TGG + chr7.2:1121306-1121325 MS.gene024465:CDS 30.0%
GAGTATGATCATGAAAATGA+TGG + chr7.2:1122453-1122472 MS.gene024465:CDS 30.0%
GATCAAATTCTCTCAAAGAT+TGG + chr7.2:1121729-1121748 MS.gene024465:intron 30.0%
GTTATGAAAGCAATTGATCT+CGG + chr7.2:1122207-1122226 MS.gene024465:CDS 30.0%
TAAAGAAAAATACCTGGAGA+TGG - chr7.2:1122886-1122905 None:intergenic 30.0%
TAAGAATGAAGATGATGTTG+AGG + chr7.2:1122422-1122441 MS.gene024465:CDS 30.0%
TTGCATAACTTACTTATGAC+AGG - chr7.2:1122085-1122104 None:intergenic 30.0%
TTTAACTGCATCCAAATTGT+TGG + chr7.2:1121834-1121853 MS.gene024465:intron 30.0%
! AAAGAAAAAGAAGCATACCA+TGG - chr7.2:1121407-1121426 None:intergenic 30.0%
! CACTTCTAATCTAAGGTTAT+CGG - chr7.2:1121509-1121528 None:intergenic 30.0%
! CATTTTCTTCGATACTGTTT+AGG + chr7.2:1121684-1121703 MS.gene024465:intron 30.0%
!!! AGTTGTTATTTTGTTTGCAG+AGG + chr7.2:1122796-1122815 MS.gene024465:intron 30.0%
AAACTTGTGGTGTAAGTCAT+TGG - chr7.2:1122514-1122533 None:intergenic 35.0%
AACCCATGTATATTGACACT+AGG - chr7.2:1123247-1123266 None:intergenic 35.0%
AGACAATCATGACAAAGACA+CGG + chr7.2:1122936-1122955 MS.gene024465:intron 35.0%
ATTACAATGCCTTAGCGAAA+AGG - chr7.2:1121569-1121588 None:intergenic 35.0%
ATTGCTTTCATAACCAGCTT+AGG - chr7.2:1122201-1122220 None:intergenic 35.0%
CCATTTCCACTATCAGAATT+AGG - chr7.2:1122339-1122358 None:intergenic 35.0%
CTCCTAGTGTCAATATACAT+GGG + chr7.2:1123242-1123261 MS.gene024465:CDS 35.0%
GAAAAACCATCGAGCTAATA+TGG + chr7.2:1123174-1123193 MS.gene024465:CDS 35.0%
GAAACCTGTTCAATTGAAAG+AGG + chr7.2:1122248-1122267 MS.gene024465:CDS 35.0%
TAATGTTCATATGCCAGACA+TGG + chr7.2:1122015-1122034 MS.gene024465:CDS 35.0%
TAGTGTCAATATACATGGGT+TGG + chr7.2:1123246-1123265 MS.gene024465:CDS 35.0%
TGAAAATGATGATCCTAAGC+TGG + chr7.2:1122185-1122204 MS.gene024465:CDS 35.0%
TGAAAGAGGTGAAGATGATT+TGG + chr7.2:1122262-1122281 MS.gene024465:CDS 35.0%
TTCACCTCTTTCAATTGAAC+AGG - chr7.2:1122255-1122274 None:intergenic 35.0%
TTTAAGCTTCTTGAGCTTGT+TGG + chr7.2:1122043-1122062 MS.gene024465:CDS 35.0%
! CAGAACTTGTCTCAAGATTT+TGG + chr7.2:1121356-1121375 MS.gene024465:CDS 35.0%
! TCTTTAGATCCTTTTCGCTA+AGG + chr7.2:1121557-1121576 MS.gene024465:intron 35.0%
! TTTTGCACATTGAAAGCAGA+GGG - chr7.2:1122578-1122597 None:intergenic 35.0%
! TTTTTGCACATTGAAAGCAG+AGG - chr7.2:1122579-1122598 None:intergenic 35.0%
!! CCTAATTCTGATAGTGGAAA+TGG + chr7.2:1122336-1122355 MS.gene024465:CDS 35.0%
!! TTATTTTGTTTGCAGAGGCT+AGG + chr7.2:1122801-1122820 MS.gene024465:intron 35.0%
AAACCATCGAGCTAATATGG+TGG + chr7.2:1123177-1123196 MS.gene024465:CDS 40.0%
