Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024508.t1 | XP_003626470.1 | 97.3 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 9.60E-117 | 429.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024508.t1 | Q8VYF7 | 58.0 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 2.1e-67 | 256.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024508.t1 | G7L2W4 | 97.3 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 6.9e-117 | 429.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene024508.t1 | TF | Whirly |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024508.t1 | MTR_7g116270 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 9.07e-163 | 448 |
| MS.gene024508.t1 | MTR_5g038560 | 39.894 | 188 | 109 | 2 | 37 | 222 | 76 | 261 | 3.52e-47 | 156 |
| MS.gene024508.t1 | MTR_8g468570 | 40.244 | 164 | 96 | 1 | 37 | 198 | 75 | 238 | 5.37e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024508.t1 | AT1G71260 | 57.983 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 4.95e-91 | 267 |
| MS.gene024508.t1 | AT2G02740 | 42.408 | 191 | 100 | 4 | 39 | 222 | 81 | 268 | 1.03e-51 | 168 |
| MS.gene024508.t1 | AT1G14410 | 40.838 | 191 | 96 | 3 | 42 | 222 | 80 | 263 | 1.72e-51 | 167 |
Find 50 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGCGTTGCCACACATTA+TGG | 0.228816 | 7.2:-1634566 | MS.gene024508:CDS |
| GCTTGCTTCCTTCATCTTCC+AGG | 0.275752 | 7.2:-1637436 | MS.gene024508:intron |
| TTGCCCTTGTAAACAGAATA+AGG | 0.288907 | 7.2:+1637144 | None:intergenic |
| AAAATTTGTGAGTTCATCTT+TGG | 0.301520 | 7.2:+1634493 | None:intergenic |
| AGGAACACTAAAATTCTCTT+TGG | 0.325050 | 7.2:+1635491 | None:intergenic |
| ATGAGTTTCATGCCTGCTAT+TGG | 0.341936 | 7.2:-1636768 | MS.gene024508:CDS |
| GAAAGAATTCACATGAATCT+TGG | 0.354145 | 7.2:+1635915 | None:intergenic |
| AAAGAATTCACATGAATCTT+GGG | 0.363397 | 7.2:+1635916 | None:intergenic |
| TGAGTTTCATGCCTGCTATT+GGG | 0.372914 | 7.2:-1636767 | MS.gene024508:CDS |
| GCAAACTCAGCAGTTGTAAC+AGG | 0.373789 | 7.2:+1635471 | None:intergenic |
| AGGCATGAAACTCATCATTA+TGG | 0.404570 | 7.2:+1636776 | None:intergenic |
| GTGAAACAGGAATCATCTAT+TGG | 0.407409 | 7.2:-1637332 | MS.gene024508:intron |
| TTTGCGTTGCCACACATTAT+GGG | 0.408601 | 7.2:-1634565 | MS.gene024508:CDS |
| AGCAGAATAGTTGTTATTTG+TGG | 0.411050 | 7.2:+1637279 | None:intergenic |
| TGCTCCTTATTCTGTTTACA+AGG | 0.424645 | 7.2:-1637148 | MS.gene024508:CDS |
| GTTGCCACACATTATGGGTT+GGG | 0.425766 | 7.2:-1634560 | MS.gene024508:CDS |
| AACCGACTTCAGTAGCTGAT+AGG | 0.440719 | 7.2:+1635957 | None:intergenic |
| CGTTGCCACACATTATGGGT+TGG | 0.443320 | 7.2:-1634561 | MS.gene024508:CDS |
| ATATACCTTGATTTCATTGA+GGG | 0.447907 | 7.2:+1635887 | None:intergenic |
| GTCGGTTCTTTGATAGCCAT+TGG | 0.458218 | 7.2:-1635941 | MS.gene024508:CDS |
| TTCTTATGCTGCAGTAATGC+TGG | 0.463315 | 7.2:-1635705 | MS.gene024508:intron |
| TTGGGGAGCGCAAATATGAC+TGG | 0.493872 | 7.2:-1636749 | MS.gene024508:CDS |
| GCAGTAATGCTGGTCAAGTA+AGG | 0.498490 | 7.2:-1635695 | MS.gene024508:intron |
| AATAACAACTATTCTGCTAA+AGG | 0.500782 | 7.2:-1637274 | MS.gene024508:intron |
| GAGTTTCATGCCTGCTATTG+GGG | 0.513089 | 7.2:-1636766 | MS.gene024508:CDS |
| ATTGGAAGTTCTTTCCGCTA+GGG | 0.516317 | 7.2:-1637314 | MS.gene024508:CDS |
| ATGACCCCTCAATGAAATCA+AGG | 0.516531 | 7.2:-1635892 | MS.gene024508:intron |
| TTGAAAGCTGACTGTCCCAC+TGG | 0.516551 | 7.2:+1634516 | None:intergenic |
| AATATACCTTGATTTCATTG+AGG | 0.524866 | 7.2:+1635886 | None:intergenic |
| GCCCTATCAGCTACTGAAGT+CGG | 0.527679 | 7.2:-1635959 | MS.gene024508:CDS |
| ACCGACTTCAGTAGCTGATA+GGG | 0.538316 | 7.2:+1635958 | None:intergenic |
| AGGGAGTACCTGGAAGATGA+AGG | 0.540073 | 7.2:+1637428 | None:intergenic |
| TATTTGCGCTCCCCAATAGC+AGG | 0.541622 | 7.2:+1636756 | None:intergenic |
| TATTGGAAGTTCTTTCCGCT+AGG | 0.545874 | 7.2:-1637315 | MS.gene024508:CDS |
| ACAAAGTAGCCATTGCTATG+AGG | 0.558527 | 7.2:+1635654 | None:intergenic |
| ACATGAATCTTGGGGACCAA+TGG | 0.561311 | 7.2:+1635925 | None:intergenic |
| TCAATTAAGCCTCATAGCAA+TGG | 0.569726 | 7.2:-1635663 | MS.gene024508:CDS |
| ACATCCAACTTAGTAAAAGT+AGG | 0.596084 | 7.2:+1637093 | None:intergenic |
| GCTCCTTATTCTGTTTACAA+GGG | 0.608711 | 7.2:-1637147 | MS.gene024508:CDS |
| ATTCTCTTTGGTATTTAACA+CGG | 0.610530 | 7.2:+1635503 | None:intergenic |
| TATACCTTGATTTCATTGAG+GGG | 0.613978 | 7.2:+1635888 | None:intergenic |
| TAACTAATCAGCAGTCCAGT+GGG | 0.621978 | 7.2:-1634531 | MS.gene024508:CDS |
| AAGAATTCACATGAATCTTG+GGG | 0.637953 | 7.2:+1635917 | None:intergenic |
| AAAGAGGCATACACTGCAAG+CGG | 0.640513 | 7.2:+1635437 | None:intergenic |
| TGGGGAGCGCAAATATGACT+GGG | 0.642764 | 7.2:-1636748 | MS.gene024508:CDS |
| CTAACTAATCAGCAGTCCAG+TGG | 0.653328 | 7.2:-1634532 | MS.gene024508:CDS |
| TTAGTAAAAGTAGGAAGACA+AGG | 0.653333 | 7.2:+1637102 | None:intergenic |
| CGATCCCAACCCATAATGTG+TGG | 0.655749 | 7.2:+1634556 | None:intergenic |
| GCTCTTGTTGTTGATCGTCG+CGG | 0.693088 | 7.2:-1636801 | MS.gene024508:CDS |
| GGCAGTAGAGAAATCCCTAG+CGG | 0.738730 | 7.2:+1637300 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATTGTTTAAATACTA+TGG | - | chr7.2:1635176-1635195 | MS.gene024508:intron | 15.0% |
| !! | AATGATAATAAAAGAAAGTT+TGG | + | chr7.2:1636546-1636565 | None:intergenic | 15.0% |
| !! | GTAAATTGTAATATTTAAGA+AGG | - | chr7.2:1637350-1637369 | MS.gene024508:intron | 15.0% |
| !! | TATTATTATTATTGTGAAAC+AGG | - | chr7.2:1634353-1634372 | MS.gene024508:intron | 15.0% |
| !! | AAGAAAGAAGAAAGAATAAA+AGG | + | chr7.2:1635000-1635019 | None:intergenic | 20.0% |
| !! | AGGAATGTATTTAAATGATT+AGG | + | chr7.2:1634643-1634662 | None:intergenic | 20.0% |
| !! | TAAAAATGTTGAATCAAGTT+TGG | + | chr7.2:1636694-1636713 | None:intergenic | 20.0% |
| !! | TCAACAAACAAAAAAACTAA+TGG | + | chr7.2:1635933-1635952 | None:intergenic | 20.0% |