AGCTTAAATCCATCCATGTC+TGG - chr7.2:1122031-1122050 None:intergenic 40.0%
CCATGTATATTGACACTAGG+AGG - chr7.2:1123244-1123263 None:intergenic 40.0%
CCTCCTAGTGTCAATATACA+TGG + chr7.2:1123241-1123260 MS.gene024465:CDS 40.0%
CTTGTCGCGGTTAACAAATT+TGG + chr7.2:1122534-1122553 MS.gene024465:CDS 40.0%
GATGTGCCTAATTCTGATAG+TGG + chr7.2:1122330-1122349 MS.gene024465:CDS 40.0%
TTGTTGGATTCATTCGATGC+AGG + chr7.2:1121850-1121869 MS.gene024465:intron 40.0%
!! CGTCATAGCAAGAGTATTTG+AGG - chr7.2:1122745-1122764 None:intergenic 40.0%
!! TGAGCTTGTTGGACTTGAAA+TGG + chr7.2:1122054-1122073 MS.gene024465:CDS 40.0%
!! TTTTGGAGAGACTTCTCGAA+AGG + chr7.2:1121373-1121392 MS.gene024465:CDS 40.0%
ACACCACAAGTTTCTTGTCG+CGG + chr7.2:1122521-1122540 MS.gene024465:CDS 45.0%
CAACGAAATCGAGGCTTCTT+CGG - chr7.2:1122489-1122508 None:intergenic 45.0%
GAAAAATACCTGGAGATGGC+TGG - chr7.2:1122882-1122901 None:intergenic 45.0%
GCAGCGACACTTCTAATCTA+AGG - chr7.2:1121516-1121535 None:intergenic 45.0%
GTTCATATGCCAGACATGGA+TGG + chr7.2:1122019-1122038 MS.gene024465:CDS 45.0%
TAACCGCGACAAGAAACTTG+TGG - chr7.2:1122527-1122546 None:intergenic 45.0%
TAGCCACCATATTAGCTCGA+TGG - chr7.2:1123183-1123202 None:intergenic 45.0%
TCATTGGACCAACGAAATCG+AGG - chr7.2:1122498-1122517 None:intergenic 45.0%
! TTCAGTGCTATTCGTGCACT+TGG - chr7.2:1121953-1121972 None:intergenic 45.0%
!! CTCGAAAGGTGTCAATACCA+TGG + chr7.2:1121387-1121406 MS.gene024465:CDS 45.0%
CGAAGAAGCCTCGATTTCGT+TGG + chr7.2:1122487-1122506 MS.gene024465:CDS 50.0%
CGAGCTAATATGGTGGCTAG+TGG + chr7.2:1123184-1123203 MS.gene024465:CDS 50.0%
TATTCGTGCACTTGGAGCAG+TGG - chr7.2:1121945-1121964 None:intergenic 50.0%
ACATGTGGCCAGCCATCTCC+AGG + chr7.2:1122871-1122890 MS.gene024465:CDS 60.0%
CGAGGCTTCTTCGGCGCAGT+TGG - chr7.2:1122480-1122499 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 1121306 1123297 1121306 ID=MS.gene024465
chr7.2 mRNA 1121306 1123297 1121306 ID=MS.gene024465.t1;Parent=MS.gene024465
chr7.2 exon 1121306 1121408 1121306 ID=MS.gene024465.t1.exon1;Parent=MS.gene024465.t1
chr7.2 CDS 1121306 1121408 1121306 ID=cds.MS.gene024465.t1;Parent=MS.gene024465.t1
chr7.2 exon 1121939 1122091 1121939 ID=MS.gene024465.t1.exon2;Parent=MS.gene024465.t1
chr7.2 CDS 1121939 1122091 1121939 ID=cds.MS.gene024465.t1;Parent=MS.gene024465.t1
chr7.2 exon 1122178 1122564 1122178 ID=MS.gene024465.t1.exon3;Parent=MS.gene024465.t1
chr7.2 CDS 1122178 1122564 1122178 ID=cds.MS.gene024465.t1;Parent=MS.gene024465.t1
chr7.2 exon 1122816 1122892 1122816 ID=MS.gene024465.t1.exon4;Parent=MS.gene024465.t1
chr7.2 CDS 1122816 1122892 1122816 ID=cds.MS.gene024465.t1;Parent=MS.gene024465.t1