| !! | TCTCTATTACAAAATAAGAA+AGG | + | chr7.2:1635576-1635595 | None:intergenic | 20.0% |
| !!! | ATTTTTATGCTTACATTGAT+TGG | - | chr7.2:1634480-1634499 | MS.gene024508:CDS | 20.0% |
| !!! | TTTTAATACATTGGGTATTT+GGG | - | chr7.2:1636104-1636123 | MS.gene024508:intron | 20.0% |
| ! | AAAATTTGTGAGTTCATCTT+TGG | + | chr7.2:1637208-1637227 | None:intergenic | 25.0% |
| ! | AAAGAATTCACATGAATCTT+GGG | + | chr7.2:1635785-1635804 | None:intergenic | 25.0% |
| ! | AAGCAGAAAAAGAATAAACA+AGG | + | chr7.2:1637435-1637454 | None:intergenic | 25.0% |
| ! | AATAACAACTATTCTGCTAA+AGG | - | chr7.2:1634424-1634443 | MS.gene024508:intron | 25.0% |
| ! | AATATACCTTGATTTCATTG+AGG | + | chr7.2:1635815-1635834 | None:intergenic | 25.0% |
| ! | AGAATAACATATTGTCAACT+TGG | - | chr7.2:1635593-1635612 | MS.gene024508:intron | 25.0% |
| ! | ATAACAGAGAAATTGAAAGA+AGG | + | chr7.2:1634310-1634329 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+TGG | - | chr7.2:1634823-1634842 | MS.gene024508:intron | 25.0% |
| ! | ATATACCTTGATTTCATTGA+GGG | + | chr7.2:1635814-1635833 | None:intergenic | 25.0% |
| ! | ATATTATATGCTTCACTTTC+AGG | - | chr7.2:1634506-1634525 | MS.gene024508:CDS | 25.0% |
| ! | ATTACAAGTTTACAAAGTAG+TGG | - | chr7.2:1635204-1635223 | MS.gene024508:intron | 25.0% |
| ! | ATTCTCTTTGGTATTTAACA+CGG | + | chr7.2:1636198-1636217 | None:intergenic | 25.0% |
| ! | CAAATACCCAATGTATTAAA+AGG | + | chr7.2:1636105-1636124 | None:intergenic | 25.0% |
| ! | GAATAAGCTATTTGTATAAG+CGG | + | chr7.2:1634788-1634807 | None:intergenic | 25.0% |
| ! | GTCACTAATTAACTTTCAAA+TGG | + | chr7.2:1635963-1635982 | None:intergenic | 25.0% |
| ! | TAAAAGTTGAAAACATGAAG+CGG | + | chr7.2:1635549-1635568 | None:intergenic | 25.0% |
| ! | TACTGTTGGAAAATATGAAA+TGG | - | chr7.2:1637252-1637271 | MS.gene024508:intron | 25.0% |
| ! | TCTCTCATGAGATAATTAAT+TGG | + | chr7.2:1635868-1635887 | None:intergenic | 25.0% |
| ! | TGTCTTAAATAACAATGAAG+TGG | - | chr7.2:1636366-1636385 | MS.gene024508:intron | 25.0% |
| ! | TTCAAAAATTGCAGTTAACT+AGG | + | chr7.2:1636949-1636968 | None:intergenic | 25.0% |
| !! | ATTAAAAGCACAAGTATGAT+TGG | + | chr7.2:1637068-1637087 | None:intergenic | 25.0% |
| !! | CTTTTAATACATTGGGTATT+TGG | - | chr7.2:1636103-1636122 | MS.gene024508:intron | 25.0% |
| !! | TGGATTGATAATACACAAAA+TGG | + | chr7.2:1637300-1637319 | None:intergenic | 25.0% |
| !! | TGTTCACCTTTTAATACATT+GGG | - | chr7.2:1636096-1636115 | MS.gene024508:intron | 25.0% |
| !! | TTAAAAGCACAAGTATGATT+GGG | + | chr7.2:1637067-1637086 | None:intergenic | 25.0% |
| !! | TTACACTTTTATTGTCATTC+CGG | - | chr7.2:1636746-1636765 | MS.gene024508:CDS | 25.0% |
| !! | TTGTTCACCTTTTAATACAT+TGG | - | chr7.2:1636095-1636114 | MS.gene024508:intron | 25.0% |
| !!! | TTAAGAGCATTTTATTGTCT+CGG | - | chr7.2:1635479-1635498 | MS.gene024508:CDS | 25.0% |
| !!! | TTTTGTTTTCAGGTAATGAT+TGG | - | chr7.2:1636808-1636827 | MS.gene024508:CDS | 25.0% |
| AACTTCCGAAACAATGTATT+AGG | + | chr7.2:1635619-1635638 | None:intergenic | 30.0% | |
| AAGAATTCACATGAATCTTG+GGG | + | chr7.2:1635784-1635803 | None:intergenic | 30.0% | |
| AAGAGTTTAAAGAGACATGA+GGG | + | chr7.2:1635461-1635480 | None:intergenic | 30.0% | |
| AAGTTCTACTTGATACTTGT+AGG | - | chr7.2:1635634-1635653 | MS.gene024508:intron | 30.0% | |
| AATTGTGTTTACGTCTATTG+TGG | - | chr7.2:1635108-1635127 | MS.gene024508:intron | 30.0% | |
| ACATCCAACTTAGTAAAAGT+AGG | + | chr7.2:1634608-1634627 | None:intergenic | 30.0% | |
| AGGAACACTAAAATTCTCTT+TGG | + | chr7.2:1636210-1636229 | None:intergenic | 30.0% | |
| ATCTCATGAGAGAACTATAT+AGG | - | chr7.2:1635875-1635894 | MS.gene024508:intron | 30.0% | |
| CCTGAAAACAAAACAATAGT+CGG | + | chr7.2:1636801-1636820 | None:intergenic | 30.0% | |
| GAAAGAATTCACATGAATCT+TGG | + | chr7.2:1635786-1635805 | None:intergenic | 30.0% | |
| GTATATTTCACGATTCTCTA+GGG | - | chr7.2:1635828-1635847 | MS.gene024508:intron | 30.0% | |
| GTATTATCAATCCAAAGACT+AGG | - | chr7.2:1637306-1637325 | MS.gene024508:CDS | 30.0% | |
| GTCCAGAATCAGATAAAATA+GGG | + | chr7.2:1637045-1637064 | None:intergenic | 30.0% | |
| GTGTAACGTAATGACATAAT+GGG | + | chr7.2:1636309-1636328 | None:intergenic | 30.0% | |
| TAAGAGTTTAAAGAGACATG+AGG | + | chr7.2:1635462-1635481 | None:intergenic | 30.0% | |
| TACACCTTTCACAAGTTATA+TGG | - | chr7.2:1636324-1636343 | MS.gene024508:intron | 30.0% | |
| TATACCTTGATTTCATTGAG+GGG | + | chr7.2:1635813-1635832 | None:intergenic | 30.0% | |
| TCCAGAATCAGATAAAATAG+GGG | + | chr7.2:1637044-1637063 | None:intergenic | 30.0% | |
| TTAAATACTACAGTTGTAGC+AGG | - | chr7.2:1635293-1635312 | MS.gene024508:intron | 30.0% | |
| TTAGTAAAAGTAGGAAGACA+AGG | + | chr7.2:1634599-1634618 | None:intergenic | 30.0% | |
| ! | AAATACATTCCTTTTTACGC+TGG | - | chr7.2:1634651-1634670 | MS.gene024508:intron | 30.0% |
| ! | ACAAATTTTAGACTTGGAGT+GGG | - | chr7.2:1637219-1637238 | MS.gene024508:intron | 30.0% |
| ! | ATCATTGTTCTTTCTAGCAT+TGG | - | chr7.2:1636408-1636427 | MS.gene024508:intron | 30.0% |
| ! | ATTTCCATTTGTTACAGTCT+GGG | - | chr7.2:1634874-1634893 | MS.gene024508:intron | 30.0% |
| ! | GAACTCACAAATTTTAGACT+TGG | - | chr7.2:1637213-1637232 | MS.gene024508:intron | 30.0% |
| !! | AGCAGAATAGTTGTTATTTG+TGG | + | chr7.2:1634422-1634441 | None:intergenic | 30.0% |
| !! | TCTTCCTACTTTTACTAAGT+TGG | - | chr7.2:1634601-1634620 | MS.gene024508:intron | 30.0% |
| !! | TTTCTGCTTTTGTTTACTTC+AGG | - | chr7.2:1637446-1637465 | MS.gene024508:CDS | 30.0% |
| !!! | TAAGAGCATTTTATTGTCTC+GGG | - | chr7.2:1635480-1635499 | MS.gene024508:CDS | 30.0% |
| AAAAACCAACCAGCGTAAAA+AGG | + | chr7.2:1634663-1634682 | None:intergenic | 35.0% | |
| AAGAGGGAGACAAAATCATA+AGG | + | chr7.2:1636157-1636176 | None:intergenic | 35.0% | |
| AATCAGATAAAATAGGGGGT+GGG | + | chr7.2:1637039-1637058 | None:intergenic | 35.0% | |