chr7.2 exon 1123139 1123297 1123139 ID=MS.gene024465.t1.exon5;Parent=MS.gene024465.t1
chr7.2 CDS 1123139 1123297 1123139 ID=cds.MS.gene024465.t1;Parent=MS.gene024465.t1
Gene Sequence

>MS.gene024465

ATGAATGATGAGTTTCGAATTGGAATGAATATTCTTGCTGTTGATGATGACAGAACTTGTCTCAAGATTTTGGAGAGACTTCTCGAAAGGTGTCAATACCATGGTATGCTTCTTTTTCTTTTTTAAATATTAAAAAATTGTTTTTGACTATGAAGCAGTGACACGACATCATTAAATTGTAATCATAAGGGACGGTGCGTCCGATAACCTTAGATTAGAAGTGTCGCTGCTACAAAAGTTTTAGATTTGATTCTTTAGATCCTTTTCGCTAAGGCATTGTAATTAGAACGATAACGTTAACGGTTTCTTTTTCTTCTATTTTTTCTACATTAGTCTAGCTAATGCCTTGTACGAATCAATTATATTAGTTTAGTCTTACATTTTCTTCGATACTGTTTAGGTTCTACTAAATTATATTTGACCGATCAAATTCTCTCAAAGATTGGACGTTTTTAAAGTTCACAGTTTTAAAAAAAAATCTTGTGTCTAATCTTTTGTGAACTTATGTTATTTTTTGGATTTCAAATATTTAACTGCATCCAAATTGTTGGATTCATTCGATGCAGGACATAATGTATCAATTATTTTTCCTTTCATAATGATATTAATTTTAGTTATAATTATTTGTTGCAGTAACCACTGCTCCAAGTGCACGAATAGCACTGAATTTGTTAAGAGAAAACAAAAACAATTTTGACCTAGTAATGAGTAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAAATGGACCTACCTGTCATAAGTAAGTTATGCAATTCTCCAATCTTTTGTTACTGATACATTTATAACAAATTATCAACTGTTTTAATTACAAAGTTTTGTTTTCAGTGTTTTCTGAAAATGATGATCCTAAGCTGGTTATGAAAGCAATTGATCTCGGTGCTTGTGATTATCTGCTGAAACCTGTTCAATTGAAAGAGGTGAAGATGATTTGGCAACATGTAATCAGAAAGAAGAAAACTAGCAAAAGAAGCAATCACGATGTGCCTAATTCTGATAGTGGAAATGGAATAGATTCAACTGTGACAAAAAATTCTGATAAAATTGAAAAGCCATCTAGAAAAAGAAAGGATAAGAATGAAGATGATGTTGAGGAAGAGAATGAGTATGATCATGAAAATGATGGTCCAACTGCGCCGAAGAAGCCTCGATTTCGTTGGTCCAATGACTTACACCACAAGTTTCTTGTCGCGGTTAACAAATTTGGCGTTGAAAGTATGTTCTTCCCTCTGCTTTCAATGTGCAAAAACAACTATCCTCAAATCTTTTATCTATTGCTATATTCGTCTTTATTTTTATCAAAGATGTTTGAGTAGGTTATAGCAATCCCAATGATGATATTAATATTATGATATGAAAACGAAAATTATACTTTGTTTTATTTGAAGATTTCCTCAAATACTCTTGCTATGACGTTTTTCAACATTGAACTGTGTTTCTCATTATAGTTGTTATTTTGTTTGCAGAGGCTAGGCCACAAAAGATTCTTAACTTGATGAATGTTGAAAATCTTACAAAGGAACATGTGGCCAGCCATCTCCAGGTATTTTTCTTTATCTCTTATGCTTTAGCTTTTTAAGCTATGAAGACAATCATGACAAAGACACGGATGCAAGACATGACACTGACACAATGACACTGCTATAAATTTATAAATTTTTAGTAATTAAATTAAATGTTAAATTAATTTCATGTATAGTGTCAAACACTAGACACACTTACCTAGTTTACATTTTACAAACACTTTAATTTAGGGAAATTTACTTGGTTTTTGTTTTTAAATCTGCAGAAATATAGACTAAAGTTGAAAAGTAGTAGTTATGGGAAAAACCATCGAGCTAATATGGTGGCTAGTGGTTCTGATACATCATCTCACTCAAGAATTGACACTCCTCCTAGTGTCAATATACATGGGTTGGCTACTCTTGATTTAAACAACTCCTTGTAA
Protein sequence

>MS.gene024465.t1

MNDEFRIGMNILAVDDDRTCLKILERLLERCQYHVTTAPSARIALNLLRENKNNFDLVMSNVHMPDMDGFKLLELVGLEMDLPVIMFSENDDPKLVMKAIDLGACDYLLKPVQLKEVKMIWQHVIRKKKTSKRSNHDVPNSDSGNGIDSTVTKNSDKIEKPSRKRKDKNEDDVEEENEYDHENDGPTAPKKPRFRWSNDLHHKFLVAVNKFGVEKARPQKILNLMNVENLTKEHVASHLQKYRLKLKSSSYGKNHRANMVASGSDTSSHSRIDTPPSVNIHGLATLDLNNSL