| AGACATGAAAAGCAGAAACT+AGG | + | chr7.2:1636351-1636370 | None:intergenic | 35.0% | |
| AGAGTTTAAAGAGACATGAG+GGG | + | chr7.2:1635460-1635479 | None:intergenic | 35.0% | |
| AGGCATGAAACTCATCATTA+TGG | + | chr7.2:1634925-1634944 | None:intergenic | 35.0% | |
| CATATACGCGAGTTAATCAT+AGG | + | chr7.2:1636868-1636887 | None:intergenic | 35.0% | |
| CCAGAATCAGATAAAATAGG+GGG | + | chr7.2:1637043-1637062 | None:intergenic | 35.0% | |
| CGAAGATTGATCATGAAGTT+CGG | - | chr7.2:1635083-1635102 | MS.gene024508:intron | 35.0% | |
| CTTGGCCTAATACATTGTTT+CGG | - | chr7.2:1635611-1635630 | MS.gene024508:intron | 35.0% | |
| GAAAGAAGGAAAGAGATTGT+AGG | + | chr7.2:1634296-1634315 | None:intergenic | 35.0% | |
| GCTCCTTATTCTGTTTACAA+GGG | - | chr7.2:1634551-1634570 | MS.gene024508:CDS | 35.0% | |
| GGTATATTTCACGATTCTCT+AGG | - | chr7.2:1635827-1635846 | MS.gene024508:intron | 35.0% | |
| GGTCCAGAATCAGATAAAAT+AGG | + | chr7.2:1637046-1637065 | None:intergenic | 35.0% | |
| GGTGTAACGTAATGACATAA+TGG | + | chr7.2:1636310-1636329 | None:intergenic | 35.0% | |
| GTGAAACAGGAATCATCTAT+TGG | - | chr7.2:1634366-1634385 | MS.gene024508:intron | 35.0% | |
| TATCAATCCAAAGACTAGGA+TGG | - | chr7.2:1637310-1637329 | MS.gene024508:CDS | 35.0% | |
| TCAATTAAGCCTCATAGCAA+TGG | - | chr7.2:1636035-1636054 | MS.gene024508:intron | 35.0% | |
| TGAGAAACTAAGCAGAAAAG+AGG | + | chr7.2:1636280-1636299 | None:intergenic | 35.0% | |
| TGCTCCTTATTCTGTTTACA+AGG | - | chr7.2:1634550-1634569 | MS.gene024508:CDS | 35.0% | |
| TTAACAACAGCTGTCAAAGA+GGG | + | chr7.2:1636173-1636192 | None:intergenic | 35.0% | |
| TTCTACTTGATACTTGTAGG+AGG | - | chr7.2:1635637-1635656 | MS.gene024508:intron | 35.0% | |
| TTGCCCTTGTAAACAGAATA+AGG | + | chr7.2:1634557-1634576 | None:intergenic | 35.0% | |
| ! | ACTGCAATTTTTGAATGCGT+TGG | - | chr7.2:1636954-1636973 | MS.gene024508:intron | 35.0% |
| ! | AGGACCATATAACTTGTGAA+AGG | + | chr7.2:1636331-1636350 | None:intergenic | 35.0% |
| ! | CACAAATTTTAGACTTGGAG+TGG | - | chr7.2:1637218-1637237 | MS.gene024508:intron | 35.0% |
| ! | CAGATTAGTTAGACCATGTT+TGG | + | chr7.2:1634839-1634858 | None:intergenic | 35.0% |
| ! | CATTTCCATTTGTTACAGTC+TGG | - | chr7.2:1634873-1634892 | MS.gene024508:intron | 35.0% |
| ! | GAGAAAAGATCTGTTGACTA+TGG | + | chr7.2:1635438-1635457 | None:intergenic | 35.0% |
| ! | TTTAAGAAGGAAGCATGAGA+AGG | - | chr7.2:1637363-1637382 | MS.gene024508:intron | 35.0% |
| ! | TTTCCATTTGTTACAGTCTG+GGG | - | chr7.2:1634875-1634894 | MS.gene024508:intron | 35.0% |
| ! | TTTTATTGTCATTCCGGAAC+TGG | - | chr7.2:1636752-1636771 | MS.gene024508:CDS | 35.0% |
| !! | TCTCTAGGGTTAGTAATTGA+TGG | - | chr7.2:1635842-1635861 | MS.gene024508:intron | 35.0% |
| !! | TGTTCTTTCTAGCATTGGTA+GGG | - | chr7.2:1636413-1636432 | MS.gene024508:intron | 35.0% |
| !! | TTGTTCTTTCTAGCATTGGT+AGG | - | chr7.2:1636412-1636431 | MS.gene024508:intron | 35.0% |
| !!! | CCGACTATTGTTTTGTTTTC+AGG | - | chr7.2:1636798-1636817 | MS.gene024508:CDS | 35.0% |
| !!! | GTTGGTTTTTAGGGTTTGTT+TGG | - | chr7.2:1634673-1634692 | MS.gene024508:intron | 35.0% |
| !!! | TTTACGCTGGTTGGTTTTTA+GGG | - | chr7.2:1634664-1634683 | MS.gene024508:intron | 35.0% |
| !!! | TTTTACGCTGGTTGGTTTTT+AGG | - | chr7.2:1634663-1634682 | MS.gene024508:intron | 35.0% |
| ACAAAGTAGCCATTGCTATG+AGG | + | chr7.2:1636047-1636066 | None:intergenic | 40.0% | |
| ACCAGCGAAGTTAAAAAACC+AGG | + | chr7.2:1636990-1637009 | None:intergenic | 40.0% | |
| ACTCGCGTATATGAAGTTTC+AGG | - | chr7.2:1636875-1636894 | MS.gene024508:intron | 40.0% | |
| AGAAGGAAAGAGATTGTAGG+AGG | + | chr7.2:1634293-1634312 | None:intergenic | 40.0% | |
| ATCAGATAAAATAGGGGGTG+GGG | + | chr7.2:1637038-1637057 | None:intergenic | 40.0% | |
| ATGACCCCTCAATGAAATCA+AGG | - | chr7.2:1635806-1635825 | MS.gene024508:intron | 40.0% | |
| ATGAGTTTCATGCCTGCTAT+TGG | - | chr7.2:1634930-1634949 | MS.gene024508:intron | 40.0% | |
| ATTGGAAGTTCTTTCCGCTA+GGG | - | chr7.2:1634384-1634403 | MS.gene024508:intron | 40.0% | |
| CACAATTGACAGAACTCTCA+TGG | + | chr7.2:1635253-1635272 | None:intergenic | 40.0% | |
| CCAGCGAAGTTAAAAAACCA+GGG | + | chr7.2:1636989-1637008 | None:intergenic | 40.0% | |
| CTACTTTGTCTCTCTGTGTA+AGG | - | chr7.2:1636058-1636077 | MS.gene024508:intron | 40.0% | |
| GAAGGAAAGAGATTGTAGGA+GGG | + | chr7.2:1634292-1634311 | None:intergenic | 40.0% | |
| GAATCAGATAAAATAGGGGG+TGG | + | chr7.2:1637040-1637059 | None:intergenic | 40.0% | |
| GTTAACAACAGCTGTCAAAG+AGG | + | chr7.2:1636174-1636193 | None:intergenic | 40.0% | |
| TAACTAATCAGCAGTCCAGT+GGG | - | chr7.2:1637167-1637186 | MS.gene024508:CDS | 40.0% | |
| TATTGGAAGTTCTTTCCGCT+AGG | - | chr7.2:1634383-1634402 | MS.gene024508:intron | 40.0% | |
| TGAGTTTCATGCCTGCTATT+GGG | - | chr7.2:1634931-1634950 | MS.gene024508:intron | 40.0% | |
| TGCTAAATGGTACGTACACT+AGG | + | chr7.2:1636468-1636487 | None:intergenic | 40.0% | |
| TGGAATTGACAGCACAAAGA+AGG | + | chr7.2:1637280-1637299 | None:intergenic | 40.0% | |
| TGGGAAAAGTGAGTTACTGT+TGG | - | chr7.2:1637238-1637257 | MS.gene024508:intron | 40.0% | |
| TTCTTATGCTGCAGTAATGC+TGG | - | chr7.2:1635993-1636012 | MS.gene024508:intron | 40.0% | |
| TTTGCGTTGCCACACATTAT+GGG | - | chr7.2:1637133-1637152 | MS.gene024508:CDS | 40.0% | |
| ! | ACATTCCTTTTTACGCTGGT+TGG | - | chr7.2:1634655-1634674 | MS.gene024508:intron | 40.0% |
| ! | CCCCCTATTTTATCTGATTC+TGG | - | chr7.2:1637040-1637059 | MS.gene024508:intron | 40.0% |
| ACAAGTCCTGCGTTGCTAAA+TGG | + | chr7.2:1636481-1636500 | None:intergenic | 45.0% | |
| ACATGAATCTTGGGGACCAA+TGG | + | chr7.2:1635776-1635795 | None:intergenic | 45.0% | |
| AGTGTACCATTTAGCAACGC+AGG | - | chr7.2:1636620-1636639 | MS.gene024508:intron | 45.0% | |
| CAGGACTTGTCATGCAACAT+TGG | - | chr7.2:1636491-1636510 | MS.gene024508:intron | 45.0% | |
| CCAAAGACTAGGATGGTATG+TGG | - | chr7.2:1637317-1637336 | MS.gene024508:CDS | 45.0% | |
| CTAACTAATCAGCAGTCCAG+TGG | - | chr7.2:1637166-1637185 | MS.gene024508:CDS | 45.0% | |
| GAGTTTCATGCCTGCTATTG+GGG | - | chr7.2:1634932-1634951 | MS.gene024508:intron | 45.0% | |
| GCAAACTCAGCAGTTGTAAC+AGG | + | chr7.2:1636230-1636249 | None:intergenic | 45.0% | |
| GCAGTAATGCTGGTCAAGTA+AGG | - | chr7.2:1636003-1636022 | MS.gene024508:intron | 45.0% | |
| GCGTTGCTAAATGGTACACT+AGG | + | chr7.2:1636620-1636639 | None:intergenic | 45.0% | |
| GGACTATGCTATGCTCGTTT+AGG | - | chr7.2:1635225-1635244 | MS.gene024508:intron | 45.0% | |
| GTTGCCACACATTATGGGTT+GGG | - | chr7.2:1637138-1637157 | MS.gene024508:CDS | 45.0% | |
| GTTTGCGTTGCCACACATTA+TGG | - | chr7.2:1637132-1637151 | MS.gene024508:CDS | 45.0% | |
| TAAGCGCTCGTGAAACTCAT+TGG | - | chr7.2:1634738-1634757 | MS.gene024508:intron | 45.0% | |
| TACGTACCATTTAGCAACGC+AGG | - | chr7.2:1636472-1636491 | MS.gene024508:intron | 45.0% | |
| TATGCCATGTCTGGTCAAGT+TGG | - | chr7.2:1636775-1636794 | MS.gene024508:CDS | 45.0% | |
| ! | AAAGAGGCATACACTGCAAG+CGG | + | chr7.2:1636264-1636283 | None:intergenic | 45.0% |
| ! | AACCGACTTCAGTAGCTGAT+AGG | + | chr7.2:1635744-1635763 | None:intergenic | 45.0% |
| ! | ACCGACTTCAGTAGCTGATA+GGG | + | chr7.2:1635743-1635762 | None:intergenic | 45.0% |
| ! | CCACATACCATCCTAGTCTT+TGG | + | chr7.2:1637320-1637339 | None:intergenic | 45.0% |
| ! | GTCGGTTCTTTGATAGCCAT+TGG | - | chr7.2:1635757-1635776 | MS.gene024508:intron | 45.0% |
| !! | TCTTTCTAGCATTGGTAGGG+AGG | - | chr7.2:1636416-1636435 | MS.gene024508:intron | 45.0% |
| !!! | CCCTGGTTTTTTAACTTCGC+TGG | - | chr7.2:1636986-1637005 | MS.gene024508:intron | 45.0% |
| CAGACATGGCATACCAGTTC+CGG | + | chr7.2:1636768-1636787 | None:intergenic | 50.0% | |
| CGATCCCAACCCATAATGTG+TGG | + | chr7.2:1637145-1637164 | None:intergenic | 50.0% | |
| CGTTGCCACACATTATGGGT+TGG | - | chr7.2:1637137-1637156 | MS.gene024508:CDS | 50.0% | |
| GAGCCCCAGACTGTAACAAA+TGG | + | chr7.2:1634881-1634900 | None:intergenic | 50.0% | |
| GCCCTATCAGCTACTGAAGT+CGG | - | chr7.2:1635739-1635758 | MS.gene024508:intron | 50.0% | |
| GCTTGCTTCCTTCATCTTCC+AGG | - | chr7.2:1634262-1634281 | MS.gene024508:intron | 50.0% | |
| GGCAGTAGAGAAATCCCTAG+CGG | + | chr7.2:1634401-1634420 | None:intergenic | 50.0% | |
| TATTTGCGCTCCCCAATAGC+AGG | + | chr7.2:1634945-1634964 | None:intergenic | 50.0% | |
| TGTATCGTAGCAGAGCGAGT+GGG | + | chr7.2:1635338-1635357 | None:intergenic | 50.0% | |
| TTGAAAGCTGACTGTCCCAC+TGG | + | chr7.2:1637185-1637204 | None:intergenic | 50.0% | |
| ! | TGCGTTGGTCTGTTATTCCC+TGG | - | chr7.2:1636969-1636988 | MS.gene024508:intron | 50.0% |
| ! | TGGGGAGCGCAAATATGACT+GGG | - | chr7.2:1634950-1634969 | MS.gene024508:intron | 50.0% |
| ! | TTGGGGAGCGCAAATATGAC+TGG | - | chr7.2:1634949-1634968 | MS.gene024508:intron | 50.0% |
| !! | AGATTGTAGGAGGGAGTACC+TGG | + | chr7.2:1634283-1634302 | None:intergenic | 50.0% |
| !! | AGGGAGTACCTGGAAGATGA+AGG | + | chr7.2:1634273-1634292 | None:intergenic | 50.0% |
| !! | GCTCTTGTTGTTGATCGTCG+CGG | - | chr7.2:1634897-1634916 | MS.gene024508:intron | 50.0% |
| CGGAACTGGTATGCCATGTC+TGG | - | chr7.2:1636766-1636785 | MS.gene024508:CDS | 55.0% | |
| GTGTATCGTAGCAGAGCGAG+TGG | + | chr7.2:1635339-1635358 | None:intergenic | 55.0% | |
| TCGGCCAACTTGACCAGACA+TGG | + | chr7.2:1636782-1636801 | None:intergenic | 55.0% | |
| ! | ACCACGCAAGCAAGCTTGCT+GGG | + | chr7.2:1635511-1635530 | None:intergenic | 55.0% |
| GACCACGCAAGCAAGCTTGC+TGG | + | chr7.2:1635512-1635531 | None:intergenic | 60.0% | |
| ! | GCAAGCTTGCTTGCGTGGTC+AGG | - | chr7.2:1635512-1635531 | MS.gene024508:CDS | 60.0% |
| ! | GCCCAGCAAGCTTGCTTGCG+TGG | - | chr7.2:1635507-1635526 | MS.gene024508:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 1634246 | 1637474 | 1634246 | ID=MS.gene024508 |
| chr7.2 | mRNA | 1634246 | 1637474 | 1634246 | ID=MS.gene024508.t1;Parent=MS.gene024508 |
| chr7.2 | exon | 1637437 | 1637474 | 1637437 | ID=MS.gene024508.t1.exon1;Parent=MS.gene024508.t1 |
| chr7.2 | CDS | 1637437 | 1637474 | 1637437 | ID=cds.MS.gene024508.t1;Parent=MS.gene024508.t1 |
| chr7.2 | exon | 1637275 | 1637345 | 1637275 | ID=MS.gene024508.t1.exon2;Parent=MS.gene024508.t1 |
| chr7.2 | CDS | 1637275 | 1637345 | 1637275 | ID=cds.MS.gene024508.t1;Parent=MS.gene024508.t1 |
| chr7.2 | exon | 1637095 | 1637192 | 1637095 | ID=MS.gene024508.t1.exon3;Parent=MS.gene024508.t1 |
| chr7.2 | CDS | 1637095 | 1637192 | 1637095 | ID=cds.MS.gene024508.t1;Parent=MS.gene024508.t1 |
| chr7.2 | exon | 1636737 | 1636829 | 1636737 | ID=MS.gene024508.t1.exon4;Parent=MS.gene024508.t1 |
| chr7.2 | CDS | 1636737 | 1636829 | 1636737 | ID=cds.MS.gene024508.t1;Parent=MS.gene024508.t1 |
| chr7.2 | exon | 1635893 | 1635987 | 1635893 | ID=MS.gene024508.t1.exon5;Parent=MS.gene024508.t1 |
| chr7.2 | CDS | 1635893 | 1635987 | 1635893 | ID=cds.MS.gene024508.t1;Parent=MS.gene024508.t1 |
| chr7.2 | exon | 1635646 | 1635713 | 1635646 | ID=MS.gene024508.t1.exon6;Parent=MS.gene024508.t1 |
| chr7.2 | CDS | 1635646 | 1635713 | 1635646 | ID=cds.MS.gene024508.t1;Parent=MS.gene024508.t1 |
| chr7.2 | exon | 1635449 | 1635537 | 1635449 | ID=MS.gene024508.t1.exon7;Parent=MS.gene024508.t1 |
| chr7.2 | CDS | 1635449 | 1635537 | 1635449 | ID=cds.MS.gene024508.t1;Parent=MS.gene024508.t1 |
| chr7.2 | exon | 1634475 | 1634587 | 1634475 | ID=MS.gene024508.t1.exon8;Parent=MS.gene024508.t1 |
| chr7.2 | CDS | 1634475 | 1634587 | 1634475 | ID=cds.MS.gene024508.t1;Parent=MS.gene024508.t1 |
| chr7.2 | exon | 1634246 | 1634252 | 1634246 | ID=MS.gene024508.t1.exon9;Parent=MS.gene024508.t1 |
| chr7.2 | CDS | 1634246 | 1634252 | 1634246 | ID=cds.MS.gene024508.t1;Parent=MS.gene024508.t1 |
| Gene Sequence |
| Protein sequence |
